Citrus Sinensis ID: 041082
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.884 | 0.559 | 0.304 | 1e-59 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.555 | 0.367 | 0.347 | 2e-51 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.555 | 0.367 | 0.365 | 4e-51 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.605 | 0.329 | 0.334 | 1e-50 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.585 | 0.333 | 0.371 | 2e-49 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.863 | 0.538 | 0.285 | 2e-49 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.599 | 0.371 | 0.311 | 4e-49 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.586 | 0.384 | 0.319 | 5e-49 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.533 | 0.307 | 0.363 | 7e-47 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.611 | 0.355 | 0.319 | 4e-45 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 208/684 (30%), Positives = 311/684 (45%), Gaps = 119/684 (17%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSS-LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT 111
++ TL I L +P + NLS+ L TLDL SGSIP I N+ +L + + N
Sbjct: 337 QLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNM 396
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLEN- 170
L G +P LG L L L L +N L+G I + I N++ L LDLS+N + +L N
Sbjct: 397 LSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNC 456
Query: 171 ---LLLW--GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
L LW N +G IP I +L L++ NS +P G L NL L+L DN
Sbjct: 457 SHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNK 516
Query: 226 LTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMF-NCNISGGILEEISNLTNLTAIYLAGN 284
L+ P+ +L NC +E S+F N+ G + ++ L + + L+ N
Sbjct: 517 LSGKLPQ-----TLGNCLTME---------SLFLEGNLFYGDIPDLKGLVGVKEVDLSNN 562
Query: 285 KLNGSIPITLCKLQKLQLLSFVDNKLEGPIP----YEFCRLASLY-ELDLSGNKLSGSIP 339
L+GSIP KL+ L+ N LEG +P +E S+ DL G + +
Sbjct: 563 DLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLK 622
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI--------------SP 385
C S ++ S++L ++ + +L L ++S I +P
Sbjct: 623 PCLSQAPS--VVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNPTP 680
Query: 386 LPLEIGNLKVLVGIDL--SMNNFSG--------FGSIYKARIQDGMKV-AVKVFDLQYER 434
LE+ + K+ G DL + N FS FG++YKA + KV AVKV ++Q
Sbjct: 681 STLEVLHEKISYG-DLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRG 739
Query: 435 AFKSFDVACDMMK-------------------------KLVLEYMPHGSLEKCLYSS--- 466
A KSF C+ +K L+ E+MP+GSL+ L+
Sbjct: 740 AMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGSLDMWLHPEEVE 799
Query: 467 -----NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521
+ L + +RLNI IDVA L+YLH PI HCDLK SNVLL +++ AH+SDFG
Sbjct: 800 EIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNVLLDDDLTAHVSDFG 859
Query: 522 MAKLLLK-EDQSFTQNTNTCHHRI--------YGTRRNPQMN------------------ 554
+A+LLLK +++SF ++ R YG P +N
Sbjct: 860 LARLLLKFDEESFFNQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFGILLLEMFTGKR 919
Query: 555 ----FFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAE 610
F G TL S+ LP ++++VD ++L + + +CL+ VF + + C E
Sbjct: 920 PTNELFGGNFTLNSYTKSALPERILDIVDESILHIGLRVGFPVVECLTMVFEVGLRCCEE 979
Query: 611 SPKQRINAKESVTRLLKIRDLLLK 634
SP R+ V L+ IR+ K
Sbjct: 980 SPMNRLATSIVVKELISIRERFFK 1003
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 203/406 (50%), Gaps = 51/406 (12%)
Query: 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSI 96
S +C W GV CD SY V +LN+S L+L I +G+L +LQ++DL N +G IP I
Sbjct: 56 SDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEI 115
Query: 97 FNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156
N +SL+ + + N L+G+IP + L +LETL L+NN LTG + +++ + +L LDL+
Sbjct: 116 GNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLA 175
Query: 157 HNNLTDVQIPNLENLLLW----------------------------------GNNFSGAI 182
N+LT + LL W GNN +G I
Sbjct: 176 GNHLTG----EISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTI 231
Query: 183 PHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNC 242
P I N + IL++ N IP G + + L+L N LT PE+ L
Sbjct: 232 PESIGNCTSFQILDISYNQITGEIPYNIG-FLQVATLSLQGNRLTGRIPEVIGLM----- 285
Query: 243 KYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL 302
Q+L V + + + G I + NL+ +YL GN L G IP L + +L
Sbjct: 286 -------QALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMSRLSY 338
Query: 303 LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISII 362
L DNKL G IP E +L L+EL+L+ N+L G IP+ + +L ++ N L I
Sbjct: 339 LQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSI 398
Query: 363 PSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
P NL + YLNLSSN F +P+E+G++ L +DLS NNFSG
Sbjct: 399 PLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSG 444
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 203/400 (50%), Gaps = 45/400 (11%)
Query: 40 CHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM 99
C W GV CD S V +LN+S L+L I S LG+L +LQ++DL N G IP I N
Sbjct: 61 CSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNC 120
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159
SL + F+ N LFG+IP + L +LE L L+NN LTG I +++ + +L LDL+ N
Sbjct: 121 VSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQ 180
Query: 160 LTDVQIPNL-------------ENLL-------------LW-----GNNFSGAIPHFIFN 188
LT +IP L N+L LW GNN +G IP I N
Sbjct: 181 LTG-EIPRLLYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGN 239
Query: 189 ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
+ IL++ N +IP G + + L+L N LT PE+ L
Sbjct: 240 CTSFEILDVSYNQITGVIPYNIG-FLQVATLSLQGNKLTGRIPEVIGLM----------- 287
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308
Q+L V + + ++G I + NL+ +YL GNKL G IP L + +L L DN
Sbjct: 288 -QALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDN 346
Query: 309 KLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN 368
+L G IP E +L L+EL+L+ N L G IP+ + +L ++ N L +P N
Sbjct: 347 ELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRN 406
Query: 369 LKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
L + YLNLSSN F +P E+G++ L +DLS NNFSG
Sbjct: 407 LGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSG 446
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 229/484 (47%), Gaps = 97/484 (20%)
Query: 18 KGHVTDDPTNFLAKNWNTSSTV--CHWTGVSCDVRSYRVTT------------------- 56
K +++DP L+ +W ++ C+WTG++CD + V+
Sbjct: 38 KNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLT 96
Query: 57 ----LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM------------- 99
L+++ S T IP+E+G L+ L L L N+FSGSIPS I+ +
Sbjct: 97 YLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLL 156
Query: 100 -----------SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS 148
SSL+ I F+ N L G+IPE LG+L L+ N LTG+I SI L+
Sbjct: 157 SGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLA 216
Query: 149 SLSDLDLSHNNLTDVQIP-------NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201
+L+DLDLS N LT +IP NL++L+L N G IP I N S L LEL N
Sbjct: 217 NLTDLDLSGNQLTG-KIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQ 275
Query: 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSS------------ 249
IP GNL+ L+ L +Y N LTSS P S L+ L+ +L S
Sbjct: 276 LTGKIPAELGNLVQLQALRIYKNKLTSSIP--SSLFRLTQLTHLGLSENHLVGPISEEIG 333
Query: 250 --QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307
+SLEV ++ + N +G + I+NL NLT + + N ++G +P L L L+ LS D
Sbjct: 334 FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393
Query: 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFG-----------------------N 344
N L GPIP L LDLS N+++G IP FG N
Sbjct: 394 NLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFN 453
Query: 345 QTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404
++L LS+ N L + + L+ + L +S N P+P EIGNLK L + L N
Sbjct: 454 CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSN 513
Query: 405 NFSG 408
F+G
Sbjct: 514 GFTG 517
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 216/398 (54%), Gaps = 24/398 (6%)
Query: 32 NWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPS-ELGNLSSLQTLDLSFNWFSG 90
N NTS + W GVSC+ R + LN++ + T +LS+L +DLS N SG
Sbjct: 58 NTNTSFSCTSWYGVSCNSRG-SIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSG 116
Query: 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150
+IP N+S L+ + N L GEI LGNL L L+L N+LT I S + N+ S+
Sbjct: 117 TIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESM 176
Query: 151 SDLDLSHNNLTDVQIP----NLENLL---LWGNNFSGAIPHFIFNASKLSILELQKNSFF 203
+DL LS N LT IP NL+NL+ L+ N +G IP + N ++ L L +N
Sbjct: 177 TDLALSQNKLTG-SIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLT 235
Query: 204 DLIPNTFGNLINLKRLNLYDNYLTSS-TPELSFLYSLSNCKYLEQSS------------Q 250
IP+T GNL NL L LY+NYLT PE+ + S++N L Q+ +
Sbjct: 236 GSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLA-LSQNKLTGSIPSSLGNLK 294
Query: 251 SLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKL 310
+L + S+F ++GGI ++ N+ ++ + L+ NKL GSIP +L L+ L +L +N L
Sbjct: 295 NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYL 354
Query: 311 EGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK 370
G IP E + S+ +L L+ NKL+GSIP+ FGN +L L L N L +IP L N++
Sbjct: 355 TGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNME 414
Query: 371 DILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
++ L+LS N +P GN L + L +N+ SG
Sbjct: 415 SMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSG 452
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 194/680 (28%), Positives = 302/680 (44%), Gaps = 128/680 (18%)
Query: 51 SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110
S ++T L++ G ++ +IP +GNL SLQTLDL N +G +P S+ +S L + +N
Sbjct: 376 STQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSN 435
Query: 111 TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLEN 170
L GEIP LGN++ L L+L NN G+I SS+ + S L DL+L N L
Sbjct: 436 GLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKL---------- 485
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
+G+IPH + L +L + N + G L L L++ N L+
Sbjct: 486 --------NGSIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQI 537
Query: 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI 290
P+ +L+NC LE F + N G + +I LT L + L+ N L+G+I
Sbjct: 538 PQ-----TLANCLSLE--------FLLLQGNSFVGPIPDIRGLTGLRFLDLSKNNLSGTI 584
Query: 291 PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN-KLSGSIPTCFGNQTSLR 349
P + KLQ L+ N +G +P E + + + GN L G IP+ S+
Sbjct: 585 PEYMANFSKLQNLNLSLNNFDGAVPTEGV-FRNTSAMSVFGNINLCGGIPSLQLQPCSVE 643
Query: 350 ILSLDSN--KLISIIPS---------------TLW---NLKDILYLNLSSNFFISPL--- 386
+ S+ K+I+I S W +K + N ++ SP+
Sbjct: 644 LPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFSPVKSF 703
Query: 387 --PLEIGNLKVLVGIDLSMNNFSG---FGSIYKARIQDGMK-VAVKVFDLQYERAFKSFD 440
+ L G S +N G FG+++K + K VA+KV +L A KSF
Sbjct: 704 YEKISYDELYKTTG-GFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRGAAKSFI 762
Query: 441 VACDMM-------------------------KKLVLEYMPHGSLEKCLY--------SSN 467
C+ + + LV E+MP+G+L+ L+ + +
Sbjct: 763 AECEALGGIRHRNLVKLVTICSSSDFEGNDFRALVYEFMPNGNLDMWLHPDEIEETGNPS 822
Query: 468 YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527
L +F RLNI IDVA AL YLH PI HCD+K SN+LL ++ AH+SDFG+A+LLL
Sbjct: 823 RTLGLFARLNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTAHVSDFGLAQLLL 882
Query: 528 KEDQ------------------SFTQNTNTCHHRIYG-------------TRRNPQMNFF 556
K D+ + + H I G T + P F
Sbjct: 883 KFDRDTFHIQFSSAGVRGTIGYAAPEYGMGGHPSIMGDVYSFGIVLLEIFTGKRPTNKLF 942
Query: 557 SGEMTLKSWVNDLL-PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
+TL S+ L +++ D +L +CL+ VF + + C+ ESP R
Sbjct: 943 VDGLTLHSFTKSALQKRQALDITDETILRGAYAQHFNMVECLTLVFRVGVSCSEESPVNR 1002
Query: 616 INAKESVTRLLKIRDLLLKN 635
I+ E++++L+ IR+ ++
Sbjct: 1003 ISMAEAISKLVSIRESFFRD 1022
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 233/497 (46%), Gaps = 114/497 (22%)
Query: 18 KGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLT------------ 65
K V+++ + +WN SS C+W GV+C R RV +LN+ G LT
Sbjct: 39 KSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSF 98
Query: 66 ------------STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
STIP ++G L LQ L++S+N G IPSS+ N S L ++ ++N L
Sbjct: 99 LRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLG 158
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPN----LE 169
+P ELG+L++L L L N LTG +S+ NL+SL LD ++N + +IP+ L
Sbjct: 159 HGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRG-EIPDEVARLT 217
Query: 170 NLLLWG---NNFSGAIPHFIFNASKLSILELQKNS------------------------- 201
++ + N+FSG P ++N S L L L NS
Sbjct: 218 QMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQ 277
Query: 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTP-------------------------ELSFL 236
F IP T N+ +L+R ++ NYL+ S P L F+
Sbjct: 278 FTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFI 337
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL-TNLTAIYLAGNKLNGSIPITLC 295
+++NC LE L+V +N + G + I+NL T LT+++L N ++G+IP +
Sbjct: 338 GAVANCTQLEY----LDV--GYN-RLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIG 390
Query: 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL-- 353
L LQ LS N L G +P F +L +L +DL N +SG IP+ FGN T L+ L L
Sbjct: 391 NLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNS 450
Query: 354 ----------------------DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG 391
D+N+L IP + + + Y++LS+NF P E+G
Sbjct: 451 NSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVG 510
Query: 392 NLKVLVGIDLSMNNFSG 408
L++LVG+ S N SG
Sbjct: 511 KLELLVGLGASYNKLSG 527
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 222/470 (47%), Gaps = 95/470 (20%)
Query: 32 NWNTS--STVCHWTGVSCDVRSYRVTTLNISGLS------------------------LT 65
+W TS S C W GVSC+ ++ V LN+S L+ L+
Sbjct: 46 DWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLS 105
Query: 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEEL----- 120
IP E+G+ SSLQ LDLSFN SG IP SI + L + NN L G IP L
Sbjct: 106 GQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPN 165
Query: 121 -------------------------------GN---------LAELETLW---LQNNFLT 137
GN L +L LW ++NN LT
Sbjct: 166 LKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLT 225
Query: 138 GTIHSSIFNLSSLSDLDLSHNNLT-----DVQIPNLENLLLWGNNFSGAIPHFIFNASKL 192
G+I +I N ++ LDLS+N LT D+ + L L GN SG IP I L
Sbjct: 226 GSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQAL 285
Query: 193 SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSL 252
++L+L N IP GNL ++L L+ N LT S P L ++S YLE + L
Sbjct: 286 AVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPP--ELGNMSKLHYLELNDNHL 343
Query: 253 ---------EVFSMFNCNIS-----GGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQ 298
++ +F+ N++ G I + +S+ TNL ++ + GNK +G+IP KL+
Sbjct: 344 TGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLE 403
Query: 299 KLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358
+ L+ N ++GPIP E R+ +L LDLS NK++G IP+ G+ L ++L N +
Sbjct: 404 SMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHI 463
Query: 359 ISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
++P NL+ I+ ++LS+N P+P E+ L+ ++ + L NN +G
Sbjct: 464 TGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTG 513
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 196/391 (50%), Gaps = 50/391 (12%)
Query: 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGN 122
+L+ IPS G L+ L TL L+ N FSG IP + S++ + N L GEIP ELG
Sbjct: 295 ALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGM 354
Query: 123 LAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD------VQIPNLENLLLWGN 176
L++L+ L L N L+G + SI+ + SL L L NNL+ ++ L +L L+ N
Sbjct: 355 LSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYEN 414
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
+F+G IP + S L +L+L +N F IP + LKRL L NYL S P
Sbjct: 415 HFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPS---- 470
Query: 237 YSLSNCKYLEQ----------------SSQSLEVFSMFNCNISGGILEEISNLTNLTAIY 280
L C LE+ Q+L F + N +G I + NL N+TAIY
Sbjct: 471 -DLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIY 529
Query: 281 LAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT 340
L+ N+L+GSIP L L KL+ L+ N L+G +P E L ELD S N L+GSIP+
Sbjct: 530 LSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPS 589
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWN-----------------------LKDILYLNL 377
G+ T L LSL N IP++L+ L+ + LNL
Sbjct: 590 TLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNL 649
Query: 378 SSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
SSN LP+++G LK+L +D+S NN SG
Sbjct: 650 SSNKLNGQLPIDLGKLKMLEELDVSHNNLSG 680
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/466 (31%), Positives = 213/466 (45%), Gaps = 75/466 (16%)
Query: 10 LSFQVFVLKGHVTDDPTNFLAKNWNT-SSTVCHWTGVSCDVRSYRVTTLNISGLSLTST- 67
L F+ F+ +D +LA +WN S C+WTG++C VT+++++G++L+ T
Sbjct: 32 LEFKAFL------NDSNGYLA-SWNQLDSNPCNWTGIAC-THLRTVTSVDLNGMNLSGTL 83
Query: 68 -----------------------IPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLS 104
IP +L SL+ LDL N F G IP + + +L
Sbjct: 84 SPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKK 143
Query: 105 IYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV- 163
+Y N LFG IP ++GNL+ L+ L + +N LTG I S+ L L + N + V
Sbjct: 144 LYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVI 203
Query: 164 -----------------------------QIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194
++ NL +L+LW N SG IP + N S+L +
Sbjct: 204 PSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEV 263
Query: 195 LELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP-ELSFLYSLSNCKYLEQSSQS-- 251
L L +N F IP G L +KRL LY N LT P E+ L + + E
Sbjct: 264 LALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFI 323
Query: 252 ---------LEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL 302
L++ +F + G I E+ LT L + L+ N+LNG+IP L L L
Sbjct: 324 PKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVD 383
Query: 303 LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISII 362
L DN+LEG IP ++ LD+S N LSG IP F +L +LSL SNKL I
Sbjct: 384 LQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNI 443
Query: 363 PSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
P L K + L L N LP+E+ NL+ L ++L N SG
Sbjct: 444 PRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSG 489
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| 297743586 | 737 | unnamed protein product [Vitis vinifera] | 0.934 | 0.810 | 0.363 | 5e-96 | |
| 297740829 | 1892 | unnamed protein product [Vitis vinifera] | 0.818 | 0.276 | 0.376 | 1e-92 | |
| 297740832 | 1686 | unnamed protein product [Vitis vinifera] | 0.802 | 0.304 | 0.379 | 1e-89 | |
| 302143440 | 929 | unnamed protein product [Vitis vinifera] | 0.857 | 0.589 | 0.375 | 1e-87 | |
| 302143445 | 2843 | unnamed protein product [Vitis vinifera] | 0.841 | 0.189 | 0.376 | 2e-86 | |
| 297740823 | 791 | unnamed protein product [Vitis vinifera] | 0.896 | 0.724 | 0.359 | 3e-85 | |
| 302143442 | 999 | unnamed protein product [Vitis vinifera] | 0.921 | 0.589 | 0.346 | 8e-85 | |
| 302143439 | 830 | unnamed protein product [Vitis vinifera] | 0.918 | 0.707 | 0.337 | 1e-83 | |
| 296085726 | 932 | unnamed protein product [Vitis vinifera] | 0.848 | 0.581 | 0.342 | 4e-83 | |
| 359485176 | 1160 | PREDICTED: probable LRR receptor-like se | 0.879 | 0.484 | 0.354 | 2e-81 |
| >gi|297743586|emb|CBI36453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 264/727 (36%), Positives = 360/727 (49%), Gaps = 130/727 (17%)
Query: 14 VFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELG 73
+ K + D + L NW ++ C+W GVSC R RVT L + L T+ LG
Sbjct: 37 LLAFKSDIIDPTHSILGGNWTQETSFCNWVGVSCSRRRQRVTALRLQKRGLKGTLSPYLG 96
Query: 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133
NLS + LDLS N F G +P + G + +ELG L +L++L L
Sbjct: 97 NLSFIVLLDLSNNSFGGHLPYEL-----------------GHLYQELGILPKLDSLLLGG 139
Query: 134 NFLTGTIHSSIFNLSSLSDL---DLSHNNLTDVQIP-------NLENLLLWGNNFSGAIP 183
N L GTI SS+ N+S+L +L LS+N D QIP NLE L L GN+ +G IP
Sbjct: 140 NNLRGTIPSSLGNISTLEELLFASLSYNRF-DGQIPEEIGSLRNLEELYLGGNHLTGPIP 198
Query: 184 HFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF-------- 235
I N S L IL L+ N IP+T GNL+NL L L N LT + P+ F
Sbjct: 199 SSIGNISSLQILFLEDNKIQGSIPSTLGNLLNLSYLVLELNELTGAIPQEIFNISSLQIL 258
Query: 236 -------LY------SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
L+ SL N K+L+ S+ + G I I +L NL + L
Sbjct: 259 SIDIGNNLFTGPIPPSLGNLKFLQ-------TLSLGENQLKGHIPSGIGSLKNLGTLELG 311
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCF 342
N LNG+IP T+ +L+ LQ ++ +N+LEGPIP E C L L EL L NKLSGSIP C
Sbjct: 312 DNNLNGNIPSTIGRLENLQRMNIFNNELEGPIPEELCGLRDLGELSLYNNKLSGSIPHCI 371
Query: 343 GNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402
GN + L+ L L SN L S IP+ LW+L ++L+LNLS N LP ++G L V+ IDLS
Sbjct: 372 GNLSRLQKLFLSSNSLTSSIPTGLWSLGNLLFLNLSFNSLGGSLPSDMGTLTVIEDIDLS 431
Query: 403 MNNFSG--------FGSIYK----------------ARIQD-------------GMKVAV 425
N G F S+Y + Q+ G+ V
Sbjct: 432 WNKLIGNIPGILGTFESLYSLNLSRNSFQEAIPETLGKTQESKTKQVLLKYVLPGIAAVV 491
Query: 426 ---------------KVFDLQYERAFKSFDVACDMMKK--------------------LV 450
KV +L+ E AFKSFD C ++ + LV
Sbjct: 492 VFGALYYMLKNYRKVKVLNLRLEGAFKSFDAECKVLARIRHRNLIKVISSCSNLDVRALV 551
Query: 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510
L+YM +GSLEK LYS NY L++FQR++IM+DVALALEYLH S P++HCDLK SNVLL
Sbjct: 552 LQYMSNGSLEKWLYSHNYCLNLFQRVSIMLDVALALEYLHHSQSEPVVHCDLKPSNVLLD 611
Query: 511 NNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLL 570
++MVAH+ DFG+AK+L+ E++ TQ T T Y S + + S+ LL
Sbjct: 612 DDMVAHVGDFGLAKILV-ENKVVTQ-TKTLGTLGYIAPEYGSEGRVSTKGDVYSYGIMLL 669
Query: 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630
I + + S E T+ L + L +EC+ + P++R K+ V +L KI+
Sbjct: 670 EIFTRKKPTDEMFSEELNVMATQSNLLLAIMELGLECSRDLPEERKGIKDVVVKLNKIKL 729
Query: 631 LLLKNVK 637
L+ +
Sbjct: 730 QFLRRTR 736
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740829|emb|CBI31011.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 260/690 (37%), Positives = 350/690 (50%), Gaps = 167/690 (24%)
Query: 65 TSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLA 124
T +IP+ +GNL L+ L LS N F+G IP +I ++S+L +Y N N L G IP E+GNL+
Sbjct: 1248 TGSIPNGIGNL--LRGLSLSINQFTGGIPQAIGSLSNLEELYLNYNKLTGGIPREIGNLS 1305
Query: 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPN-------LENLLLWGNN 177
L L L +N ++G I + IF N+L+ Q+P L +L L N
Sbjct: 1306 NLNILQLGSNGISGPIPAEIFT-----------NHLSG-QLPTTLSLCRELLSLALPMNK 1353
Query: 178 FSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD--NYLTSSTP---- 231
F+G+IP I N SKL ++L +NS IP +FGNL+ LK L LY N + + P
Sbjct: 1354 FTGSIPREIGNLSKLEEIDLSENSLIGSIPTSFGNLMTLKFLRLYIGINEFSGTIPMSIS 1413
Query: 232 -----------ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIY 280
+ SF +L N L +LE+F C G I I NLTNL +
Sbjct: 1414 NMSKLTVLSLSDNSFTGTLPNS--LGNLPIALEIFIASACQFRGTIPTGIGNLTNLIWLD 1471
Query: 281 LAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT 340
L N L GSIP TL +LQKLQ LS V N++ G IP + C L +L L LS
Sbjct: 1472 LGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPNDLCHLKNLGYLQLS---------- 1521
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGID 400
LDSN L IP + W+L+D+L LNLSSNF E G+L L +D
Sbjct: 1522 ------------LDSNVLAFNIPMSFWSLRDLLVLNLSSNFLT-----EFGDLVSLESLD 1564
Query: 401 LSMNNFSGFGSIYKA---------------RIQ--------------------------- 418
LS NN S G+I K ++Q
Sbjct: 1565 LSQNNLS--GTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFMFNEALCGAP 1622
Query: 419 ----------DGMKVAVKVFDLQYERAFKSFDVACDMM--------------------KK 448
+G+ VA+KVF+L+++ A +SF+ C++M K
Sbjct: 1623 HFQVMAWVLSNGLTVAIKVFNLEFQGALRSFNSECEVMQGIRHRNLVRIITCCSNLDFKA 1682
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LVL+YMP+GSLEK LYS Y LD+ QRLNIMIDVA ALEYLH S+ ++HCDLK SNVL
Sbjct: 1683 LVLKYMPNGSLEKLLYSHYYFLDLIQRLNIMIDVASALEYLHHDCSSLVVHCDLKPSNVL 1742
Query: 509 LGNNMVAHLSDFGMAKLLLK-EDQSFTQNTNTCHHRI-----------------YG---- 546
L ++MVAH++DFG+AKLL + E T+ +T + YG
Sbjct: 1743 LDDDMVAHVADFGIAKLLTETESMQQTKTLSTIGYMAPEHGSAGIVSTKSDVYSYGILLM 1802
Query: 547 ---TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNL 603
R+ P F+G++TLK+WV L SV++VVDVNLL ED+ TK CLS + L
Sbjct: 1803 EVFARKKPMDEMFTGDLTLKTWVES-LSNSVIQVVDVNLLRREDEDLATKLSCLSSIMAL 1861
Query: 604 AMECTAESPKQRINAKESVTRLLKIRDLLL 633
A+ CT +SP++RI+ K++V L K R LL
Sbjct: 1862 ALACTTDSPEERIDMKDAVVELKKSRIKLL 1891
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740832|emb|CBI31014.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 243/641 (37%), Positives = 317/641 (49%), Gaps = 128/641 (19%)
Query: 64 LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNL 123
L IP+E+ N+SSLQ +D + N SGS+P I N+S L I N+L G IP GN
Sbjct: 1086 LIGPIPAEISNISSLQGIDFTNNSLSGSLPMEIGNLSKLEEISLYGNSLIGSIPTSFGNF 1145
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD-------VQIPNLENLLLWGN 176
L+ L L N LTG + + FN+S L L L N+L+ +P+LE L + N
Sbjct: 1146 KALKFLNLGINNLTGMVPEASFNISKLQALALVQNHLSGSLPSSIGTWLPDLEWLSIGAN 1205
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
FSG IP I N SKL L + NSF +P G L N
Sbjct: 1206 EFSGIIPFSISNMSKLIQLHVACNSFSGNVPKDLGTLPN--------------------- 1244
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCK 296
SL N S +LE+F C + G I I NLTNL + L N L G IP TL +
Sbjct: 1245 -SLGNF------SIALEIFVASACQLRGSIPTGIGNLTNLIELDLGANDLIGLIPTTLGR 1297
Query: 297 LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356
LQKLQLL N++ G IP + L +L L LS NKL GSIP+CFG+ +L+ LS DSN
Sbjct: 1298 LQKLQLLHIARNRIRGSIPNDLFHLKNLGYLHLSSNKLFGSIPSCFGDLPTLQALSFDSN 1357
Query: 357 KLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN------------ 404
L IPS+LW+LKD+L+LNLSSNF LP ++GN+K + + LS N
Sbjct: 1358 ALAFNIPSSLWSLKDLLFLNLSSNFLTGNLPPKVGNMKSITALALSKNLVSEIPDGGPFV 1417
Query: 405 NFSGFGSIYKARIQDGMKVAV--------------KVFDLQYERAFKSFDVA-------- 442
NF+ I+ + V K F L+Y + V
Sbjct: 1418 NFTAKSFIFNEALCGAPHFQVIACDKNTPSQSWKTKSFILKYILLPVASTVTLVAFINLV 1477
Query: 443 -----CDMM--KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
C + K LVLEYMP+GSL+K LYS NY LD+ QRLNIMIDVA ALEYLH S+
Sbjct: 1478 RIITCCSNLNFKALVLEYMPNGSLDKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSS 1537
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN----------------- 538
++HCDLK +NVLL +NMVAH++DFG+A+ LL E +S Q
Sbjct: 1538 LVVHCDLKPNNVLLDDNMVAHVADFGIAR-LLTETKSMQQTKTLGTIGYMAPAEYGSDGI 1596
Query: 539 -TCHHRIYG---------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588
+ +Y R+ P F+G++TLK+WV L
Sbjct: 1597 VSIKGDVYSYGILLMEVFARKKPMDEMFTGDLTLKTWVESFL------------------ 1638
Query: 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629
CLS + LA+ CT +SP++RI+ K+ V L KIR
Sbjct: 1639 ------SCLSSIMALALACTIDSPEERIHMKDVVVELKKIR 1673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143440|emb|CBI22001.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 262/698 (37%), Positives = 355/698 (50%), Gaps = 150/698 (21%)
Query: 64 LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG-EIPEELGN 122
+ IPSELGNL +LQ L LS N +G IP +IFN+SSL I F+NN+L G EIP L +
Sbjct: 253 IPGNIPSELGNLINLQYLKLSANNLTGIIPEAIFNISSLQEIDFSNNSLSGCEIPSSLSH 312
Query: 123 LAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD---VQIPNLENL--LLWGNN 177
L L L N TG I +I +LS+L +L L++NNL +I NL NL L +G++
Sbjct: 313 CPHLRGLSLSLNQFTGGIPQAIGSLSNLEELYLAYNNLVGGIPREIGNLSNLNILDFGSS 372
Query: 178 -FSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRLNLYDNYLTSSTP-ELS 234
SG IP IFN S L I +L NS IP +FGNL L+ L L DN + + P EL
Sbjct: 373 GISGPIPPEIFNISSLQIFDLTDNSLLGSNIPPSFGNLTALQDLELGDNNIQGNIPNELG 432
Query: 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL 294
L +L N K E N++G I E I N++ L ++ LA N +GS+P L
Sbjct: 433 NLINLQNLKLSEN-------------NLTGIIPEAIFNISKLQSLSLAQNHFSGSLPSNL 479
Query: 295 CKLQKLQLLSF-------------------------------VDNKLEGPIPYEFCRLA- 322
L++L+ L+ DN L+G +P L+
Sbjct: 480 GNLRRLEFLNLGSNQLTDEHSASEVGFLTSLTNCNFLRTLWIEDNPLKGILPNSLGNLSI 539
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
SL +L ++GN+L GSIP +L L L IIP +L L + YLN+S N
Sbjct: 540 SLEKLGIAGNRLRGSIPNDLCRLKNLGYLFL-------IIPKSLKALTYLKYLNVSFNKL 592
Query: 383 ISPLPLEIG------------------NLKVLVGID---------------------LSM 403
+P + G NL+V ID
Sbjct: 593 QGEIP-DGGPFMNFTAESFIFNEALRKNLEVPTPIDSWLPGSHEKISHQQLLYATNYFGE 651
Query: 404 NNFSGFGS---IYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM-------------- 446
+N G GS +YK + +G+ VAVKVF+L+++ AF+SFD C++M
Sbjct: 652 DNLIGKGSLSMVYKGVLSNGLTVAVKVFNLEFQGAFRSFDSECEVMQSIRHRNLVKIITC 711
Query: 447 ------KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
K LVLEYMP GSL+K LYS NY LD+ QRLNIMIDVA ALEYLH + ++HC
Sbjct: 712 CSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCPSLVVHC 771
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKED---QSFTQNTNTCHHRIYGT---------- 547
DLK +N+LL ++MVAH+ DFG+A+LL + + Q+ T T YG+
Sbjct: 772 DLKPNNILLDDDMVAHVGDFGIARLLTETESMQQTKTLGTIGYMAPEYGSDGIVSTKGDV 831
Query: 548 ------------RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595
R+ P F+G++TLKSWV L S++EVVD NLL ED+ F TK
Sbjct: 832 FSYGIMLMEVFARKKPMDEMFNGDLTLKSWVESLAD-SMIEVVDANLLRREDEDFATKLS 890
Query: 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLL 633
CLS + LA+ CT +SP++RI+ K+ V L KI+ LL
Sbjct: 891 CLSSIMALALACTTDSPEERIDMKDVVVGLKKIKIELL 928
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143445|emb|CBI22006.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 242/642 (37%), Positives = 343/642 (53%), Gaps = 104/642 (16%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
R+ L+++ +L IPS L + L+ LDLS N F+G IP +I ++S+L ++Y N L
Sbjct: 322 RLKFLSLAANNLKGEIPSSLLHCRELRLLDLSINQFTGFIPQAIGSLSNLETLYLGFNQL 381
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT-----DV--QI 165
G IP E+GNL+ L L ++ L+G I + IFN+SSL ++ ++N+L+ D+ +
Sbjct: 382 AGGIPGEIGNLSNLNLLNSASSGLSGPIPAEIFNISSLQEIGFANNSLSGSLPMDICKHL 441
Query: 166 PNLENLLLWGNNFSGAIPHF--IFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
PNL+ LLL N SG +P I N SKL + +++SF IP +FGNL L+ L+L +
Sbjct: 442 PNLQWLLLSLNQLSGQLPTTLEIGNLSKLEQIYFRRSSFTGTIPPSFGNLTALQHLDLGE 501
Query: 224 NYLTSSTPELSFLYSLSNCKYLE------------------QSSQSLEVFSMFNCNISGG 265
N + +S EL+FL SL+NC +L S SLE+ +C + G
Sbjct: 502 NNIQAS--ELAFLTSLTNCIFLRTLSISDNPLKGMIPNSLGNLSISLEIIYASDCQLRGT 559
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY 325
I ISNLTNL + L N L G IP +LQKLQ+LS N++ G IP C L +L
Sbjct: 560 IPTGISNLTNLIGLRLDDNDLTGLIPTPFGRLQKLQMLSISQNRIHGSIPSGLCHLTNLA 619
Query: 326 ELDLSGNKLSGSIPTCFGNQTSLR--ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI 383
LDLS NKLSG+IP+C GN T LR +L+L SN L S +P + N+K +L ++ NF +
Sbjct: 620 FLDLSSNKLSGTIPSCSGNLTGLRLLVLNLSSNFLNSQLPLQVGNMKSLLQGHIPPNFAL 679
Query: 384 SPLPLEIGNLKVLVGIDLSM---------------------NNFSGFGS---IYKARIQD 419
P + + + + +DLS+ +N G GS +YK + D
Sbjct: 680 CGAPRQTKS-ETPIQVDLSLPRMHRMIPHQELLYATNYFGEDNLIGKGSLGMVYKGVLSD 738
Query: 420 GMKVAVKVFDLQYERAFKSFDVACDMM--------------------KKLVLEYMPHGSL 459
G+ VAVKVF+L+ + AFKSF+V C++M K LVLEYMP+GSL
Sbjct: 739 GLIVAVKVFNLELQGAFKSFEVECEVMRNIRHRNLAKIISSCSNLDFKALVLEYMPNGSL 798
Query: 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSD 519
EK LYS NY LD QRL IMID L + GY P + +V+ D
Sbjct: 799 EKWLYSHNYYLDFVQRLKIMIDRTKTLGTV--GYMAPEYGSE----------GIVSTKGD 846
Query: 520 FGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579
+LL E +F R+ P F E+TLKSWV ++MEV+D
Sbjct: 847 IYSYGILLME--TF-------------VRKKPTDEMFVEELTLKSWVESSTN-NIMEVID 890
Query: 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKES 621
NLL+ ED+ F K+ C S + LA++CT E P++RIN K+S
Sbjct: 891 ANLLTEEDESFALKRACFSSIMTLALDCTVEPPEKRINTKDS 932
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740823|emb|CBI31005.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 355/682 (52%), Gaps = 109/682 (15%)
Query: 28 FLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSL-QTLDLSFN 86
LA NW+T S+ C W G+SC+ RV+ +N S + L TI ++GNLS L Q L+L N
Sbjct: 1 MLATNWSTKSSHCSWYGISCNAPQQRVSAINSSNMGLEGTIAPQVGNLSFLLQQLNLFNN 60
Query: 87 WFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFN 146
GSIP +I N+S L +Y NN L GEIP+++ NL L+ L N LTG+I ++IFN
Sbjct: 61 KLVGSIPEAICNLSKLEELYLGNNQLIGEIPKKMSNLLNLKILSFPMNNLTGSIPTTIFN 120
Query: 147 LSSLSDLDLSHNNLT-----DVQIPNLE--NLLLWGNNFSGAIPHFIFNASKLSILELQK 199
+SSL ++ LS+N+L+ D+ NL+ L L N+ SG +P I S L+IL L
Sbjct: 121 MSSLLNISLSYNSLSGSLPMDICYTNLKLKELNLSSNHLSGKVPTEIGILSNLNILHLAS 180
Query: 200 NSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCK--YLEQSS-------- 249
+ IP N+ +L R++ +N L+ P + L N + YL Q+
Sbjct: 181 SGINGPIPAEIFNISSLHRIDFTNNSLSGGLP-MDICKHLPNLQGLYLSQNHLRTIPEDI 239
Query: 250 ---QSLEVFSMFNCNISGGILEEISN-LTNLTAIYLAGNKLNGSIPI------TLCKLQK 299
L+ ++ ++SGG+ IS L +L +++ GN+ +G+IP+ T CK +
Sbjct: 240 FNISKLQTLALAQNHLSGGLPSSISTWLPDLEGLFIGGNEFSGTIPVGFLTSLTNCKFLR 299
Query: 300 LQLLSFVDNKLEGPIPYEFCRLA-SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358
+ + N L+G +P L+ +L S G+IPT GN T+L L L +N L
Sbjct: 300 TLWIDY--NPLKGTLPNSLGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDL 357
Query: 359 IS---------IIPSTLWNLKDI--------LYLNLSSNFFISPLPLE---------IGN 392
I+ L + I L++ N I P P++ I
Sbjct: 358 TGFQHSYTKSFILKYILLPVGSIVTLVAFIVLWIRRQDNTEI-PAPIDSWLPGAHEKISQ 416
Query: 393 LKVLVGI-DLSMNNFSGFGS---IYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM-- 446
++L D +N G GS +YK + +G+ VA+KVF+L+++ A +SFD C++M
Sbjct: 417 QQLLYATNDFGEDNLIGKGSLGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQG 476
Query: 447 ------------------KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEY 488
K LVLEYMP GSL+K LYS NY LD+FQRLNIMIDVALALEY
Sbjct: 477 ICHRNLIRIITCCSNLDFKALVLEYMPKGSLDKWLYSHNYFLDLFQRLNIMIDVALALEY 536
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED---QSFTQNTNTCHHRIY 545
LH S+ ++HCDLK SNVLL NNMVAH++DFG+A+LL + + Q+ T T Y
Sbjct: 537 LHHDCSSLVVHCDLKPSNVLLDNNMVAHVADFGIARLLTETESMQQTKTLGTIGYMAPEY 596
Query: 546 GT----------------------RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583
G+ R+ P F+G++TLK+WV L SV+EVVD NLL
Sbjct: 597 GSDGIVSTKGDVYSYGILLMEVFARKKPMDEMFTGDVTLKTWVES-LSSSVIEVVDANLL 655
Query: 584 SMEDKYFTTKKQCLSFVFNLAM 605
+++ TK LS + LA+
Sbjct: 656 RRDNEDLATKLSYLSSLMALAL 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143442|emb|CBI22003.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 264/763 (34%), Positives = 361/763 (47%), Gaps = 174/763 (22%)
Query: 2 EVDIDNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISG 61
E+++ +NHLS Q+ G L+ N T S + G ++R + NI+
Sbjct: 240 ELNLSSNHLSGQIPNGLGQCIKLQVISLSYNEFTGS-IPRGIGELVELRRLSLQN-NIN- 296
Query: 62 LSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELG 121
+L IPS L + LQ L LSFN F+G IP +I ++S+L +Y N L G IP+E+G
Sbjct: 297 -NLKGEIPSTLSHCRELQKLSLSFNQFTGRIPEAIGSLSNLEGLYLGYNKLAGGIPKEMG 355
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT-----DV--QIPNLENLLLW 174
NL L L L ++ L+G I + IFN+SSL ++ LS+N+ + D+ +PNL+ L L
Sbjct: 356 NLRNLNILSLTSSGLSGPIPTEIFNISSLQEIHLSNNSFSGSLPMDICEHLPNLKGLYLA 415
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP--- 231
N SG+ P I N SKL + L +NSF IP +FGNL L+ L L +N + + P
Sbjct: 416 INQLSGSTPREIGNLSKLEQIYLGRNSFTGTIPPSFGNLTALQDLQLGENNIQGNIPKEL 475
Query: 232 ---ELSFLYSLSNCKYLEQS------------------SQSLEVFSMFNCNISGGILEEI 270
EL+FL SL+NC L S SLE C + G I I
Sbjct: 476 GNSELAFLTSLTNCNSLRNLWISGNPLKGIIPNSLGNLSISLESIVASGCQLRGTIPTGI 535
Query: 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
S LTNL + L N L G IP + +LQKLQ+L F N++ GPIP C LA+L LDLS
Sbjct: 536 SYLTNLIDLRLDDNNLTGLIPTSSGRLQKLQVLYFSQNQIHGPIPSGLCHLANLGFLDLS 595
Query: 331 GNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW----------------------- 367
NKLSG+IP CFGN T LR + L SN L S +PS+LW
Sbjct: 596 SNKLSGTIPGCFGNLTLLRGIDLHSNGLASEVPSSLWTLRDLLVLNLSSNFLNSQLPLEV 655
Query: 368 -NLKDILYLNLSSNFFISPLP-------------------LEIGN--------------- 392
N+K ++ L+LS N F +P EI N
Sbjct: 656 GNMKSLVVLDLSKNQFSGNIPSTISLLQNLVQLHLSHNKLQEIPNGGPFANFTAESFISN 715
Query: 393 --LKVLVGIDLSM----------------------NNFSGFGS---IYKARIQDGMKVAV 425
L + V +DL++ N G GS +YK + DG+ VAV
Sbjct: 716 LALSLQVQVDLTLLPRMRPMISHQELLYATNYFDEENLIGKGSLGMVYKGVLSDGLIVAV 775
Query: 426 KVFDLQYERAFKSFDVACDMM--------------------KKLVLEYMPHGSLEKCLYS 465
KVF+++ + AFKSF+V ++M K LVLEYMP+GSLEK LYS
Sbjct: 776 KVFNVELQGAFKSFEVEYEVMQNIRHRNLAKITSSCYNLDFKALVLEYMPNGSLEKWLYS 835
Query: 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525
NY LD F + + GY P + +V+ D ++
Sbjct: 836 HNYFLDFFMKRTKTLGT--------IGYMAPEYGSE----------GIVSTKGDIYSYRI 877
Query: 526 LLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585
+L E +F R+ P F E+TLKSWV ++MEV+DVNLL
Sbjct: 878 MLME--TF-------------VRKKPTDEMFMEELTLKSWVESSTN-NIMEVIDVNLLIE 921
Query: 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
E + F K+ C S + LA +CTAE P++RIN K+ V RL KI
Sbjct: 922 EYENFALKQACFSSIRTLASDCTAEPPQKRINMKDVVVRLKKI 964
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143439|emb|CBI22000.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 261/774 (33%), Positives = 366/774 (47%), Gaps = 187/774 (24%)
Query: 12 FQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSE 71
+ + LK H+T D LA NW+++++ C+W GVSC+ R+T LN+S + L TIP +
Sbjct: 91 YALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTIPPQ 150
Query: 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131
+ NLS L +LDLS N+F S+P+ I N L +YF NN L G IP+ LGNL++LE +L
Sbjct: 151 VSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQSLGNLSKLEESYL 210
Query: 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLT--------DVQIPNLENLLLWGNNFSGAIP 183
+N LTG I + NL SL L L NNLT ++ + LE L L NN +G IP
Sbjct: 211 DSNHLTGDIPEEMSNLLSLKILSLFVNNLTGSIPSGIFNISLSKLEELYLGVNNLAGGIP 270
Query: 184 HFIFNA----------------------------SKLSILE---LQKNSFFDLIPNTFGN 212
+ N L +LE L +NS IP +FGN
Sbjct: 271 RGMGNLLNLKMLSLLQVLSSLSKNKFTGSIPIEIGNLPMLEEIYLGRNSLTGTIPPSFGN 330
Query: 213 LINLKRLNLYDNYLTSSTP-ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
L LK L+L +N + + P EL L SL N S+ + ++ G + E I
Sbjct: 331 LSALKVLDLQENNIQGNIPKELGCLLSLQN-------------LSLISNDLRGIVPEAIF 377
Query: 272 NLTNLTAIYLAGNKLNGSIP--ITLCKLQKLQLLSFVDNKL------------------- 310
N++ L +I LA N L+G++P I L L+ LQ L F +N+L
Sbjct: 378 NISKLQSISLADNHLSGNLPSSIDLGNLRSLQHLGFGNNELTGMIPTTLGQLQKLQQLII 437
Query: 311 -----EGPIPYEFC----------------------------RLASLYELDLSGNKLSGS 337
G IP + C +L +L EL LS N L G
Sbjct: 438 SGNRIHGSIPNDLCHSENLGSLLLSSNELSGPVPSYIPSSVGQLQNLVELSLSKNNLQGP 497
Query: 338 IPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN----------------- 380
IP FG+ SL L L N L IP +L L + +LN+S N
Sbjct: 498 IPLKFGDVVSLESLDLSWNNLSGTIPQSLEALIYLKHLNVSFNKRQGEIRNGGPFVNFTA 557
Query: 381 -FFIS------PLPLE---------IGNLKVLVGID-LSMNNFSG---FGSIYKARIQDG 420
FIS P+ ++ I + ++L + S N G G++YK + DG
Sbjct: 558 KSFISNEALYIPIQVDSSLPTTYRKISHQELLHATNYFSEGNLIGKGSMGTVYKGVLFDG 617
Query: 421 MKVAVKVFDLQYERAFKSFDVACDMM--------------------KKLVLEYMPHGSLE 460
+ A+KVF+L++ +FK F+ C++M K LVLE+MP+ SLE
Sbjct: 618 LTAAIKVFNLEFLGSFKGFEAECEVMRNIRHRNLIKIISSCSNLGFKALVLEFMPNRSLE 677
Query: 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDF 520
+ LYS NY LD+ QRLNIMIDVA ALEYLH YS P++HCDLK +NVLL + VAH+ DF
Sbjct: 678 RWLYSHNYCLDLIQRLNIMIDVASALEYLHHDYSNPVVHCDLKPNNVLLDEDRVAHVGDF 737
Query: 521 GMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDV 580
G+AKLL + Q T T + + + E + V S +V
Sbjct: 738 GIAKLLPGSESR--QQTKTLG----------PIGYMAPEYGSEGIV------STSDVYSN 779
Query: 581 NLLSMEDKYFTTKKQCLS-FVFNLAMECTAESPKQRINAKESVTRLLKIRDLLL 633
++ +E F KK FV + ++ + SP+ RIN ++ V RL KIR LL
Sbjct: 780 GIMLLE--VFARKKPTDEMFVGDPTLK--SWSPEDRINMRDVVARLKKIRIKLL 829
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085726|emb|CBI29526.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 253/738 (34%), Positives = 344/738 (46%), Gaps = 196/738 (26%)
Query: 58 NISGLSLT-----STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
N+ GLSL+ +P+ L L L LSFN F GSIP I N+S L IY N+L
Sbjct: 161 NLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNLSKLEEIYLGTNSL 220
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD-------VQI 165
G IP GNL L+ L L N LTGT+ +IFN+S L L + N+L+ +
Sbjct: 221 IGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWL 280
Query: 166 PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS------------------------ 201
P+LE L + GN FSG IP I N SKL++L L NS
Sbjct: 281 PDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVGFLTSLTNCKFLKNLWIGN 340
Query: 202 ---------------------------FFDLIPNTFGNLINLKRLNLYDNYLTSSTP--- 231
F IP GNL NL RL+L N LT S P
Sbjct: 341 IPFKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNLIRLDLGANDLTGSIPTTL 400
Query: 232 ----ELSFLY--------SLSNCKYL-----------------EQSSQSLEVFSMFNCN- 261
+L +LY S+ N YL S SL N +
Sbjct: 401 GQLQKLQWLYIAGNRIRGSIPNDLYLLALQELFLDSNVLAFNIPTSLWSLRDLLALNLSS 460
Query: 262 --ISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFC 319
++G + E+ N+ ++T + L+ N ++G IP + KLQ L LS N+L+GPIP EF
Sbjct: 461 NFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSKMGKLQSLITLSLSQNRLQGPIPIEFG 520
Query: 320 RLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSS 379
L SL LDLS N LSG+IP L+ L++ NKL IP+ ++N ++
Sbjct: 521 DLVSLESLDLSQNNLSGTIPKSLEALIYLKYLNVSLNKLQGEIPN------GGPFINFTA 574
Query: 380 NFFIS-----PLPLE---------IGNLKVLVGI-DLSMNNFSGFGS---IYKARIQDGM 421
FI P P++ I + ++L D +N G GS +YK + +G+
Sbjct: 575 ESFIRDNMEIPTPIDSWLPGTHEKISHQQLLYATNDFGEDNLIGKGSQGMVYKGVLSNGL 634
Query: 422 KVAVKVFDLQYERAFKSFDVACDMM--------------------KKLVLEYMPHGSLEK 461
VA+KVF+L+++ A +SFD C++M K LVLEYMP+GSLEK
Sbjct: 635 TVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRIITCCSNLDFKALVLEYMPNGSLEK 694
Query: 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521
LYS NY LD+ QRLNIMIDVA ALEYLH S+ ++HCDLK +NVLL ++MVAH++DFG
Sbjct: 695 WLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLVVHCDLKPNNVLLDDDMVAHVADFG 754
Query: 522 MAKLLLK-EDQSFTQNTNTCHHRI------------------YG-------TRRNPQMNF 555
+ KLL K E T+ T + YG +R+ P
Sbjct: 755 ITKLLTKTESMQQTKTLGTIGYMAPAEHGSDGIVSTKSDVYSYGILLMEVFSRKKPMDEM 814
Query: 556 FSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
F+G +TLK+WV+ CLS + LA+ CT SP++R
Sbjct: 815 FTGGLTLKTWVD----------------------------CLSSIMALALACTTNSPEKR 846
Query: 616 INAKESVTRLLKIRDLLL 633
+N K++V L K + LL
Sbjct: 847 LNMKDAVVELKKSKMKLL 864
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 249/702 (35%), Positives = 345/702 (49%), Gaps = 140/702 (19%)
Query: 59 ISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP- 117
I G L+ IP+ + N++ L LDLS+N +G +P + N+ SL + F NN L GE
Sbjct: 470 IGGNYLSGIIPASISNITKLTRLDLSYNLLTGFVPKDLGNLRSLQHLGFGNNQLSGEYST 529
Query: 118 EELG------NLAELETLWLQNNFLTGTIHSSIFNLS-SLSDLDLSHNNLTDV---QIPN 167
ELG N L LW+Q+N L GT+ +S+ NLS SL ++ S V I N
Sbjct: 530 SELGFLTSLSNCKFLRNLWIQDNPLKGTLPNSLGNLSLSLQSINASACQFKGVIPAGIGN 589
Query: 168 LENLLLWG---NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
L NL+ G N+ +G IP + KL L + N +PN G+L NL L L N
Sbjct: 590 LTNLIELGLGDNDLTGMIPTTLGQLKKLQRLYIAGNRIHGSVPNGIGHLANLVYLFLSSN 649
Query: 225 YLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGN 284
L+ P S L+SL+ + SS L +G + E+ ++ +T + L+ N
Sbjct: 650 QLSGLVP--SSLWSLNRLLVVNLSSNFL----------TGDLPVEVGSMKTITKLDLSQN 697
Query: 285 KLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFC------------------------R 320
+ +G IP T+ +L L LS N+L+GPIP EF
Sbjct: 698 QFSGHIPSTMGQLGGLVELSLSKNRLQGPIPREFGNLLSLESLDLSWNNLSGAIPRSLEA 757
Query: 321 LASLYELDLSGNKLSGSIP--TCFGNQTS--------------LRILSLDSNKLISIIPS 364
L SL L++S NKL G IP F N T+ +I+ + + +
Sbjct: 758 LVSLKYLNVSFNKLEGEIPDKGPFANFTTESFISNAGLCGAPRFQIIECEKDASGQSRNA 817
Query: 365 TLWNLKDILYLNLSSNFFI------------SPLPLEI-----GNLKVLVGIDL------ 401
T + LK IL +++ F+ S P ++ G L+ + +L
Sbjct: 818 TSFLLKCILIPVVAAMVFVAFVVLIRRRRSKSKAPAQVNSFHLGKLRRISHQELIYATNY 877
Query: 402 -SMNNFSGFGS---IYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM----------- 446
+N G GS +++ + DG VAVKVF+L+++ AFKSFD C++M
Sbjct: 878 FGEDNMIGTGSLGMVHRGVLSDGSIVAVKVFNLEFQGAFKSFDAECEIMRNIQHRNLVKI 937
Query: 447 ---------KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST-P 496
K LVLEYMP+GSLEK LYS NY L++ QRLNIMIDVA ALEYLH +S P
Sbjct: 938 ISSCSILNFKALVLEYMPNGSLEKWLYSHNYCLNLVQRLNIMIDVASALEYLHHDFSVNP 997
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE---DQSFTQNTNTCHHRIYGT------ 547
++HCDLK +NVLL MVA L DFG++KLL + +Q+ T T YG+
Sbjct: 998 VVHCDLKPNNVLLDEEMVARLGDFGISKLLTETESMEQTRTLGTIGYMAPEYGSEGIVST 1057
Query: 548 ----------------RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591
R+ P F GE+TL+SWV L VMEVVD NL+ ED++F
Sbjct: 1058 RGDVYSYGIMMMETFARKKPTDEMFGGEVTLRSWVESLAG-RVMEVVDGNLVRREDQHFG 1116
Query: 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLL 633
K+ CL + LA+ECT ESP+ RI+ KE V RL KIR LL
Sbjct: 1117 IKESCLRSIMALALECTTESPRDRIDMKEVVVRLKKIRIKLL 1158
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 639 | ||||||
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.566 | 0.323 | 0.352 | 1.1e-62 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.611 | 0.313 | 0.333 | 1.8e-60 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.532 | 0.336 | 0.338 | 6.2e-60 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.588 | 0.320 | 0.307 | 2.4e-59 | |
| TAIR|locus:2138268 | 1045 | AT4G08850 [Arabidopsis thalian | 0.586 | 0.358 | 0.322 | 1.9e-58 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.519 | 0.328 | 0.331 | 4.9e-58 | |
| TAIR|locus:2047525 | 980 | AT2G24130 [Arabidopsis thalian | 0.589 | 0.384 | 0.322 | 2.3e-57 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.697 | 0.442 | 0.282 | 2.1e-38 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.544 | 0.339 | 0.345 | 5.3e-57 | |
| TAIR|locus:2032697 | 1123 | PEPR1 "PEP1 receptor 1" [Arabi | 0.582 | 0.331 | 0.328 | 6.5e-55 |
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 136/386 (35%), Positives = 191/386 (49%)
Query: 32 NWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPS-ELGNLSSLQTLDLSFNWFSG 90
N NTS + W GVSC+ R + LN++ + T +LS+L +DLS N SG
Sbjct: 58 NTNTSFSCTSWYGVSCNSRG-SIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSG 116
Query: 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTXXXXXXXXXXX 150
+IP N+S L+ + N L GEI LGNL L L+L N+LT
Sbjct: 117 TIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESM 176
Query: 151 XXXXXXXXXXTDVQIP----NLENLL---LWGNNFSGAIPHFIFNASKLSILELQKNSFF 203
T IP NL+NL+ L+ N +G IP + N ++ L L +N
Sbjct: 177 TDLALSQNKLTG-SIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLT 235
Query: 204 DLIPNTFGNLINLKRLNLYDNYLTSSTP-ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262
IP+T GNL NL L LY+NYLT P E+ + S++N L Q+ +
Sbjct: 236 GSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLA-LSQNK------------L 282
Query: 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322
+G I + NL NLT + L N L G IP L ++ + L +NKL G IP L
Sbjct: 283 TGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLK 342
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
+L L L N L+G IP GN S+ L L++NKL IPS+ NLK++ YL L N+
Sbjct: 343 NLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYL 402
Query: 383 ISPLPLEIGNLKVLVGIDLSMNNFSG 408
+P E+GN++ ++ +DLS N +G
Sbjct: 403 TGVIPQELGNMESMINLDLSQNKLTG 428
|
|
| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 138/414 (33%), Positives = 198/414 (47%)
Query: 5 IDNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSS-TVCHWTGVSCDVRS-YRVTTLNISGL 62
I NN L + V K VT+ + + WN+ + C WTGV+CD +RV LN++GL
Sbjct: 22 IINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGL 81
Query: 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGN 122
LT +I G +L LDLS N G IP+++ N++SL S++ +N L GEIP +LG+
Sbjct: 82 GLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGS 141
Query: 123 LAELETLWLQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTDVQIPN-------LENLLLWG 175
L + +L + +N L G T IP+ +++L+L
Sbjct: 142 LVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTG-PIPSQLGRLVRVQSLILQD 200
Query: 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
N G IP + N S L++ +N IP G L NL+ LNL +N LT P S
Sbjct: 201 NYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP--SQ 258
Query: 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295
L +S +YL SL M N + G I + +++L NL + L+ N L G IP
Sbjct: 259 LGEMSQLQYL-----SL----MAN-QLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFW 308
Query: 296 KLQKLQLLSFVDNKLEGPIPYEFC-RLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLD 354
+ +L L +N L G +P C +L +L LSG +LSG IP SL+ L L
Sbjct: 309 NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLS 368
Query: 355 SNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
+N L IP L+ L ++ L L +N L I NL L + L NN G
Sbjct: 369 NNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEG 422
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 6.2e-60, Sum P(3) = 6.2e-60
Identities = 126/372 (33%), Positives = 171/372 (45%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYFNNNT 111
++ +L + + + P L NLSSL+ L + +N FSG + P + +LLS N
Sbjct: 211 QIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNY 270
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTD--------V 163
G IP L N++ LE L + N LTG+ +D
Sbjct: 271 FTGSIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLT 330
Query: 164 QIPN---LENLLLWGNNFSGAIPHFIFNAS-KLSILELQKNSFFDLIPNTFGNLINLKRL 219
+ N LE L + N G +P I N S KL L+L IP GNLINL++L
Sbjct: 331 SLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279
L N L+ P + L L N +YL S+F+ +SGGI I N+T L +
Sbjct: 391 ILDQNMLSGPLP--TSLGKLLNLRYL----------SLFSNRLSGGIPAFIGNMTMLETL 438
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339
L+ N G +P +L L L DNKL G IP E ++ L LD+SGN L GS+P
Sbjct: 439 DLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLP 498
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGI 399
G +L LSL NKL +P TL N + L L N F +P +LK LVG+
Sbjct: 499 QDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP----DLKGLVGV 554
Query: 400 ---DLSMNNFSG 408
DLS N+ SG
Sbjct: 555 KEVDLSNNDLSG 566
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 2.4e-59, Sum P(4) = 2.4e-59
Identities = 123/400 (30%), Positives = 191/400 (47%)
Query: 18 KGHVTDDPTNFLAKNWNTSSTV--CHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNL 75
K +++DP L+ +W ++ C+WTG++CD + V ++++ L + + NL
Sbjct: 38 KNGISNDPLGVLS-DWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIANL 95
Query: 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135
+ LQ LDL+ N F+G IP+ I ++ L + N G IP + L + L L+NN
Sbjct: 96 TYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNL 155
Query: 136 LTGTXXXXXXXXXXXXXXXXXXXXXTDVQIP----NLENLLLW---GNNFSGAIPHFIFN 188
L+G T +IP +L +L ++ GN+ +G+IP I
Sbjct: 156 LSGDVPEEICKTSSLVLIGFDYNNLTG-KIPECLGDLVHLQMFVAAGNHLTGSIPVSIGT 214
Query: 189 ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
+ L+ L+L N IP FGNL+NL+ L L +N L P + NC L Q
Sbjct: 215 LANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPA-----EIGNCSSLVQ- 268
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308
LE++ N ++G I E+ NL L A+ + NKL SIP +L +L +L L +N
Sbjct: 269 ---LELYD--N-QLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSEN 322
Query: 309 KLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN 368
L GPI E L SL L L N +G P N +L +L++ N + +P+ L
Sbjct: 323 HLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL 382
Query: 369 LKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
L ++ L+ N P+P I N L +DLS N +G
Sbjct: 383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTG 422
|
|
| TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 130/403 (32%), Positives = 196/403 (48%)
Query: 18 KGHVTDDPTNFLAKNW---NTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPS-ELG 73
K T+ ++ +W NTSS W GV+C + S + LN++ + T
Sbjct: 58 KSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGS--IIRLNLTNTGIEGTFEDFPFS 115
Query: 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY-FNNNTLFGEIPEELGNLAELETLWLQ 132
+L +L +DLS N FSG+I S ++ S L + + N L GEIP ELG+L+ L+TL L
Sbjct: 116 SLPNLTFVDLSMNRFSGTI-SPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLV 174
Query: 133 NNFLTGTXXXXXXXXXXXXXXXXXXXXXTDVQIPN-------LENLLLWGNNFSGAIPHF 185
N L G+ T IP+ L NL L+ N+ SG+IP
Sbjct: 175 ENKLNGSIPSEIGRLTKVTEIAIYDNLLTG-PIPSSFGNLTKLVNLYLFINSLSGSIPSE 233
Query: 186 IFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYL 245
I N L L L +N+ IP++FGNL N+ LN+++N L+ P + N
Sbjct: 234 IGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPP-----EIGNMT-- 286
Query: 246 EQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSF 305
+L+ S+ ++G I + N+ L ++L N+LNGSIP L +++ + L
Sbjct: 287 -----ALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEI 341
Query: 306 VDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365
+NKL GP+P F +L +L L L N+LSG IP N T L +L LD+N +P T
Sbjct: 342 SENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDT 401
Query: 366 LWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
+ + L L N F P+P + + K L+ + N+FSG
Sbjct: 402 ICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSG 444
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 4.9e-58, Sum P(4) = 4.9e-58
Identities = 122/368 (33%), Positives = 170/368 (46%)
Query: 61 GLSLTS---TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM-SSLLSIYFNNNTLFGEI 116
GLS+ P + NLS+L+ L L + FSGS+ N+ ++ + N L G I
Sbjct: 216 GLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAI 275
Query: 117 PEELGNLAELETLWLQNNFLTGTXXXXXXXXXXXXXXXXX-----XXXXTDVQ-IPNLEN 170
P L N++ L+ + N +TG D++ I +L N
Sbjct: 276 PTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDSLTN 335
Query: 171 -----LLLWG-NNFSGAIPHFIFNAS-KLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
LL G GA+P I N S +L L L N FF IP GNLI L+RL L
Sbjct: 336 CTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGK 395
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N LT P SL K L L + S+++ +SG I I NLT L +YL+
Sbjct: 396 NMLTGPLPT-----SLG--KLLR-----LGLLSLYSNRMSGEIPSFIGNLTQLEILYLSN 443
Query: 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFG 343
N G +P +L K + L NKL G IP E ++ +L L + GN LSGS+P G
Sbjct: 444 NSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIG 503
Query: 344 NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGI---D 400
+ +L LSL++NK +P TL N + L L N F +P N++ L+G+ D
Sbjct: 504 SLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIP----NIRGLMGVRRVD 559
Query: 401 LSMNNFSG 408
LS N+ SG
Sbjct: 560 LSNNDLSG 567
|
|
| TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 2.3e-57, Sum P(3) = 2.3e-57
Identities = 132/409 (32%), Positives = 200/409 (48%)
Query: 24 DPTNFLAKNWNTSST--------VCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNL 75
+P N L+ +W +SS+ VC+W+GV C+ S +V L+ISG L I + NL
Sbjct: 31 NPQNSLS-SWISSSSSSSSMLVDVCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANL 89
Query: 76 SSLQTLDLSFNWFSGSIPSSIFNM-SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134
+ L LDLS N+F G IP I ++ +L + + N L G IP+ELG L L L L +N
Sbjct: 90 TGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSN 149
Query: 135 FLTGTXXXXXXXXXXXXXXXXXXXXXTDV--QIP--------NLENLLLWGNNFSGAIPH 184
L G+ + +IP L LLLW N +G +P
Sbjct: 150 RLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPS 209
Query: 185 FIFNASKLSILELQKNSFFDLIPN-TFGNLINLKRLNL-YDNYLT--SSTPELSFLYSLS 240
+ N++ L ++L+ N +P+ + L+ L L Y+++++ ++T F SL+
Sbjct: 210 SLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLA 269
Query: 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT-NLTAIYLAGNKLNGSIPITLCKLQK 299
N L Q LE+ N ++ G I + +L+ NL I+L N+++GSIP + L
Sbjct: 270 NSSDL----QELELAG--N-SLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLN 322
Query: 300 LQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359
L LL+ N L GPIP E C+L+ L + LS N L+G IP G+ L +L + N L
Sbjct: 323 LTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLS 382
Query: 360 SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
IP + NL + L L N +P +G L +DLS NN +G
Sbjct: 383 GSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTG 431
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 140/496 (28%), Positives = 231/496 (46%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116
L++S S TIP E+GNL L+ L + FN+ G IP+S+ N S LL + +N L +
Sbjct: 95 LDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLGDGV 154
Query: 117 PEELGNLAELETLWLQNNFLTGTXXXXXXXXXXXXXXXXXXXXXT-----DV-QIPNLEN 170
P ELG+L +L L+L N L G D+ + + +
Sbjct: 155 PSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQMVS 214
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI-NLKRLNLYDNYLTSS 229
L L NNFSG P +N S L L L N F + FGNL+ N+ L+L+ N+LT +
Sbjct: 215 LTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFLTGA 274
Query: 230 TP----ELSFLY------------------SLSNCKYLEQSSQSLEVFSMFNCNISGGIL 267
P +S L L N YLE ++ SL +S + L
Sbjct: 275 IPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDL----AFL 330
Query: 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQ-KLQLLSFVDNKLEGPIPYEFCRLASLYE 326
+ ++N ++L + ++ N+L G++P ++ + +L +L+ N + G IP++ L L
Sbjct: 331 DALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQS 390
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL 386
L L+ N L+G +PT GN L L L SN+ IPS + NL ++ L LS+N F +
Sbjct: 391 LLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIV 450
Query: 387 PLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM 446
P +G+ ++ + + N +G +I K + M++ V L E S + D+
Sbjct: 451 PPSLGDCSHMLDLQIGYNKLNG--TIPK----EIMQIPTLVH-LNMESNSLSGSLPNDIG 503
Query: 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDV-ALALEYLHFGYSTPIIHCDLKLS 505
+ L+ + +E L ++N + Q L + + + L+ HF + P I + +
Sbjct: 504 R---LQNL----VELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIKGLMGVK 556
Query: 506 NV-LLGNNMVAHLSDF 520
NV L NN+ +S++
Sbjct: 557 NVDLSNNNLSGSISEY 572
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 5.3e-57, Sum P(3) = 5.3e-57
Identities = 127/368 (34%), Positives = 182/368 (49%)
Query: 53 RVTTLNISGLSLTSTIPSELG-NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT 111
++T+L++S L IP E+G +L L L L N SG IPS++ N++SL + N
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTDVQIPN---- 167
L G IP LG L+ L T+ L N L+G + IP
Sbjct: 212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGM-IPTNAFK 270
Query: 168 ----LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
LE + + N F G IP + NAS L+++++ N F +I + FG L NL L L+
Sbjct: 271 TLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWR 330
Query: 224 N-YLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL-TNLTAIYL 281
N + T + F+ L+NC L+ ++ N+ G + SNL T+L+ + L
Sbjct: 331 NLFQTREQDDWGFISDLTNCS-------KLQTLNLGENNLGGVLPNSFSNLSTSLSFLAL 383
Query: 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTC 341
NK+ GSIP + L LQ L +N G +P RL +L L N LSGSIP
Sbjct: 384 ELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLA 443
Query: 342 FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL-VGID 400
GN T L IL L +NK IP TL NL ++L L LS+N P+P E+ N++ L + I+
Sbjct: 444 IGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMIN 503
Query: 401 LSMNNFSG 408
+S NN G
Sbjct: 504 VSKNNLEG 511
|
|
| TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 6.5e-55, Sum P(3) = 6.5e-55
Identities = 134/408 (32%), Positives = 199/408 (48%)
Query: 16 VLKGHVTDDPTNFLAKNW--NTS-STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSEL 72
+LK H+ P + W N S +T C+W G++CD S V +LN + ++ + E+
Sbjct: 39 LLK-HLDRVPPQ-VTSTWKINASEATPCNWFGITCD-DSKNVASLNFTRSRVSGQLGPEI 95
Query: 73 GNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132
G L SLQ LDLS N FSG+IPS++ N + L ++ + N +IP+ L +L LE L+L
Sbjct: 96 GELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY 155
Query: 133 NNFLTGTXXXXXXXXXXXXXXXXXXXXXTDVQIPNLENLLLWGNNFSGAIPHFIFNASKL 192
NFLTG +IP L+ L L NN +G IP I +A +L
Sbjct: 156 INFLTGELPESLF------------------RIPKLQVLYLDYNNLTGPIPQSIGDAKEL 197
Query: 193 SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE-LSFLYSLSNCKYLEQSSQS 251
L + N F IP + GN +L+ L L+ N L S PE L+ L +L+ S Q
Sbjct: 198 VELSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQG 257
Query: 252 LEVFSMFNC-NI----------SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKL 300
F NC N+ GG+ + N ++L A+ + L+G+IP +L L+ L
Sbjct: 258 PVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNL 317
Query: 301 QLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS 360
+L+ +N+L G IP E +SL L L+ N+L G IP+ G L L L N+
Sbjct: 318 TILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSG 377
Query: 361 IIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
IP +W + + L + N LP+E+ +K L L N+F G
Sbjct: 378 EIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYG 425
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.11.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00014285001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1016 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 639 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-53 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-42 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-42 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-30 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 2e-21 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 4e-20 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 5e-20 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 1e-19 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 2e-17 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 4e-17 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 1e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-14 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 3e-13 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 8e-12 | |
| cd05579 | 265 | cd05579, STKc_MAST_like, Catalytic domain of Micro | 2e-11 | |
| cd08215 | 258 | cd08215, STKc_Nek, Catalytic domain of the Protein | 2e-11 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 6e-11 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-11 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 2e-10 | |
| cd07840 | 287 | cd07840, STKc_CDK9_like, Catalytic domain of Cycli | 2e-10 | |
| cd06614 | 286 | cd06614, STKc_PAK, Catalytic domain of the Protein | 3e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| cd05581 | 280 | cd05581, STKc_PDK1, Catalytic domain of the Protei | 2e-09 | |
| cd07829 | 282 | cd07829, STKc_CDK_like, Catalytic domain of Cyclin | 2e-09 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 3e-09 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 3e-09 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 2e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-08 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 4e-08 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 5e-08 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 6e-08 | |
| cd05035 | 273 | cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li | 8e-08 | |
| cd08217 | 265 | cd08217, STKc_Nek2, Catalytic domain of the Protei | 1e-07 | |
| cd05094 | 291 | cd05094, PTKc_TrkC, Catalytic domain of the Protei | 2e-07 | |
| cd06612 | 256 | cd06612, STKc_MST1_2, Catalytic domain of the Prot | 3e-07 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 5e-07 | |
| cd08530 | 256 | cd08530, STKc_CNK2-like, Catalytic domain of the P | 5e-07 | |
| cd05066 | 267 | cd05066, PTKc_EphR_A, Catalytic domain of the Prot | 5e-07 | |
| cd07864 | 302 | cd07864, STKc_CDK12, Catalytic domain of the Serin | 6e-07 | |
| cd06611 | 280 | cd06611, STKc_SLK_like, Catalytic domain of Ste20- | 7e-07 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 8e-07 | |
| cd06632 | 258 | cd06632, STKc_MEKK1_plant, Catalytic domain of the | 9e-07 | |
| cd06626 | 264 | cd06626, STKc_MEKK4, Catalytic domain of the Prote | 1e-06 | |
| cd05583 | 288 | cd05583, STKc_MSK_N, N-terminal catalytic domain o | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-06 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 2e-06 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 2e-06 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 2e-06 | |
| cd06613 | 262 | cd06613, STKc_MAP4K3_like, Catalytic domain of Mit | 2e-06 | |
| cd05610 | 669 | cd05610, STKc_MASTL, Catalytic domain of the Prote | 2e-06 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 3e-06 | |
| cd05080 | 283 | cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma | 3e-06 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 3e-06 | |
| cd07841 | 298 | cd07841, STKc_CDK7, Catalytic domain of the Serine | 3e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-06 | |
| cd05115 | 257 | cd05115, PTKc_Zap-70, Catalytic domain of the Prot | 4e-06 | |
| cd05063 | 268 | cd05063, PTKc_EphR_A2, Catalytic domain of the Pro | 4e-06 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 4e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-06 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 5e-06 | |
| cd08220 | 256 | cd08220, STKc_Nek8, Catalytic domain of the Protei | 5e-06 | |
| cd05040 | 257 | cd05040, PTKc_Ack_like, Catalytic domain of the Pr | 6e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-06 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 8e-06 | |
| cd05578 | 258 | cd05578, STKc_Yank1, Catalytic domain of the Prote | 8e-06 | |
| cd05614 | 332 | cd05614, STKc_MSK2_N, N-terminal catalytic domain | 1e-05 | |
| cd05074 | 273 | cd05074, PTKc_Tyro3, Catalytic domain of the Prote | 1e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-05 | |
| cd05079 | 284 | cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma | 2e-05 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 2e-05 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 2e-05 | |
| cd06917 | 277 | cd06917, STKc_NAK1_like, Catalytic domain of Funga | 2e-05 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 2e-05 | |
| cd07845 | 309 | cd07845, STKc_CDK10, Catalytic domain of the Serin | 2e-05 | |
| cd05111 | 279 | cd05111, PTK_HER3, Pseudokinase domain of the Prot | 2e-05 | |
| cd06644 | 292 | cd06644, STKc_STK10_LOK, Catalytic domain of the P | 3e-05 | |
| cd06608 | 275 | cd06608, STKc_myosinIII_like, Catalytic domain of | 3e-05 | |
| cd05088 | 303 | cd05088, PTKc_Tie2, Catalytic domain of the Protei | 4e-05 | |
| cd07832 | 286 | cd07832, STKc_CCRK, Catalytic domain of the Serine | 5e-05 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 5e-05 | |
| PTZ00283 | 496 | PTZ00283, PTZ00283, serine/threonine protein kinas | 6e-05 | |
| cd05118 | 283 | cd05118, STKc_CMGC, Catalytic domain of CMGC famil | 6e-05 | |
| cd07855 | 334 | cd07855, STKc_ERK5, Catalytic domain of the Serine | 6e-05 | |
| cd05113 | 256 | cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro | 7e-05 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 9e-05 | |
| cd07833 | 288 | cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep | 9e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-04 | |
| cd05060 | 257 | cd05060, PTKc_Syk_like, Catalytic domain of Spleen | 1e-04 | |
| cd05093 | 288 | cd05093, PTKc_TrkB, Catalytic domain of the Protei | 1e-04 | |
| cd07834 | 330 | cd07834, STKc_MAPK, Catalytic domain of the Serine | 1e-04 | |
| cd08528 | 269 | cd08528, STKc_Nek10, Catalytic domain of the Prote | 1e-04 | |
| cd05089 | 297 | cd05089, PTKc_Tie1, Catalytic domain of the Protei | 1e-04 | |
| cd07843 | 293 | cd07843, STKc_CDC2L1, Catalytic domain of the Seri | 1e-04 | |
| cd05065 | 269 | cd05065, PTKc_EphR_B, Catalytic domain of the Prot | 1e-04 | |
| cd06607 | 307 | cd06607, STKc_TAO, Catalytic domain of the Protein | 2e-04 | |
| cd05081 | 284 | cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) | 2e-04 | |
| cd05611 | 260 | cd05611, STKc_Rim15_like, Catalytic domain of fung | 2e-04 | |
| cd06610 | 267 | cd06610, STKc_OSR1_SPAK, Catalytic domain of the P | 2e-04 | |
| cd06605 | 265 | cd06605, PKc_MAPKK, Catalytic domain of the dual-s | 2e-04 | |
| cd07852 | 337 | cd07852, STKc_MAPK15, Catalytic domain of the Seri | 3e-04 | |
| cd06647 | 293 | cd06647, STKc_PAK_I, Catalytic domain of the Prote | 3e-04 | |
| cd06648 | 285 | cd06648, STKc_PAK_II, Catalytic domain of the Prot | 3e-04 | |
| cd08225 | 257 | cd08225, STKc_Nek5, Catalytic domain of the Protei | 4e-04 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 4e-04 | |
| cd05580 | 290 | cd05580, STKc_PKA, Catalytic domain of the Protein | 4e-04 | |
| cd05570 | 318 | cd05570, STKc_PKC, Catalytic domain of the Protein | 4e-04 | |
| cd05075 | 272 | cd05075, PTKc_Axl, Catalytic domain of the Protein | 4e-04 | |
| cd05589 | 324 | cd05589, STKc_PKN, Catalytic domain of the Protein | 4e-04 | |
| cd06640 | 277 | cd06640, STKc_MST4, Catalytic domain of the Protei | 6e-04 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 6e-04 | |
| cd08529 | 256 | cd08529, STKc_FA2-like, Catalytic domain of the Pr | 6e-04 | |
| cd06628 | 267 | cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o | 7e-04 | |
| cd05087 | 269 | cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t | 0.001 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 0.001 | |
| cd05573 | 350 | cd05573, STKc_ROCK_NDR_like, Catalytic domain of R | 0.001 | |
| cd06654 | 296 | cd06654, STKc_PAK1, Catalytic domain of the Protei | 0.001 | |
| cd05050 | 288 | cd05050, PTKc_Musk, Catalytic domain of the Protei | 0.001 | |
| cd05572 | 262 | cd05572, STKc_cGK_PKG, Catalytic domain of the Pro | 0.001 | |
| cd07866 | 311 | cd07866, STKc_BUR1, Catalytic domain of the Serine | 0.001 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| PTZ00263 | 329 | PTZ00263, PTZ00263, protein kinase A catalytic sub | 0.002 | |
| PLN00034 | 353 | PLN00034, PLN00034, mitogen-activated protein kina | 0.002 | |
| cd06646 | 267 | cd06646, STKc_MAP4K5, Catalytic domain of the Prot | 0.002 | |
| cd07846 | 286 | cd07846, STKc_CDKL2_3, Catalytic domain of the Ser | 0.002 | |
| cd05053 | 293 | cd05053, PTKc_FGFR, Catalytic domain of the Protei | 0.002 | |
| cd07830 | 283 | cd07830, STKc_MAK_like, Catalytic domain of Male g | 0.002 | |
| cd05613 | 290 | cd05613, STKc_MSK1_N, N-terminal catalytic domain | 0.002 | |
| cd06651 | 266 | cd06651, STKc_MEKK3, Catalytic domain of the Prote | 0.002 | |
| cd05596 | 370 | cd05596, STKc_ROCK, Catalytic domain of the Protei | 0.002 | |
| cd05590 | 320 | cd05590, STKc_nPKC_eta, Catalytic domain of the Pr | 0.003 | |
| cd05110 | 303 | cd05110, PTKc_HER4, Catalytic domain of the Protei | 0.003 | |
| cd06621 | 287 | cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of | 0.003 | |
| cd05072 | 261 | cd05072, PTKc_Lyn, Catalytic domain of the Protein | 0.003 | |
| cd07853 | 372 | cd07853, STKc_NLK, Catalytic domain of the Serine/ | 0.003 | |
| cd05090 | 283 | cd05090, PTKc_Ror1, Catalytic domain of the Protei | 0.004 | |
| cd06655 | 296 | cd06655, STKc_PAK2, Catalytic domain of the Protei | 0.004 | |
| cd05571 | 323 | cd05571, STKc_PKB, Catalytic domain of the Protein | 0.004 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 0.004 | |
| cd05588 | 329 | cd05588, STKc_aPKC, Catalytic domain of the Protei | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 4e-53
Identities = 149/419 (35%), Positives = 212/419 (50%), Gaps = 51/419 (12%)
Query: 23 DDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNL------- 75
+DP +L+ NWN+S+ VC W G++C+ S RV ++++SG +++ I S + L
Sbjct: 42 NDPLKYLS-NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN 99
Query: 76 ------------------SSLQTLDLSFNWFSGSIPS-SIFNMSSLLSIYFNNNTLFGEI 116
SSL+ L+LS N F+GSIP SI N+ +L +NN L GEI
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL---DLSNNMLSGEI 156
Query: 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP-------NLE 169
P ++G+ + L+ L L N L G I +S+ NL+SL L L+ N L QIP +L+
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLK 215
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
+ L NN SG IP+ I + L+ L+L N+ IP++ GNL NL+ L LY N L+
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS 289
P F SL L+ S SL SG I E + L NL ++L N G
Sbjct: 276 IPPSIF--SLQKLISLDLSDNSL----------SGEIPELVIQLQNLEILHLFSNNFTGK 323
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLR 349
IP+ L L +LQ+L NK G IP + +L LDLS N L+G IP + +L
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383
Query: 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
L L SN L IP +L + + + L N F LP E L ++ +D+S NN G
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 2e-42
Identities = 124/357 (34%), Positives = 175/357 (49%), Gaps = 24/357 (6%)
Query: 53 RVTTLNISGL---SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNN 109
+T+LN L +LT IPS LGNL +LQ L L N SG IP SIF++ L+S+ ++
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293
Query: 110 NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP--- 166
N+L GEIPE + L LE L L +N TG I ++ +L L L L N + +IP
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG-EIPKNL 352
Query: 167 ----NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
NL L L NN +G IP + ++ L L L NS IP + G +L+R+ L
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412
Query: 223 DNYLTSSTPE------LSFLYSLSNCKYLEQSSQ------SLEVFSMFNCNISGGILEEI 270
DN + P L + +SN + + SL++ S+ GG L +
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG-LPDS 471
Query: 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
L + L+ N+ +G++P L L +L L +NKL G IP E L LDLS
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531
Query: 331 GNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387
N+LSG IP F L L L N+L IP L N++ ++ +N+S N LP
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 6e-42
Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 29/369 (7%)
Query: 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGN 122
+L+ IP E+G L+SL LDL +N +G IPSS+ N+ +L ++ N L G IP + +
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282
Query: 123 LAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD------VQIPNLENLLLWGN 176
L +L +L L +N L+G I + L +L L L NN T +P L+ L LW N
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
FSG IP + + L++L+L N+ IP + NL +L L+ N L P+
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK---- 398
Query: 237 YSLSNCKYLEQ-----SSQSLEVFSMF------------NCNISGGILEEISNLTNLTAI 279
SL C+ L + +S S E+ S F N N+ G I ++ +L +
Sbjct: 399 -SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339
LA NK G +P ++L+ L N+ G +P + L+ L +L LS NKLSG IP
Sbjct: 458 SLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGI 399
+ L L L N+L IP++ + + L+LS N +P +GN++ LV +
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576
Query: 400 DLSMNNFSG 408
++S N+ G
Sbjct: 577 NISHNHLHG 585
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 85/294 (28%), Positives = 137/294 (46%), Gaps = 43/294 (14%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
R+ L + + IP LG ++L LDLS N +G IP + + +L + +N+L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT------DVQIP 166
GEIP+ LG L + LQ+N +G + S L + LD+S+NNL +P
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
+L+ L L N F G +P F + +L L+L +N F +P G+L L +L L +N
Sbjct: 453 SLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-- 509
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
+SG I +E+S+ L ++ L+ N+L
Sbjct: 510 ----------------------------------KLSGEIPDELSSCKKLVSLDLSHNQL 535
Query: 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT 340
+G IP + ++ L L N+L G IP + SL ++++S N L GS+P+
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-21
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYE-RAFKSFDVACDMMKKL---------------- 449
GFG++Y AR + G KVA+K+ + + +++KKL
Sbjct: 5 GFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDEN 64
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
V+EY GSL+ L + L + L I++ + LEYLH S IIH DLK
Sbjct: 65 HLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPE 121
Query: 506 NVLLGN-NMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
N+LL + N L+DFG++KLL + T +
Sbjct: 122 NILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYM 160
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAF-KSFDVACDMMKKL---------------- 449
FG +Y AR + G VA+KV + + + ++KKL
Sbjct: 11 SFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDED 70
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
V+EY G L L L + + + ALEYLH S I+H DLK
Sbjct: 71 KLYLVMEYCEGGDLFDLL-KKRGRLSEDEARFYLRQILSALEYLH---SKGIVHRDLKPE 126
Query: 506 NVLLGNNMVAHLSDFGMAKLL 526
N+LL + L+DFG+A+ L
Sbjct: 127 NILLDEDGHVKLADFGLARQL 147
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 409 FGSIYKARI-----QDGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG +YK + KVAVK E + F +MKKL
Sbjct: 12 FGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGVCT 71
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
V EYMP G L L L + L + + +A +EYL S +H DL
Sbjct: 72 QGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLE---SKNFVHRDL 128
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
N L+ N+V +SDFG+++ + ++D
Sbjct: 129 AARNCLVTENLVVKISDFGLSRDIYEDDY 157
|
Length = 258 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 50/160 (31%), Positives = 65/160 (40%), Gaps = 37/160 (23%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD---------------------------LQYERAFKSF 439
FG++YKA+ G VAVK+ ++ AF+
Sbjct: 11 SFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDK 70
Query: 440 DVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
D LV+EY G L S L + I + + LEYLH S IIH
Sbjct: 71 DHLY-----LVMEYCEGGDL-FDYLSRGGPLSEDEAKKIALQILRGLEYLH---SNGIIH 121
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
DLK N+LL N V ++DFG+AK LLK S T T
Sbjct: 122 RDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGT 161
|
Length = 260 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 409 FGSIYKARIQD-----GMKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG +YK +++ ++VAVK E+ + F +M+KL
Sbjct: 12 FGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCT 71
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
V+EYM G L L + L + L+ + +A +EYL S IH DL
Sbjct: 72 EEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLE---SKNFIHRDL 128
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKED 530
N L+G N+V +SDFG+++ L +D
Sbjct: 129 AARNCLVGENLVVKISDFGLSRDLYDDD 156
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 30/149 (20%)
Query: 409 FGSIYKARIQDG-----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG +YK ++ ++VAVK E+ + F +M+KL
Sbjct: 12 FGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCT 71
Query: 450 -------VLEYMPHGSLEKCL-YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V+EYMP G L L + L + L+ + +A +EYL S IH D
Sbjct: 72 EEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRD 128
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
L N L+G N+V +SDFG+++ L +D
Sbjct: 129 LAARNCLVGENLVVKISDFGLSRDLYDDD 157
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 42/158 (26%)
Query: 409 FGSIYKARIQDG----MKVAVKV----FDLQYERAFKSFDVACDMMKKL----------- 449
FG +YK +++ +VAVK + + F +MKKL
Sbjct: 8 FGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLK---EARVMKKLGHPNVVRLLGV 64
Query: 450 ---------VLEYMPHGSLEKCL--------YSSNYILDIFQRLNIMIDVALALEYLHFG 492
VLEYM G L L L + L+ I +A +EYL
Sbjct: 65 CTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA-- 122
Query: 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
S +H DL N L+G ++V +SDFG+++ + +D
Sbjct: 123 -SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDD 159
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-14
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345
L G IP + KL+ LQ ++ N + G IP + SL LDLS N +GSIP G
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 346 TSLRILSLDSNKLISIIPSTL 366
TSLRIL+L+ N L +P+ L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-14
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
V L+IS +L I S ++ SLQ L L+ N F G +P S F L ++ + N
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD------VQIPN 167
G +P +LG+L+EL L L N L+G I + + L LDLSHN L+ ++P
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209
L L L N SG IP + N L + + N +P+T
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 42 WTGVSC----DVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF 97
W+G C + + L + L IP+++ L LQ+++LS N G+IP S+
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 98 NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT---------IHSSIFNLS 148
+++SL + + N+ G IPE LG L L L L N L+G +H + FN +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523
|
Length = 623 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 41/150 (27%)
Query: 408 GFGSIYKARIQD-GMKVAVKVFDLQY--ERAFKSFDVACDMMKKL--------------- 449
FGS+Y A +D G +AVK +L E ++ + ++ L
Sbjct: 12 SFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDE 71
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNI------MIDVALALEYLHFGYSTP 496
LEY+ GSL +L F +L + L YLH S
Sbjct: 72 EKNTLNIFLEYVSGGSLSS-------LLKKFGKLPEPVIRKYTRQILEGLAYLH---SNG 121
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
I+H D+K +N+L+ ++ V L+DFG AK L
Sbjct: 122 IVHRDIKGANILVDSDGVVKLADFGCAKRL 151
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------ 448
GFG +YKAR + G +VA+KV L+ + + ++KK
Sbjct: 12 GFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDE 71
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+V+E+ GSL+ L S+N L Q + ++ LEYLH S IIH D+K +N
Sbjct: 72 LWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAAN 128
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
+LL ++ L DFG++ L T
Sbjct: 129 ILLTSDGEVKLIDFGLSAQLSDTKARNT 156
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVF---DLQYERAFKSFDVACDMMKK--------------- 448
+G ++ A+ G A+KV D+ + D++ +
Sbjct: 5 AYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG 64
Query: 449 -----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
LV+EY+P G L L + LD + ++ LALEYLH S IIH DLK
Sbjct: 65 KKNLYLVMEYLPGGDLASLLENVGS-LDEDVARIYIAEIVLALEYLH---SNGIIHRDLK 120
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
N+L+ +N L+DFG++K+ L Q + RI GT
Sbjct: 121 PDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGT 164
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265 |
| >gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 37/149 (24%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL------QYERAFKSFDVACDMMKKL----------- 449
FG +Y R DG +K DL + E A + +KKL
Sbjct: 12 SFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKI----LKKLNHPNIIKYYES 67
Query: 450 ---------VLEYMPHGSLEKCLYSSNYILDIF---QRLNIMIDVALALEYLHFGYSTPI 497
V+EY G L + + F Q L+ + + LAL+YLH S I
Sbjct: 68 FEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKI 124
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
+H D+K N+ L +N + L DFG++K+L
Sbjct: 125 LHRDIKPQNIFLTSNGLVKLGDFGISKVL 153
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 66/299 (22%), Positives = 98/299 (32%), Gaps = 116/299 (38%)
Query: 409 FGSIYKARI------QDGMKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG ++ D VAVK + A K F+ +++
Sbjct: 18 FGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVC 77
Query: 450 --------VLEYMPHGSLEKCLYSSN-------------YILDIFQRLNIMIDVALALEY 488
V EYM HG L K L S L + Q L I + +A + Y
Sbjct: 78 TEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVY 137
Query: 489 L---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
L HF +H DL N L+G ++V + DFGM++ + D ++R+
Sbjct: 138 LASQHF------VHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTD----------YYRVG 181
Query: 546 GTRRNPQMNFFSGEMTLKSWVNDLLPISVM--EVVDVNLLSMED----------KYFTTK 593
G +LPI M E + + E + FT
Sbjct: 182 GHT--------------------MLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYG 221
Query: 594 KQ-------------------------CLSFVFNLAMECTAESPKQRINAKESVTRLLK 627
KQ C S V+++ + C P+QRIN K+ RL K
Sbjct: 222 KQPWYGLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 39/111 (35%), Positives = 62/111 (55%)
Query: 50 RSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNN 109
S R+ L++S + +P +LG+LS L L LS N SG IP + + L+S+ ++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 110 NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNL 160
N L G+IP + L L L N L+G I ++ N+ SL +++SHN+L
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
|
Length = 968 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 26/138 (18%)
Query: 409 FGSIYKARIQDGMKVAVKV------------FDLQYERAFKSFD-------VACDMMKK- 448
FG +YK ++ +VAVK F LQ K +D + + K+
Sbjct: 8 FGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKF-LQEAEILKQYDHPNIVKLIGVCVQKQP 66
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+V+E +P GSL L L + + L + +D A +EYL S IH DL N
Sbjct: 67 IYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARN 123
Query: 507 VLLGNNMVAHLSDFGMAK 524
L+G N V +SDFGM++
Sbjct: 124 CLVGENNVLKISDFGMSR 141
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 30/152 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYER-AF-----------KSFD---------VACDMM 446
+G +YKAR + G VA+K ++ E+ F + +
Sbjct: 12 YGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKG 71
Query: 447 KK---LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
K +V EYM H L L S Q M + L+YLH S I+H D+K
Sbjct: 72 KGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIK 127
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKE-DQSFT 534
SN+L+ N+ V L+DFG+A+ K +T
Sbjct: 128 GSNILINNDGVLKLADFGLARPYTKRNSADYT 159
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287 |
| >gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 408 GFGSIYKA-RIQDGMKVAVKVFDLQYERA---------------------FKSFDVACDM 445
G +YKA G +VA+K L+ + + S+ V ++
Sbjct: 31 ASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDEL 90
Query: 446 MKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+V+EYM GSL + + ++ Q + +V LEYLH S +IH D+K
Sbjct: 91 W--VVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSD 145
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKE 529
N+LL + L+DFG A L KE
Sbjct: 146 NILLSKDGSVKLADFGFAAQLTKE 169
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 259 NCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318
N + G I +IS L +L +I L+GN + G+IP +L + L++L N G IP
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 319 CRLASLYELDLSGNKLSGSIPTCFG 343
+L SL L+L+GN LSG +P G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 306 VDNK-LEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPS 364
+DN+ L G IP + +L L ++LSGN + G+IP G+ TSL +L L N IP
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484
Query: 365 TLWNLKDILYLNLSSNFFISPLPLEIG 391
+L L + LNL+ N +P +G
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 36/171 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKKL--------------- 449
F ++ A+ + + A+K+ D + E+ K + +++ +L
Sbjct: 14 FSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQD 73
Query: 450 ------VLEYMPHGSLEK--CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
VLEY P+G L + Y S LD ++ LALEYLH S IIH D
Sbjct: 74 EENLYFVLEYAPNGELLQYIRKYGS---LDEKCTRFYAAEILLALEYLH---SKGIIHRD 127
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLL---LKEDQSFTQNTNTCHHRIYGTRR 549
LK N+LL +M ++DFG AK+L + + TN RR
Sbjct: 128 LKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRR 178
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280 |
| >gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYE---------------RAFKS------FDVACDMM 446
+G +YKAR + G VA+K L E + K DV
Sbjct: 12 YGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTER 71
Query: 447 K-KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
K LV EY L+K L L +IM + L Y H S I+H DLK
Sbjct: 72 KLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQ 127
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
N+L+ + V L+DFG+A+ +++T
Sbjct: 128 NILINRDGVLKLADFGLARAFGIPLRTYTHE 158
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LVLEY P G L L + R ++ LALEYLH S II+ DLK N+L
Sbjct: 70 LVLEYAPGGELFSHLSKEGRFSEERARF-YAAEIVLALEYLH---SLGIIYRDLKPENIL 125
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQS 532
L + L+DFG+AK L E
Sbjct: 126 LDADGHIKLTDFGLAKELSSEGSR 149
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 39/238 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG +++ ++ ++VA+K+ + F +K+L
Sbjct: 19 FGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVY 78
Query: 450 -VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+ E M GSL L S +L + +++ VA + YL IH DL N+
Sbjct: 79 IITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNI 135
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN---------TCHHRIYGTRRNP-QMNFFS 557
L+G ++V ++DFG+A+ L+KED + + H + T+ +
Sbjct: 136 LVGEDLVCKVADFGLAR-LIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILL 194
Query: 558 GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
EM V P M +V +C ++ + +EC A P+ R
Sbjct: 195 YEMFTYGQV----PYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDR 248
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 25/140 (17%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKS---------FDVACDMMKK---------- 448
G +YK R G A+K + + F+ + K
Sbjct: 14 SGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGE 73
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+VLEYM GSL L I + I + L+YLH IIH D+K SN
Sbjct: 74 ISIVLEYMDGGSLADLLKKVGKIPEPVLAY-IARQILKGLDYLH--TKRHIIHRDIKPSN 130
Query: 507 VLLGNNMVAHLSDFGMAKLL 526
+L+ + ++DFG++K+L
Sbjct: 131 LLINSKGEVKIADFGISKVL 150
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 164 QIPN-------LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216
IPN L+++ L GN+ G IP + + + L +L+L NSF IP + G L +L
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 217 KRLNLYDNYLTSSTP 231
+ LNL N L+ P
Sbjct: 493 RILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 39/145 (26%)
Query: 408 GFGSIYKA-RIQDGMKVAVKVFDLQ--YERAFKSFDVACDMMKKL--------------- 449
FG +YK ++ G VA+K L+ E A KS D++K L
Sbjct: 12 AFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS 71
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLN------IMIDVALALEYLHFGYSTPII 498
+LEY +GSL + I+ F + V L YLH +I
Sbjct: 72 DSLYIILEYAENGSLRQ-------IIKKFGPFPESLVAVYVYQVLQGLAYLH---EQGVI 121
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMA 523
H D+K +N+L + V L+DFG+A
Sbjct: 122 HRDIKAANILTTKDGVVKLADFGVA 146
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 11/229 (4%)
Query: 69 PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELET 128
SEL L++L +LDL N + IP I + S L ++ +P L NL L+
Sbjct: 109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167
Query: 129 LWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI----PNLENLLLWGNNFSGAIPH 184
L L N L+ + + NLS+L++LDLS N ++D+ + L NN +
Sbjct: 168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS 226
Query: 185 FIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKY 244
+ N LS LEL N DL P + GNL NL+ L+L +N ++S + L SL+N +
Sbjct: 227 SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS----LGSLTNLRE 281
Query: 245 LEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
L+ S SL + + ++ L L A+ L N + + I
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330
|
Length = 394 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKK------------------ 448
FG ++ + KVA+K E F + A MMK
Sbjct: 17 FGLVWLGYWLEKRKVAIKTIREGAMSEEDFI--EEAQVMMKLSHPKLVQLYGVCTERSPI 74
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
LV E+M HG L L + L + +DV + YL S+ +IH DL N
Sbjct: 75 CLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNC 131
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
L+G N V +SDFGM + +L D +T +T T
Sbjct: 132 LVGENQVVKVSDFGMTRFVL--DDQYTSSTGT 161
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPN 167
+N L G IP ++ L L+++ L N + G I S+ +++SL LDLS+
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY---------- 475
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGN-LINLKRLNLYDN 224
N+F+G+IP + + L IL L NS +P G L++ N DN
Sbjct: 476 --------NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 449 LVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V EYM GSL L S ++ + Q+L +DV +EYL +H DL NV
Sbjct: 77 IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNV 133
Query: 508 LLGNNMVAHLSDFGMAK 524
L+ ++VA +SDFG+AK
Sbjct: 134 LVSEDLVAKVSDFGLAK 150
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V EYM +G L L L L++ DV A+EYL S IH DL N L
Sbjct: 76 IVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCL 132
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+G + V +SDFG+A+ +L D +T + T
Sbjct: 133 VGEDNVVKVSDFGLARYVL--DDQYTSSQGT 161
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 33/141 (23%)
Query: 408 GFGSIYKARIQD-GMKVAVKVFDL----------QYERAFKSFDVACD----------MM 446
FG +YKA + VA+KV DL Q E F S C +
Sbjct: 13 SFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLS---QCRSPYITKYYGSFL 69
Query: 447 K--KL--VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
K KL ++EY GS L LD I+ +V L LEYLH IH D+
Sbjct: 70 KGSKLWIIMEYCGGGSCLDLLKP--GKLDETYIAFILREVLLGLEYLH---EEGKIHRDI 124
Query: 503 KLSNVLLGNNMVAHLSDFGMA 523
K +N+LL L+DFG++
Sbjct: 125 KAANILLSEEGDVKLADFGVS 145
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
| >gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 44/161 (27%)
Query: 409 FGSIYKARI--QDG--MKVAVKVF--DLQYERAFKSF--DVACDMMKKL----------- 449
FGS+ + ++ DG +KVAVK D+ + F + AC MK
Sbjct: 12 FGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAAC--MKDFDHPNVMKLIGV 69
Query: 450 ---------------VLEYMPHGSLEKCLYSSN-----YILDIFQRLNIMIDVALALEYL 489
+L +M HG L L S L + L M+D+AL +EYL
Sbjct: 70 CFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYL 129
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ IH DL N +L +M ++DFG++K + D
Sbjct: 130 S---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGD 167
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273 |
| >gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 33/158 (20%)
Query: 409 FGSIYKA-RIQDGMKVAVKVFD---------------------LQYERAFKSFDVACDMM 446
FG++ K R DG + K D L++ + +D D
Sbjct: 13 FGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRS 72
Query: 447 KK---LVLEYMPHGSL----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGY--STPI 497
+ +V+EY G L +KC YI + F I+ + LAL H +
Sbjct: 73 NQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFI-WRILTQLLLALYECHNRSDPGNTV 131
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
+H DLK +N+ L N L DFG+AK +L D SF +
Sbjct: 132 LHRDLKPANIFLDANNNVKLGDFGLAK-ILGHDSSFAK 168
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265 |
| >gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 50/238 (21%)
Query: 418 QDGMKVAVKVFDLQYERAFKSFDVACDMMKK-LVLEYMPHGSLEKCLYS----------- 465
+D + A + +LQ+E K + V D +V EYM HG L K L +
Sbjct: 52 KDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDG 111
Query: 466 ----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521
+ L + Q L+I +A + YL S +H DL N L+G N++ + DFG
Sbjct: 112 QPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFG 168
Query: 522 MAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKS----------------- 564
M++ D T H + R P + + T +S
Sbjct: 169 MSR-----DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK 223
Query: 565 --WVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKE 620
W L V+E + + + + C V+++ + C P+QR+N KE
Sbjct: 224 QPWFQ-LSNTEVIECI------TQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKE 274
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291 |
| >gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 34/141 (24%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----VLEYMPHGS---- 458
+GS+YKA + G VA+KV + E + ++K+ +++Y +GS
Sbjct: 15 SYGSVYKAIHKETGQVVAIKVVPV--EEDLQEIIKEISILKQCDSPYIVKY--YGSYFKN 70
Query: 459 ------LEKCLYSSNYILDIFQRLN----------IMIDVALALEYLHFGYSTPIIHCDL 502
+E C S + DI + N I+ LEYLH S IH D+
Sbjct: 71 TDLWIVMEYCGAGS--VSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDI 125
Query: 503 KLSNVLLGNNMVAHLSDFGMA 523
K N+LL A L+DFG++
Sbjct: 126 KAGNILLNEEGQAKLADFGVS 146
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 31/156 (19%)
Query: 409 FGSIYKARI-----QDGMKVAVKVFDLQYERAFKS-FDVACDMMK--------------- 447
FG + R G +VAVK + E +S F+ ++++
Sbjct: 17 FGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCE 76
Query: 448 -------KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
+L++EY+P GSL L +++ + L + ++YL S IH
Sbjct: 77 KPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLG---SQRYIHR 133
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
DL N+L+ + + +SDFG+AK+L ++ +
Sbjct: 134 DLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVK 169
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 409 FGSIYKA-RIQDGMKVAVKVFDL----QYERA-------------------FK-SFDVAC 443
+GS+YK R+ D A+K DL Q ER +K +F
Sbjct: 13 YGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGN 72
Query: 444 DMMKKLVLEYMPHGSLEKCLYSSNYILDIFQR---LNIMIDVALALEYLHFGYSTPIIHC 500
+ +V+EY P G L K + + I I + L+ LH I+H
Sbjct: 73 KLC--IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHR 127
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLK 528
DLK +N+LL N + + D G++K+L K
Sbjct: 128 DLKSANILLVANDLVKIGDLGISKVLKK 155
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256 |
| >gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 5e-07
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-FGYSTPIIHCDLKLSNV 507
+V EYM +GSL+ L + + Q + ++ +A ++YL GY +H DL N+
Sbjct: 82 IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGY----VHRDLAARNI 137
Query: 508 LLGNNMVAHLSDFGMAKLL 526
L+ +N+V +SDFG++++L
Sbjct: 138 LVNSNLVCKVSDFGLSRVL 156
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267 |
| >gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 47/161 (29%)
Query: 409 FGSIYKARIQD-GMKVAVKVFDLQYER------AFKSFDV-------------------- 441
+G +YKAR +D G VA+K L E+ A + +
Sbjct: 20 YGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQ 79
Query: 442 -ACDMMKK-----LVLEYMPH---GSLEKCL--YSSNYILDIFQRLNIMIDVALALEYLH 490
A D K LV EYM H G LE L +S ++I ++L LE L+
Sbjct: 80 DALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL---------LEGLN 130
Query: 491 FGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
+ + +H D+K SN+LL N L+DFG+A+L E+
Sbjct: 131 YCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES 171
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302 |
| >gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 24/144 (16%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG +YKA+ + G+ A K+ ++ E + F V D++ +
Sbjct: 18 FGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKL 77
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+++E+ G+L+ + L Q + + AL +LH S +IH DLK N+
Sbjct: 78 WILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNI 134
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQ 531
LL + L+DFG++ Q
Sbjct: 135 LLTLDGDVKLADFGVSAKNKSTLQ 158
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 430 LQYERAFKSFDVACDMMKKLVLEYMPHGSLEKCLY-SSNYILDIFQRLNIMIDVALALEY 488
L++E+ + + V + +V EYM GSL L L + Q +++ +A + Y
Sbjct: 58 LRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAY 117
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
+ +H DL+ +N+L+G N+V ++DFG+A+L+ ED +T
Sbjct: 118 VE---RMNYVHRDLRAANILVGENLVCKVADFGLARLI--EDNEYT 158
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510
LE +P GSL K L + L LEYLH +H D+K +N+L+
Sbjct: 81 LELVPGGSLAK-LLKKYGSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVD 136
Query: 511 NNMVAHLSDFGMAKLLLKED 530
N V L+DFGMAK +++
Sbjct: 137 TNGVVKLADFGMAKQVVEFS 156
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258 |
| >gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 38/169 (22%)
Query: 409 FGSIYKA-RIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKLVLEYMPHGSLEKCL---- 463
FG +Y A + G +AVK +Q K+ D MK VLE + H +L K
Sbjct: 13 FGKVYTAVNLDTGELMAVKEIRIQDNDP-KTIKEIADEMK--VLELLKHPNLVKYYGVEV 69
Query: 464 ----------YSSNYILDIFQRLNIMIDVAL----------ALEYLHFGYSTPIIHCDLK 503
Y S L+ ++D + L YLH S I+H D+K
Sbjct: 70 HREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIK 126
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQ 552
+N+ L +N V L DFG A L NT T + P
Sbjct: 127 PANIFLDHNGVIKLGDFGCAVKLKN-------NTTTMGEEVQSLAGTPA 168
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264 |
| >gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
L+L+Y+ G L LY + + R+ I ++ LAL++LH II+ D+KL N+L
Sbjct: 82 LILDYVNGGELFTHLYQREHFTESEVRVYIA-EIVLALDHLH---QLGIIYRDIKLENIL 137
Query: 509 LGNNMVAHLSDFGMAKLLLKED 530
L + L+DFG++K L E+
Sbjct: 138 LDSEGHVVLTDFGLSKEFLAEE 159
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-06
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
+L LDLS N+L+ F +L++L L N L SI P L + L+LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
|
Length = 60 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVFD------------------LQYERAFKSFDVACDMMKKLV 450
FG ++ KVAVK L++++ + + V + +V
Sbjct: 19 FGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIV 78
Query: 451 LEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL 509
EYM GSL L L + +++ VA + Y+ IH DL+ +N+L+
Sbjct: 79 TEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILV 135
Query: 510 GNNMVAHLSDFGMAKLLLKEDQSFT 534
G+ +V ++DFG+A+L+ ED +T
Sbjct: 136 GDGLVCKIADFGLARLI--EDNEYT 158
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 449 LVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V EYM GSL L S +L L +DV A+EYL + +H DL NV
Sbjct: 77 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNV 133
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
L+ + VA +SDFG+ K + S TQ+T
Sbjct: 134 LVSEDNVAKVSDFGLTK-----EASSTQDT 158
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.1 bits (118), Expect = 2e-06
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 449 LVLEYMPHGSLEK--CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV+EY+ GSLE L + L I+ + ALEYLH S IIH D+K N
Sbjct: 75 LVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPEN 131
Query: 507 VLLG-NNMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
+LL + V L DFG+AKLL + +
Sbjct: 132 ILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPS 166
|
Length = 384 |
| >gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 47/159 (29%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------KL 449
+G +YKAR I G VA+KV L+ F+ M+K KL
Sbjct: 16 YGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKL 75
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLN----------IMIDVALALEYLHFGYSTPI 497
V+EY GSL+ DI+Q + + L YLH T
Sbjct: 76 WIVMEYCGGGSLQ----------DIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGK 122
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLL---LKEDQSF 533
IH D+K +N+LL + L+DFG++ L + + +SF
Sbjct: 123 IHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSF 161
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262 |
| >gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV+EY+ G ++ L+ Y D + + +VALAL+YLH IIH DLK N+L
Sbjct: 81 LVMEYLIGGDVKSLLHIYGY-FDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNML 136
Query: 509 LGNNMVAHLSDFGMAKLLLKED 530
+ N L+DFG++K+ L +
Sbjct: 137 ISNEGHIKLTDFGLSKVTLNRE 158
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG ++ KVAVK + ++F +MKKL
Sbjct: 19 FGEVWMGTWNGTTKVAVKTLK-PGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIY 77
Query: 450 -VLEYMPHGSLEKCLYSSNYILDIFQRLNIMID----VALALEYLHFGYSTPIIHCDLKL 504
V EYM GSL L S RL ++D +A + YL S IH DL
Sbjct: 78 IVTEYMSKGSLLDFLKSGE---GKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAA 131
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
N+L+G N+V ++DFG+A+L+ ED +T
Sbjct: 132 RNILVGENLVCKIADFGLARLI--EDDEYT 159
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 418 QDGMKVAVKVFDLQYERAFKSFDVAC----DMMKKLVLEYMPHGSLEKCLYSSNYILDIF 473
G K + + Y + C +L++EY+P GSL L L++
Sbjct: 50 TSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHK--LNLA 107
Query: 474 QRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
Q L + + YLH S IH DL NVLL N+ + + DFG+AK
Sbjct: 108 QLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 155
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-06
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFD-----------LQYERAFKSFDV--------ACDMMKK- 448
FG ++K ++D VAVK L R K +D C +
Sbjct: 8 FGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPI 67
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V+E +P G L L Q + +D A + YL S IH DL N
Sbjct: 68 YIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNC 124
Query: 508 LLGNNMVAHLSDFGMAK 524
L+G N V +SDFGM++
Sbjct: 125 LVGENNVLKISDFGMSR 141
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV E+M LEK + + +L + M+ LEYLH + I+H DLK +N+L
Sbjct: 79 LVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLL 134
Query: 509 LGNNMVAHLSDFGMAK 524
+ ++ V L+DFG+A+
Sbjct: 135 IASDGVLKLADFGLAR 150
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 250 QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
+ L+ ++ +I G I + ++T+L + L+ N NGSIP +L +L L++L+ N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 310 LEGPIP 315
L G +P
Sbjct: 502 LSGRVP 507
|
Length = 623 |
| >gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 399 IDLSMNNFSGFGS-IYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------- 448
++L NF +YK R + + VA+KV + E++ + +MM++
Sbjct: 1 VELGSGNFGCVKKGVYKMRKKQ-IDVAIKVLKNENEKSVRD-----EMMREAEIMHQLDN 54
Query: 449 ----------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFG 492
LV+E G L K L + + + +M V++ ++YL
Sbjct: 55 PYIVRMIGVCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLE-- 112
Query: 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
+H DL NVLL N A +SDFG++K L +D + +
Sbjct: 113 -GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARS 156
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257 |
| >gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 444 DMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
M ++ EYM +G+L+K L + +Q + ++ +A ++YL +H DL
Sbjct: 80 PAM--IITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLA 134
Query: 504 LSNVLLGNNMVAHLSDFGMAKLL 526
N+L+ +N+ +SDFG++++L
Sbjct: 135 ARNILVNSNLECKVSDFGLSRVL 157
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 449 LVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V+E M G+L L + ++ + Q L +DVA +EYL S ++H DL N+
Sbjct: 75 IVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNI 131
Query: 508 LLGNNMVAHLSDFGMAK 524
L+ + VA +SDFG+A+
Sbjct: 132 LVSEDGVAKVSDFGLAR 148
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 85/320 (26%), Positives = 131/320 (40%), Gaps = 45/320 (14%)
Query: 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYF--NNNTLFGEIPEELGNL 123
+PS L L SL L S S N+ +LL + N EL L
Sbjct: 60 LLLPSSLSRLLSLDLLSPSGI----SSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL 115
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP 183
L +L L NN +T S+L +LDLS N + + P
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP----------------- 158
Query: 184 HFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCK 243
+ N L L+L N D +P NL NL L+L N ++ PE+ L +L
Sbjct: 159 --LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE-- 213
Query: 244 YLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLL 303
L+ S+ S+ +L +SNL NL+ + L+ NKL +P ++ L L+ L
Sbjct: 214 -LDLSNNSIIE-----------LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260
Query: 304 SFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS--LDSNKLISI 361
+N++ L +L ELDLSGN LS ++P L +L L + K + +
Sbjct: 261 DLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318
Query: 362 IPSTLWNLKDILYLNLSSNF 381
+++ +IL +S+
Sbjct: 319 KLNSILLNNNILSNGETSSP 338
|
Length = 394 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 44/165 (26%), Positives = 63/165 (38%), Gaps = 49/165 (29%)
Query: 409 FGSIYKARI------QDGMKVAVKVFD-------------------LQYERAFKSFDVAC 443
FG ++ A QD M VAVK LQ++ + + V
Sbjct: 18 FGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCT 77
Query: 444 D-MMKKLVLEYMPHGSLEKCLYSSN---YILD-----------IFQRLNIMIDVALALEY 488
+ +V EYM HG L + L S IL + Q L I +A + Y
Sbjct: 78 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVY 137
Query: 489 L---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
L HF +H DL N L+G +V + DFGM++ + D
Sbjct: 138 LASLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 176
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 449 LVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V+EY P G+L + + N +LD L+ + + LAL ++H + I+H DLK N+
Sbjct: 76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNI 132
Query: 508 LLG-NNMVAHLSDFGMAKLLLKEDQSFT 534
LL + MV + DFG++K+L + +++T
Sbjct: 133 LLDKHKMVVKIGDFGISKILSSKSKAYT 160
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256 |
| >gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 417 IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKLVLEYMPHGSLEKCLYSSNY-ILDIFQR 475
+ D +K A + L +E + + V +V E P GSL L I
Sbjct: 40 MDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTL 99
Query: 476 LNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
+ + +A + YL S IH DL N+LL ++ + DFG+ + L + + +
Sbjct: 100 CDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVM 156
Query: 536 NTN 538
+
Sbjct: 157 EEH 159
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-06
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNF 178
L++L L NN LT + L +L LDLS NNLT + +P+L +L L GNN
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 445 MMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL-HFGYSTPIIHCDLK 503
+M ++ EYM +GSL+K L ++ + Q + ++ +A ++YL Y +H DL
Sbjct: 80 VM--IITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNY----VHRDLA 133
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN 538
N+L+ +N+V +SDFG+++ L ED T T
Sbjct: 134 ARNILVNSNLVCKVSDFGLSRRL--EDSEATYTTK 166
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 478 IMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
+ ++ LALEYLH S IIH D+K N+LL H++DF +A + + + +
Sbjct: 105 WICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTS 158
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258 |
| >gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
L+L+Y+ G + LY + + R ++ LALE+LH I++ D+KL N+L
Sbjct: 82 LILDYVSGGEMFTHLYQRDNFSEDEVRFYSG-EIILALEHLH---KLGIVYRDIKLENIL 137
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFT 534
L + L+DFG++K L E++ T
Sbjct: 138 LDSEGHVVLTDFGLSKEFLSEEKERT 163
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332 |
| >gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 449 LVLEYMPHGSLEKCLYSSN-----YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
++L +M HG L L S + L + + MID+A +EYL S IH DL
Sbjct: 84 VILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLA 140
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKED 530
N +L NM ++DFG++K + D
Sbjct: 141 ARNCMLNENMTVCVADFGLSKKIYSGD 167
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)
Query: 143 SIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF 202
+ + S +S LD S N L + +P+L+ L + + + L+ L+L N+
Sbjct: 73 DLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS----ELLELTNLTSLDLDNNNI 128
Query: 203 FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262
D+ P NLK L+L DN + S L L +L+ + ++
Sbjct: 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL-------------PNLKNLDLSFNDL 175
Query: 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322
S + + +SNL+NL + L+GNK++ +P + L L+ L +N + + L
Sbjct: 176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
+L L+LS NKL +P GN ++L L L +N++ SI S+L +L ++ L+LS N
Sbjct: 233 NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSL 289
Query: 383 ISPLPLEI 390
+ LPL
Sbjct: 290 SNALPLIA 297
|
Length = 394 |
| >gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
KL++E++P GSL++ L + +++ Q+L + + ++YL S +H DL NV
Sbjct: 84 KLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNV 140
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFT 534
L+ + + DFG+ K + + + +T
Sbjct: 141 LVESEHQVKIGDFGLTKAIETDKEYYT 167
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 17 LKGHVTDDPTNFLAKNWNTSSTV-CHWTGVSCD 48
K + DP+ L+ +WN SS+ C WTGV+CD
Sbjct: 11 FKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 449 LVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
++ E+M +G+L L N ++ L + ++ A+EYL IH DL N
Sbjct: 79 IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNC 135
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH 541
L+G N + ++DFG+++L+ T +T T H
Sbjct: 136 LVGENHLVKVADFGLSRLM-------TGDTYTAH 162
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 40/148 (27%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+G++Y+ + + G VA+K+ +L DV+ D+ ++
Sbjct: 14 YGAVYRGKHVPTGRVVALKIINLDTP----DDDVS-DIQREVALLSQLRQSQPPNITKYY 68
Query: 449 ----------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
+++EY GS+ + L + I + + + I+ +V +AL+Y+H +I
Sbjct: 69 GSYLKGPRLWIIMEYAEGGSV-RTLMKAGPIAEKYISV-IIREVLVALKYIH---KVGVI 123
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
H D+K +N+L+ N L DFG+A LL
Sbjct: 124 HRDIKAANILVTNTGNVKLCDFGVAALL 151
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVFD------------------LQYERAFKSFDVACDMMKKLV 450
FG ++ KVA+K L++++ + V + +V
Sbjct: 19 FGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIV 78
Query: 451 LEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL 509
E+M GSL L + L + Q +++ +A + Y+ IH DL+ +N+L+
Sbjct: 79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILV 135
Query: 510 GNNMVAHLSDFGMAKLLLKEDQSFT 534
G+N+V ++DFG+A+L+ ED +T
Sbjct: 136 GDNLVCKIADFGLARLI--EDNEYT 158
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV+EY L L + Q +M+ + L+YLH + IIH DLK+SN+L
Sbjct: 85 LVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLL 140
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
L + ++DFG+A+ + T T +R
Sbjct: 141 LTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYR 175
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309 |
| >gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+LV + P GSL + LD + LN + +A + YL ++H +L N+
Sbjct: 84 QLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNI 140
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
LL ++ + ++DFG+A LL +D+ + +
Sbjct: 141 LLKSDSIVQIADFGVADLLYPDDKKYFYS 169
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279 |
| >gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 409 FGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG +YKA+ ++ G A KV + + E + + V +++
Sbjct: 25 FGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKL 84
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+++E+ P G+++ + + L I + LE L + +S IIH DLK NV
Sbjct: 85 WIMIEFCPGGAVDAIMLELDRGL---TEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNV 141
Query: 508 LLGNNMVAHLSDFGMA----KLLLKED 530
LL + L+DFG++ K L + D
Sbjct: 142 LLTLDGDIKLADFGVSAKNVKTLQRRD 168
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292 |
| >gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 51/169 (30%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+G +YKAR + G VA+K+ D+ + + ++++K
Sbjct: 19 YGKVYKARHKKTGQLVAIKIMDIIEDEE-EEIKEEYNILRKYSNHPNIATFYGAFIKKNP 77
Query: 449 --------LVLEYMPHGS---LEKCLYSSNYILDIFQRLN------IMIDVALALEYLHF 491
LV+E GS L K L +RL I+ + L YLH
Sbjct: 78 PGNDDQLWLVMELCGGGSVTDLVKGLRKKG------KRLKEEWIAYILRETLRGLAYLH- 130
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
+IH D+K N+LL N L DFG++ L S NT
Sbjct: 131 --ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL----DSTLGRRNTF 173
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275 |
| >gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 449 LVLEYMPHGSLEKCLYSSNYI---------------LDIFQRLNIMIDVALALEYLHFGY 493
L +EY PHG+L L S + L Q L+ DVA ++YL
Sbjct: 85 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS--- 141
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
IH DL N+L+G N VA ++DFG+++
Sbjct: 142 QKQFIHRDLAARNILVGENYVAKIADFGLSR 172
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303 |
| >gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV+EYMP L + L L Q + M + + Y+H + I+H DLK +N+L
Sbjct: 76 LVMEYMPS-DLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLL 131
Query: 509 LGNNMVAHLSDFGMAKLLLKED 530
+ + V ++DFG+A+L +E+
Sbjct: 132 ISADGVLKIADFGLARLFSEEE 153
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVF------------------DLQYERAFKSFDVACDMMKKLV 450
FG ++ KVA+K LQ+ R + + V ++
Sbjct: 19 FGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYII 78
Query: 451 LEYMPHGSLEKCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL 509
EYM +GSL L + I L I + +++ +A + ++ IH DL+ +N+L+
Sbjct: 79 TEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILV 135
Query: 510 GNNMVAHLSDFGMAKLLLKEDQSFT 534
+ ++DFG+A+L+ ED +T
Sbjct: 136 SETLCCKIADFGLARLI--EDNEYT 158
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
| >gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 36/147 (24%)
Query: 412 IYKARIQDGMKVAVKVFDLQ-YERAFK---SFDVAC--------------DMMKK----- 448
+ R+ DG AVKV D++ A K +V C D KK
Sbjct: 49 LCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP 108
Query: 449 -------LVLEYMPHGSLEKCLYSSNYILDIFQRLN---IMIDVALALEYLHFGYSTPII 498
LVL+Y G L + + S F+ + I V LA+ ++H S +I
Sbjct: 109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMI 165
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKL 525
H D+K +N+LL +N + L DFG +K+
Sbjct: 166 HRDIKSANILLCSNGLVKLGDFGFSKM 192
|
Length = 496 |
| >gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV E+M L K + L + + + L + H S I+H DLK N+L
Sbjct: 75 LVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLL 130
Query: 509 LGNNMVAHLSDFGMAKLL 526
+ V L+DFG+A+
Sbjct: 131 INTEGVLKLADFGLARSF 148
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283 |
| >gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK--EDQSF--TQNTNTCH 541
L+Y+H S +IH DLK SN+L+ + + DFGMA+ L + + T+ T
Sbjct: 120 LKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVAT-- 174
Query: 542 HRIYGTRRNPQMNFFSGEMTLK 563
R Y R P++ E T
Sbjct: 175 -RWY---RAPELLLSLPEYTTA 192
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334 |
| >gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V EYM +G L L Q L + DV + YL S IH DL N L
Sbjct: 76 IVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCL 132
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+ + +SDFG+++ +L D +T + +
Sbjct: 133 VDDQGCVKVSDFGLSRYVL--DDEYTSSVGS 161
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V E M +GSL + L L + Q +++ VA + YL + IH DL NV
Sbjct: 78 IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNV 134
Query: 508 LLGNNMVAHLSDFGMAKLLLKED 530
L+G N + ++DFG+A+ ++KED
Sbjct: 135 LVGENNICKVADFGLAR-VIKED 156
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 41/148 (27%)
Query: 409 FGSIYKARIQD-GMKVAVKVFDLQYE---------------RAFKSFDV-----ACDMMK 447
+G + K R + G VA+K F + R + ++ A
Sbjct: 14 YGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG 73
Query: 448 K--LVLEYMPHGSLEKCLYSSNYILD-------IFQRLNIMIDVALALEYLHFGYSTPII 498
+ LV EY+ LE L +S L I+Q L A+ Y H S II
Sbjct: 74 RLYLVFEYVERTLLEL-LEASPGGLPPDAVRSYIWQLLQ-------AIAYCH---SHNII 122
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
H D+K N+L+ + V L DFG A+ L
Sbjct: 123 HRDIKPENILVSESGVLKLCDFGFARAL 150
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 351 LSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
L LD+ L IP+ + L+ + +NLS N +P +G++ L +DLS N+F+G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
|
Length = 623 |
| >gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 22/90 (24%)
Query: 445 MMKKLVLEYMPHGSLEKCLYSSNYILD--IFQRLNI---MIDVALALEYL---HFGYSTP 496
+M LV+E P G L K Y+ ++ VA+ + YL HF
Sbjct: 70 LM--LVMELAPLGPLLK------YLKKRREIPVSDLKELAHQVAMGMAYLESKHF----- 116
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
+H DL NVLL N A +SDFGM++ L
Sbjct: 117 -VHRDLAARNVLLVNRHQAKISDFGMSRAL 145
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257 |
| >gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 41/161 (25%)
Query: 408 GFGSIYKARI------QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------ 449
FG ++ A QD + VAVK + A K F +++ L
Sbjct: 17 AFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVC 76
Query: 450 --------VLEYMPHGSLEKCLYSSN------------YILDIFQRLNIMIDVALALEYL 489
V EYM HG L K L + L Q L+I +A + YL
Sbjct: 77 VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYL 136
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
S +H DL N L+G N++ + DFGM++ + D
Sbjct: 137 A---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTD 174
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288 |
| >gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 425 VKVFDLQYERAFKSFDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVAL 484
+ + D+ + + F+ D+ +V E M L K + S + D + + +
Sbjct: 62 IGLLDILRPPSPEDFN---DVY--IVTELMET-DLHKVIKSPQPLTDDHIQY-FLYQILR 114
Query: 485 ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
L+YLH S +IH DLK SN+L+ +N + DFG+A+
Sbjct: 115 GLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLAR 151
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330 |
| >gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
NI + + LAL YLH I+H DL +N++LG + ++DFG+AK
Sbjct: 117 NIFVQMVLALRYLH--KEKRIVHRDLTPNNIMLGEDDKVTITDFGLAK 162
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269 |
| >gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 449 LVLEYMPHGSLEKCLYSSNYI---------------LDIFQRLNIMIDVALALEYLHFGY 493
+ +EY P+G+L L S + L Q L DVA ++YL
Sbjct: 80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS--- 136
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
IH DL NVL+G N+ + ++DFG+++
Sbjct: 137 EKQFIHRDLAARNVLVGENLASKIADFGLSR 167
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297 |
| >gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V+EY+ H L+ + + + +M+ + + +LH + I+H DLK SN+L
Sbjct: 83 MVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLL 138
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
L N + + DFG+A+ + +TQ T +R
Sbjct: 139 LNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYR 173
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293 |
| >gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 409 FGSIYKARIQDGMK----VAVKVFDLQY-ERAFKSFDVACDMMKK--------------- 448
FG + + R++ K VA+K Y E+ + F +M +
Sbjct: 17 FGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK 76
Query: 449 -----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
++ E+M +G+L+ L ++ + Q + ++ +A ++YL +H DL
Sbjct: 77 SRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLA 133
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
N+L+ +N+V +SDFG+++ L++D S
Sbjct: 134 ARNILVNSNLVCKVSDFGLSR-FLEDDTS 161
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269 |
| >gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDI----FQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
LV+EY CL S++ IL++ Q + I AL+ L + +S IH D+K
Sbjct: 92 LVMEY--------CLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKA 143
Query: 505 SNVLLGNNMVAHLSDFGMAKL 525
N+LL L+DFG A L
Sbjct: 144 GNILLTEPGTVKLADFGSASL 164
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307 |
| >gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+LV+EY+P+GSL L LD + L + +EYL S +H DL N+
Sbjct: 83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNI 139
Query: 508 LLGNNMVAHLSDFGMAKLL 526
L+ + + DFG+ K+L
Sbjct: 140 LVESENRVKIGDFGLTKVL 158
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284 |
| >gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 435 AFKSFDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYS 494
+F+S D LV+EY+ G + + + + + + + +V L +E LH
Sbjct: 65 SFQSKDYLY-----LVMEYLNGGDCASLIKTLGGLPEDWAK-QYIAEVVLGVEDLH---Q 115
Query: 495 TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527
IIH D+K N+L+ L+DFG+++ L
Sbjct: 116 RGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGL 148
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260 |
| >gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 41/167 (24%)
Query: 410 GSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------- 448
+Y A + + KVA+K DL E+ S D ++ K+
Sbjct: 15 AVVYAAICLPNNEKVAIKRIDL--EKCQTSVD---ELRKEVQAMSQCNHPNVVKYYTSFV 69
Query: 449 ------LVLEYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
LV+ Y+ GSL + SS LD ++ +V LEYLH S IH
Sbjct: 70 VGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHR 126
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
D+K N+LLG + ++DFG++ L T GT
Sbjct: 127 DIKAGNILLGEDGSVKIADFGVSASLADG----GDRTRKVRKTFVGT 169
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267 |
| >gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+ +EYM GSL+K L + I + V L YLH + IIH D+K SN+L
Sbjct: 76 ICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHK--IIHRDVKPSNIL 133
Query: 509 LGNNMVAHLSDFGMAKLL 526
+ + L DFG++ L
Sbjct: 134 VNSRGQIKLCDFGVSGQL 151
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265 |
| >gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 449 LVLEYMP---HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
LV EYM H + N + D+ +R IM + AL+Y+H S +IH DLK S
Sbjct: 86 LVFEYMETDLHAVIRA-----NILEDVHKRY-IMYQLLKALKYIH---SGNVIHRDLKPS 136
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
N+LL ++ L+DFG+A+ L + +++ T
Sbjct: 137 NILLNSDCRVKLADFGLARSLSELEENPENPVLT 170
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337 |
| >gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 410 GSIYKA-RIQDGMKVAVKVFDLQYE-------------RAFKSFDVA--------CDMMK 447
G++Y A + G +VA+K +LQ + R K ++ D +
Sbjct: 33 GTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELW 92
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V+EY+ GSL + + +D Q + + ALE+LH S +IH D+K N+
Sbjct: 93 -VVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNI 146
Query: 508 LLGNNMVAHLSDFG 521
LLG + L+DFG
Sbjct: 147 LLGMDGSVKLTDFG 160
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293 |
| >gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 29/135 (21%)
Query: 417 IQDGMKVAVKVFDL-----------------QYE-----RAFKSFDVACDMMKKLVLEYM 454
G +VAVK DL Y+ + S+ V ++ +V+E++
Sbjct: 41 KSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELW--VVMEFL 98
Query: 455 PHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV 514
G+L + + ++ Q + + V AL +LH + +IH D+K ++LL ++
Sbjct: 99 EGGALTDIVTHTR--MNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGR 153
Query: 515 AHLSDFGMAKLLLKE 529
LSDFG + KE
Sbjct: 154 VKLSDFGFCAQVSKE 168
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285 |
| >gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 17/86 (19%)
Query: 449 LVLEYMPHGSLEK-------CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
+V+EY G L K L+S + IL F + ++L L+++H I+H D
Sbjct: 76 IVMEYCDGGDLMKRINRQRGVLFSEDQILSWF------VQISLGLKHIH---DRKILHRD 126
Query: 502 LKLSNVLLGNN-MVAHLSDFGMAKLL 526
+K N+ L N MVA L DFG+A+ L
Sbjct: 127 IKSQNIFLSKNGMVAKLGDFGIARQL 152
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 41/207 (19%)
Query: 449 LVLEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGY 493
++ EY+ HG L + L ++ LD L+I I +A +EYL
Sbjct: 85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS--- 141
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQM 553
S +H DL N L+G + +SDFG+++ + D Q + R P
Sbjct: 142 SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQ-----SKSLLPVRWMPPE 196
Query: 554 NFFSGEMTLKSWVNDLLPISVM--EVVDVNL-----LSMEDKYFTTKKQ--------CLS 598
G+ T +S D+ V+ E+ L S ++ + + C +
Sbjct: 197 AILYGKFTTES---DIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLLPCPEDCPA 253
Query: 599 FVFNLAMECTAESPKQRINAKESVTRL 625
V+ L +EC E P +R K+ TRL
Sbjct: 254 RVYALMIECWNEIPARRPRFKDIHTRL 280
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
V LALEYLH S I++ DLK N+LL ++ ++DFG AK +
Sbjct: 110 VVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRV 151
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290 |
| >gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 481 DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
++ L L++LH II+ DLKL NVLL + ++DFGM K
Sbjct: 104 EIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCK 144
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318 |
| >gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 449 LVLEYMPHGSLEKCLYSSNY-----ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
++L +M HG L L S L + M D+A +EYL S IH DL
Sbjct: 83 VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLA 139
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKED 530
N +L NM ++DFG++K + D
Sbjct: 140 ARNCMLNENMNVCVADFGLSKKIYNGD 166
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272 |
| >gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 450 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMI---DVALALEYLHFGYSTPIIHCDLKLSN 506
V+EY G L +++ D+F + V L L+YLH I++ DLKL N
Sbjct: 80 VMEYAAGGDLMMHIHT-----DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDN 131
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+LL ++DFG L KE F T+T
Sbjct: 132 LLLDTEGFVKIADFG----LCKEGMGFGDRTST 160
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324 |
| >gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+++EY+ GS L + + D FQ ++ ++ L+YLH S IH D+K +NVL
Sbjct: 79 IIMEYLGGGSALDLLRAGPF--DEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVL 133
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
L L+DFG+A L D +NT
Sbjct: 134 LSEQGDVKLADFGVAGQL--TDTQIKRNT 160
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V E+M +G L L L L++ DV +EYL IH DL N L
Sbjct: 76 IVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCL 132
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQ 531
+ + V +SDFGM + +L +D+
Sbjct: 133 VSSTGVVKVSDFGMTRYVL-DDE 154
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 39/148 (26%)
Query: 409 FGSIYKA-RIQDGMKVAVKVFDLQ----YERA-----------------FKSFDVACDMM 446
FG ++K R D A+K DL ER + ++ D
Sbjct: 13 FGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKG 72
Query: 447 K-KLVLEYMPHGSLEKCLYS-------SNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
K +V+EY +G L K L + + F I + L L +LH S I+
Sbjct: 73 KLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFF------IQILLGLAHLH---SKKIL 123
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
H D+K N+ L + D G+AKLL
Sbjct: 124 HRDIKSLNLFLDAYDNVKIGDLGVAKLL 151
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256 |
| >gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510
LEY+P GS+ L + + R N + + L YLH + IIH D+K +N+L+
Sbjct: 85 LEYVPGGSVAALLNNYGAFEETLVR-NFVRQILKGLNYLH---NRGIIHRDIKGANILVD 140
Query: 511 NNMVAHLSDFGMAKLLLKEDQSFTQNTN 538
N +SDFG++K L S N
Sbjct: 141 NKGGIKISDFGISKKLEANSLSTKTNGA 168
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267 |
| >gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 449 LVLEYMPHGS----LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
LV+E+ P G L C + D + ++AL L +LH IH DL L
Sbjct: 72 LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLAL 128
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
N LL ++ + D+G++ KED T
Sbjct: 129 RNCLLTADLTVKIGDYGLSHNKYKEDYYVT 158
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
L+ + MP G L + + + LN + +A + YL ++H DL NVL
Sbjct: 85 LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVL 141
Query: 509 LGNNMVAHLSDFGMAKLL-LKEDQ 531
+ ++DFG+AKLL + E +
Sbjct: 142 VKTPQHVKITDFGLAKLLDVDEKE 165
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-FGYSTPIIHCDLKLSNV 507
LV+EYMP G L L + + R I ++ LAL+ +H G+ IH D+K N+
Sbjct: 78 LVMEYMPGGDLMNLLIRKDVFPEETARFYIA-ELVLALDSVHKLGF----IHRDIKPDNI 132
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSF 533
L+ + L+DFG+ K + K
Sbjct: 133 LIDADGHIKLADFGLCKKMNKAKDRE 158
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350 |
| >gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V+EY+ GSL + + +D Q + + ALE+LH S +IH D+K N+L
Sbjct: 94 VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNIL 148
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
LG + L+DFG + E + T
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSKRSTMVGT 179
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296 |
| >gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 57/173 (32%)
Query: 409 FGSIYKARI------QDGMKVAVKVF----------DLQYERAF-KSFDV--------AC 443
FG +++AR + VAVK+ D Q E A FD C
Sbjct: 18 FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVC 77
Query: 444 DMMKKLVL--EYMPHGSLEKCL--------------------YSSNYI-LDIFQRLNIMI 480
+ K + L EYM +G L + L N + L ++L I
Sbjct: 78 AVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAK 137
Query: 481 DVALALEYL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
VA + YL F +H DL N L+G NMV ++DFG+++ + D
Sbjct: 138 QVAAGMAYLSERKF------VHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 184
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288 |
| >gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
V LA EYLH + II+ DLK N+LL +N L DFG AK L +++T
Sbjct: 102 VVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT 151
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262 |
| >gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 425 VKVFDLQYERAFKS-FDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVA 483
V + D+ ER KS M V YM H L L + + L Q M+ +
Sbjct: 70 VPLIDMAVERPDKSKRKRGSVYM---VTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLL 125
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
+ YLH I+H D+K +N+L+ N + ++DFG+A+
Sbjct: 126 EGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLAR 163
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 73/314 (23%), Positives = 106/314 (33%), Gaps = 84/314 (26%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
TL + S L SL+ L LS N +G IP +
Sbjct: 31 EGNTLGEEAAKA---LASALRPQPSLKELCLSLN-ETGRIPRGL---------------- 70
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGT---IHSSIFNLSSLSDLDLSHNN---------- 159
+ + L L+ L L +N L + S+ SSL +L L++N
Sbjct: 71 -QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129
Query: 160 --LTDVQIPNLENLLLWGNNFSGAIPH-----FIFNASKLSILELQKNSFFD-LIPNTFG 211
L D+ P LE L+L N GA N L L L N D I
Sbjct: 130 KGLKDLP-PALEKLVLGRNRLEGASCEALAKALRAN-RDLKELNLANNGIGDAGIRALAE 187
Query: 212 NL---INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ---SSQSLEVFSMFNCNISGG 265
L NL+ L+L +N LT L + S +SLEV ++ + N++
Sbjct: 188 GLKANCNLEVLDLNNNGLTDE-----------GASALAETLASLKSLEVLNLGDNNLTDA 236
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL---- 321
+++ ++ L L L S D +G + +
Sbjct: 237 GAAALAS----------------ALLSPNISLLTLSL-SCNDITDDGAK--DLAEVLAEK 277
Query: 322 ASLYELDLSGNKLS 335
SL ELDL GNK
Sbjct: 278 ESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
NL++L L N + L +L+L N+ + P F L +L+ L+L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 481 DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
++ LA EYLH S II+ DLK N+LL N ++DFG AK + D++FT
Sbjct: 126 ELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV--PDRTFT 174
|
Length = 329 |
| >gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 448 KLVLEYMPHGSLEKC-LYSSNYILDI-FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+++LE+M GSLE + ++ D+ Q L+ + YLH I+H D+K S
Sbjct: 148 QVLLEFMDGGSLEGTHIADEQFLADVARQILS-------GIAYLH---RRHIVHRDIKPS 197
Query: 506 NVLLGNNMVAHLSDFGMAKLL 526
N+L+ + ++DFG++++L
Sbjct: 198 NLLINSAKNVKIADFGVSRIL 218
|
Length = 353 |
| >gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 25/136 (18%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+G +YKAR + G AVK+ L+ F M+K+
Sbjct: 22 YGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKL 81
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+ +EY GSL+ +Y L Q + + L YLH S +H D+K +N+
Sbjct: 82 WICMEYCGGGSLQD-IYHVTGPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANI 137
Query: 508 LLGNNMVAHLSDFGMA 523
LL +N L+DFG+A
Sbjct: 138 LLTDNGDVKLADFGVA 153
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267 |
| >gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV E++ H L+ N LD + + + +E+ H S IIH D+K N+L
Sbjct: 77 LVFEFVDHTVLDDLEKYPNG-LDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENIL 132
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFT 534
+ + V L DFG A+ L + +T
Sbjct: 133 VSQSGVVKLCDFGFARTLAAPGEVYT 158
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286 |
| >gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 46/159 (28%)
Query: 409 FGSIYKARIQD------GMKVAVKVF-DLQYERAFKSFDVACDMMKK------------- 448
FG + KA VAVK+ D E+ +MMK
Sbjct: 25 FGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGV 84
Query: 449 --------LVLEYMPHGSLEKCL---------YSSNYILDIFQRL------NIMIDVALA 485
+V+EY HG+L L S + + L + VA
Sbjct: 85 CTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARG 144
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
+E+L S IH DL NVL+ + V ++DFG+A+
Sbjct: 145 MEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLAR 180
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293 |
| >gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 50/151 (33%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDM-----MKKL------------- 449
FGS+Y AR + G VA+K ++ F S++ ++ ++KL
Sbjct: 12 FGSVYLARNKETGELVAIKKM----KKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVF 67
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRL-------NIMIDVALALEYLH-FGY 493
V EYM E LY + D + +I+ + L ++H G+
Sbjct: 68 RENDELYFVFEYM-----EGNLY--QLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGF 120
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
H DLK N+L+ V ++DFG+A+
Sbjct: 121 ----FHRDLKPENLLVSGPEVVKIADFGLAR 147
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283 |
| >gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMI-DVALALEYLHFGYSTPIIHCDLKLSNV 507
L+L+Y+ G L L + Q + I ++ LALE+LH II+ D+KL N+
Sbjct: 82 LILDYINGGELFTHLSQRERFKE--QEVQIYSGEIVLALEHLH---KLGIIYRDIKLENI 136
Query: 508 LLGNNMVAHLSDFGMAKLLLKED 530
LL +N L+DFG++K +++
Sbjct: 137 LLDSNGHVVLTDFGLSKEFHEDE 159
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290 |
| >gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 429 DLQYERAFKSFDVACDMMKK---LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALA 485
+LQ+ER + + D +K + +EYMP GS++ L + + + R +
Sbjct: 60 NLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTR-KYTRQILEG 118
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
+ YLH S I+H D+K +N+L + L DFG +K L
Sbjct: 119 MSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRL 156
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266 |
| >gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 449 LVLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVALALEYLH-FGYSTPIIHCDLKLSN 506
+V+EYMP G L + SNY I + + R +V LAL+ +H G+ IH D+K N
Sbjct: 120 MVMEYMPGGDLVNLM--SNYDIPEKWARFYTA-EVVLALDAIHSMGF----IHRDVKPDN 172
Query: 507 VLLGNNMVAHLSDFG 521
+LL + L+DFG
Sbjct: 173 MLLDKSGHLKLADFG 187
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370 |
| >gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 409 FGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKKLVLEYM-PHGSLEK---CL 463
FG + AR+ + G AVKV L+ + + DV C M +K +L H L + C
Sbjct: 8 FGKVMLARLKESGRLYAVKV--LKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCF 65
Query: 464 YSSNYILDIFQRLN---IMI------------------DVALALEYLHFGYSTPIIHCDL 502
+ + + + + +N +M ++ AL +LH II+ DL
Sbjct: 66 QTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLH---DKGIIYRDL 122
Query: 503 KLSNVLLGNNMVAHLSDFGMAK 524
KL NVLL + L+DFGM K
Sbjct: 123 KLDNVLLDHEGHCKLADFGMCK 144
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320 |
| >gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.003
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+LV + MPHG L ++ + LN + +A + YL ++H DL NV
Sbjct: 84 QLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNV 140
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
L+ + ++DFG+A+LL +++ + +
Sbjct: 141 LVKSPNHVKITDFGLARLLEGDEKEYNAD 169
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303 |
| >gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 444 DMMKKLVLEYMPHGSLE---KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
+ +EY GSL+ K + + I V L YLH S IIH
Sbjct: 73 SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHR 129
Query: 501 DLKLSNVLLGNNMVAHLSDFGMA-KLLLKEDQSFT 534
D+K SN+LL L DFG++ +L+ +FT
Sbjct: 130 DIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFT 164
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287 |
| >gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 25/146 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFD------------------LQYERAFKSFDVACDMMK-KL 449
FG ++ + KVAVK LQ+++ + + V +
Sbjct: 19 FGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYI 78
Query: 450 VLEYMPHGSLEKCLYSSNYILDIFQRL-NIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+ EYM GSL L S + +L + +A + Y+ IH DL+ +NVL
Sbjct: 79 ITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVL 135
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFT 534
+ +++ ++DFG+A+++ ED +T
Sbjct: 136 VSESLMCKIADFGLARVI--EDNEYT 159
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261 |
| >gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL-LKEDQSFTQNTNTCHHR 543
L+YLH S I+H D+K N+L+ +N V + DFG+A++ E + TQ T ++R
Sbjct: 116 LKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYR 171
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372 |
| >gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 470 LDIFQRLNIMIDVALALEYL--HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527
LD L+I I +A +EYL HF +H DL N+L+G + +SD G+++ +
Sbjct: 121 LDHGDFLHIAIQIAAGMEYLSSHF-----FVHKDLAARNILIGEQLHVKISDLGLSREIY 175
Query: 528 KEDQSFTQNTNTCHHR-------IYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDV 580
D Q + R +YG + + G + + + L P +V
Sbjct: 176 SADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEV 235
Query: 581 NLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRL 625
+ + + + C +++L EC E P +R K+ TRL
Sbjct: 236 IEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRL 280
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283 |
| >gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+V+EY+ GSL + + +D Q + + ALE+LH + +IH D+K NVL
Sbjct: 93 VVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVL 147
Query: 509 LGNNMVAHLSDFGMAKLLLKE 529
LG + L+DFG + E
Sbjct: 148 LGMDGSVKLTDFGFCAQITPE 168
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296 |
| >gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 481 DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
++ AL YLH S +++ DLKL N++L + ++DFG L KE S T
Sbjct: 103 EIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFG----LCKEGISDGATMKT 154
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 449 LVLEYMPHGSLEKCLY---------SSNYILDIFQRLNIMIDVALALEYL---HFGYSTP 496
++LE M G L+ L SS + D+ L DVA +YL HF
Sbjct: 86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDL---LFCARDVAKGCKYLEENHF----- 137
Query: 497 IIHCDLKLSNVLL---GNNMVAHLSDFGMAK 524
IH D+ N LL G VA ++DFGMA+
Sbjct: 138 -IHRDIAARNCLLTCKGPGRVAKIADFGMAR 167
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 481 DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
+++LAL +LH II+ DLKL NVLL L+D+GM K
Sbjct: 104 EISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK 144
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.94 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.9 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.88 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.86 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.86 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.85 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.83 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.82 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.82 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.82 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.82 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.82 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.81 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.81 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.81 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.81 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.8 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.8 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.8 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.8 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.8 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.8 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.8 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.8 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.8 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.79 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.79 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.79 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.79 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.79 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.79 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.79 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.79 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.79 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.79 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.79 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.79 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.78 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.78 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.78 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.78 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.78 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.78 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.78 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.77 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.77 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.77 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.77 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.77 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.77 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.77 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.77 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.77 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.77 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.77 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.77 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.77 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.77 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.76 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.76 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.76 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.76 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.76 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.76 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.76 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.76 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.76 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.76 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.76 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.76 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.76 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.75 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.75 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.75 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.75 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.75 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.75 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.75 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.75 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.75 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.75 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.75 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.75 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.75 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.75 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.74 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.74 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.74 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.74 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.74 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.74 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.74 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.74 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.74 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.74 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.74 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.74 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.73 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.73 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.73 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.73 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.73 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.73 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.73 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.73 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.73 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.73 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.73 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.73 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.73 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.73 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.73 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.72 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.72 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.72 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.72 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.72 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.72 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.72 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.72 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.72 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.72 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.72 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.72 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.72 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.72 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.71 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.71 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.71 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.71 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.71 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.71 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.71 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.71 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.71 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.71 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.71 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.71 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.71 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.71 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.71 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.7 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.7 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.7 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.7 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.7 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.7 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.7 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.7 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.7 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.7 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.7 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.7 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.69 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.69 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.69 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.69 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.69 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.69 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.69 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.69 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.69 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.69 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.69 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.69 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.69 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.69 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.68 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.68 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.68 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.68 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.68 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.68 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.68 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.68 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.68 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.68 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.68 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.68 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.68 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.67 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.67 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.67 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.67 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.67 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.67 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.67 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.67 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.67 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.67 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.67 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.67 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.67 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.67 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.67 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.67 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.66 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.66 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.66 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.66 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.66 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.66 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.66 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.66 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.66 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.66 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.66 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.66 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.66 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.66 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.66 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.66 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.66 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.66 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.66 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.66 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.65 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.65 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.65 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.65 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.65 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.65 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.65 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.65 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.65 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.65 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.65 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.65 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.65 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.65 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.65 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.65 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.65 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.65 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.64 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.64 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.64 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.64 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.64 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.64 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.63 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.63 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.63 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.63 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.63 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.63 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.63 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.63 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.63 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.62 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.62 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.62 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.62 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.62 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.62 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.62 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.62 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.62 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.62 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.62 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.62 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.61 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.61 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.61 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.61 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.61 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.61 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.61 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.61 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.61 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.61 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.61 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.61 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.61 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.61 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.6 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.6 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.6 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.6 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.6 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.6 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.6 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.6 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.6 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.6 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.6 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.6 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.6 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.6 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.59 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.59 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.59 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.59 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.59 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.59 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.59 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.59 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.59 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.59 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.59 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.59 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.59 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.59 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.59 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.59 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.59 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.58 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.58 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.58 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.58 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.58 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.58 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.58 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.58 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.57 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.57 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.57 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.56 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.56 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.56 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.56 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.56 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.55 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.55 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.55 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.54 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.54 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.54 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.54 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.54 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.54 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.54 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.53 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.53 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.53 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.53 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.52 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.52 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.52 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.52 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.5 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.49 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.48 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.48 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.47 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.47 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.46 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.45 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.45 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.45 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.44 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.44 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.43 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.43 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.43 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.43 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.43 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.39 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.38 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.38 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.37 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.35 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.34 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.34 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.33 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 99.32 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 99.32 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.32 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.32 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.32 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.31 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.31 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 99.3 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.3 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.29 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.29 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.28 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 99.25 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.22 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.21 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 99.19 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.17 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.16 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.15 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.13 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.13 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.12 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.11 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.09 | |
| smart00090 | 237 | RIO RIO-like kinase. | 99.08 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.05 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.03 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 99.01 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.01 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 98.9 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 98.89 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 98.89 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.88 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.86 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 98.85 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 98.84 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.84 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.81 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.81 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.8 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.79 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 98.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.78 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.77 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.76 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 98.75 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 98.73 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 98.71 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.68 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 98.67 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.67 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 98.67 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.66 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 98.65 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.65 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.64 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 98.62 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 98.6 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 98.52 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 98.43 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 98.42 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 98.37 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 98.35 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 98.34 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 98.29 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 98.17 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.15 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 98.13 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.12 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.01 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 97.91 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 97.91 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.82 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.81 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 97.76 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.74 | |
| PF01163 | 188 | RIO1: RIO1 family; InterPro: IPR018934 Protein pho | 97.71 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.7 | |
| cd05146 | 197 | RIO3_euk RIO kinase family; eukaryotic RIO3, catal | 97.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.69 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 97.69 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.69 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 97.64 | |
| COG3642 | 204 | Mn2+-dependent serine/threonine protein kinase [Si | 97.61 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.55 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 97.5 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.46 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.4 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.39 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.38 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.36 | |
| PRK15123 | 268 | lipopolysaccharide core heptose(I) kinase RfaP; Pr | 97.29 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 97.13 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 97.11 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.08 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=640.26 Aligned_cols=606 Identities=31% Similarity=0.479 Sum_probs=393.5
Q ss_pred hhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCc
Q 041082 8 NHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNW 87 (639)
Q Consensus 8 ~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~ 87 (639)
..+..||++||+++ .+|.+.+.+ |...+++|.|.||+|+. ..+|+.|+|+++.++|.+|..|..+++|++|+|++|+
T Consensus 28 ~~~~~~l~~~~~~~-~~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 28 AEELELLLSFKSSI-NDPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred HHHHHHHHHHHHhC-CCCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 36889999999998 478777877 98888999999999985 3589999999999988888888888888888888888
Q ss_pred CCccCCcccc-CCcccceeeccCCcCC----------------------CCCCccccCCCCCcEEecccccCccccCccc
Q 041082 88 FSGSIPSSIF-NMSSLLSIYFNNNTLF----------------------GEIPEELGNLAELETLWLQNNFLTGTIHSSI 144 (639)
Q Consensus 88 l~~~~p~~~~-~l~~L~~L~L~~N~l~----------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 144 (639)
+.+.+|..+. .+++|++|+|++|.++ +.+|..++++++|++|+|++|.+.+.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8877776654 5555555555555444 4455556666666666666666666666666
Q ss_pred cCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCE
Q 041082 145 FNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKR 218 (639)
Q Consensus 145 ~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 218 (639)
.++++|++|+|++|.+++. .+++|+.|+|++|++++.+|..+.++++|+.|++++|.+.+.+|..|+++++|++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 6666666666666665431 2445555555555555555555555555555555555554444444444444444
Q ss_pred EEccCCCCC------------------------CCCCcchhhccccCCcchhh--------------h------------
Q 041082 219 LNLYDNYLT------------------------SSTPELSFLYSLSNCKYLEQ--------------S------------ 248 (639)
Q Consensus 219 L~Ls~N~l~------------------------~~~~~~~~~~~l~~l~~l~~--------------~------------ 248 (639)
|++++|.++ +..|.. +..+.++..+.. .
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh--HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 444444443 322210 011111111110 0
Q ss_pred ------------ccCccEEEeecCccccccchhh------------------------cCCCCCCEEECCCCCCCccccc
Q 041082 249 ------------SQSLEVFSMFNCNISGGILEEI------------------------SNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 249 ------------~~~l~~l~l~~n~l~~~~~~~~------------------------~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
..+|+.+++++|++.+.+|..+ ..+++|+.|++++|++++.+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 1234445555444443333222 2222333333333333333332
Q ss_pred cccCCcC-----------------------------------------------CcEEEccCCcCCCCCchhhcCCCCCc
Q 041082 293 TLCKLQK-----------------------------------------------LQLLSFVDNKLEGPIPYEFCRLASLY 325 (639)
Q Consensus 293 ~~~~l~~-----------------------------------------------L~~L~l~~N~l~~~~p~~~~~l~~L~ 325 (639)
.+..++. |+.|++++|++.+.+|..|..+++|+
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccC
Confidence 2222222 22333333334444444555556666
Q ss_pred EEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCC
Q 041082 326 ELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 326 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
.|++++|.+++.+|..+..+++|++|++++|.+++.+|..|..+++|+.|++++|++++.+|..+..+..|+.+++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 66666666666667777777777777777777777777777777778888888888877777777777777777777776
Q ss_pred CCC-----------------------------------------------------------------------------
Q 041082 406 FSG----------------------------------------------------------------------------- 408 (639)
Q Consensus 406 l~g----------------------------------------------------------------------------- 408 (639)
+.|
T Consensus 583 l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (968)
T PLN00113 583 LHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKR 662 (968)
T ss_pred ceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 542
Q ss_pred ----------------------------------------cCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH-
Q 041082 409 ----------------------------------------FGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM- 446 (639)
Q Consensus 409 ----------------------------------------~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~- 446 (639)
+|.||++.. .++..+|+|.+....... ..+++.+
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~l~ 738 (968)
T PLN00113 663 VENEDGTWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMG 738 (968)
T ss_pred cccccccccccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----HHHHHHHh
Confidence 344666654 356677777765322111 1122221
Q ss_pred -------------------HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCce
Q 041082 447 -------------------KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507 (639)
Q Consensus 447 -------------------~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~ni 507 (639)
..+|||||++|+|.++++. ++|.++.+||.++|+|++|||+.+.++|+|||+||+||
T Consensus 739 ~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Ni 814 (968)
T PLN00113 739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKI 814 (968)
T ss_pred hCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhE
Confidence 2379999999999999863 89999999999999999999998899999999999999
Q ss_pred eecCCcceeeccccccccccccCC-------Ccc----ccccccccccc--c-------CCCCCCCccCCCccchHHHHH
Q 041082 508 LLGNNMVAHLSDFGMAKLLLKEDQ-------SFT----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN 567 (639)
Q Consensus 508 ll~~~~~~~i~dfgla~~~~~~~~-------~~~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~ 567 (639)
+++.++.+++. ||.+.....+.. ..+ ....+.++||| | ||+.|.+..+.....+.+|++
T Consensus 815 l~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~ 893 (968)
T PLN00113 815 IIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWAR 893 (968)
T ss_pred EECCCCceEEE-eccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHH
Confidence 99999998875 665543322110 011 11234489999 7 999998776666778999998
Q ss_pred hhCCCC-cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 568 DLLPIS-VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 568 ~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...... ..+.+|+.+.... ....+++.++.+++.+|++.+|++||+|.||+++|+++...
T Consensus 894 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~ 954 (968)
T PLN00113 894 YCYSDCHLDMWIDPSIRGDV----SVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS 954 (968)
T ss_pred HhcCccchhheeCccccCCC----CccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence 765443 5567787765421 23356788899999999999999999999999999988653
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=324.96 Aligned_cols=219 Identities=36% Similarity=0.516 Sum_probs=179.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH---------------------HhhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------KKLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~l~~ 465 (639)
.|||.||+|.+.+|..+|||+++....+..++|..|+..+ ..||||||++|+|.++|+.
T Consensus 86 Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~ 165 (361)
T KOG1187|consen 86 GGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHG 165 (361)
T ss_pred CCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCC
Confidence 3689999999999999999988754432145698888873 4689999999999999998
Q ss_pred CCc-cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc-cCCCc----------
Q 041082 466 SNY-ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK-EDQSF---------- 533 (639)
Q Consensus 466 ~~~-~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~-~~~~~---------- 533 (639)
... .++|.+|++||.|+|+||+|||+.|.|+|+||||||+|||||++++|||+|||+|+.... .....
T Consensus 166 ~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~ 245 (361)
T KOG1187|consen 166 KKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYL 245 (361)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccC
Confidence 555 899999999999999999999999999999999999999999999999999999987654 22110
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccC-CCccchHHHHHhhCCC-CcceeeeccccccccccccchHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFF-SGEMTLKSWVNDLLPI-SVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~-~~~~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
+. ...+.|+||| | ||++|.+... .+...+++|+...+.+ ...+++||++.... ....+++
T Consensus 246 ~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~----~~~~~~~ 321 (361)
T KOG1187|consen 246 APEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGE----YPDEKEV 321 (361)
T ss_pred ChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCC----CChHHHH
Confidence 11 1233499999 7 9998888653 4456799999877766 58999999987311 1112789
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+++++|++|++.+|++||+|.||+++|+.+.
T Consensus 322 ~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~ 353 (361)
T KOG1187|consen 322 KKLAELALRCLRPDPKERPTMSQVVKELEGIL 353 (361)
T ss_pred HHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence 99999999999999999999999999996654
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=362.50 Aligned_cols=337 Identities=33% Similarity=0.513 Sum_probs=263.4
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++.+|..|+++++|++|+|++|.+.+.+|..|+++++|+.|++++|.+.+.+|..+.++++|++|+|
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
++|.+.+.+|..+.++++|+.|++++|.+++. .+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+.+.
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 88888888888788888888888888877642 356677777777777777776666666677777666666665
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcc-h---------------------hhccccCCcchhh--------------hc
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPEL-S---------------------FLYSLSNCKYLEQ--------------SS 249 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~---------------------~~~~l~~l~~l~~--------------~~ 249 (639)
+|..+..+++|+.|++++|.+.+..|.. . .+..+..+..+.. ..
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 5555555555555555555544332210 0 0111122211111 13
Q ss_pred cCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEEC
Q 041082 250 QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDL 329 (639)
Q Consensus 250 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L 329 (639)
.+|+.|++++|.+.+.+|..+ ..++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 456777777777777666654 3578888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccc
Q 041082 330 SGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE 389 (639)
Q Consensus 330 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 389 (639)
++|.+++.+|..|..+++|+.|++++|++.+.+|..+..++.|+.+++++|++.+.+|..
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999999999999999999999999999999999999999999999988853
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=307.86 Aligned_cols=342 Identities=24% Similarity=0.226 Sum_probs=225.5
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
+..||+++|.++..-+..|-++++||.+++.+|.++ .||.......+|+.|+|.+|.|...-.+++..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 344555555555544455555555555555555555 4555444445555555555555555555555555555555555
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
|.|+.+.-.+|..-.++++|+|++|.|+.+. +.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-...
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 5555433334444455555555555555432 3455555555555554444445555555555555555543333
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
-.|..|++|+.|.|..|.+.....+.+ +. ..++++++++.|+++..--..+.+++.|+.|+||+|.|.
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~----------l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAF--YG----------LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcce--ee----------ecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 445555555555555555544322211 11 346778888888887766777788888888888888888
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchh---
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPS--- 364 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--- 364 (639)
..-+.++...++|++|+|++|+|+...+.+|..+.+|+.|+|++|.++......|..+++|+.|||++|.+...+.+
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 77778888888888888888888888888888888888888888888877777888888888888888888776654
Q ss_pred hhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 365 TLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 365 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.|..++.|+.|.+.+|++......+|..+..|+.|||.+|.|..
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 46678888888888888877777788888888888888887754
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-34 Score=287.33 Aligned_cols=340 Identities=25% Similarity=0.267 Sum_probs=302.7
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.+++..|.++ .+|...+...+|+.|+|.+|.|+..-.+++..++.|+.||||.|.|+...-.+|..-.++++|+|+
T Consensus 103 nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 5778888888887 678777777789999999999998888999999999999999999987777789888999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 206 (639)
+|.|+..-.+.|.++.+|..|.|+.|+|+.++ ++.|+.|+|..|++.-.--..|..+.+|+.|.|..|.+..+.
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 99999888889999999999999999999863 899999999999997544567889999999999999999999
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC
Q 041082 207 PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286 (639)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 286 (639)
...|-.+.++++|+|..|++......+- + ++ ..|+.|++++|.+....++.++-.++|+.|+|++|+|
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~l--f---gL-------t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWL--F---GL-------TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred Ccceeeecccceeecccchhhhhhcccc--c---cc-------chhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 9999999999999999999987654432 1 22 3678899999999998899999999999999999999
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC---ccccCCCCCCEEeCCCCcCcccch
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP---TCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
+...+..|..+..|+.|+|++|.+...-..+|..+++|+.|||++|.+++.+. ..|.++++|+.|.+.+|++..+.-
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 98888999999999999999999998888899999999999999999998764 457889999999999999999999
Q ss_pred hhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
..|.++..|+.|||.+|.+...-|.+|..+ .|..|-+..-.|
T Consensus 410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 999999999999999999999889999988 777776655443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-32 Score=278.53 Aligned_cols=343 Identities=28% Similarity=0.386 Sum_probs=269.8
Q ss_pred cEEEEEeCCCCCc-ccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 53 RVTTLNISGLSLT-STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 53 ~v~~L~L~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
-|...|+++|.++ +..|.+...++.++.|.|....+. .+|++++.+.+|++|.+++|++. .+-.+++.|+.|+.+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence 3677888999988 577888888999999999888887 78999999999999999999886 35567888889999999
Q ss_pred ccccCc-cccCccccCCCCCCEEecCCCCCCCCC-----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 132 QNNFLT-GTIHSSIFNLSSLSDLDLSHNNLTDVQ-----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 132 ~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
.+|++. .-+|..++.+..|+.||||+|+++..+ ..++-.|+||+|+|.....+.|.+++.|-.||||+|++..+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence 998884 346778888999999999999988754 45778899999999855445666888899999999998765
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh---------------hhccCccEEEeecCccccccchhh
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE---------------QSSQSLEVFSMFNCNISGGILEEI 270 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~---------------~~~~~l~~l~l~~n~l~~~~~~~~ 270 (639)
.| .+..+..|++|+|++|.+.... +..++++..+..|. ....+|..++++.|++. ..|+.+
T Consensus 166 PP-Q~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 166 PP-QIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred CH-HHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 44 5778888999999998765310 01111222222111 11345667788888887 478888
Q ss_pred cCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc-cCCccccCCCCCC
Q 041082 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLR 349 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~ 349 (639)
..+++|+.|+||+|.|+ .+........+|++|+++.|+++ .+|.++|.++.|+.|.+.+|+++- -+|..++.+.+|+
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 88899999999999887 44555667788889999999987 678899999999999999998763 3688889999999
Q ss_pred EEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCC
Q 041082 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 350 ~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
++..++|.+. ..|..++.+..|+.|.|++|++. .+|..+--++.|..||+..|+
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 8888877764 57888999999999999999875 478888888889999998885
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-31 Score=256.76 Aligned_cols=341 Identities=29% Similarity=0.437 Sum_probs=225.8
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
+..++..+|+++ .+|++++++.+|..|++.+|++.. +|...-+|+.|++||..+|-+ +.+|++++.|.+|.-|+|..
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhh
Confidence 444556666665 456666677777777777777764 344444477777777777765 45677778888888888888
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
|++. ..| +|.++..|++|+++.|.|+.+ .++.+..|||.+|++. ..|..+.-+.+|+.||+|+|.+++. |
T Consensus 216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p 291 (565)
T KOG0472|consen 216 NKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-P 291 (565)
T ss_pred cccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-C
Confidence 8876 455 677788888888888877764 3778888888888887 6788888888888889988888876 4
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCc------chhhc---------------------------------cccCCcchhhh
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPE------LSFLY---------------------------------SLSNCKYLEQS 248 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~---------------------------------~l~~l~~l~~~ 248 (639)
..++++ +|+.|.+.+|.+..+-.+ ...+. .+.+.+.+...
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 568888 888888888876421100 00000 00000000000
Q ss_pred ----------------ccCccEEEeecCccccccchhhcCCCCCC-EEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 249 ----------------SQSLEVFSMFNCNISGGILEEISNLTNLT-AIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 249 ----------------~~~l~~l~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
..-+..++++.|++.. +|..+..++.+. .+.+++|.+ +-+|..++.+++|..|++++|-+.
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh
Confidence 0112333444444332 232222222222 223333333 345666677777777777766665
Q ss_pred CCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccc
Q 041082 312 GPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG 391 (639)
Q Consensus 312 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 391 (639)
.+|..++.+..|+.|+++.|++. .+|.+...+..++.+-.++|++..+.|+.+.++.+|..|||.+|.+. .+|+.++
T Consensus 449 -~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 449 -DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG 525 (565)
T ss_pred -hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence 56677777777777777777776 56777666666777767778888888888888999999999988874 5788899
Q ss_pred cccccccccccCCCCC
Q 041082 392 NLKVLVGIDLSMNNFS 407 (639)
Q Consensus 392 ~l~~L~~l~ls~N~l~ 407 (639)
++.+|+.|++++|+|.
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 9999999999999985
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-29 Score=258.95 Aligned_cols=328 Identities=28% Similarity=0.349 Sum_probs=275.5
Q ss_pred CCCCCCEEeccCCcCC-ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 74 NLSSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
-|+-.+-.|+++|.++ +..|.....|++++.|.|...++. .+|++++.+.+|+.|.+++|++. .+.+.+..|+.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 3556788999999999 689999999999999999999885 68999999999999999999998 56678999999999
Q ss_pred EecCCCCCCC-------CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCC
Q 041082 153 LDLSHNNLTD-------VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225 (639)
Q Consensus 153 L~Ls~N~l~~-------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 225 (639)
+.+..|++.. +.+..|+.||||+|++. ..|..+....++.+|+||+|+|..+.-..|.+++.|-.||||+|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999999975 24778999999999997 778888899999999999999987766778899999999999999
Q ss_pred CCCCCCcchhhccccCCcc---------hh--hhccCccEEEeecCcc-ccccchhhcCCCCCCEEECCCCCCCcccccc
Q 041082 226 LTSSTPELSFLYSLSNCKY---------LE--QSSQSLEVFSMFNCNI-SGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293 (639)
Q Consensus 226 l~~~~~~~~~~~~l~~l~~---------l~--~~~~~l~~l~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 293 (639)
+...||....+..+..+.- |. .+.++|++|.+++.+= ...+|.++..+.+|..+++|.|.+. .+|..
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 9998886654433322110 00 1134666777776543 3457888888999999999999987 68899
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCC
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDI 372 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L 372 (639)
+.++.+|+.|+|++|+|+. +....+...+|+.|+||.|+++ .+|.++..++.|+.|.+.+|+++ .-+|+.++.+..|
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 9999999999999999874 4455666778999999999998 78999999999999999999886 3488999999999
Q ss_pred cEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 373 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
..+..++|.+ ...|..+..+..|+.|.|++|++..
T Consensus 319 evf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 319 EVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred HHHHhhcccc-ccCchhhhhhHHHHHhcccccceee
Confidence 9999988886 5688999999999999999999854
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=235.74 Aligned_cols=225 Identities=27% Similarity=0.366 Sum_probs=155.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh--hhhHHHHHHHHH---------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA--FKSFDVACDMMK---------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~--~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.+.+-..||+|.+....... ...|..|+.++. .+|+|||++|+|.+++
T Consensus 52 G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l 131 (362)
T KOG0192|consen 52 GSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLL 131 (362)
T ss_pred CCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHH
Confidence 46899999999876669999987543221 457888887754 3799999999999999
Q ss_pred cc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCcccccccc-
Q 041082 464 YS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSFTQNTNTC- 540 (639)
Q Consensus 464 ~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~~~~~~~~- 540 (639)
+. ....++|..++++|.+||+||.|||+. .+ |||||||+.|||++.++ .+||+|||+++.........+...+|.
T Consensus 132 ~~~~~~~l~~~~~l~~aldiArGm~YLH~~-~~-iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~ 209 (362)
T KOG0192|consen 132 HKKRKRKLPLKVRLRIALDIARGMEYLHSE-GP-IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYR 209 (362)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CC-eeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCcc
Confidence 87 467899999999999999999999943 22 99999999999999997 999999999987654211111111221
Q ss_pred --ccccc-cC--CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc-cccccccccchHHHHHHHHHHHhhccCCCCCC
Q 041082 541 --HHRIY-GT--RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL-LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQ 614 (639)
Q Consensus 541 --~~dvy-Gt--g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~ 614 (639)
+..|+ +. .-....|+|+.|+.+|+.+....|......+...- ......+++.+.+|...+..++.+||+.+|++
T Consensus 210 wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~ 289 (362)
T KOG0192|consen 210 WMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSR 289 (362)
T ss_pred ccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCc
Confidence 11111 11 01122345566666666665555543211111000 00001122334457778888899999999999
Q ss_pred CCCHHHHHHHHHHhHHHHH
Q 041082 615 RINAKESVTRLLKIRDLLL 633 (639)
Q Consensus 615 RP~m~~v~~~l~~~~~~~~ 633 (639)
||++.+|+.+|+.+...+.
T Consensus 290 RP~f~ei~~~l~~~~~~~~ 308 (362)
T KOG0192|consen 290 RPSFLEIVSRLESIMSHIS 308 (362)
T ss_pred CCCHHHHHHHHHHHHHhhc
Confidence 9999999999999977653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-29 Score=246.02 Aligned_cols=240 Identities=29% Similarity=0.417 Sum_probs=113.9
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
..+.+++|.+.. +.+.+.+|..|.+|++++|++. .+|.+++.+..++.|+.++|++. .+|+.++++.+|..|+.++|
T Consensus 48 ~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 48 QKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 334455554442 2233444455555555555554 34445555555555555555443 34444455555555555555
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCC-----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
.+. .+|++++.+..|..|+..+|+++..+ +.+|..+++.+|++....|..+. ++.|+.+|+..|-+. .+|+.
T Consensus 125 ~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 125 ELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred cee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChh
Confidence 544 33444444444555555555444321 23344444444444433332222 444444444444332 22333
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh-----------------hhccCccEEEeecCccccccchhhcC
Q 041082 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE-----------------QSSQSLEVFSMFNCNISGGILEEISN 272 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~-----------------~~~~~l~~l~l~~n~l~~~~~~~~~~ 272 (639)
++.+.+|+.|+|.+|++...| + +..|..+. ...+++.+|++..|++.. .|+++.-
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-e------f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~cl 273 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-E------FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL 273 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-C------CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHH
Confidence 444444444444444443322 1 11111110 012455666666666653 5666666
Q ss_pred CCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcC
Q 041082 273 LTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKL 310 (639)
Q Consensus 273 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 310 (639)
+.+|.+||+|+|.|+ .+|..++++ +|+.|.+.+|.+
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 666667777776666 345566666 666666666644
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-26 Score=229.94 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=156.4
Q ss_pred CcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc-C
Q 041082 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS-S 466 (639)
Q Consensus 408 g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~-~ 466 (639)
.||.|+.|.+.+...||+|.+..... ....|..|.++|+. +|+|||++|+|.++|.. .
T Consensus 218 ~FG~V~~g~~~~~~~vavk~ik~~~m-~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~ 296 (468)
T KOG0197|consen 218 QFGEVWLGKWNGSTKVAVKTIKEGSM-SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTRE 296 (468)
T ss_pred ccceEEEEEEcCCCcccceEEecccc-ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcC
Confidence 48999999999888999999876432 34678888888764 68999999999999986 5
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc-c----cc-
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT-N----TC- 540 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~-~----~~- 540 (639)
...+.-.+.+.+|.|||+||+||+ +..+|||||-++|||++++..|||+||||||...++.+..+... . ++
T Consensus 297 ~~~l~~~~Ll~~a~qIaeGM~YLe---s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAP 373 (468)
T KOG0197|consen 297 GGLLNLPQLLDFAAQIAEGMAYLE---SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAP 373 (468)
T ss_pred CCccchHHHHHHHHHHHHHHHHHH---hCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCH
Confidence 567889999999999999999999 77899999999999999999999999999996555443211100 0 00
Q ss_pred ccccccCCCCCCCccCCCccchHHHHHh-hCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHH
Q 041082 541 HHRIYGTRRNPQMNFFSGEMTLKSWVND-LLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAK 619 (639)
Q Consensus 541 ~~dvyGtg~~p~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~ 619 (639)
++-.| ...+-.+|+++.|+.|++.++. ..|...+...|.--.-..+++...++.|...+.+|+..||+.+|++|||+.
T Consensus 374 Ea~~~-~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~ 452 (468)
T KOG0197|consen 374 EALNY-GKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFE 452 (468)
T ss_pred HHHhh-CCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHH
Confidence 00001 1122334455556666555432 222221111111001122345677888999999999999999999999999
Q ss_pred HHHHHHHHhHH
Q 041082 620 ESVTRLLKIRD 630 (639)
Q Consensus 620 ~v~~~l~~~~~ 630 (639)
.....++++..
T Consensus 453 ~L~~~l~~~~~ 463 (468)
T KOG0197|consen 453 TLREVLEDFFT 463 (468)
T ss_pred HHHHHHHHhhh
Confidence 88888877654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-26 Score=240.71 Aligned_cols=366 Identities=30% Similarity=0.350 Sum_probs=239.7
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
++..||+++|.++ ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.+|.+. ..|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 5889999999885 67888999999999999999998 68899999999999999999875 689999999999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCC-CCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHN-NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
.|.+. .+|..+..++.+..+..++| .+..+.-..++.++|..|.+.+.++..+.+++. .|+|.+|.+... .+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhh
Confidence 99996 78888899999999999999 333333344777888888888777777666655 678888877622 245
Q ss_pred CCCCCCEEEccCCCCCCCC---CcchhhccccC-Ccch--hhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCC
Q 041082 212 NLINLKRLNLYDNYLTSST---PELSFLYSLSN-CKYL--EQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~---~~~~~~~~l~~-l~~l--~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 285 (639)
.+.+|+.+....|++.... +....+....+ +..+ .....++++++++.|++++ +|+.++.+.+|+.++..+|+
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchh
Confidence 5666666666666654321 11111100000 0000 0113467777777777775 44777777777777777777
Q ss_pred CCc----------------------cccccccCCcCCcEEEccCCcCCCCCchhh-------------------------
Q 041082 286 LNG----------------------SIPITLCKLQKLQLLSFVDNKLEGPIPYEF------------------------- 318 (639)
Q Consensus 286 l~~----------------------~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~------------------------- 318 (639)
++. -+|....+++.|++|+|..|+|...++..|
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 642 234455556677777777776643221110
Q ss_pred cCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCC--------------
Q 041082 319 CRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS-------------- 384 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-------------- 384 (639)
..++.|+.|.+.+|.++...-..+.+...|++|+|++|++.......+.++..|+.|+||+|.++.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 011223334444444443333344455666666666666665555556666666666666665532
Q ss_pred --------CCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 385 --------PLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 385 --------~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
.+| ++..++.|..+|+|.|+++....-+...+ ..+|.++++.+.
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-----p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-----PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-----cccceeeccCCc
Confidence 244 66677788888888888875332222111 456777776654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-25 Score=234.54 Aligned_cols=342 Identities=29% Similarity=0.356 Sum_probs=174.6
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCC-------
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAE------- 125 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~------- 125 (639)
++..|+++.|-+. ..|.+..++.+|++|+|.+|.+. .+|.++..+++|+.|+++.|.+. .+|..+..+..
T Consensus 69 ~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence 3444555555544 34455555555555555555554 45555555555555555555543 33333333322
Q ss_pred ------------CcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-----------------------CCCCccE
Q 041082 126 ------------LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-----------------------QIPNLEN 170 (639)
Q Consensus 126 ------------L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------------~l~~L~~ 170 (639)
++.++|..|.+.+.++..+..++. .|+|..|.++.. .-++|+.
T Consensus 146 ~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~ 223 (1081)
T KOG0618|consen 146 NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTA 223 (1081)
T ss_pred cchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchhe
Confidence 333333334444444444444443 455665555421 1234444
Q ss_pred EEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcccc-------CCc
Q 041082 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS-------NCK 243 (639)
Q Consensus 171 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-------~l~ 243 (639)
|+.++|.+....+. .-..+|+.+++++|++++. |++++.+.+|+.++..+|+++..+.......++. .+.
T Consensus 224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeeccCcceeeccc--cccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence 55555554422211 1234667777777777654 3667777777777777776654433222111111 111
Q ss_pred chhhh---ccCccEEEeecCccccccchhhc-------------------------CCCCCCEEECCCCCCCcccccccc
Q 041082 244 YLEQS---SQSLEVFSMFNCNISGGILEEIS-------------------------NLTNLTAIYLAGNKLNGSIPITLC 295 (639)
Q Consensus 244 ~l~~~---~~~l~~l~l~~n~l~~~~~~~~~-------------------------~l~~L~~L~Ls~N~l~~~~p~~~~ 295 (639)
++... ..++++|++..|++.......+. .++.|+.|++.+|.++...-..+.
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 11111 23455666666655432211110 122355566666666655545555
Q ss_pred CCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEE
Q 041082 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYL 375 (639)
Q Consensus 296 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 375 (639)
+.++|+.|+|++|++...+...+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++.. .| .+..++.|+.+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVL 457 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEE
Confidence 6666666666666666444455566666666666666666 355666666666666666666554 33 55666666666
Q ss_pred EcccCCCCCCCccccccccccccccccCCC
Q 041082 376 NLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 376 ~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
|+|.|+++...-..-..-++|++||+++|.
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 666666654322222222566666666664
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=197.73 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=134.5
Q ss_pred cCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 409 FGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
-|+||++... .+...|+|.+..... ...++..+|+++.+ .++||||.+|||.+.+..
T Consensus 92 gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~ 171 (364)
T KOG0581|consen 92 GGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKR 171 (364)
T ss_pred CcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhh
Confidence 4789999864 679999999954432 33456677777632 378999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~------- 535 (639)
. ..++....-+||.+|.+||.|||+ ...||||||||+|||+...+++||||||.++.+...... .+.
T Consensus 172 ~-g~i~E~~L~~ia~~VL~GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPER 248 (364)
T KOG0581|consen 172 V-GRIPEPVLGKIARAVLRGLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPER 248 (364)
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhh
Confidence 3 347888889999999999999996 378999999999999999999999999999987654210 010
Q ss_pred ---cccccccccccCCCCCCCccCCCccchHHHHHhhCCCC--------cceeeeccccccccccccchH-HHHHHHHHH
Q 041082 536 ---NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPIS--------VMEVVDVNLLSMEDKYFTTKK-QCLSFVFNL 603 (639)
Q Consensus 536 ---~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~--------~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~l 603 (639)
...+.++||| +-|..+.+.+...+|.. ..+.++.-+.++ .+..+. .+-.++...
T Consensus 249 i~g~~Ys~~sDIW-----------SLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~p---pP~lP~~~fS~ef~~F 314 (364)
T KOG0581|consen 249 ISGESYSVKSDIW-----------SLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEP---PPRLPEGEFSPEFRSF 314 (364)
T ss_pred hcCCcCCccccee-----------cccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCC---CCCCCcccCCHHHHHH
Confidence 0112255555 33444444333333221 011111111111 011122 255567778
Q ss_pred HhhccCCCCCCCCCHHHHHH
Q 041082 604 AMECTAESPKQRINAKESVT 623 (639)
Q Consensus 604 ~~~C~~~~p~~RP~m~~v~~ 623 (639)
.-.|++.+|++||+..|.++
T Consensus 315 V~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 315 VSCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred HHHHhcCCcccCCCHHHHhc
Confidence 88999999999999999885
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-22 Score=218.97 Aligned_cols=261 Identities=25% Similarity=0.330 Sum_probs=180.0
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
-..|++++++++ .+|..+. ++|+.|++++|+++ .+|.. +++|+.|++++|+++. +|.. .++|+.|+|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 356899999998 5787776 48999999999998 46753 5789999999999885 4543 36788999999
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCCC--CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ--IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
|.++. +|.. .++|+.|++++|.++.++ +++|+.|+|++|++++ +|.. ..+|+.|++++|.+.++ |.
T Consensus 272 N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~--- 339 (788)
T PRK15387 272 NPLTH-LPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PT--- 339 (788)
T ss_pred Cchhh-hhhc---hhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCccccc-cc---
Confidence 99874 4443 356888999999988764 4688888998888885 4442 24577888888888753 43
Q ss_pred CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc
Q 041082 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 291 (639)
...+|+.|+|++|++++.++. ..+++.|++++|.+.+ +|.. .++|+.|++++|.|++ +|
T Consensus 340 lp~~Lq~LdLS~N~Ls~LP~l----------------p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 340 LPSGLQELSVSDNQLASLPTL----------------PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred cccccceEecCCCccCCCCCC----------------Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CC
Confidence 124788888888888765421 1245556666666664 4432 2457777777777764 44
Q ss_pred ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 366 (639)
.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+
T Consensus 399 ~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 399 VL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred Cc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 32 2456677777777764 4432 234566777777776 456666667777777777777776666555
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=209.60 Aligned_cols=218 Identities=20% Similarity=0.349 Sum_probs=150.1
Q ss_pred CcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC
Q 041082 408 GFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 408 g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~ 466 (639)
.||+||+|.+.+ .||||.++.... ...+.|..|+..+|. +|..++++-+|+.++|-.
T Consensus 404 sFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCeGsSLY~hlHv~ 481 (678)
T KOG0193|consen 404 SFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCEGSSLYTHLHVQ 481 (678)
T ss_pred cccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhccCchhhhhccch
Confidence 489999999984 589999987653 346789999988653 456677888999999987
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc--cCCCcccccccc---c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK--EDQSFTQNTNTC---H 541 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~--~~~~~~~~~~~~---~ 541 (639)
...++..+..+||.+||+||.||| ...|||||||+.||++.++..+||+|||+|-.-.. .........+.. +
T Consensus 482 etkfdm~~~idIAqQiaqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmA 558 (678)
T KOG0193|consen 482 ETKFDMNTTIDIAQQIAQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMA 558 (678)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhc
Confidence 778999999999999999999999 88999999999999999999999999999853221 110000000000 0
Q ss_pred cccc--c--CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccc--ccc---cccccchHHHHHHHHHHHhhccCCCC
Q 041082 542 HRIY--G--TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL--SME---DKYFTTKKQCLSFVFNLAMECTAESP 612 (639)
Q Consensus 542 ~dvy--G--tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~--~~~---~~~~~~~~~~~~~~~~l~~~C~~~~p 612 (639)
..|- + -...+..|+|..|..+-|.....+|.. ...-|.-|. +.. .+.......|...+.+|...||..++
T Consensus 559 PEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~ 637 (678)
T KOG0193|consen 559 PEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDR 637 (678)
T ss_pred HHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCc
Confidence 0000 0 122344455555555555555555543 211222111 000 00111224577788999999999999
Q ss_pred CCCCCHHHHHHHHHHhHHH
Q 041082 613 KQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 613 ~~RP~m~~v~~~l~~~~~~ 631 (639)
++||.+.+++.+|+.+..+
T Consensus 638 ~eRP~F~~il~~l~~l~~~ 656 (678)
T KOG0193|consen 638 EERPLFPQLLSKLEELLPS 656 (678)
T ss_pred ccCccHHHHHHHHHHhhhc
Confidence 9999999999999888665
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=216.39 Aligned_cols=265 Identities=24% Similarity=0.342 Sum_probs=208.6
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEec
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 155 (639)
..-..|+|+.|.++ .+|..+. ++|+.|++++|+++. +|.. +++|++|+|++|+|+. +|.. .++|+.|+|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 45678999999998 6888876 489999999999985 5643 5889999999999985 4543 468999999
Q ss_pred CCCCCCCCC--CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 156 SHNNLTDVQ--IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 156 s~N~l~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
++|.|+.++ +.+|+.|++++|+++. +|.. +++|+.|++++|++.++ |.. ...|+.|++++|++++.+.
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~LP~-- 339 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSLPT-- 339 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CCC---cccccccccccCccccccc--
Confidence 999998764 4689999999999984 4543 46899999999999875 432 3468889999999986542
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
...+|+.|++++|++++ +|.. .++|+.|++++|.|++ +|.. ..+|+.|++++|++++
T Consensus 340 --------------lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~- 396 (788)
T PRK15387 340 --------------LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS- 396 (788)
T ss_pred --------------cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-
Confidence 11368899999999986 4432 3578889999999985 5643 3578999999999985
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 392 (639)
+|.. .++|+.|++++|.++. +|..+ .+|+.|++++|+++. +|..+..+++|..+++++|++++..|..+..
T Consensus 397 LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 4433 3679999999999985 56543 467889999999985 6888999999999999999999887776644
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=224.03 Aligned_cols=311 Identities=21% Similarity=0.251 Sum_probs=158.5
Q ss_pred cCCcCCCCCC-CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCcccc
Q 041082 67 TIPSELGNLS-SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145 (639)
Q Consensus 67 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 145 (639)
.+|..|..++ +|+.|++.++.+. .+|..| ...+|+.|++.+|++. .+|..+..+++|+.|+|++|...+.+| .+.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccc
Confidence 3455554443 3666666666554 455554 3456666666666554 345555566666666666554434444 255
Q ss_pred CCCCCCEEecCCCC-CCCC-----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEE
Q 041082 146 NLSSLSDLDLSHNN-LTDV-----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRL 219 (639)
Q Consensus 146 ~l~~L~~L~Ls~N~-l~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 219 (639)
.+++|+.|+|++|. +..+ .+++|+.|++++|...+.+|..+ ++++|+.|++++|...+..|.. .++|+.|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 56666666665543 2221 24556666666554444455443 4566666666666544444432 3455666
Q ss_pred EccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCc-------cccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCN-------ISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 220 ~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
++++|.+...+... .+. +|+.|.+.++. +....+......++|+.|++++|...+.+|.
T Consensus 731 ~L~~n~i~~lP~~~----~l~----------~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 731 DLDETAIEEFPSNL----RLE----------NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred ecCCCccccccccc----ccc----------ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence 66666655433221 011 12222222211 0000111112234566666666655555566
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCC
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 372 (639)
.++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|.+.. +|..+..+++|
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L 871 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNL 871 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCC
Confidence 66666666666666554434444443 4556666666665443334432 2455666666666553 45556666666
Q ss_pred cEEEcccCCCCCCCccccccccccccccccCC
Q 041082 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404 (639)
Q Consensus 373 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N 404 (639)
++|++++|+-...+|..+..++.|+.++++++
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 66666654333345555555666666665544
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-24 Score=205.51 Aligned_cols=277 Identities=25% Similarity=0.246 Sum_probs=173.1
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEec
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..+.|+|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|++|.++..|.+|-+.+ |+|+......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 356677777777766666777777777777777777777777777777776666555 6666555556777777777777
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc--------
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF-------- 203 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-------- 203 (639)
.-|++.-+..+.|..+++|..|.|..|.+..+ --..|..+..++.+.+..|.+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i------------------~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSI------------------CKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhh------------------ccccccchhccchHhhhcCccccccccchh
Confidence 77777666666667766666666666655432 2224445555555555555431
Q ss_pred ----ccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccc-hhhcCCCCCCE
Q 041082 204 ----DLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL-EEISNLTNLTA 278 (639)
Q Consensus 204 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~ 278 (639)
...|..++......-..+.++++....+.-. . .+++ .+..-..+.+...+..| ..|..+++|+.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-~------c~~e----sl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF-L------CSLE----SLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhh-h------hhHH----hHHHhhccccCcCCcChHHHHhhcccceE
Confidence 1112222222222222333333322211100 0 0000 01000112222333333 24778888888
Q ss_pred EECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcC
Q 041082 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358 (639)
Q Consensus 279 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 358 (639)
|+|++|++++.-+.+|..+.+++.|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|.+
T Consensus 279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88888888888888888888888888888888877777888888888888888888888888888888888888776654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=222.00 Aligned_cols=315 Identities=22% Similarity=0.260 Sum_probs=249.9
Q ss_pred CcCCCCCCCCCEEeccCCc------CCccCCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccC
Q 041082 69 PSELGNLSSLQTLDLSFNW------FSGSIPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIH 141 (639)
Q Consensus 69 p~~l~~l~~L~~L~Ls~N~------l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 141 (639)
+..|.++++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..| ...+|+.|+|.+|++. .+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4568999999999997653 3445788887775 6999999998874 667777 5789999999999997 577
Q ss_pred ccccCCCCCCEEecCCCC-CCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 142 SSIFNLSSLSDLDLSHNN-LTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 142 ~~~~~l~~L~~L~Ls~N~-l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
..+..+++|+.|+|+++. ++.+ .+++|+.|+|++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 788999999999999764 4443 36899999999998888899999999999999999987666777655 79999
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC-------Ccc
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL-------NGS 289 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~ 289 (639)
+.|++++|......|. ...+++.|++++|.+.. +|..+ .+++|+.|.+.++.. ...
T Consensus 707 ~~L~Lsgc~~L~~~p~---------------~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---------------ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CEEeCCCCCCcccccc---------------ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhcccccccc
Confidence 9999998854332221 13478889999988754 55544 578888888877432 212
Q ss_pred ccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcC
Q 041082 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNL 369 (639)
Q Consensus 290 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 369 (639)
.|..+...++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence 22233345789999999999888899999999999999999986666778766 7899999999998766666653 3
Q ss_pred CCCcEEEcccCCCCCCCccccccccccccccccC-CCCCCc
Q 041082 370 KDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSM-NNFSGF 409 (639)
Q Consensus 370 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~-N~l~g~ 409 (639)
.+|+.|++++|.+. .+|..+..+++|+.|++++ |++..+
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence 67899999999986 5788999999999999998 556543
|
syringae 6; Provisional |
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-22 Score=212.10 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=153.6
Q ss_pred CcCcceEEEecC------CceeeeEEechhhhh-hhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 408 GFGSIYKARIQD------GMKVAVKVFDLQYER-AFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 408 g~g~vy~~~l~~------g~~vavK~l~~~~~~-~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.||.||++...+ -+.||||.+...... ...+|.+|.+++.. +|+|||..|+|.
T Consensus 498 aFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~ 577 (774)
T KOG1026|consen 498 AFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLH 577 (774)
T ss_pred hhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHH
Confidence 389999988654 378999999765544 78899999998653 689999999999
Q ss_pred hcccc---------CC----ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 461 KCLYS---------SN----YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 461 ~~l~~---------~~----~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++|.. +. ..|+-.+.+.||.|||.||+||- +...|||||-++|+|+.+.+.+||+||||+|-.-
T Consensus 578 eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiY 654 (774)
T KOG1026|consen 578 EFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGENLVVKISDFGLSRDIY 654 (774)
T ss_pred HHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccceEEEecccccchhhh
Confidence 99864 11 13788899999999999999999 7789999999999999999999999999999765
Q ss_pred ccCCCc-c-cc----cccc-ccccccCCCCCCCccCCCccchHHHHHhhC-CCC---cceeeeccccccccccccchHHH
Q 041082 528 KEDQSF-T-QN----TNTC-HHRIYGTRRNPQMNFFSGEMTLKSWVNDLL-PIS---VMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 528 ~~~~~~-~-~~----~~~~-~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~-~~~---~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+.++.. . .. .-.. ++=.|| .....+|+|+.|+.|||-..... |.. -.|+++---.+ ...+.+++|
T Consensus 655 ssDYYk~~~~t~lPIRWMppEsIly~-kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g---~lL~~Pe~C 730 (774)
T KOG1026|consen 655 SSDYYKVRGNTLLPIRWMPPESILYG-KFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAG---QLLSCPENC 730 (774)
T ss_pred hhhhhcccCCceeeeecCCHHHhhcC-cccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcC---CcccCCCCC
Confidence 554321 0 00 0000 111121 00122344555666665443222 211 12232211111 113457889
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.++++|++.||++.|++||+++||-.+|+..-.+
T Consensus 731 P~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~ 765 (774)
T KOG1026|consen 731 PTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA 765 (774)
T ss_pred CHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999977544
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=217.50 Aligned_cols=217 Identities=25% Similarity=0.344 Sum_probs=152.2
Q ss_pred cCcceEEEecC--C----ceeeeEEechhh-hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchh
Q 041082 409 FGSIYKARIQD--G----MKVAVKVFDLQY-ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 409 ~g~vy~~~l~~--g----~~vavK~l~~~~-~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~ 461 (639)
||.||.|.+.+ | ..||+|.+.... .+....|-.|...|+. ++.|||++|+|..
T Consensus 705 FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~s 784 (1025)
T KOG1095|consen 705 FGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLS 784 (1025)
T ss_pred ccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHH
Confidence 89999999864 3 348888875443 3445677777766543 6789999999999
Q ss_pred ccccC------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc
Q 041082 462 CLYSS------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535 (639)
Q Consensus 462 ~l~~~------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~ 535 (639)
+|++. ...++....+.+|.|||+|+.||+ ..+.|||||.++|+||++...|||+||||||.+...++....
T Consensus 785 flr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~ 861 (1025)
T KOG1095|consen 785 FLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKH 861 (1025)
T ss_pred HHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheecc
Confidence 99875 456888889999999999999999 788999999999999999999999999999955443322111
Q ss_pred cccccccccc-c-----C-CCCCCCccCCCccchHHHHHh-hCCCCc---ceeeeccccccccccccchHHHHHHHHHHH
Q 041082 536 NTNTCHHRIY-G-----T-RRNPQMNFFSGEMTLKSWVND-LLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604 (639)
Q Consensus 536 ~~~~~~~dvy-G-----t-g~~p~~~~~~~~~~l~~~~~~-~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~ 604 (639)
..... .--| - + ...-+.|+|+.|+-|||.... ..|... .+++..-+.+ .+.+.+..|..++++|+
T Consensus 862 ~~a~l-PvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~g---gRL~~P~~CP~~ly~lM 937 (1025)
T KOG1095|consen 862 GEAML-PVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEG---GRLDPPSYCPEKLYQLM 937 (1025)
T ss_pred Ccccc-ceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhC---CccCCCCCCChHHHHHH
Confidence 00000 0000 0 0 001233455666666665533 334331 2222211111 14455778999999999
Q ss_pred hhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 605 MECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 605 ~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..||+.+|++||++..++++++.+....
T Consensus 938 ~~CW~~~pe~RP~F~~i~~q~~~i~~~~ 965 (1025)
T KOG1095|consen 938 LQCWKHDPEDRPSFRTIVEQDPAISNAA 965 (1025)
T ss_pred HHHccCChhhCccHHHHHhhhhhhhhhh
Confidence 9999999999999999999998886653
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=204.19 Aligned_cols=314 Identities=21% Similarity=0.315 Sum_probs=145.1
Q ss_pred ChhHHHHHHHHHhcCCCCCCc--ccccCCCCCCCCcCccc----------------eecCCCCCcEEEEEeCCCCCcccC
Q 041082 7 NNHLSFQVFVLKGHVTDDPTN--FLAKNWNTSSTVCHWTG----------------VSCDVRSYRVTTLNISGLSLTSTI 68 (639)
Q Consensus 7 ~~~~~~~ll~~k~~~~~~~~~--~l~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l~~~~ 68 (639)
...+.+.+++..+.+ ..|.- ....+|...+++|.-.. |.|.. ..|+.+.+-+.......
T Consensus 61 ~~~~~~~~~~~~~~l-~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~~~~ 137 (754)
T PRK15370 61 SPEEIKSKFECLRML-AFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQASSA 137 (754)
T ss_pred CHHHHHHHHHHHHHh-cCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--CcccccccccccccccC
Confidence 345666777777766 35531 12234888888885332 66754 46777766654221110
Q ss_pred --CcCC-------------------------------CCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC
Q 041082 69 --PSEL-------------------------------GNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115 (639)
Q Consensus 69 --p~~l-------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 115 (639)
+... +--.+...|+++++.++ .+|..+. +.|+.|+|++|+++.
T Consensus 138 ~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts- 213 (754)
T PRK15370 138 SGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS- 213 (754)
T ss_pred CCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-
Confidence 0000 01123455555555555 3444432 345555555555552
Q ss_pred CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEE
Q 041082 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSIL 195 (639)
Q Consensus 116 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 195 (639)
+|..+. ++|++|+|++|+++ .+|..+. .+|+.|+|++|.++. +|..+. ++|+.|
T Consensus 214 LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-------------------LP~~l~--s~L~~L 267 (754)
T PRK15370 214 LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-------------------LPERLP--SALQSL 267 (754)
T ss_pred CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-------------------CChhHh--CCCCEE
Confidence 333332 35555555555555 2333322 245555555555543 333322 244555
Q ss_pred EcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCC
Q 041082 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTN 275 (639)
Q Consensus 196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~ 275 (639)
++++|++.. +|..+. ++|+.|++++|+++..+..+ ..+++.|++++|.++. +|..+ .++
T Consensus 268 ~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l---------------p~sL~~L~Ls~N~Lt~-LP~~l--~~s 326 (754)
T PRK15370 268 DLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHL---------------PSGITHLNVQSNSLTA-LPETL--PPG 326 (754)
T ss_pred ECcCCccCc-cccccC--CCCcEEECCCCccccCcccc---------------hhhHHHHHhcCCcccc-CCccc--ccc
Confidence 555554443 233221 24555555555544332110 0123334444444442 22222 134
Q ss_pred CCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCC
Q 041082 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355 (639)
Q Consensus 276 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 355 (639)
|+.|++++|.+++ +|..+. ++|+.|++++|++.. +|..+ .++|+.|++++|.++. +|..+. .+|+.|++++
T Consensus 327 L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 327 LKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASR 397 (754)
T ss_pred ceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhcc
Confidence 5555555555553 343332 455555555555542 33333 2355566666665553 333332 2455556666
Q ss_pred CcCccc---chhhhhcCCCCcEEEcccCCCC
Q 041082 356 NKLISI---IPSTLWNLKDILYLNLSSNFFI 383 (639)
Q Consensus 356 N~l~~~---~p~~~~~l~~L~~L~ls~N~l~ 383 (639)
|++... +|..+..++.+..+++.+|++.
T Consensus 398 N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 398 NNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 655532 1222233355556666666553
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=189.93 Aligned_cols=201 Identities=21% Similarity=0.227 Sum_probs=140.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh---hhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA---FKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~---~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
++++.||++.. +|..+|+|.+....... ...|..|+..++ .+|+||+++|+|
T Consensus 31 g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L 109 (283)
T PHA02988 31 NDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYL 109 (283)
T ss_pred CCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcH
Confidence 46788999988 57899999986543222 345666666532 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
.+++... ..++|..+.+++.+++.|++|+|.. ..++||||||+||++++++.+|++|||+++.+.......
T Consensus 110 ~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y 186 (283)
T PHA02988 110 REVLDKE-KDLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVY 186 (283)
T ss_pred HHHHhhC-CCCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccc
Confidence 9998753 4689999999999999999999942 356799999999999999999999999998654322110
Q ss_pred --cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 --TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 --~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+. ...+.++||| | ||+.|..+. .-.++.......... +. .+..+
T Consensus 187 ~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~-----~~~~~~~~i~~~~~~----~~----------~~~~~ 247 (283)
T PHA02988 187 FSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENL-----TTKEIYDLIINKNNS----LK----------LPLDC 247 (283)
T ss_pred cCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhcCCC----CC----------CCCcC
Confidence 00 1123377887 6 777776532 111111111111000 00 01123
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
...+.+++.+||+.+|++||||.||++.|+.++.
T Consensus 248 ~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~ 281 (283)
T PHA02988 248 PLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF 281 (283)
T ss_pred cHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence 3457788999999999999999999999987753
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-20 Score=193.17 Aligned_cols=202 Identities=21% Similarity=0.325 Sum_probs=133.0
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+.++. .+++||+++|
T Consensus 18 G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g 97 (338)
T cd05102 18 GAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYG 97 (338)
T ss_pred CCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCC
Confidence 56899999864 2346899999864321 22234555554432 2578999999
Q ss_pred CchhccccC-------------------------------------------------------------CccCCHHHHH
Q 041082 458 SLEKCLYSS-------------------------------------------------------------NYILDIFQRL 476 (639)
Q Consensus 458 sL~~~l~~~-------------------------------------------------------------~~~l~~~~~~ 476 (639)
+|.+++... ...++|....
T Consensus 98 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (338)
T cd05102 98 NLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLI 177 (338)
T ss_pred cHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHH
Confidence 998877531 1247888899
Q ss_pred HHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------------cc----cccc
Q 041082 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------------TQ----NTNT 539 (639)
Q Consensus 477 ~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------------~~----~~~~ 539 (639)
+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......... +. ...+
T Consensus 178 ~~~~qi~~aL~~LH---~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~ 254 (338)
T cd05102 178 CYSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYT 254 (338)
T ss_pred HHHHHHHHHHHHHH---HCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCC
Confidence 99999999999999 6789999999999999999999999999998653321100 00 0112
Q ss_pred cccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccC
Q 041082 540 CHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTA 609 (639)
Q Consensus 540 ~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~ 609 (639)
.++||| | | |+.|....... ..+..... .. .. ...+..+...+.+++.+|++
T Consensus 255 ~~sDiwslG~il~el~~~g~~pf~~~~~~----~~~~~~~~-~~-------~~-------~~~~~~~~~~l~~li~~cl~ 315 (338)
T cd05102 255 TQSDVWSFGVLLWEIFSLGASPYPGVQIN----EEFCQRLK-DG-------TR-------MRAPENATPEIYRIMLACWQ 315 (338)
T ss_pred cccCHHHHHHHHHHHHhCCCCCCCCCCcc----HHHHHHHh-cC-------CC-------CCCCCCCCHHHHHHHHHHcc
Confidence 356666 4 2 55554321100 01111000 00 00 00112233457789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhHH
Q 041082 610 ESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 610 ~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+|++||+|.||+++|+++.+
T Consensus 316 ~dp~~RPs~~el~~~l~~~~~ 336 (338)
T cd05102 316 GDPKERPTFSALVEILGDLLQ 336 (338)
T ss_pred CChhhCcCHHHHHHHHHHHHh
Confidence 999999999999999997754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-21 Score=199.36 Aligned_cols=198 Identities=22% Similarity=0.457 Sum_probs=152.1
Q ss_pred cCcceEEEecC----CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 409 FGSIYKARIQD----GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 409 ~g~vy~~~l~~----g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
||.|++|.+.- ...||+|.+...+. +...+|..|..+|. ++|.|||+||+|..+|
T Consensus 642 FGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFL 721 (996)
T KOG0196|consen 642 FGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFL 721 (996)
T ss_pred ccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHH
Confidence 89999999852 37899999988774 45678888887753 2678999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-cccc------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQN------ 536 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~~------ 536 (639)
+..+..++|.|.+.+..|||.||.||- ..+.|||||-++|||++.+..+||+|||++|.+.++... .+..
T Consensus 722 R~~DGqftviQLVgMLrGIAsGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPi 798 (996)
T KOG0196|consen 722 RQNDGQFTVIQLVGMLRGIASGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPI 798 (996)
T ss_pred hhcCCceEeehHHHHHHHHHHHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccce
Confidence 987777999999999999999999999 778999999999999999999999999999988665421 0000
Q ss_pred -----------ccccccccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 537 -----------TNTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 537 -----------~~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
.-|..+||| | -|.+|+.++- .++ +...|+ .+++...+.+
T Consensus 799 RWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmS--NQd------------VIkaIe------~gyRLPpPmD 858 (996)
T KOG0196|consen 799 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS--NQD------------VIKAIE------QGYRLPPPMD 858 (996)
T ss_pred eecChhHhhhcccCchhhccccceEEEEecccCCCcccccc--hHH------------HHHHHH------hccCCCCCCC
Confidence 111256776 5 4556654321 000 111111 1223344678
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
|...+.+||+.||+.+=.+||++.||+..|.++-
T Consensus 859 CP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklI 892 (996)
T KOG0196|consen 859 CPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLI 892 (996)
T ss_pred CcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-21 Score=195.01 Aligned_cols=216 Identities=21% Similarity=0.328 Sum_probs=155.9
Q ss_pred CCCCC--cCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 404 NNFSG--FGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 404 N~l~g--~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
+.+.| +|.||.|.|. ..-.||||.+..+... ..+|..|..+|+. +|.|||..|+|-
T Consensus 273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe-veEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLL 351 (1157)
T KOG4278|consen 273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLL 351 (1157)
T ss_pred eccCCCcccceeeeeeeccceeeehhhhhhcchh-HHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHH
Confidence 44444 8899999985 3578999998765443 4577777766552 578999999999
Q ss_pred hccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccccc
Q 041082 461 KCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539 (639)
Q Consensus 461 ~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~ 539 (639)
++|++.. ..+.-.-.+.+|.||+.||+||. ....|||||-++|.|+.++..+||+|||++|++..+.+.. .++.
T Consensus 352 dYLRecnr~ev~avvLlyMAtQIsSaMeYLE---kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTA--HAGA 426 (1157)
T KOG4278|consen 352 DYLRECNRSEVPAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTA--HAGA 426 (1157)
T ss_pred HHHHHhchhhcchhHHHHHHHHHHHHHHHHH---HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceec--ccCc
Confidence 9998733 34566667899999999999999 7889999999999999999999999999999998876531 1111
Q ss_pred c--------ccccccCCCCCCCccCCCccchHHHHHh-hCCCCc---ceeeeccccccccccccchHHHHHHHHHHHhhc
Q 041082 540 C--------HHRIYGTRRNPQMNFFSGEMTLKSWVND-LLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607 (639)
Q Consensus 540 ~--------~~dvyGtg~~p~~~~~~~~~~l~~~~~~-~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C 607 (639)
. ++-.| -..+-..|+|..|+-||+.++. +.|... ..+.+- . +-+++++.++.|..+|++|++.|
T Consensus 427 KFPIKWTAPEsLAy-NtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~L--L-EkgyRM~~PeGCPpkVYeLMraC 502 (1157)
T KOG4278|consen 427 KFPIKWTAPESLAY-NTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGL--L-EKGYRMDGPEGCPPKVYELMRAC 502 (1157)
T ss_pred cCcccccCcccccc-cccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHH--H-hccccccCCCCCCHHHHHHHHHH
Confidence 0 11111 1112233444556666666643 333321 111111 0 12346677889999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhH
Q 041082 608 TAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 608 ~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
|+++|++||+++|+-+.++.+-
T Consensus 503 W~WsPsDRPsFaeiHqafEtmf 524 (1157)
T KOG4278|consen 503 WNWSPSDRPSFAEIHQAFETMF 524 (1157)
T ss_pred hcCCcccCccHHHHHHHHHHHh
Confidence 9999999999999999998764
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=187.46 Aligned_cols=195 Identities=31% Similarity=0.493 Sum_probs=133.4
Q ss_pred CcCcceEEEec-----CCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchh
Q 041082 408 GFGSIYKARIQ-----DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 408 g~g~vy~~~l~-----~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~ 461 (639)
.||.||++.+. .+..|+||.+..... .....|..+++.++. +|+||+++|+|.+
T Consensus 11 ~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~ 90 (259)
T PF07714_consen 11 SFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDD 90 (259)
T ss_dssp SSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHH
T ss_pred CCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 47899999987 257899999955332 235677777766432 6899999999999
Q ss_pred ccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------c
Q 041082 462 CLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------F 533 (639)
Q Consensus 462 ~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~ 533 (639)
+++.. ...++|.++.+|+.+||+||+||| ..+++||+|+++||++++++.+||+|||+++........ .
T Consensus 91 ~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~ 167 (259)
T PF07714_consen 91 YLKSKNKEPLSEQQRLSIAIQIAEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQL 167 (259)
T ss_dssp HHHHTCTTTSBHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSES
T ss_pred cccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99875 567999999999999999999999 557999999999999999999999999999876321110 0
Q ss_pred ------c----ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 ------T----QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ------~----~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+ ....+.++||| | | |+.|..+. .-.++......... ...+
T Consensus 168 ~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~-----~~~~~~~~~~~~~~---------------~~~~ 227 (259)
T PF07714_consen 168 PLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY-----DNEEIIEKLKQGQR---------------LPIP 227 (259)
T ss_dssp GGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS-----CHHHHHHHHHTTEE---------------TTSB
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccc---------------ceec
Confidence 0 01123478888 6 5 45554321 22222222211110 0111
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
..+...+.+++.+||+.+|++||+|.+++++|
T Consensus 228 ~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 228 DNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 22344677899999999999999999999876
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=191.41 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=142.8
Q ss_pred CcCcceEEEecCC----ce-eeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 408 GFGSIYKARIQDG----MK-VAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 408 g~g~vy~~~l~~g----~~-vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.||.||+|.+... .. ||+|....+. ......|-.|.+.|+. +|+|++.+|+|
T Consensus 169 aFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL 248 (474)
T KOG0194|consen 169 AFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSL 248 (474)
T ss_pred cccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcH
Confidence 4899999998543 22 8999877522 4456678788877653 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
.++|......++..++++++.++|+||+||| +..++||||-++|+|++.+..+||+|||+++.-..-....
T Consensus 249 ~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klP 325 (474)
T KOG0194|consen 249 DDYLKKNKKSLPTLEKLRFCYDAARGLEYLH---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLP 325 (474)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhHHHHHH---HCCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCc
Confidence 9999876557999999999999999999999 7889999999999999999999999999998653111100
Q ss_pred -----cc----cccccccccc--c--------CCCCCCCccCCCccchHHHH-HhhCCCCcceeeeccccccccccccch
Q 041082 534 -----TQ----NTNTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWV-NDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ..-+.+.||| | .|..|+... ....+..|+ ....+. ..+
T Consensus 326 irWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~--~~~~v~~kI~~~~~r~------------------~~~ 385 (474)
T KOG0194|consen 326 IRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGM--KNYEVKAKIVKNGYRM------------------PIP 385 (474)
T ss_pred ceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCC--CHHHHHHHHHhcCccC------------------CCC
Confidence 00 1223478887 6 355555421 111222232 111111 111
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
......+..++.+||..+|++||+|.+|++.++.+...
T Consensus 386 ~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~ 423 (474)
T KOG0194|consen 386 SKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKK 423 (474)
T ss_pred CCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhc
Confidence 12233455566699999999999999999999988654
|
|
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-20 Score=185.46 Aligned_cols=214 Identities=23% Similarity=0.378 Sum_probs=138.1
Q ss_pred CCcCcceEEEec-----CCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-----DGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-----~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+++|.+........+.+..|++.++ .+|+||+++|+|
T Consensus 15 g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L 94 (284)
T cd05081 15 GNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSL 94 (284)
T ss_pred CCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCH
Confidence 468899988742 46789999987655444556666665532 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ-- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~-- 535 (639)
.+++......++|.++..++.+++.||+||| ..+++||||||+||++++++.+|++|||+++......... ..
T Consensus 95 ~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 171 (284)
T cd05081 95 RDYLQKHRERLDHRKLLLYASQICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPG 171 (284)
T ss_pred HHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCC
Confidence 9998765556899999999999999999999 6789999999999999999999999999998764322110 00
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccc--cccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLS--MEDKYF 590 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~--~~~~~~ 590 (639)
...+.++|+| | +|..+..... ..|................+.. ......
T Consensus 172 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (284)
T cd05081 172 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP------AEFMRMMGNDKQGQMIVYHLIELLKNNGRL 245 (284)
T ss_pred CCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc------hhhhhhcccccccccchHHHHHHHhcCCcC
Confidence 0112245666 4 3332221100 0011100000000000000000 000000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.....+...+.+++.+|++.+|++||||.||+++|+.++
T Consensus 246 ~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~ 284 (284)
T cd05081 246 PAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR 284 (284)
T ss_pred CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence 011223456888999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=188.43 Aligned_cols=217 Identities=19% Similarity=0.281 Sum_probs=149.3
Q ss_pred cCcceEEEecCCceeeeEEechhhhh-hhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccCC
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYER-AFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~~ 467 (639)
||.|..+...++..||||.++...+. ...+|..|++.+.. +|+|||++|+|.+++.++.
T Consensus 551 FGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~ahe 630 (807)
T KOG1094|consen 551 FGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHE 630 (807)
T ss_pred cceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhcc
Confidence 78888888888899999999766543 35788888888532 6899999999999887643
Q ss_pred -ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc--ccccccccc
Q 041082 468 -YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ--NTNTCHHRI 544 (639)
Q Consensus 468 -~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~--~~~~~~~dv 544 (639)
...+-.+.++||.|||.||+||. +.++||||+.++|+|+|+++++||+|||++|-+-+.++.... .+-..++-.
T Consensus 631 apt~~t~~~vsi~tqiasgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwma 707 (807)
T KOG1094|consen 631 LPTAETAPGVSICTQIASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMA 707 (807)
T ss_pred CcccccchhHHHHHHHHHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehh
Confidence 22455667889999999999999 788999999999999999999999999999977665543111 000001111
Q ss_pred c-c--CCC-CCCCccCCCccchHHHHHhhCCCCcceeeecccc-------cc--ccccccchHHHHHHHHHHHhhccCCC
Q 041082 545 Y-G--TRR-NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL-------SM--EDKYFTTKKQCLSFVFNLAMECTAES 611 (639)
Q Consensus 545 y-G--tg~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~-------~~--~~~~~~~~~~~~~~~~~l~~~C~~~~ 611 (639)
| . -|| .-.+|++..|+.+|+.........-.++-|..+. .. .......+..|...+++++++||..+
T Consensus 708 wEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~e 787 (807)
T KOG1094|consen 708 WESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRE 787 (807)
T ss_pred HHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchh
Confidence 1 0 111 1223344455556555433332211111111110 00 01123446778999999999999999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 041082 612 PKQRINAKESVTRLLKI 628 (639)
Q Consensus 612 p~~RP~m~~v~~~l~~~ 628 (639)
.++||++.++...|++.
T Consensus 788 s~~RPsFe~lh~~lq~~ 804 (807)
T KOG1094|consen 788 SEQRPSFEQLHLFLQED 804 (807)
T ss_pred hhcCCCHHHHHHHHHHh
Confidence 99999999999988764
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-20 Score=186.62 Aligned_cols=119 Identities=26% Similarity=0.370 Sum_probs=95.0
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhhhhhhh-HHHHHHHH----------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYERAFKS-FDVACDMM----------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~-f~~e~~~~----------------------~~Lv~ey~~~gsL~~~ 462 (639)
..||.||++. ...|..||||++.......... -.+|+..+ -++|+|||+- +|+++
T Consensus 21 GTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqL 99 (538)
T KOG0661|consen 21 GTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQL 99 (538)
T ss_pred CcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHH
Confidence 3489999998 4568899999876443221110 01222221 1378999986 89999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
+.+..+.++.....+|+.||.+||+|+| ..++.|||+||+|||+.....+||+|||+||-+.+.
T Consensus 100 mK~R~r~fse~~irnim~QilqGL~hiH---k~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk 163 (538)
T KOG0661|consen 100 MKDRNRLFSESDIRNIMYQILQGLAHIH---KHGFFHRDLKPENILISGNDVIKIADFGLAREVRSK 163 (538)
T ss_pred HhhcCCcCCHHHHHHHHHHHHHHHHHHH---hcCcccccCChhheEecccceeEecccccccccccC
Confidence 9888888999999999999999999999 889999999999999999999999999999987654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-20 Score=203.31 Aligned_cols=165 Identities=30% Similarity=0.406 Sum_probs=117.1
Q ss_pred eecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCC
Q 041082 45 VSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLA 124 (639)
Q Consensus 45 v~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 124 (639)
..|-. .+.+.|++++++++. +|..+. ++|+.|+|++|.++ .+|..+. ++|+.|++++|+++ .+|..+. +
T Consensus 173 ~~Cl~--~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 173 RDCLK--NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred Hhhcc--cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--c
Confidence 35643 357889999999984 676665 58999999999999 5787665 58999999999998 4676654 4
Q ss_pred CCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC---CCCccEEEccCCccCccCCccccCCCCCcEEEcccCC
Q 041082 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201 (639)
Q Consensus 125 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 201 (639)
+|+.|+|++|++. .+|..+. .+|+.|+|++|+|+.++ .++|+.|+|++|++++ +|..+. ++|+.|++++|.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence 7999999999998 5676654 47888888888887643 2367777777777764 343322 356666666666
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 202 FFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+..+ |..+ .++|+.|++++|.+++.
T Consensus 316 Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 316 LTAL-PETL--PPGLKTLEAGENALTSL 340 (754)
T ss_pred cccC-Cccc--cccceeccccCCccccC
Confidence 6543 3222 24566666666666543
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-20 Score=186.66 Aligned_cols=204 Identities=21% Similarity=0.326 Sum_probs=132.1
Q ss_pred CCcCcceEEEecC-----------------CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------h
Q 041082 407 SGFGSIYKARIQD-----------------GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------K 448 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----------------g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~ 448 (639)
.++|.||++...+ +..+|+|.+..... .....|..|++.++ .
T Consensus 16 G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (304)
T cd05096 16 GQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLC 95 (304)
T ss_pred cCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCceE
Confidence 5688999887532 34699998865422 23446667776643 3
Q ss_pred hhhhcCCCCCchhccccC------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec
Q 041082 449 LVLEYMPHGSLEKCLYSS------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~ 510 (639)
+|+||+++|+|.+++... ...++|....+++.++|+||+||| ..+|+||||||+||+++
T Consensus 96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH~dlkp~Nill~ 172 (304)
T cd05096 96 MITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLS---SLNFVHRDLATRNCLVG 172 (304)
T ss_pred EEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccCcchhheEEc
Confidence 689999999999877431 124788899999999999999999 66799999999999999
Q ss_pred CCcceeeccccccccccccCCC---c----------cc----cccccccccc--c---------CCCCCCCccCCCccch
Q 041082 511 NNMVAHLSDFGMAKLLLKEDQS---F----------TQ----NTNTCHHRIY--G---------TRRNPQMNFFSGEMTL 562 (639)
Q Consensus 511 ~~~~~~i~dfgla~~~~~~~~~---~----------~~----~~~~~~~dvy--G---------tg~~p~~~~~~~~~~l 562 (639)
.++.+||+|||+++.+...... . +. ...+.++||| | ++..|.... .....
T Consensus 173 ~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~--~~~~~ 250 (304)
T cd05096 173 ENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGEL--TDEQV 250 (304)
T ss_pred CCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcC--CHHHH
Confidence 9999999999999865332210 0 00 0112255666 4 133333211 01111
Q ss_pred HHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 563 KSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 563 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.+++............. ..+..+...+.+++.+|++.+|++||+|.||++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 251 IENAGEFFRDQGRQVYL-----------FRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred HHHHHHHhhhccccccc-----------cCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 12221111111000000 011223456788999999999999999999998886
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-20 Score=183.82 Aligned_cols=118 Identities=34% Similarity=0.455 Sum_probs=98.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.+||.||||.+.+ +.||||++.....+ +|..|.++.+ -||.+|.++|||.
T Consensus 221 Grfg~V~KaqL~~-~~VAVKifp~~~kq---s~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~ 296 (534)
T KOG3653|consen 221 GRFGCVWKAQLDN-RLVAVKIFPEQEKQ---SFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLC 296 (534)
T ss_pred CccceeehhhccC-ceeEEEecCHHHHH---HHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHH
Confidence 4689999999974 89999999865443 4444444411 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhc------cCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHF------GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~------~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
++|.. ..++|....+||.-+|+||+|||+ +..|+|+|||||++|||+..|+.+.|+|||||..+..+.
T Consensus 297 dyL~~--ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~ 370 (534)
T KOG3653|consen 297 DYLKA--NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGK 370 (534)
T ss_pred HHHHh--ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCC
Confidence 99964 568999999999999999999995 446899999999999999999999999999998876543
|
|
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=187.41 Aligned_cols=201 Identities=22% Similarity=0.337 Sum_probs=136.2
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+. .+|+|.+.... ......+..|+..++ .++++|+++|+|.+
T Consensus 18 G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~e~~~~g~l~~ 97 (316)
T cd05108 18 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 97 (316)
T ss_pred CCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeeeecCCCCCHHH
Confidence 458899999864 333 38999886432 223345555655533 26789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++......+++....+++.++|+||+||| +.+|+||||||+||+++.++.+||+|||+++.+.........
T Consensus 98 ~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~ 174 (316)
T cd05108 98 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVP 174 (316)
T ss_pred HHHhccccCCHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccc
Confidence 98765556899999999999999999999 678999999999999999999999999999876533211000
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.++. ...++.... .. .. ....+.
T Consensus 175 ~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~-----~~~~~~~~~-~~--------~~------~~~~~~ 234 (316)
T cd05108 175 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI-----PASEISSIL-EK--------GE------RLPQPP 234 (316)
T ss_pred eeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHHH-hC--------CC------CCCCCC
Confidence 0111245665 4 3 44444321 111111000 00 00 001112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+...+.+++..|++.+|++||+|.+++..+..+..
T Consensus 235 ~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~ 270 (316)
T cd05108 235 ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 270 (316)
T ss_pred CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence 234567889999999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=178.23 Aligned_cols=207 Identities=26% Similarity=0.328 Sum_probs=145.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL~ 460 (639)
..||.||+|.++ |..||||+|....+. ++.+|.++. -.||.+|-++|||+
T Consensus 222 GRyGEVwrG~wr-Ge~VAVKiF~srdE~---SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~ 297 (513)
T KOG2052|consen 222 GRFGEVWRGRWR-GEDVAVKIFSSRDER---SWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLY 297 (513)
T ss_pred ccccceeecccc-CCceEEEEecccchh---hhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHH
Confidence 358999999998 568999999754433 333333331 12789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhc-----cCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHF-----GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~-----~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
++|.. ..++-..-+++|.-+|.||++||. ...|.|.||||||.|||+.+++.+.|+|+|||....++....
T Consensus 298 DyL~r--~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi 375 (513)
T KOG2052|consen 298 DYLNR--NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDI 375 (513)
T ss_pred HHHhh--ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccC
Confidence 99965 568999999999999999999994 557999999999999999999999999999997654432210
Q ss_pred --ccccccc---------------------ccccccCCCCCCCccCCCccchHHHHHhhC----------------CC--
Q 041082 534 --TQNTNTC---------------------HHRIYGTRRNPQMNFFSGEMTLKSWVNDLL----------------PI-- 572 (639)
Q Consensus 534 --~~~~~~~---------------------~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~----------------~~-- 572 (639)
...++|. .+||| +.|..+|+-++... |.
T Consensus 376 ~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIY-----------afgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DP 444 (513)
T KOG2052|consen 376 PPNPRVGTKRYMAPEVLDETINMKHFESYKRADIY-----------AFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDP 444 (513)
T ss_pred CCCCccceeeccChHHhhhhcChhhhhhhhHHHHH-----------HHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCC
Confidence 0111111 45666 22222222222211 11
Q ss_pred ---CcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 573 ---SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 573 ---~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
++.++|-.+-..+...+.+...+++..+.+++..||..+|+.|-|+-.|-+.|.++..
T Consensus 445 s~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~ 505 (513)
T KOG2052|consen 445 SFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN 505 (513)
T ss_pred CHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence 1233332222222222344557889999999999999999999999999999988854
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=188.45 Aligned_cols=200 Identities=20% Similarity=0.296 Sum_probs=132.1
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.+||.||++.. ..+..+|||++.... ......+..|+.+++ .+||||+++|+
T Consensus 46 G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~ 125 (375)
T cd05104 46 GAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCCYGD 125 (375)
T ss_pred CccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhccCCc
Confidence 46899999864 235689999986432 122334555665532 36899999999
Q ss_pred chhccccC------------------------------------------------------------------------
Q 041082 459 LEKCLYSS------------------------------------------------------------------------ 466 (639)
Q Consensus 459 L~~~l~~~------------------------------------------------------------------------ 466 (639)
|.+++...
T Consensus 126 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (375)
T cd05104 126 LLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILE 205 (375)
T ss_pred HHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHh
Confidence 98877531
Q ss_pred --CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c-------
Q 041082 467 --NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T------- 534 (639)
Q Consensus 467 --~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~------- 534 (639)
...++|....+++.++|+||+||| ..+|+||||||.||+++.+..+|++|||+++......... .
T Consensus 206 ~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y 282 (375)
T cd05104 206 EDELALDTEDLLSFSYQVAKGMSFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKW 282 (375)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcce
Confidence 124789999999999999999999 6789999999999999999999999999998654322110 0
Q ss_pred -------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | | |..|..... .......++..... . ..+....
T Consensus 283 ~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~-~~~~~~~~~~~~~~-----~-------------~~~~~~~ 343 (375)
T cd05104 283 MAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMP-VDSKFYKMIKEGYR-----M-------------LSPECAP 343 (375)
T ss_pred eChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC-chHHHHHHHHhCcc-----C-------------CCCCCCC
Confidence 00112256666 4 3 444443211 11111222111100 0 0011122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
..+.+++..|++.+|++||+|.||+++|++.
T Consensus 344 ~~l~~li~~cl~~dP~~RPs~~eil~~l~~~ 374 (375)
T cd05104 344 SEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374 (375)
T ss_pred HHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence 3577899999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=180.19 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=135.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+++|.+..... ....+..|+..++ .+||||+++|+|.++++..
T Consensus 15 G~~~~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~ 93 (256)
T cd05114 15 GQFGVVHLGKWRAQIKVAIKAINEGAM-SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQR 93 (256)
T ss_pred CcCceEEEEEeccCceEEEEecccCCc-cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhC
Confidence 568899999988888899998753322 2345556665533 2689999999999988754
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------------~ 534 (639)
...++|..+..++.+++.||+||| ..+++||||||+||++++++.+|++|||+++......... +
T Consensus 94 ~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aP 170 (256)
T cd05114 94 QGKLSKDMLLSMCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPP 170 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCCh
Confidence 446899999999999999999999 6789999999999999999999999999987653221110 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | | |+.|.... .......++.. .. ....+ ......+
T Consensus 171 E~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~--~~~~~~~~i~~---~~--~~~~~-------------~~~~~~~ 230 (256)
T cd05114 171 EVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK--SNYEVVEMISR---GF--RLYRP-------------KLASMTV 230 (256)
T ss_pred hhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHC---CC--CCCCC-------------CCCCHHH
Confidence 0 0112356777 5 4 55554321 11111122111 00 00011 1112357
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
.+++.+|++.+|++||+|.++++.|
T Consensus 231 ~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 231 YEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred HHHHHHHccCCcccCcCHHHHHHhh
Confidence 8899999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=165.69 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=140.1
Q ss_pred CcCcceEEEe-cCCceeeeEEechhhhhh--hhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQYERA--FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~~~~--~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+|.||++.- ..|+.||+|++....... -.+..+|++.++ .||+|||+. +|+..++
T Consensus 14 ~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~t-dLe~vIk 92 (318)
T KOG0659|consen 14 TYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMPT-DLEVVIK 92 (318)
T ss_pred ceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEeccc-cHHHHhc
Confidence 4788999974 568999999998764321 122334444422 268999986 8999998
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccc----
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC---- 540 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~---- 540 (639)
.+...+.-.+...++.++.+|++|+| ..-|+||||||.|+|++.++..|++|||+|+...+.....++.+.|.
T Consensus 93 d~~i~l~pa~iK~y~~m~LkGl~y~H---~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRA 169 (318)
T KOG0659|consen 93 DKNIILSPADIKSYMLMTLKGLAYCH---SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRA 169 (318)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHH---hhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccC
Confidence 87788999999999999999999999 67799999999999999999999999999999876543322212111
Q ss_pred ------------ccccc--c---------------------------CCCCCCCccCCCccchHHHHHhh-CCCCcceee
Q 041082 541 ------------HHRIY--G---------------------------TRRNPQMNFFSGEMTLKSWVNDL-LPISVMEVV 578 (639)
Q Consensus 541 ------------~~dvy--G---------------------------tg~~p~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 578 (639)
..|+| | +=..|..+.+.+-..|+++++.. +|....+.+
T Consensus 170 PELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~l 249 (318)
T KOG0659|consen 170 PELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNL 249 (318)
T ss_pred hHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccc
Confidence 34555 4 11124445555555566665443 333211111
Q ss_pred eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 579 DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 579 d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
...+...++++....+..+|.+|.+++|++++
T Consensus 250 --------------f~aas~d~ldLl~~m~~ynP~~Rita~qaL~~ 281 (318)
T KOG0659|consen 250 --------------FPAASSDALDLLSKMLTYNPKKRITASQALKH 281 (318)
T ss_pred --------------cccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence 11233445888889999999999999999864
|
|
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=180.69 Aligned_cols=199 Identities=23% Similarity=0.394 Sum_probs=140.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS- 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~- 465 (639)
.++|.||++...++..+++|.+..........+..++..++ .+|+||+++|+|.+++..
T Consensus 17 g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~ 96 (261)
T cd05148 17 GYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSP 96 (261)
T ss_pred CCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcC
Confidence 46889999998889999999987655444455666665532 268999999999999875
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----------- 534 (639)
....++|.++.+++.+++.|++||| ..+++|||||++||++++++.+|++|||++...........
T Consensus 97 ~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~P 173 (261)
T cd05148 97 EGQVLPVASLIDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAP 173 (261)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCH
Confidence 3356899999999999999999999 66799999999999999999999999999976643221100
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | + |+.|.... ......+++..... ...+..+...+
T Consensus 174 E~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 233 (261)
T cd05148 174 EAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM--NNHEVYDQITAGYR------------------MPCPAKCPQEI 233 (261)
T ss_pred HHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC--CHHHHHHHHHhCCc------------------CCCCCCCCHHH
Confidence 0 0112256777 5 4 55555321 11111111110000 00112334467
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+++.+|++.+|++||||.++++.|+.+
T Consensus 234 ~~~i~~~l~~~p~~Rpt~~~l~~~L~~~ 261 (261)
T cd05148 234 YKIMLECWAAEPEDRPSFKALREELDNI 261 (261)
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence 7899999999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=179.39 Aligned_cols=210 Identities=21% Similarity=0.368 Sum_probs=141.8
Q ss_pred CCcCcceEEEec-----CCceeeeEEechhhhh-hhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-----DGMKVAVKVFDLQYER-AFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-----~g~~vavK~l~~~~~~-~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
+++|.||++... .+..+|+|.+...... ....|..+++.++ .+++||+++|+
T Consensus 15 g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~ 94 (284)
T cd05038 15 GHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGS 94 (284)
T ss_pred CCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCC
Confidence 468899999864 3578999998755432 3456666665532 26789999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
|.+++......++|.++..++.+++.||+||| ..+++||||||+||+++.++.++++|||+++........
T Consensus 95 l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~ 171 (284)
T cd05038 95 LRDYLQRHRDQINLKRLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEP 171 (284)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCC
Confidence 99998765556999999999999999999999 668999999999999999999999999999876522110
Q ss_pred --------ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC----cceeeecccccccc
Q 041082 533 --------FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLLSMED 587 (639)
Q Consensus 533 --------~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~~~~~ 587 (639)
.+. ...+.++|+| | ||+.|.......... ++....... ..+.+.....
T Consensus 172 ~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---- 244 (284)
T cd05038 172 GESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLR---MIGIAQGQMIVTRLLELLKEGER---- 244 (284)
T ss_pred CCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcc---ccccccccccHHHHHHHHHcCCc----
Confidence 000 1122367888 6 677665432111100 000000000 0000000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
...+..+...+.+++.+|++.+|++||+|.||+++|+.+
T Consensus 245 --~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 245 --LPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred --CCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 011223446788999999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-21 Score=188.99 Aligned_cols=306 Identities=25% Similarity=0.240 Sum_probs=212.1
Q ss_pred EeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc-ccC
Q 041082 58 NISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN-NFL 136 (639)
Q Consensus 58 ~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l 136 (639)
+-++.+++ .+|..+. ..-..++|..|.|+...|.+|..+++|+.||||+|+|+.+-|+.|.++++|..|-+.+ |+|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34444555 4666555 3557888999999987778889999999999999999988899999999888877666 888
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
+....+.|++|..|+.|.+.-|++. ......|..+++|..|.+.+|.+..+.-..|..+..+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~------------------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHIN------------------CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAI 190 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhc------------------chhHHHHHHhhhcchhcccchhhhhhccccccchhcc
Confidence 8666667888777777666666554 4456677788888899999998876655688999999
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccccc-
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC- 295 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~- 295 (639)
+.+.+..|.+-.. .+++.+... +. ..|.+++...-..-..+.++++...-+.-|.
T Consensus 191 ~tlhlA~np~icd----------CnL~wla~~---~a-----------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 191 KTLHLAQNPFICD----------CNLPWLADD---LA-----------MNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chHhhhcCccccc----------cccchhhhH---Hh-----------hchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 9999988875432 111111100 00 0111222222222223333333322222221
Q ss_pred CCcCCcE-EEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcE
Q 041082 296 KLQKLQL-LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILY 374 (639)
Q Consensus 296 ~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 374 (639)
.+..+.. +....+.....+...|..+++|+.|+|++|+++++-+.+|.++..++.|.|..|++..+-...|.++..|+.
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 1112211 111122222233356888999999999999999888999999999999999999998888888889999999
Q ss_pred EEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 375 LNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 375 L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
|+|.+|+++...|..|..+..|..|++-.|+|-.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 9999999988889999999999999888888754
|
|
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=179.08 Aligned_cols=199 Identities=23% Similarity=0.372 Sum_probs=135.9
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhhh-hhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYER-AFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~~-~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++ .+|+||+++|+|.+++
T Consensus 6 G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~~~l 85 (257)
T cd05115 6 GNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLNKFL 85 (257)
T ss_pred CCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHHHHH
Confidence 467899998764 3456899988654322 2345666666543 2689999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......+++.++.+++.++++|++||| ..+++||||||+||+++.+..+|++|||+++......... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~ 162 (257)
T cd05115 86 SGKKDEITVSNVVELMHQVSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPL 162 (257)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCc
Confidence 755556899999999999999999999 5689999999999999999999999999998654332110 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | + |+.|..+.. ......++.... ....+..
T Consensus 163 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~~------------------~~~~~~~ 222 (257)
T cd05115 163 KWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK--GPEVMSFIEQGK------------------RLDCPAE 222 (257)
T ss_pred ccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC--HHHHHHHHHCCC------------------CCCCCCC
Confidence 0112245666 4 2 555543210 111111111100 0011122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+...+.+++.+|++.+|++||+|.+|.+.|+.+
T Consensus 223 ~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 223 CPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 345677899999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=182.56 Aligned_cols=212 Identities=23% Similarity=0.346 Sum_probs=138.4
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||.+.. .++..+|+|.+..... .....|..|++.++ .+++||+++|+
T Consensus 15 g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~ 94 (283)
T cd05080 15 GHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGS 94 (283)
T ss_pred CCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCC
Confidence 45788876542 3567899999865432 22345556665532 26889999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
|.+++... .++|.++..++.++++|++||| ..+|+||||||+||+++.++.++++|||+++........
T Consensus 95 l~~~~~~~--~l~~~~~~~i~~~l~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~ 169 (283)
T cd05080 95 LRDYLPKH--KLNLAQLLLFAQQICEGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRED 169 (283)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCC
Confidence 99988643 4899999999999999999999 668999999999999999999999999999866432210
Q ss_pred --------cc----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC-CCcceeeeccccccccccc
Q 041082 533 --------FT----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP-ISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 533 --------~~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~~~ 590 (639)
.+ ....+.++||| | ||+.|.......-..+..+...... ....+.++.....
T Consensus 170 ~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 243 (283)
T cd05080 170 GDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRL------ 243 (283)
T ss_pred CCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCC------
Confidence 00 01122367787 6 6776654321110001000000000 0011111111110
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
..+..+...+.+++..|++.+|++||+|.+|+++|+++.
T Consensus 244 ~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~ 282 (283)
T cd05080 244 PCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH 282 (283)
T ss_pred CCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence 112234567888999999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=180.82 Aligned_cols=199 Identities=18% Similarity=0.274 Sum_probs=136.0
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++.+. .+..+|+|.+..... .....|..|+..++ .+||||+++|+|.+
T Consensus 16 G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 95 (266)
T cd05064 16 GRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDS 95 (266)
T ss_pred cCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHH
Confidence 458999998763 356899998865422 22345566666533 37899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------- 534 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------- 534 (639)
++......++|.++.+++.+++.|++||| ..+++||||||+||+++.++.++++|||.+...........
T Consensus 96 ~l~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~ 172 (266)
T cd05064 96 FLRKHEGQLVAGQLMGMLPGLASGMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPV 172 (266)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCce
Confidence 98764456899999999999999999999 67899999999999999999999999998765322110000
Q ss_pred ---------ccccccccccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 535 ---------QNTNTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ---------~~~~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.++||| | +|+.|..+.. ...+.+.+. +.. ....+..
T Consensus 173 ~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~--~~~~~~~~~----~~~--------------~~~~~~~ 232 (266)
T cd05064 173 LWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS--GQDVIKAVE----DGF--------------RLPAPRN 232 (266)
T ss_pred eecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC--HHHHHHHHH----CCC--------------CCCCCCC
Confidence 00112256666 4 3555553210 111111111 000 0011233
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+...+.+++..||+.+|++||+|.++.+.|+++
T Consensus 233 ~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 233 CPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred CCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 455688899999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=176.73 Aligned_cols=119 Identities=33% Similarity=0.449 Sum_probs=101.5
Q ss_pred CcCcceEEE-ecCCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 408 GFGSIYKAR-IQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 408 g~g~vy~~~-l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.||.||++. ...|..||+|++.+... +......+|+.+++ +||+|||++ +|..+
T Consensus 129 Tyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GL 207 (560)
T KOG0600|consen 129 TYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGL 207 (560)
T ss_pred chhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhh
Confidence 488999997 56789999999988763 33344456777744 378999987 89888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+......++..+...+..|+..||+|+| ..+|+|||||.+|||+|.++..||+|||||+++....
T Consensus 208 l~~p~vkft~~qIKc~mkQLl~Gl~~cH---~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~ 272 (560)
T KOG0600|consen 208 LSSPGVKFTEPQIKCYMKQLLEGLEYCH---SRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSG 272 (560)
T ss_pred hcCCCcccChHHHHHHHHHHHHHHHHHh---hcCeeeccccccceEEcCCCCEEeccccceeeccCCC
Confidence 8876677999999999999999999999 7889999999999999999999999999999887654
|
|
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=191.11 Aligned_cols=217 Identities=24% Similarity=0.293 Sum_probs=155.2
Q ss_pred CCcCcceEEEecCC-ceeeeEEechhhhhhhhhHHHHHHHHHh----------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARIQDG-MKVAVKVFDLQYERAFKSFDVACDMMKK----------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~~g-~~vavK~l~~~~~~~~~~f~~e~~~~~~----------------------------Lv~ey~~~g 457 (639)
.||..||.+....+ ..+|+|++-............|+++||. |.|||+++|
T Consensus 48 GGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg 127 (738)
T KOG1989|consen 48 GGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGG 127 (738)
T ss_pred CCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCC
Confidence 68999999998766 9999999877777778888899988764 569999999
Q ss_pred Cchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc--cccCCC--
Q 041082 458 SLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL--LKEDQS-- 532 (639)
Q Consensus 458 sL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~--~~~~~~-- 532 (639)
+|-+++.. ....|+....++|+.++++|+++|| .+.|||||||||.+|||+..++.-|+||||=|--. ......
T Consensus 128 ~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH-~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~ 206 (738)
T KOG1989|consen 128 SLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMH-YLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEV 206 (738)
T ss_pred cHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHh-cCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHH
Confidence 99998864 1234899999999999999999999 67899999999999999999999999999966422 211100
Q ss_pred -----------ccccccccccccc-cCCCCCCCccCCCccchHHHHHhhCCCC---cceeeeccccccccccccchHHHH
Q 041082 533 -----------FTQNTNTCHHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPIS---VMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 -----------~~~~~~~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....++-.-.|+| |-+-.++.|+|.-|..|-.......|.+ -..+++.+-.- ...+...
T Consensus 207 ~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~------P~~p~ys 280 (738)
T KOG1989|consen 207 NYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSF------PPFPNYS 280 (738)
T ss_pred HHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccC------CCCccHH
Confidence 0011111246777 4322233343333333322222222322 23444443221 1224667
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
..+..|+..|++++|++||...+|++.+.++..
T Consensus 281 ~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~ 313 (738)
T KOG1989|consen 281 DRLKDLIRTMLQPNPDERPNIYQVLEEIFELAN 313 (738)
T ss_pred HHHHHHHHHHhccCcccCCCHHHHHHHHHHHhc
Confidence 788999999999999999999999999988864
|
|
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-19 Score=178.94 Aligned_cols=197 Identities=21% Similarity=0.354 Sum_probs=135.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS- 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~- 465 (639)
.++|.||++...++..+++|.+..... ....+..|...++ .+++||+++|+|.++++.
T Consensus 17 g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 95 (261)
T cd05072 17 GQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSD 95 (261)
T ss_pred cCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHh
Confidence 568899999988888899998764332 2345555655533 268999999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc---------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ--------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~--------- 535 (639)
....+++.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++......... ..
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a 172 (261)
T cd05072 96 EGGKVLLPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTA 172 (261)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCC
Confidence 2346899999999999999999999 6789999999999999999999999999998664322110 00
Q ss_pred ------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++|+| | | |+.|.... ....+..++....+. +....+...
T Consensus 173 PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~~ 232 (261)
T cd05072 173 PEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM--SNSDVMSALQRGYRM------------------PRMENCPDE 232 (261)
T ss_pred HHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC--CHHHHHHHHHcCCCC------------------CCCCCCCHH
Confidence 0011245666 4 4 44444311 011111111110000 001122345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
+.+++.+|+..+|++||+|.++.+.|++
T Consensus 233 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 233 LYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred HHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 7789999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-19 Score=181.31 Aligned_cols=192 Identities=25% Similarity=0.318 Sum_probs=132.9
Q ss_pred cCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccCC
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~~ 467 (639)
.|.||.+. ...++.||+|++++.......-...|+.+|+. .|||||++|+|.+.+..
T Consensus 286 SG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~-- 363 (550)
T KOG0578|consen 286 TGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTK-- 363 (550)
T ss_pred ccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhc--
Confidence 57788876 45678999999998765544445556655432 58999999999998854
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccc-------
Q 041082 468 YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC------- 540 (639)
Q Consensus 468 ~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~------- 540 (639)
..++..+...|+.++.+||+||| ..+|+|||||+.|||++.++.+||+|||+...+.......+..++|.
T Consensus 364 ~~~~E~qIA~Icre~l~aL~fLH---~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEV 440 (550)
T KOG0578|consen 364 TRMTEGQIAAICREILQGLKFLH---ARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEV 440 (550)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH---hcceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhh
Confidence 45899999999999999999999 78899999999999999999999999999988876553322233332
Q ss_pred --------ccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHH
Q 041082 541 --------HHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNL 603 (639)
Q Consensus 541 --------~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l 603 (639)
|.||| | .|..|+-. +.-....|.- ..+ --|.+.. ++-.-..+-+.
T Consensus 441 vtrk~YG~KVDIWSLGIMaIEMveGEPPYln---E~PlrAlyLI---a~n----g~P~lk~--------~~klS~~~kdF 502 (550)
T KOG0578|consen 441 VTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN---ENPLRALYLI---ATN----GTPKLKN--------PEKLSPELKDF 502 (550)
T ss_pred hhhcccCccccchhhhhHHHHHhcCCCCccC---CChHHHHHHH---hhc----CCCCcCC--------ccccCHHHHHH
Confidence 55666 4 45555431 1111111110 000 0111111 11122234456
Q ss_pred HhhccCCCCCCCCCHHHHHH
Q 041082 604 AMECTAESPKQRINAKESVT 623 (639)
Q Consensus 604 ~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+|++.+|++||++.|.++
T Consensus 503 L~~cL~~dv~~RasA~eLL~ 522 (550)
T KOG0578|consen 503 LDRCLVVDVEQRASAKELLE 522 (550)
T ss_pred HHHHhhcchhcCCCHHHHhc
Confidence 66999999999999999985
|
|
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=177.78 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=136.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+++|.+..... ..+.+..|+..++ .+++||+++++|.+++...
T Consensus 17 g~~~~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~ 95 (261)
T cd05068 17 GQFGEVWEGLWNNTTPVAVKTLKPGTM-DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGG 95 (261)
T ss_pred cCCccEEEEEecCCeEEEEEeeCCCcc-cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhcc
Confidence 467899999887788899999865432 2345666665533 3689999999999998653
Q ss_pred -CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----------
Q 041082 467 -NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----------- 534 (639)
Q Consensus 467 -~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----------- 534 (639)
...++|.+..+++.+++.|++||| ..+++||||||+||++++++.++++|||+++..........
T Consensus 96 ~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a 172 (261)
T cd05068 96 AGRALKLPQLIDMAAQVASGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTA 172 (261)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccC
Confidence 246899999999999999999999 66899999999999999999999999999987653221100
Q ss_pred -c----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCCc------ceeeeccccccccccccchHHHHHHHHH
Q 041082 535 -Q----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPISV------MEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 -~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~~------~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
. ...+.++||| +-|..+.+++. ...|... ...++.... ...+..+...+.+
T Consensus 173 PE~~~~~~~~~~~Di~-----------slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 235 (261)
T cd05068 173 PEAALYNRFSIKSDVW-----------SFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYR------MPCPPGCPKELYD 235 (261)
T ss_pred ccccccCCCCchhhHH-----------HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC------CCCCCcCCHHHHH
Confidence 0 0112245555 22333333322 1111100 000000000 0011223456788
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
++.+|++.+|++||+|.++++.|++
T Consensus 236 li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 236 IMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred HHHHHhhcCcccCCCHHHHHHHHhc
Confidence 9999999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-19 Score=178.56 Aligned_cols=202 Identities=23% Similarity=0.331 Sum_probs=136.0
Q ss_pred CCcCcceEEEe-cCCc----eeeeEEechhhh-hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGM----KVAVKVFDLQYE-RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~----~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.. ..+. .+|+|.+..... .....+..+...++ .++++|+++|+|.+
T Consensus 18 G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~l~~ 97 (279)
T cd05109 18 GAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPYGCLLD 97 (279)
T ss_pred CCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCCCCHHH
Confidence 56889999985 3443 478998754321 22334444444322 26789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F------ 533 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~------ 533 (639)
+++.....+++.....++.++++||+||| +.+|+||||||+||++++++.+|++|||+++.+...... .
T Consensus 98 ~l~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~ 174 (279)
T cd05109 98 YVRENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVP 174 (279)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccc
Confidence 98765556899999999999999999999 678999999999999999999999999999876432211 0
Q ss_pred -----cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 -----TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+. ...+.++||| | | |..|.+.. ....+..++..... .+.+.
T Consensus 175 ~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~ 234 (279)
T cd05109 175 IKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGI--PAREIPDLLEKGER------------------LPQPP 234 (279)
T ss_pred hhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHCCCc------------------CCCCc
Confidence 00 0112256666 4 4 55554321 11112222221100 00112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||++.+++..++++...
T Consensus 235 ~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05109 235 ICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD 271 (279)
T ss_pred cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 2344677899999999999999999999998877543
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-19 Score=182.27 Aligned_cols=202 Identities=21% Similarity=0.334 Sum_probs=132.9
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++... .+..+|+|++..... ...+.+..|+..++ .+++||+++|
T Consensus 18 G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~ 97 (337)
T cd05054 18 GAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFG 97 (337)
T ss_pred CcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecCCCC
Confidence 568999988642 246899998864321 11233334443321 2568999999
Q ss_pred CchhccccC------------------------------------------------------------CccCCHHHHHH
Q 041082 458 SLEKCLYSS------------------------------------------------------------NYILDIFQRLN 477 (639)
Q Consensus 458 sL~~~l~~~------------------------------------------------------------~~~l~~~~~~~ 477 (639)
+|.+++... ...++|.++.+
T Consensus 98 ~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 177 (337)
T cd05054 98 NLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLIS 177 (337)
T ss_pred CHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHH
Confidence 998877431 12579999999
Q ss_pred HHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------------c----cccccc
Q 041082 478 IMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------------T----QNTNTC 540 (639)
Q Consensus 478 i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------------~----~~~~~~ 540 (639)
++.+|++||+||| ..+|+||||||.||++++++.++|+|||+++.+....... + ....+.
T Consensus 178 ~~~qi~~aL~~lH---~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~ 254 (337)
T cd05054 178 YSFQVARGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTT 254 (337)
T ss_pred HHHHHHHHHHHHH---hCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCc
Confidence 9999999999999 6789999999999999999999999999998764322110 0 011223
Q ss_pred ccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCC
Q 041082 541 HHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAE 610 (639)
Q Consensus 541 ~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~ 610 (639)
++||| | | |+.|....... ..+.... ..... ...+......+.+++.+|++.
T Consensus 255 ~~Di~SlGv~l~el~t~g~~p~~~~~~~-~~~~~~~----~~~~~--------------~~~~~~~~~~~~~l~~~cl~~ 315 (337)
T cd05054 255 QSDVWSFGVLLWEIFSLGASPYPGVQID-EEFCRRL----KEGTR--------------MRAPEYATPEIYSIMLDCWHN 315 (337)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCcc-HHHHHHH----hccCC--------------CCCCccCCHHHHHHHHHHccC
Confidence 56776 5 3 55554321100 0111111 11000 001112334678899999999
Q ss_pred CCCCCCCHHHHHHHHHHhHH
Q 041082 611 SPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 611 ~p~~RP~m~~v~~~l~~~~~ 630 (639)
+|++||++.||+++|+++.+
T Consensus 316 ~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 316 NPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred ChhhCcCHHHHHHHHHHHHh
Confidence 99999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=185.33 Aligned_cols=200 Identities=20% Similarity=0.313 Sum_probs=132.0
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.+||.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++|+
T Consensus 49 G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~ 128 (374)
T cd05106 49 GAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGD 128 (374)
T ss_pred CCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhccCCc
Confidence 468999987642 23579999986432 222334555655532 26899999999
Q ss_pred chhccccC---------------------------------------------------------------------Ccc
Q 041082 459 LEKCLYSS---------------------------------------------------------------------NYI 469 (639)
Q Consensus 459 L~~~l~~~---------------------------------------------------------------------~~~ 469 (639)
|.++++.. ...
T Consensus 129 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (374)
T cd05106 129 LLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWP 208 (374)
T ss_pred HHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCC
Confidence 98876431 124
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-c------------c--
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-F------------T-- 534 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~------------~-- 534 (639)
++|.+..+|+.+++.||+||| ..+|+||||||+||++++++.+||+|||+++.+...... . +
T Consensus 209 l~~~~~~~i~~qi~~aL~yLH---~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~ 285 (374)
T cd05106 209 LDLDDLLRFSSQVAQGMDFLA---SKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPES 285 (374)
T ss_pred cCHHHHHHHHHHHHHHHHHHH---HCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHH
Confidence 788889999999999999999 678999999999999999999999999999865432210 0 0
Q ss_pred --ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 --QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 --~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.++||| | | |+.|....... ..+...+.... ....+ ......+.+
T Consensus 286 ~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~-~~~~~~~~~~~-----~~~~~-------------~~~~~~l~~ 346 (374)
T cd05106 286 IFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN-SKFYKMVKRGY-----QMSRP-------------DFAPPEIYS 346 (374)
T ss_pred hcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc-HHHHHHHHccc-----CccCC-------------CCCCHHHHH
Confidence 01122366777 5 3 66665432111 11111110000 00000 011235778
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
++.+|++.+|++||++.+|+++|+++
T Consensus 347 li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 347 IMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred HHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 88999999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=173.20 Aligned_cols=199 Identities=25% Similarity=0.333 Sum_probs=135.0
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~l 463 (639)
..+|.||.+.... |...|||..........+.+..|+.+++ .+.+||+++|||.+++
T Consensus 28 Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~ 107 (313)
T KOG0198|consen 28 GSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLI 107 (313)
T ss_pred ccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHH
Confidence 3488999998754 8899999987763222344555555532 2568999999999998
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeeccccccccccc--cC---C-C--c-
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLK--ED---Q-S--F- 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~--~~---~-~--~- 533 (639)
......++.....+++.+|.+||+||| +.+++|||||+.|||++. ++.+||+|||+|+.... .. . + .
T Consensus 108 ~~~g~~l~E~~v~~ytr~iL~GL~ylH---s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gt 184 (313)
T KOG0198|consen 108 KRYGGKLPEPLVRRYTRQILEGLAYLH---SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGT 184 (313)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCC
Confidence 764336899999999999999999999 788999999999999999 79999999999987653 11 0 0 0
Q ss_pred -----cccc--c-c--cccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 -----TQNT--N-T--CHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 -----~~~~--~-~--~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+... + . .++||| | ||++|-.+. ....+|+....... .-|.+ +.
T Consensus 185 p~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~----~~~~~~~~~ig~~~----~~P~i----------p~ 246 (313)
T KOG0198|consen 185 PNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF----FEEAEALLLIGRED----SLPEI----------PD 246 (313)
T ss_pred ccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh----cchHHHHHHHhccC----CCCCC----------Cc
Confidence 0000 1 1 267888 6 777776532 11112221111111 11111 11
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
......-+....|.+.+|++|||+.+.+..-.
T Consensus 247 ~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf 278 (313)
T KOG0198|consen 247 SLSDEAKDFLRKCFKRDPEKRPTAEELLEHPF 278 (313)
T ss_pred ccCHHHHHHHHHHhhcCcccCcCHHHHhhChh
Confidence 12233455667999999999999999987654
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-19 Score=166.71 Aligned_cols=218 Identities=21% Similarity=0.241 Sum_probs=141.3
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
..||.||++. +.+|..+|.|.+..... ........|+.+++ .+||||+..|+|+.
T Consensus 30 GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsq 109 (375)
T KOG0591|consen 30 GSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQ 109 (375)
T ss_pred CcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHH
Confidence 3488999987 67899999998764432 23344455555532 47999999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCC--eEeecCCCCceeecCCcceeeccccccccccccCCCcccc
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTP--IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~--i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~ 536 (639)
.+.. ..+.++.....++..+.++||..+|+.. ++ |+||||||.||.++..+.+|++|||++|++..+.......
T Consensus 110 mIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~ 188 (375)
T KOG0591|consen 110 MIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSL 188 (375)
T ss_pred HHHHHHhccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhh
Confidence 8864 4456788889999999999999999532 44 9999999999999999999999999999987765443333
Q ss_pred ccccc----cccccCCCCCCCccCCCccchHHHHHhhCCCCcc--eeeeccccccccccccch-HHHHHHHHHHHhhccC
Q 041082 537 TNTCH----HRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVM--EVVDVNLLSMEDKYFTTK-KQCLSFVFNLAMECTA 609 (639)
Q Consensus 537 ~~~~~----~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~~~~l~~~C~~ 609 (639)
++|.. ..+-+.|-.+.+|+|+-|.-+.+...-..|.... ..+..+|... +.+..+ +-....+-+|+-.|+.
T Consensus 189 VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qg--d~~~~p~~~YS~~l~~li~~ci~ 266 (375)
T KOG0591|consen 189 VGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQG--DYPPLPDEHYSTDLRELINMCIA 266 (375)
T ss_pred cCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcC--CCCCCcHHHhhhHHHHHHHHHcc
Confidence 33320 0000234444444444444444433322222110 1111111111 011122 2345677888999999
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 041082 610 ESPKQRINAKESVTRLLK 627 (639)
Q Consensus 610 ~~p~~RP~m~~v~~~l~~ 627 (639)
.+|+.||+-...+..++.
T Consensus 267 vd~~~RP~t~~~v~di~~ 284 (375)
T KOG0591|consen 267 VDPEQRPDTVPYVQDIQS 284 (375)
T ss_pred CCcccCCCcchHHHHHHH
Confidence 999999986555554443
|
|
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-19 Score=179.12 Aligned_cols=201 Identities=21% Similarity=0.345 Sum_probs=133.8
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhhh-hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQYE-RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+. .+++|.+..... .....+..++...+ .+++||+++|+|.+
T Consensus 18 G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~gsL~~ 97 (279)
T cd05111 18 GVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPLGSLLD 97 (279)
T ss_pred cCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCCCcHHH
Confidence 568899999863 343 477777653321 12234444443321 26789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--ccc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~---- 535 (639)
++......++|.....++.+++.||+||| ..+++||||||+||+++.++.+|++|||+++........ .+.
T Consensus 98 ~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~ 174 (279)
T cd05111 98 HVRQHRDSLDPQRLLNWCVQIAKGMYYLE---EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTP 174 (279)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCc
Confidence 99765567899999999999999999999 667999999999999999999999999999876433211 000
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|..+.. ...+.+++.... ...+ +.
T Consensus 175 ~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~~~-----~~~~-------------~~ 234 (279)
T cd05111 175 IKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR--PHEVPDLLEKGE-----RLAQ-------------PQ 234 (279)
T ss_pred ccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHCCC-----cCCC-------------CC
Confidence 0112256666 4 3 555543211 111122221100 0000 11
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+...+.+++.+|+..+|++||+|.|+.+.++.+.+
T Consensus 235 ~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~ 270 (279)
T cd05111 235 ICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR 270 (279)
T ss_pred CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence 233456778899999999999999999999988654
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=179.07 Aligned_cols=199 Identities=26% Similarity=0.413 Sum_probs=130.9
Q ss_pred CCcCcceEEEecCC---ceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQDG---MKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~~g---~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~ 455 (639)
.++|.||++..... ..+|+|.+.... ......+..|...++ .+++||++
T Consensus 10 G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~ 89 (272)
T cd05075 10 GEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMK 89 (272)
T ss_pred ccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCC
Confidence 46889999987543 258899876432 222344555544421 25789999
Q ss_pred CCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 456 HGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 456 ~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+|+|.+++.. ....++|.....++.+++.|++||| ..+|+||||||+||+++.++.+|++|||+++......
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (272)
T cd05075 90 HGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGD 166 (272)
T ss_pred CCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCCcccccCccc
Confidence 9999887632 2245899999999999999999999 6789999999999999999999999999998764322
Q ss_pred CCc-------c----------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF-------T----------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~-------~----------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... + ....+.++|+| | + |+.|.... ....+.+.+. ....
T Consensus 167 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~---~~~~--------- 232 (272)
T cd05075 167 YYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGV--ENSEIYDYLR---QGNR--------- 232 (272)
T ss_pred ceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHH---cCCC---------
Confidence 100 0 00112256666 4 3 44443311 0011111110 0000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
......+...+.+++.+|++.+|++||+|.+++++|+++
T Consensus 233 ------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 233 ------LKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred ------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 000112344578899999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-19 Score=176.74 Aligned_cols=198 Identities=22% Similarity=0.353 Sum_probs=135.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+++|.+..... ....+..|++.++ .+++||+++|+|.+++..
T Consensus 17 g~~~~v~~~~~~~~~~~~~~K~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 95 (263)
T cd05052 17 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 95 (263)
T ss_pred cccceEEEEEEecCCceEEEEEecCCch-HHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHh
Confidence 347889998865 478899998764322 2345555555532 268999999999998865
Q ss_pred C-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 466 S-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 466 ~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
. ...++|..+..++.++++||+||| ..+++||||||+||++++++.+|++|||+++.........
T Consensus 96 ~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~ 172 (263)
T cd05052 96 CNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 172 (263)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccC
Confidence 3 345899999999999999999999 6689999999999999999999999999998765432110
Q ss_pred -cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | | |..|... ....++....... .. .+.++.+..
T Consensus 173 aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~-----~~~~~~~~~~~~~---------~~------~~~~~~~~~ 232 (263)
T cd05052 173 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-----IDLSQVYELLEKG---------YR------MERPEGCPP 232 (263)
T ss_pred CHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHCC---------CC------CCCCCCCCH
Confidence 00 0112256666 5 4 5555432 1111111111000 00 001112334
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+++.+|++.+|++||+|.++.++|+.+
T Consensus 233 ~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 233 KVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred HHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 677889999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-19 Score=175.53 Aligned_cols=196 Identities=27% Similarity=0.360 Sum_probs=133.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++... |..+++|...... ..+.+..|+..++ .+++||+++|+|.+++..
T Consensus 17 g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 93 (256)
T cd05082 17 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 93 (256)
T ss_pred cCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHh
Confidence 457889998765 6778999875432 2345555655532 368999999999998875
Q ss_pred CC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc---------
Q 041082 466 SN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ--------- 535 (639)
Q Consensus 466 ~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~--------- 535 (639)
.. ..++|..+.+++.+++.|++||| ..+++||||||+||++++++.+|++|||+++...........
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~ 170 (256)
T cd05082 94 RGRSVLGGDCLLKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 170 (256)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHH
Confidence 33 35899999999999999999999 668999999999999999999999999998865432211000
Q ss_pred ---cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 536 ---NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 536 ---~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
...+.++||| | + |+.|... ..+.+++........ .+....+...+.+
T Consensus 171 ~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~-----~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 230 (256)
T cd05082 171 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPR-----IPLKDVVPRVEKGYK---------------MDAPDGCPPVVYD 230 (256)
T ss_pred HccCCCCchhhhHHHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHhcCCC---------------CCCCCCCCHHHHH
Confidence 0112256666 5 3 5554431 122222211100000 0011223446778
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
++.+|++.+|++||+|.+++++|+++
T Consensus 231 li~~~l~~~p~~Rpt~~~l~~~l~~~ 256 (256)
T cd05082 231 VMKQCWHLDAATRPSFLQLREQLEHI 256 (256)
T ss_pred HHHHHhcCChhhCcCHHHHHHHHhcC
Confidence 89999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-19 Score=179.57 Aligned_cols=208 Identities=27% Similarity=0.404 Sum_probs=136.8
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+++|.+..........+..|++.++ .+|+||+++|+|.
T Consensus 16 G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 95 (288)
T cd05093 16 GAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLN 95 (288)
T ss_pred cCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHH
Confidence 45788998864 234568899887655444556777766643 2689999999999
Q ss_pred hccccC------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 461 KCLYSS------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 461 ~~l~~~------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+++... ...++|.++.+++.+++.||+||| ..+++||||||+||++++++.++++|||+++....
T Consensus 96 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~ 172 (288)
T cd05093 96 KFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYS 172 (288)
T ss_pred HHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEeccCCccccccC
Confidence 887632 124899999999999999999999 67899999999999999999999999999986543
Q ss_pred cCCC--c-----------cc----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeecccccccc
Q 041082 529 EDQS--F-----------TQ----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMED 587 (639)
Q Consensus 529 ~~~~--~-----------~~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~ 587 (639)
.... . +. ...+.++|+| +.|..+.+++. ...|.. ..+.++....+..
T Consensus 173 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiw-----------slG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~- 240 (288)
T cd05093 173 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW-----------SLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV- 240 (288)
T ss_pred CceeecCCCCCccccccCHHHhccCCCCchhhHH-----------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCc-
Confidence 2211 0 00 0112245555 33333333322 111110 0000000000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+..+...+.+++.+|++.+|.+||+|.||.+.|+.+...
T Consensus 241 --~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~ 282 (288)
T cd05093 241 --LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA 282 (288)
T ss_pred --CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence 000111234578899999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-19 Score=176.38 Aligned_cols=199 Identities=22% Similarity=0.427 Sum_probs=137.6
Q ss_pred CCcCcceEEEecC-C---ceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-G---MKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g---~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... + ..+++|.+.... ......+..++..++ .+||||+++|+|.+
T Consensus 16 g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 95 (268)
T cd05063 16 GEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDK 95 (268)
T ss_pred CCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHH
Confidence 4578999998752 3 368999876543 222345656665532 37899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------- 533 (639)
++......++|.++.+++.+++.|++||| ..+++||||||+||+++.++.++++|||+++.........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~ 172 (268)
T cd05063 96 YLRDHDGEFSSYQLVGMLRGIAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKI 172 (268)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCc
Confidence 98765456899999999999999999999 6689999999999999999999999999998664321110
Q ss_pred ------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 ------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ...+.++||| | | |+.|.... .-.++........ . ....
T Consensus 173 ~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~-----~~~~~~~~i~~~~---------~------~~~~ 232 (268)
T cd05063 173 PIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM-----SNHEVMKAINDGF---------R------LPAP 232 (268)
T ss_pred CceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC-----CHHHHHHHHhcCC---------C------CCCC
Confidence 00 0112356777 5 4 66665321 1112221111000 0 0011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
..+...+.+++.+|++.+|++||+|.+|++.|+++
T Consensus 233 ~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 233 MDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 22345678999999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=175.92 Aligned_cols=199 Identities=23% Similarity=0.414 Sum_probs=135.9
Q ss_pred CCcCcceEEEecC----CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.+.. ...+++|.+..... .....|..|+..++ .+++||+++|+|.+
T Consensus 15 g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~ 94 (266)
T cd05033 15 GEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDK 94 (266)
T ss_pred CccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHH
Confidence 5689999998743 35789998765432 22345555655532 26899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-c-------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-F------- 533 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~------- 533 (639)
++......++|.++.+++.+++.|++||| ..+|+||||||+||++++++.++++|||+++........ .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~ 171 (266)
T cd05033 95 FLRENDGKFTVGQLVGMLRGIASGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIP 171 (266)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCC
Confidence 98765557899999999999999999999 678999999999999999999999999999876421110 0
Q ss_pred -----cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 -----TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+. ...+.++||| | | |..|..+. ....+.+++..... .+.+.
T Consensus 172 ~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~ 231 (266)
T cd05033 172 IRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM--SNQDVIKAVEDGYR------------------LPPPM 231 (266)
T ss_pred ccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCC
Confidence 00 0112255666 4 3 55444321 00111111110000 00112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+...+.+++.+|++.+|++||+|.||+++|+++
T Consensus 232 ~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 232 DCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 2334577899999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-19 Score=178.25 Aligned_cols=202 Identities=28% Similarity=0.441 Sum_probs=139.6
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.+|++... ++..+++|.+........+.+..|+..++ .+||||+++|+|.
T Consensus 16 g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 95 (291)
T cd05094 16 GAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLN 95 (291)
T ss_pred cCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHH
Confidence 467889988642 34568888886655544556766766533 3789999999999
Q ss_pred hccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 461 KCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 461 ~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+++... ...++|.++.+++.+++.|++||| ..+|+||||||+||+++.++.++++|||+++.
T Consensus 96 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~ 172 (291)
T cd05094 96 KFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRD 172 (291)
T ss_pred HHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEECCCCcccc
Confidence 988542 134899999999999999999999 67899999999999999999999999999976
Q ss_pred ccccCCC--c-----------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceee
Q 041082 526 LLKEDQS--F-----------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVV 578 (639)
Q Consensus 526 ~~~~~~~--~-----------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (639)
....... . +. ...+.++||| | | |+.|..... .....+... .....
T Consensus 173 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~---~~~~~--- 244 (291)
T cd05094 173 VYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS--NTEVIECIT---QGRVL--- 244 (291)
T ss_pred cCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHh---CCCCC---
Confidence 5432210 0 00 1112257777 5 5 666653211 111111111 11000
Q ss_pred eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 579 DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 579 d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+....+...+.+++.+|++.+|++||+|.+|+++|+++...
T Consensus 245 ------------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~ 285 (291)
T cd05094 245 ------------ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA 285 (291)
T ss_pred ------------CCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence 00112334677899999999999999999999999998654
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-19 Score=176.85 Aligned_cols=195 Identities=26% Similarity=0.375 Sum_probs=132.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++....+..+++|.+..... ....|..|++.++ .+|+||+++++|.+++...
T Consensus 15 G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 93 (256)
T cd05059 15 GQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRER 93 (256)
T ss_pred CCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhc
Confidence 457899999887777899998753322 2234555555532 3789999999999998764
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc---c--------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---Q-------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---~-------- 535 (639)
...++|.....++.+++.|++||| ..+++||||||+||+++.++.+|++|||+++.......... .
T Consensus 94 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P 170 (256)
T cd05059 94 KGKLGTEWLLDMCSDVCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPP 170 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCH
Confidence 456899999999999999999999 66799999999999999999999999999986543221100 0
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++|+| | | |+.|.+.. ..+ .....+... .. ...+..+...+
T Consensus 171 e~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-~~~-~~~~~~~~~--------~~----------~~~~~~~~~~~ 230 (256)
T cd05059 171 EVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF-SNS-EVVESVSAG--------YR----------LYRPKLAPTEV 230 (256)
T ss_pred HHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC-CHH-HHHHHHHcC--------Cc----------CCCCCCCCHHH
Confidence 0111246666 4 3 44444311 000 011111000 00 01112234568
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
.+++.+|+..+|++||+|.||++.|
T Consensus 231 ~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 231 YTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred HHHHHHHhcCChhhCcCHHHHHHHh
Confidence 8899999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=171.51 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=136.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.+|++... +|..+++|.+.... ......+..|++.++ .+|+||+++|+|.++
T Consensus 13 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 92 (267)
T cd08224 13 GQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRM 92 (267)
T ss_pred CCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHH
Confidence 457889999876 78899999875322 222345555655533 268999999999988
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
+.. ....+++.++..++.++++|++||| ..+++||||||+||+++.++.++++|||+++.........
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 169 (267)
T cd08224 93 IKHFKKQKRLIPERTIWKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT 169 (267)
T ss_pred HHHhcccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCC
Confidence 753 2345899999999999999999999 6789999999999999999999999999987654322110
Q ss_pred -----cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch-H
Q 041082 534 -----TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK-K 594 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~ 594 (639)
+. ...+.++|+| | +|+.|... ....+.++........ . .+.+ .
T Consensus 170 ~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~~~~~----~-----------~~~~~~ 231 (267)
T cd08224 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKIEKCD----Y-----------PPLPAD 231 (267)
T ss_pred ccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCccc---CCccHHHHHhhhhcCC----C-----------CCCChh
Confidence 00 0011245666 4 55555421 1222222221110000 0 0011 1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.....+.+++.+|+..+|++||++.+|+++++++.
T Consensus 232 ~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~ 266 (267)
T cd08224 232 HYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH 266 (267)
T ss_pred hcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence 33446778899999999999999999999998874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-19 Score=175.46 Aligned_cols=202 Identities=19% Similarity=0.287 Sum_probs=133.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.+|.+...++..+|+|.+..... ....|..++..++ .+++||+++|+|.+++...
T Consensus 15 G~~~~vy~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~ 93 (256)
T cd05113 15 GQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREH 93 (256)
T ss_pred cccceEEEEEecCCCcEEEEEcCCCcc-cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhc
Confidence 457889999887777799998764322 2345666666532 3689999999999988754
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-c----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-Q---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-~---------- 535 (639)
...++|.++.+++.+++.|++||| ..+++|+||||.||++++++.+|++|||+++.......... .
T Consensus 94 ~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~p 170 (256)
T cd05113 94 GKRFQPSQLLEMCKDVCEGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCH
Confidence 446899999999999999999999 67899999999999999999999999999886543221100 0
Q ss_pred -----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCCc---ceeeeccccccccccccchHHHHHHHHHHHhh
Q 041082 536 -----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAME 606 (639)
Q Consensus 536 -----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~ 606 (639)
...+.++||| +.|..+.+++. ...|... .++.+....... ...+......+.+++.+
T Consensus 171 e~~~~~~~~~~~Di~-----------slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~ 236 (256)
T cd05113 171 EVLLYSKFSSKSDVW-----------AFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLR---LYRPHLASEKVYAIMYS 236 (256)
T ss_pred HHHhcCcccchhHHH-----------HHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCC---CCCCCCCCHHHHHHHHH
Confidence 0011245555 33333333322 1111110 000000000000 00011123567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHH
Q 041082 607 CTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 607 C~~~~p~~RP~m~~v~~~l~ 626 (639)
|++.+|++||++.++++.|+
T Consensus 237 cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 237 CWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred HcCCCcccCCCHHHHHHhhC
Confidence 99999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-19 Score=174.01 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=135.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++...++..+++|.+..... .....+..|++.++ .+|+||+++|+|.+++..
T Consensus 6 g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 85 (250)
T cd05085 6 GNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRK 85 (250)
T ss_pred CCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHh
Confidence 467899999988889999998764432 22234555665533 278999999999998875
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------------ 533 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------------ 533 (639)
....++|.++..++.+++.|+.|+| ..+++||||||+||+++.++.+|++|||+++.........
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~a 162 (250)
T cd05085 86 KKDELKTKQLVKFALDAAAGMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTA 162 (250)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccC
Confidence 4456899999999999999999999 6789999999999999999999999999997543221110
Q ss_pred cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.++|+| | | |..|.... ....-... .... . ....+..+...
T Consensus 163 PE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~-----~~~~~~~~-~~~~--------~------~~~~~~~~~~~ 222 (250)
T cd05085 163 PEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGM-----TNQQAREQ-VEKG--------Y------RMSCPQKCPDD 222 (250)
T ss_pred HHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHH-HHcC--------C------CCCCCCCCCHH
Confidence 00 0112256666 4 3 55454321 11110000 0000 0 00011223456
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+.+++.+|++.+|++||+|.|++++|.
T Consensus 223 ~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 223 VYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 888999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-19 Score=175.04 Aligned_cols=198 Identities=21% Similarity=0.322 Sum_probs=135.9
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh--hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE--RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~--~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.+. .+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 6 G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~ 85 (257)
T cd05116 6 GNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGPLNKF 85 (257)
T ss_pred cCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCcHHHH
Confidence 457899998653 568899998864432 23345655655532 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T----- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~----- 534 (639)
+... ..+++..+.+++.+++.|++|+| ..+|+||||||+||+++.++.+|++|||+++.+....... .
T Consensus 86 l~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 161 (257)
T cd05116 86 LQKN-KHVTEKNITELVHQVSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWP 161 (257)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCC
Confidence 8643 35889999999999999999999 6789999999999999999999999999998764332110 0
Q ss_pred ------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 535 ------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 535 ------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
. ...+.++|+| | | |+.|..+. ....+.+.+.. ... . +.+.
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~i~~---~~~---~------------~~~~ 221 (257)
T cd05116 162 VKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM--KGNEVTQMIES---GER---M------------ECPQ 221 (257)
T ss_pred ccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHC---CCC---C------------CCCC
Confidence 0 0112256776 5 4 56565421 11112222211 000 0 0111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+...+.+++.+|++.+|++||+|.+|+++|+..
T Consensus 222 ~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~ 255 (257)
T cd05116 222 RCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred CCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence 2334567899999999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=171.73 Aligned_cols=196 Identities=23% Similarity=0.274 Sum_probs=135.2
Q ss_pred CcCcceEEEe-cCCceeeeEEechhhhhh-----hh--hHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQYERA-----FK--SFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~~~~-----~~--~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
+||.|-.+.- ..|+.+|||.+....... .+ ....|+++++ ++|+|||++|.|
T Consensus 184 afg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeL 263 (475)
T KOG0615|consen 184 AFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGEL 263 (475)
T ss_pred ceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccH
Confidence 4677777764 468999999986543221 11 2346777755 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC---cceeeccccccccccccCCCcc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN---MVAHLSDFGMAKLLLKEDQSFT-- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~---~~~~i~dfgla~~~~~~~~~~~-- 534 (639)
.+.+-.. ..+......-++.|+..|+.||| +.+|+||||||.|||+..+ .-+||+|||+|++.+....-.+
T Consensus 264 fd~vv~n-k~l~ed~~K~~f~Qll~avkYLH---~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlC 339 (475)
T KOG0615|consen 264 FDKVVAN-KYLREDLGKLLFKQLLTAVKYLH---SQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLC 339 (475)
T ss_pred HHHHHhc-cccccchhHHHHHHHHHHHHHHH---HcCcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhc
Confidence 9887643 33555556778999999999999 7889999999999999755 7899999999998864432100
Q ss_pred --------cc-------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 --------QN-------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 --------~~-------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
.. ....+.|+| | ||..|.++.+.. .++.+-+.. +.+...+
T Consensus 340 GTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~-~sl~eQI~~---------------G~y~f~p 403 (475)
T KOG0615|consen 340 GTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTD-PSLKEQILK---------------GRYAFGP 403 (475)
T ss_pred CCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCC-ccHHHHHhc---------------CcccccC
Confidence 00 011256888 7 899998765433 223332211 1111111
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+.-.+..+++-+.+..+|++||+..|+++
T Consensus 404 ~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 404 LQWDRISEEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred hhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 223344556777888999999999999999985
|
|
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-19 Score=174.94 Aligned_cols=199 Identities=23% Similarity=0.337 Sum_probs=138.1
Q ss_pred CCcCcceEEEecC----CceeeeEEechhhhh-hhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQYER-AFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~~~-~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+++|.+...... ....+..|++.++ .+|+||+++|+|.++
T Consensus 6 G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~ 85 (257)
T cd05060 6 GNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLKY 85 (257)
T ss_pred cCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCcHHHH
Confidence 4578999887532 267899988654432 3345666665543 267899999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+.... .++|..+..++.+++.|++||| ..+++||||||+||+++.++.+|++|||+++...........
T Consensus 86 l~~~~-~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~ 161 (257)
T cd05060 86 LKKRR-EIPVSDLKELAHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWP 161 (257)
T ss_pred HHhCC-CCCHHHHHHHHHHHHHHHHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCcccc
Confidence 87533 6899999999999999999999 667999999999999999999999999999866433211000
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++|+| | | |+.|.... .+..+..++....+ .+.+.
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~ 221 (257)
T cd05060 162 LKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEM--KGAEVIAMLESGER------------------LPRPE 221 (257)
T ss_pred ccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHHcCCc------------------CCCCC
Confidence 0112256776 5 4 55555421 12222233221110 01112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+...+.+++.+|+..+|++||++.++.+.|+++.
T Consensus 222 ~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~ 256 (257)
T cd05060 222 ECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP 256 (257)
T ss_pred CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence 23456788999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=171.27 Aligned_cols=197 Identities=23% Similarity=0.365 Sum_probs=135.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++...++..+++|.+..... ....+..|+..++ .++|||+++|+|.++++..
T Consensus 17 g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~ 95 (260)
T cd05069 17 GCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGD 95 (260)
T ss_pred cCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHHHHHhhCC
Confidence 567899999887777899998754322 2344555665533 3789999999999998753
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------------~ 534 (639)
...++|..+..++.+++.|++||| ..+++|||||+.||++++++.++++|||+++......... +
T Consensus 96 ~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~P 172 (260)
T cd05069 96 GKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP 172 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCH
Confidence 345899999999999999999999 6679999999999999999999999999998654322110 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | | |+.|..+.. .....++...... + ..+......+
T Consensus 173 e~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~~--------~----------~~~~~~~~~~ 232 (260)
T cd05069 173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV--NREVLEQVERGYR--------M----------PCPQGCPESL 232 (260)
T ss_pred HHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCC--------C----------CCCcccCHHH
Confidence 0 0112256666 5 4 555543211 1111111111000 0 0111233457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.+++.+|++.+|++||+|.+|++.|++
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 233 HELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 788889999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=173.99 Aligned_cols=199 Identities=22% Similarity=0.431 Sum_probs=135.1
Q ss_pred CCcCcceEEEecC-C---ceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-G---MKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g---~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++.... + ..+++|.+.... ......|..|+..++ .+|+||+++|+|.+
T Consensus 15 g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~ 94 (269)
T cd05065 15 GEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDS 94 (269)
T ss_pred CCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHH
Confidence 5688999998753 2 369999886542 223456666666533 36899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--c----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT--Q---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~--~---- 535 (639)
++......+++.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++.......... .
T Consensus 95 ~l~~~~~~~~~~~~~~i~~~l~~al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~ 171 (269)
T cd05065 95 FLRQNDGQFTVIQLVGMLRGIAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGG 171 (269)
T ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCC
Confidence 88765556899999999999999999999 67899999999999999999999999999986643221100 0
Q ss_pred --------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | + |..|.... ......+++.... ...
T Consensus 172 ~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~--~~~~~~~~i~~~~------------------~~~ 231 (269)
T cd05065 172 KIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM--SNQDVINAIEQDY------------------RLP 231 (269)
T ss_pred CcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcCC------------------cCC
Confidence 0011234555 3 1 44443211 0111111211000 001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.++...+.+++.+|++.+|++||+|.+|+.+|+++
T Consensus 232 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 232 PPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred CcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 1223445677899999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=176.01 Aligned_cols=201 Identities=19% Similarity=0.325 Sum_probs=137.4
Q ss_pred CCcCcceEEEecC-----CceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD-----GMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.... +..+++|.+.... ......+..|...++ .++++|+++|+|
T Consensus 17 g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L 96 (280)
T cd05043 17 GTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNL 96 (280)
T ss_pred cCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcH
Confidence 4688999998765 6888999875332 122344555555432 257789999999
Q ss_pred hhccccCC-------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC
Q 041082 460 EKCLYSSN-------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532 (639)
Q Consensus 460 ~~~l~~~~-------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~ 532 (639)
.+++.... ..++|.++..++.+++.||+||| ..+++||||||+||++++++.+|++|||+++.+......
T Consensus 97 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~ 173 (280)
T cd05043 97 KLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYH 173 (280)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceE
Confidence 98876421 45899999999999999999999 678999999999999999999999999999865432211
Q ss_pred c-------c----------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 533 F-------T----------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 533 ~-------~----------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
. + ....+.++||| | | |+.|..+. ....+..++......
T Consensus 174 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~~------------- 238 (280)
T cd05043 174 CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEI--DPFEMAAYLKDGYRL------------- 238 (280)
T ss_pred EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcC--CHHHHHHHHHcCCCC-------------
Confidence 0 0 01112356666 5 4 66555421 112222222211100
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.....+...+.+++.+|+..+|++||++.+|++.|+.+..
T Consensus 239 -----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~ 278 (280)
T cd05043 239 -----AQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA 278 (280)
T ss_pred -----CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 0011223457889999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=175.94 Aligned_cols=217 Identities=25% Similarity=0.316 Sum_probs=136.6
Q ss_pred CCcCcceEEEecC------CceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.++|.||++.... ...+++|.+.... .+....+..|++.++ .+++||+++|+
T Consensus 23 g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~ 102 (293)
T cd05053 23 GAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGN 102 (293)
T ss_pred cccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCc
Confidence 4578999987642 3578999876432 222344555655532 25789999999
Q ss_pred chhcccc---------------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccc
Q 041082 459 LEKCLYS---------------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMA 523 (639)
Q Consensus 459 L~~~l~~---------------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla 523 (639)
|.+++.. ....++|..+.+++.++|.|++||| ..+|+||||||+||+++.++.+|++|||++
T Consensus 103 L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~ 179 (293)
T cd05053 103 LRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLA 179 (293)
T ss_pred HHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCCCeEEeCccccc
Confidence 9988753 2345899999999999999999999 678999999999999999999999999999
Q ss_pred ccccccCCCcc--ccc---cccccccc-cCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeeccccccccccccch
Q 041082 524 KLLLKEDQSFT--QNT---NTCHHRIY-GTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 524 ~~~~~~~~~~~--~~~---~~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~~~~~ 593 (639)
+.+........ ... ......++ +.......|+|+.|..+.+.+. ...+.. ..++.+....+. ..+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~---~~~~~ 256 (293)
T cd05053 180 RDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGY---RMEKP 256 (293)
T ss_pred cccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCC---cCCCC
Confidence 87653221100 000 00011111 1122223344454544444222 111111 001111000000 00112
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
..+...+.+++.+|+..+|++||||.|+++.|+.+.
T Consensus 257 ~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 257 QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 233456888999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=177.98 Aligned_cols=192 Identities=27% Similarity=0.342 Sum_probs=139.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.||..+|.+.- ..|..+|+|++.... .........|+++.+ ++|.|.+++|+|..+
T Consensus 29 GgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el 108 (592)
T KOG0575|consen 29 GGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMEL 108 (592)
T ss_pred CcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHH
Confidence 57888999986 789999999997643 233456667777743 367899999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC-Ccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ-SFT------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~-~~~------- 534 (639)
+. ..+.++......+..||+.||.||| +.+|+|||||..|++|++++++||+|||||..+..+.. ..+
T Consensus 109 ~K-rrk~ltEpEary~l~QIv~GlkYLH---~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNY 184 (592)
T KOG0575|consen 109 LK-RRKPLTEPEARYFLRQIVEGLKYLH---SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNY 184 (592)
T ss_pred HH-hcCCCCcHHHHHHHHHHHHHHHHHH---hcCceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcc
Confidence 87 5567889888899999999999999 77899999999999999999999999999998874421 111
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...-+++.||| | +|++|.+.. .+.+-..... . -|.. .+.....
T Consensus 185 IAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk-----~vkety~~Ik-~-----~~Y~----------~P~~ls~ 243 (592)
T KOG0575|consen 185 IAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK-----TVKETYNKIK-L-----NEYS----------MPSHLSA 243 (592)
T ss_pred cChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc-----hHHHHHHHHH-h-----cCcc----------cccccCH
Confidence 11123478999 7 899988632 1222111100 0 0000 0111123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+|+..-++.+|.+|||..+|+.
T Consensus 244 ~A~dLI~~lL~~~P~~Rpsl~~vL~ 268 (592)
T KOG0575|consen 244 EAKDLIRKLLRPNPSERPSLDEVLD 268 (592)
T ss_pred HHHHHHHHHhcCCcccCCCHHHHhc
Confidence 4556777889999999999999985
|
|
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-19 Score=174.29 Aligned_cols=203 Identities=27% Similarity=0.383 Sum_probs=134.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++... |..+++|.+..... ..+.+..|+..++ .+|+||+++++|.+++...
T Consensus 17 g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~ 94 (256)
T cd05039 17 GEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSR 94 (256)
T ss_pred CCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhc
Confidence 457899998875 78899999876543 3455666665533 2688999999999988653
Q ss_pred C-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 467 N-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 467 ~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
. ..++|.....++.+++.|++||| ..+++||||||+||+++.++.++++|||+++...........
T Consensus 95 ~~~~~~~~~~~~~~~qi~~~l~~lh---~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~ 171 (256)
T cd05039 95 GRAVITLAQQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEAL 171 (256)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---hCCccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhh
Confidence 3 36899999999999999999999 678999999999999999999999999999866432211000
Q ss_pred --cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCCc---ceeeeccccccccccccchHHHHHHHHHHHhhccC
Q 041082 536 --NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTA 609 (639)
Q Consensus 536 --~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~ 609 (639)
...+.++||| +-|..+.+++. ...|... .++.+ .+.... ..+.+..+...+.+++.+|+.
T Consensus 172 ~~~~~~~~~Di~-----------slG~il~~l~~~g~~p~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~li~~~l~ 237 (256)
T cd05039 172 REKKFSTKSDVW-----------SFGILLWEIYSFGRVPYPRIPLKDVVP-HVEKGY--RMEAPEGCPPEVYKVMKDCWE 237 (256)
T ss_pred cCCcCCcHHHHH-----------HHHHHHHHHHhcCCCCCCCCCHHHHHH-HHhcCC--CCCCccCCCHHHHHHHHHHhc
Confidence 0011145555 22333333221 1111100 00000 000000 001112234567889999999
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 041082 610 ESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 610 ~~p~~RP~m~~v~~~l~~~ 628 (639)
.+|++||++.|++++|+.+
T Consensus 238 ~~p~~Rp~~~~l~~~l~~~ 256 (256)
T cd05039 238 LDPAKRPTFKQLREQLALI 256 (256)
T ss_pred cChhhCcCHHHHHHHHhcC
Confidence 9999999999999999753
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=174.60 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=131.9
Q ss_pred CCcCcceEEEecC----CceeeeEEechh-hhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQ-YERAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~-~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++...+ ...+|+|.+... .......+..+...++ .+++||+++|+|.
T Consensus 6 g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~ 85 (262)
T cd05058 6 GHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLR 85 (262)
T ss_pred cCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHH
Confidence 4578999987632 357899987432 1222344555554422 3678999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
+++.......++..+..++.+++.|++||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~ 162 (262)
T cd05058 86 NFIRSETHNPTVKDLIGFGLQVAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGA 162 (262)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccC
Confidence 998764445788888999999999999999 678999999999999999999999999999755332110
Q ss_pred -cc----------ccccccccccc--c-------CC-CCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 533 -FT----------QNTNTCHHRIY--G-------TR-RNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 533 -~~----------~~~~~~~~dvy--G-------tg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
.+ ....+.++||| | || ..|.... ....+..++.. .. ...
T Consensus 163 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~--~~~~~~~~~~~---~~---------------~~~ 222 (262)
T cd05058 163 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--DSFDITVYLLQ---GR---------------RLL 222 (262)
T ss_pred cCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHhc---CC---------------CCC
Confidence 00 01112256666 5 43 2333211 11111111110 00 000
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+......+.+++..|++.+|++||++.||+++|+++.
T Consensus 223 ~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~ 260 (262)
T cd05058 223 QPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF 260 (262)
T ss_pred CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence 01112345778999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=173.20 Aligned_cols=200 Identities=23% Similarity=0.316 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+++|...... ......+..|++.++ .+|+||+++++|.+++.
T Consensus 6 g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 85 (252)
T cd05084 6 GNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 85 (252)
T ss_pred ccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHH
Confidence 457899999874 67889999865322 222345666665533 26899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---------- 534 (639)
.....++|.++..++.+++.||+||| ..+++||||||.||+++.++.+|++|||+++..........
T Consensus 86 ~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y 162 (252)
T cd05084 86 TEGPRLKVKELIQMVENAAAGMEYLE---SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKW 162 (252)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceee
Confidence 65556899999999999999999999 67899999999999999999999999999875442211100
Q ss_pred ---c----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC------cceeeeccccccccccccchHHHHHHH
Q 041082 535 ---Q----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS------VMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ---~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~------~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| +-|..+.+++. ...|.. ..+.++..... ..+..+...+
T Consensus 163 ~aPE~~~~~~~~~~~Dv~-----------slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 225 (252)
T cd05084 163 TAPEALNYGRYSSESDVW-----------SFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL------PCPELCPDAV 225 (252)
T ss_pred cCchhhcCCCCChHHHHH-----------HHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCC------CCcccCCHHH
Confidence 0 0011245555 22222222221 111110 00001000000 1112234567
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.+++.+|++.+|++||+|.+|.++|+
T Consensus 226 ~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 226 YRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 88999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=170.86 Aligned_cols=198 Identities=22% Similarity=0.384 Sum_probs=136.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++...+...+++|.+..... ....+..|++..+ .+|+||+++|+|.+++...
T Consensus 17 g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~ 95 (262)
T cd05071 17 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEM 95 (262)
T ss_pred CCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCCcHHHHHhhcc
Confidence 567899999887777899998864322 2235555655532 3789999999999998752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------------ 534 (639)
...++|.++..++.+++.||+|+| ..+++||||||.||++++++.++++|||.++.+........
T Consensus 96 ~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~P 172 (262)
T cd05071 96 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 172 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCH
Confidence 345799999999999999999999 67899999999999999999999999999986543221100
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | | |+.|..+.... +..... .... . .....++...+
T Consensus 173 E~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~-----~~~~~~-~~~~----~----------~~~~~~~~~~l 232 (262)
T cd05071 173 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVLDQV-ERGY----R----------MPCPPECPESL 232 (262)
T ss_pred hHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH-----HHHHHH-hcCC----C----------CCCccccCHHH
Confidence 0 0112357777 5 5 55554321100 000000 0000 0 00112344567
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+++.+|++.+|++||++.++.+.|+..
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~~~~~l~~~ 260 (262)
T cd05071 233 HDLMCQCWRKEPEERPTFEYLQAFLEDY 260 (262)
T ss_pred HHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence 8999999999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=173.05 Aligned_cols=205 Identities=22% Similarity=0.385 Sum_probs=133.1
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+++|.+.... ......+..|+..++ .+|+||+++|+|.+
T Consensus 15 g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 94 (267)
T cd05066 15 GEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDA 94 (267)
T ss_pred cCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHH
Confidence 457889998763 23478999876433 222345555655532 26899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ--- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~--- 535 (639)
++......+++.+..+|+.+++.|++||| ..+++||||||+||+++.++.++++|||+++.+....... ..
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~ 171 (267)
T cd05066 95 FLRKHDGQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 171 (267)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCcc
Confidence 98765556899999999999999999999 6789999999999999999999999999998764332110 00
Q ss_pred ------------cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeeccccccccccccchHHHHHH
Q 041082 536 ------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 ------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.+.|+| +.|..+.+++. ...|.. ..+.++.-... ...+....+...
T Consensus 172 ~~~y~~pe~~~~~~~~~~~Dv~-----------slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 237 (267)
T cd05066 172 PIRWTAPEAIAYRKFTSASDVW-----------SYGIVMWEVMSYGERPYWEMSNQDVIKAIEEG---YRLPAPMDCPAA 237 (267)
T ss_pred ceeecCHhHhccCccCchhhhH-----------HHHHHHHHHhcCCCCCcccCCHHHHHHHHhCC---CcCCCCCCCCHH
Confidence 0011244555 33333332221 111110 00000000000 000111123345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+.+++.+|++.+|++||+|.+|++.|.++
T Consensus 238 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 238 LHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred HHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 67899999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=170.34 Aligned_cols=203 Identities=20% Similarity=0.296 Sum_probs=137.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+++|.+.... ......+..|+..++ .+++||+++|+|.++
T Consensus 13 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~ 92 (267)
T cd08228 13 GQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQM 92 (267)
T ss_pred CCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHH
Confidence 457889999864 67899999775322 222334555665533 267899999999887
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
+.. ....++.....+++.++++||+||| ..+++||||||+||+++.++.++++|||+++........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~ 169 (267)
T cd08228 93 IKYFKKQKRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT 169 (267)
T ss_pred HHHhhhccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCC
Confidence 753 2345788889999999999999999 678999999999999999999999999998865432210
Q ss_pred ----ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 533 ----FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 533 ----~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
.+. ...+.++|+| | ||+.|... +.....++........ .+.+ ....
T Consensus 170 ~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~---~~~~~~~~~~~~~~~~-----~~~~---------~~~~ 232 (267)
T cd08228 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLFSLCQKIEQCD-----YPPL---------PTEH 232 (267)
T ss_pred ccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcc---ccccHHHHHHHHhcCC-----CCCC---------Chhh
Confidence 000 1112356777 5 66666532 2222222222111100 0100 0122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
....+.+++.+|++.+|++||++.+|++.++.++
T Consensus 233 ~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~ 266 (267)
T cd08228 233 YSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH 266 (267)
T ss_pred cCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence 3356788889999999999999999999998764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=172.73 Aligned_cols=205 Identities=26% Similarity=0.401 Sum_probs=133.6
Q ss_pred CCcCcceEEEecC----CceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcC
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~ 454 (639)
.++|.||++.... +..+|+|.+..... .....+..|+..++ .+++||+
T Consensus 10 G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~ 89 (273)
T cd05035 10 GEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFM 89 (273)
T ss_pred CCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEecc
Confidence 4688999988642 36799998864321 22334555555422 3567999
Q ss_pred CCCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 455 PHGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 455 ~~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
++|+|..++.. ....+++.....++.+++.||+||| ..+++||||||+||++++++.+|++|||+++.....
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 166 (273)
T cd05035 90 KHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSG 166 (273)
T ss_pred CCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchheEEECCCCeEEECCccceeecccc
Confidence 99999887743 2235899999999999999999999 668999999999999999999999999999866433
Q ss_pred CCCccc-----------------cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeeccccccccc
Q 041082 530 DQSFTQ-----------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDK 588 (639)
Q Consensus 530 ~~~~~~-----------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~ 588 (639)
...... ...+.++||| +.|..+.+++. ...|.. ..+.++....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~-----------SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~--- 232 (273)
T cd05035 167 DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVW-----------AFGVTMWEIATRGQTPYPGVENHEIYDYLRHGN--- 232 (273)
T ss_pred ccccccccccCCccccCHhhcccCCCCcccchH-----------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC---
Confidence 211000 0111245555 33333333332 111110 001111000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
....+..+...+.+++.+|++.+|++||++.||++.|+++
T Consensus 233 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 233 RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 0011233456788999999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=177.08 Aligned_cols=207 Identities=25% Similarity=0.341 Sum_probs=133.3
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||++... .+..+++|...... ......+..|+..++ .++|||+++
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 105 (304)
T cd05101 26 GCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 105 (304)
T ss_pred cCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCC
Confidence 468899988642 23578999876432 222345555555432 278999999
Q ss_pred CCchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++... ...++|.++.+++.+++.||+||| ..+++||||||+||++++++.+|++|||
T Consensus 106 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili~~~~~~kl~D~g 182 (304)
T cd05101 106 GNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFG 182 (304)
T ss_pred CcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEEcCCCcEEECCCc
Confidence 9999888641 134788999999999999999999 6689999999999999999999999999
Q ss_pred ccccccccCCCc--c-----------c----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeec
Q 041082 522 MAKLLLKEDQSF--T-----------Q----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDV 580 (639)
Q Consensus 522 la~~~~~~~~~~--~-----------~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~ 580 (639)
+++......... . . ...+.++||| +-|..+.+++. ...+.. ..++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~-----------slG~~l~el~~~g~~p~~~~~~~~~~~~ 251 (304)
T cd05101 183 LARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW-----------SFGVLMWEIFTLGGSPYPGIPVEELFKL 251 (304)
T ss_pred cceecccccccccccCCCCCceeeCchhhccCCCCchhhHH-----------HHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence 998664322110 0 0 0012245555 33333333222 111100 0010000
Q ss_pred cccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 581 NLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+... .....+..+...+.+++.+|++.+|++||+|.||++.|+++..
T Consensus 252 -~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~ 298 (304)
T cd05101 252 -LKEG--HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILT 298 (304)
T ss_pred -HHcC--CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence 0000 0001112344567788999999999999999999999998854
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=172.13 Aligned_cols=144 Identities=28% Similarity=0.437 Sum_probs=114.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
..|+.||+|... .+..||||.+.... .........|+.+++ .|||||+.+|+|.+++
T Consensus 21 GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi 100 (429)
T KOG0595|consen 21 GSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYI 100 (429)
T ss_pred cceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHH
Confidence 347889999975 57999999998763 334445566776654 3799999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC------cceeeccccccccccccCCCccc--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN------MVAHLSDFGMAKLLLKEDQSFTQ-- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~------~~~~i~dfgla~~~~~~~~~~~~-- 535 (639)
+... .++.........|+|.||++|| ...||||||||.|||+... ...||+|||+||.+.+.....+.
T Consensus 101 ~~~~-~l~e~t~r~Fm~QLA~alq~L~---~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcG 176 (429)
T KOG0595|consen 101 RRRG-RLPEATARHFMQQLASALQFLH---ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCG 176 (429)
T ss_pred HHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhC
Confidence 8643 5888888999999999999999 7889999999999999764 56899999999999865543111
Q ss_pred ------------cccccccccc--c-------CCCCCCCc
Q 041082 536 ------------NTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 536 ------------~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+|+|.| | ||+.|++.
T Consensus 177 SplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a 216 (429)
T KOG0595|consen 177 SPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDA 216 (429)
T ss_pred CccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccc
Confidence 1123489999 7 89999874
|
|
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=172.05 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=134.5
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhh-hhhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||.+.. ..+..+++|.+.... ......+..|+..++ .+|+||+++++
T Consensus 15 g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~ 94 (284)
T cd05079 15 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGS 94 (284)
T ss_pred CCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCC
Confidence 46889998864 346789999886432 222344555555422 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc---c
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---Q 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---~ 535 (639)
|.+++......++|..+..++.+++.||+||| ..+++||||||+||+++.++.++++|||+++.+........ .
T Consensus 95 L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~ 171 (284)
T cd05079 95 LKEYLPRNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDD 171 (284)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCC
Confidence 99998654456899999999999999999999 67899999999999999999999999999986543221000 0
Q ss_pred ---------------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCC-----cceeeec---------cccc-c
Q 041082 536 ---------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPIS-----VMEVVDV---------NLLS-M 585 (639)
Q Consensus 536 ---------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~-----~~~~~d~---------~l~~-~ 585 (639)
...+.++|+| +-|..+.+......+.. ..+.+.+ .+.. .
T Consensus 172 ~~~~~~y~apE~~~~~~~~~~~Di~-----------slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (284)
T cd05079 172 LDSPVFWYAPECLIQSKFYIASDVW-----------SFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLE 240 (284)
T ss_pred CCCCccccCHHHhccCCCCccccch-----------hhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHH
Confidence 0111245555 33333332221100000 0000000 0000 0
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.....+.+..+...+.+++.+|++.+|++||++.+|++.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 241 EGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred cCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 0000011123456788999999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=169.68 Aligned_cols=200 Identities=22% Similarity=0.321 Sum_probs=135.0
Q ss_pred CcceEEE-ecCCceeeeEEechhhhh-hhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccC-
Q 041082 410 GSIYKAR-IQDGMKVAVKVFDLQYER-AFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 410 g~vy~~~-l~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
+.||++. .+.+..||||++++.... .......|+..+.. +||.||..||+.+.+...
T Consensus 40 a~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~ 119 (516)
T KOG0582|consen 40 AVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYY 119 (516)
T ss_pred eEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHc
Confidence 4688887 567899999999987533 24666677776543 689999999999988752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----ccccc----
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQNTN---- 538 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~~~~---- 538 (639)
...++......|..++.+||.||| ..+-||||+|+.|||+|++|.+|++|||.+..+.+..... ...++
T Consensus 120 ~~Gl~E~~Ia~iLre~LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~w 196 (516)
T KOG0582|consen 120 PDGLEEASIATILREVLKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCW 196 (516)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccc
Confidence 234788888999999999999999 7789999999999999999999999999876554322110 01111
Q ss_pred -------------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 539 -------------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 539 -------------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+|+|+| | +|..|+.....-.+-+ .-.....|.......|.+ ....-
T Consensus 197 mAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl-~tLqn~pp~~~t~~~~~d----------~~k~~ 265 (516)
T KOG0582|consen 197 MAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLL-LTLQNDPPTLLTSGLDKD----------EDKKF 265 (516)
T ss_pred cChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHH-HHhcCCCCCcccccCChH----------Hhhhh
Confidence 2278888 6 7777776533222211 111111111111111111 11111
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
-..+-+..-.|++.||++|||+.+.++
T Consensus 266 ~ksf~e~i~~CL~kDP~kRptAskLlk 292 (516)
T KOG0582|consen 266 SKSFREMIALCLVKDPSKRPTASKLLK 292 (516)
T ss_pred cHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 225666777999999999999998764
|
|
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=174.66 Aligned_cols=198 Identities=28% Similarity=0.483 Sum_probs=133.8
Q ss_pred CCcCcceEEEecCC------ceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQDG------MKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~g------~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++..... ..+++|.+..... .....|..|+..++ .+++||+++|+|
T Consensus 16 G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L 95 (283)
T cd05048 16 GAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDL 95 (283)
T ss_pred ccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcH
Confidence 46889999886432 5789998764332 22345566665533 267899999999
Q ss_pred hhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 460 EKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 460 ~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.+++.... ..+++.....++.+++.|++||| ..+++||||||+||++++++.++++|||+++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~ 172 (283)
T cd05048 96 HEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFGLSR 172 (283)
T ss_pred HHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccccceEEEcCCCcEEECCCccee
Confidence 98875421 35788899999999999999999 6689999999999999999999999999998
Q ss_pred cccccCCC--c-----------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCccee
Q 041082 525 LLLKEDQS--F-----------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEV 577 (639)
Q Consensus 525 ~~~~~~~~--~-----------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (639)
........ . +. ...+.++||| | | |+.|..... ...+.+++.. .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~--~~~~~~~i~~---~----- 242 (283)
T cd05048 173 DIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS--NQEVIEMIRS---R----- 242 (283)
T ss_pred eccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHc---C-----
Confidence 65332210 0 00 0112256666 5 3 555543211 0111111110 0
Q ss_pred eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 578 VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 578 ~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.. ...+..+...+.+|+.+|++.+|++||++.||+++|+.
T Consensus 243 ----~~------~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 243 ----QL------LPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred ----Cc------CCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 00 01123445678889999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=172.99 Aligned_cols=200 Identities=23% Similarity=0.368 Sum_probs=134.1
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... ....+++|.+..... .....+..|+..++ .+++||+++|+|
T Consensus 11 g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 90 (290)
T cd05045 11 GEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 90 (290)
T ss_pred cCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCH
Confidence 568899998753 225688887653321 22345555655533 267899999999
Q ss_pred hhccccC-----------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSS-----------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+++... ...++|.+...++.+++.|++||| ..+++||||||+||++++++.+|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~~~~~~k 167 (290)
T cd05045 91 RSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMK 167 (290)
T ss_pred HHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEcCCCcEE
Confidence 9876531 124789999999999999999999 67899999999999999999999
Q ss_pred eccccccccccccCCC-------------ccc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQS-------------FTQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~-------------~~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
++|||+++........ .+. ...+.++||| | | |+.|.... ....+++++...
T Consensus 168 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~ 245 (290)
T cd05045 168 ISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI--APERLFNLLKTG 245 (290)
T ss_pred eccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHhCC
Confidence 9999999765322110 000 1122367888 6 5 66665421 111122222111
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.. + ..+..+...+.+++..|++.+|++||+|.||+++|+++-
T Consensus 246 ~~--------~----------~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 246 YR--------M----------ERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred CC--------C----------CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 00 0 001122345778899999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=177.38 Aligned_cols=202 Identities=21% Similarity=0.323 Sum_probs=129.9
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|||.+..... .....+..|+..+. .+++||+++|
T Consensus 18 G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g 97 (343)
T cd05103 18 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 97 (343)
T ss_pred CccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCCC
Confidence 56899999863 3467899999864321 12233334443321 2578999999
Q ss_pred CchhccccC------------------------------------------------------------------CccCC
Q 041082 458 SLEKCLYSS------------------------------------------------------------------NYILD 471 (639)
Q Consensus 458 sL~~~l~~~------------------------------------------------------------------~~~l~ 471 (639)
+|.++++.. ...++
T Consensus 98 ~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (343)
T cd05103 98 NLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLT 177 (343)
T ss_pred cHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCC
Confidence 998877531 02368
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------------cc---
Q 041082 472 IFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------------TQ--- 535 (639)
Q Consensus 472 ~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------------~~--- 535 (639)
|.++.+++.++++|++||| +.+|+||||||+||+++.++.+|++|||+++......... +.
T Consensus 178 ~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 254 (343)
T cd05103 178 LEDLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 254 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhc
Confidence 8899999999999999999 6789999999999999999999999999998653221100 00
Q ss_pred -cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHH
Q 041082 536 -NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604 (639)
Q Consensus 536 -~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~ 604 (639)
...+.++|+| | + |..|....... ..+ .. ...... . ...+......+.+++
T Consensus 255 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~---~~-~~~~~~--------~------~~~~~~~~~~~~~~~ 315 (343)
T cd05103 255 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEF---CR-RLKEGT--------R------MRAPDYTTPEMYQTM 315 (343)
T ss_pred CCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-HHH---HH-HHhccC--------C------CCCCCCCCHHHHHHH
Confidence 0112245665 4 2 44443321000 000 00 000000 0 000011123578899
Q ss_pred hhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 605 MECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 605 ~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
..|++.+|++||+|.||++.|+.+.+
T Consensus 316 ~~cl~~~p~~Rps~~eil~~l~~~~~ 341 (343)
T cd05103 316 LDCWHGEPSQRPTFSELVEHLGNLLQ 341 (343)
T ss_pred HHHccCChhhCcCHHHHHHHHHHHHh
Confidence 99999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=186.56 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=133.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHH----------------------------HhhhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMM----------------------------KKLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~----------------------------~~Lv~ey~~ 455 (639)
.++|.||++.. .+|..+|+|.++.... .....+..|+..+ ..+|+||++
T Consensus 43 G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~ 122 (496)
T PTZ00283 43 GATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYAN 122 (496)
T ss_pred CCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCC
Confidence 46899999875 5689999999865432 1222334444331 137899999
Q ss_pred CCCchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC
Q 041082 456 HGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532 (639)
Q Consensus 456 ~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~ 532 (639)
+|+|.+++.. ....+++.....++.+++.||+|+| ..+|+||||||+||+++.++.+||+|||+++.+......
T Consensus 123 ~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~ 199 (496)
T PTZ00283 123 AGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSD 199 (496)
T ss_pred CCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccc
Confidence 9999998864 2345888889999999999999999 778999999999999999999999999999865432110
Q ss_pred -------cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 533 -------FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 533 -------~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
.+ ....+.++||| | ||+.|... ....+++........ ..+
T Consensus 200 ~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~-----~~~~~~~~~~~~~~~-~~~-------- 265 (496)
T PTZ00283 200 DVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG-----ENMEEVMHKTLAGRY-DPL-------- 265 (496)
T ss_pred cccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHhcCCC-CCC--------
Confidence 00 00122367777 5 77777642 222333322221110 000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+......+.+++..|++.+|++||++.+++..
T Consensus 266 ------~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 266 ------PPSISPEMQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred ------CCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence 11223356778899999999999999999763
|
|
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=170.18 Aligned_cols=202 Identities=21% Similarity=0.321 Sum_probs=135.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+++|.+.... ......+..|+..++ .+++||+++++|.++
T Consensus 13 g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~ 92 (267)
T cd08229 13 GQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRM 92 (267)
T ss_pred cCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHH
Confidence 45788999885 578899999775422 222345555555532 267899999999988
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
+.. ....++|.+...++.+++.|++||| ..+++|+||||+||+++.++.++++|||+++.........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 169 (267)
T cd08229 93 IKHFKKQKRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT 169 (267)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCC
Confidence 753 2345899999999999999999999 6789999999999999999999999999987654322110
Q ss_pred -----cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 -----TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+. ...+.++|+| | +|..|... ......++.... .+...+.+. ...
T Consensus 170 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~---~~~~~~~~~~~~-----~~~~~~~~~---------~~~ 232 (267)
T cd08229 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG---DKMNLYSLCKKI-----EQCDYPPLP---------SDH 232 (267)
T ss_pred cCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCccc---ccchHHHHhhhh-----hcCCCCCCC---------ccc
Confidence 00 1112256666 5 56655431 111111111110 001011110 112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
....+.+++.+|++.+|++||||.+|+++++++
T Consensus 233 ~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 233 YSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred ccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 334577888899999999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=172.33 Aligned_cols=200 Identities=28% Similarity=0.428 Sum_probs=130.7
Q ss_pred CCcCcceEEEecC-Cc--eeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-GM--KVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~--~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... +. .+++|.+.... ......+..|++... .+++||+++|+|.+
T Consensus 6 g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (270)
T cd05047 6 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLD 85 (270)
T ss_pred CCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHH
Confidence 5688999998754 32 46778765322 222345555555422 26899999999998
Q ss_pred ccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+++... ..+++.++..++.+++.|++||| ..+++||||||+||++++++.+|++|||+++..
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~ 162 (270)
T cd05047 86 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 162 (270)
T ss_pred HHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCCCcccc
Confidence 886421 24789999999999999999999 678999999999999999999999999998632
Q ss_pred cccCCC--c--------c----ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 527 LKEDQS--F--------T----QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 527 ~~~~~~--~--------~----~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
...... . + ....+.++||| | | |..|... .+..+..... +.. .
T Consensus 163 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~-----~~~~~~~~~~-~~~--------~ 228 (270)
T cd05047 163 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKL-PQG--------Y 228 (270)
T ss_pred chhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccc-----cCHHHHHHHH-hCC--------C
Confidence 211000 0 0 00112256666 4 3 5555432 1111111111 000 0
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
..+.+..+...+.+++.+|++.+|.+||++.+++++|+++.
T Consensus 229 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~ 269 (270)
T cd05047 229 ------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 269 (270)
T ss_pred ------CCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence 00011123345788999999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=174.31 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=128.2
Q ss_pred CCcCcceEEEecC---------------CceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhh
Q 041082 407 SGFGSIYKARIQD---------------GMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLV 450 (639)
Q Consensus 407 ~g~g~vy~~~l~~---------------g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv 450 (639)
.++|.||.+...+ ...+|+|.+.... ......|..|++.++ .+|
T Consensus 16 G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv 95 (295)
T cd05097 16 GQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMI 95 (295)
T ss_pred CCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEE
Confidence 4578888766432 1358899876432 222345666766643 268
Q ss_pred hhcCCCCCchhccccCC-----------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecc
Q 041082 451 LEYMPHGSLEKCLYSSN-----------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSD 519 (639)
Q Consensus 451 ~ey~~~gsL~~~l~~~~-----------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~d 519 (639)
|||+++++|.+++.... ..++|.++.+++.++++|++||| ..+++||||||+||++++++.+|++|
T Consensus 96 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nill~~~~~~kl~d 172 (295)
T cd05097 96 TEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLA---SLNFVHRDLATRNCLVGNHYTIKIAD 172 (295)
T ss_pred EecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHH---hcCeeccccChhhEEEcCCCcEEecc
Confidence 99999999998875321 23789999999999999999999 67899999999999999999999999
Q ss_pred ccccccccccCCCc--cc---------------cccccccccccCCCCCCCccCCCccchHHHHHh--hCCCCc---cee
Q 041082 520 FGMAKLLLKEDQSF--TQ---------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVND--LLPISV---MEV 577 (639)
Q Consensus 520 fgla~~~~~~~~~~--~~---------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~--~~~~~~---~~~ 577 (639)
||+++.+....... .. ...+.++||| +.|..+.+.... ..|... .+.
T Consensus 173 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw-----------SlG~~l~el~~~~~~~p~~~~~~~~~ 241 (295)
T cd05097 173 FGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVW-----------AFGVTLWEMFTLCKEQPYSLLSDEQV 241 (295)
T ss_pred cccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHH-----------HHHHHHHHHHHcCCCCCCcccChHHH
Confidence 99997653322100 00 0012245555 333333222210 001000 000
Q ss_pred e-------eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 578 V-------DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 578 ~-------d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+ +...... ....+......+.+++.+|++.+|++||+|.+|++.|+
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 242 IENTGEFFRNQGRQI---YLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred HHHHHHhhhhccccc---cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 0 0000000 00001122357889999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=171.94 Aligned_cols=197 Identities=23% Similarity=0.382 Sum_probs=131.1
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhhh-hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYER-AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~~-~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++...+ +..+|+|.+...... ....+..|....+. +++||+++++|
T Consensus 16 G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l 95 (283)
T cd05091 16 DRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDL 95 (283)
T ss_pred CCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcH
Confidence 4688999998643 478999998744322 22345555555322 46789999999
Q ss_pred hhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 460 EKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 460 ~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.+++... ...+++..+.+++.++++||+|+| ..+|+||||||.||++++++.+|++|||+++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 172 (283)
T cd05091 96 HEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLNVKISDLGLFR 172 (283)
T ss_pred HHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCceEeccccccc
Confidence 8887421 134788889999999999999999 6789999999999999999999999999988
Q ss_pred cccccCCCc-------------c----ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCccee
Q 041082 525 LLLKEDQSF-------------T----QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEV 577 (639)
Q Consensus 525 ~~~~~~~~~-------------~----~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (639)
.+....... + ....+.++||| | | |..|... ....++..........
T Consensus 173 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~-----~~~~~~~~~i~~~~~~-- 245 (283)
T cd05091 173 EVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCG-----YSNQDVIEMIRNRQVL-- 245 (283)
T ss_pred ccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHcCCcC--
Confidence 654322100 0 00112256666 5 3 4444321 1111222211111100
Q ss_pred eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 578 VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 578 ~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+..+...+.+++..|++.+|++||+|.+|+++|+
T Consensus 246 -------------~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 246 -------------PCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred -------------CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence 011234455788999999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=171.27 Aligned_cols=197 Identities=24% Similarity=0.393 Sum_probs=137.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++...++..+++|.+..... ....+..|+..++ .++|||+++++|.++++..
T Consensus 17 g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~ 95 (260)
T cd05070 17 GQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGE 95 (260)
T ss_pred ccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCCcHHHHHHhcC
Confidence 568899999988888899998865332 2345666665533 3789999999999988753
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------------~ 534 (639)
...+++.++.+++.+++.|++||| ..+++||||||+||++++++.++++|||+++......... +
T Consensus 96 ~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP 172 (260)
T cd05070 96 GRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAP 172 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccCh
Confidence 345899999999999999999999 6679999999999999999999999999997654322110 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | | |+.|..+. ......++.....+ .+.+......+
T Consensus 173 E~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 232 (260)
T cd05070 173 EAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM--NNREVLEQVERGYR------------------MPCPQDCPISL 232 (260)
T ss_pred HHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCcCCHHH
Confidence 0 0112256777 5 4 55554321 11111111110000 00112233467
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.+++.+|+..+|++||||.++.+.|+.
T Consensus 233 ~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 233 HELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 889999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=173.76 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=132.7
Q ss_pred CCcCcceEEEec-CCc--eeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM--KVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~--~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++. .+++|.+.... ......+..|+..+. .+|+||+++|+|.+
T Consensus 18 G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 97 (303)
T cd05088 18 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLD 97 (303)
T ss_pred CCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHH
Confidence 468899999864 343 45777654322 222345555655422 26789999999999
Q ss_pred ccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+++... ..+++.++..++.+++.|++||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~ 174 (303)
T cd05088 98 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 174 (303)
T ss_pred HHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH---hCCccccccchheEEecCCCcEEeCccccCccc
Confidence 886421 25789999999999999999999 678999999999999999999999999998643
Q ss_pred cccCCCccc--cccccccccc-cCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeeccccccccccccchHHHHHH
Q 041082 527 LKEDQSFTQ--NTNTCHHRIY-GTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 527 ~~~~~~~~~--~~~~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
......... ........++ +....+..|+|+.|..+.+.+. ...|.. ..+.++...... ..+.+......
T Consensus 175 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 251 (303)
T cd05088 175 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGY---RLEKPLNCDDE 251 (303)
T ss_pred chhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCC---cCCCCCCCCHH
Confidence 211100000 0000000010 1111222344444444444432 222211 001110000000 00011122345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+.+++.+|++.+|++||++.+++++++++...-
T Consensus 252 ~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~ 284 (303)
T cd05088 252 VYDLMRQCWREKPYERPSFAQILVSLNRMLEER 284 (303)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 778999999999999999999999999876543
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=181.48 Aligned_cols=217 Identities=22% Similarity=0.311 Sum_probs=153.1
Q ss_pred CcCcceEEEe-cCC----ceeeeEEechhh-hhhhhhHHHHHHHH-------------------HhhhhhcCCCCCchhc
Q 041082 408 GFGSIYKARI-QDG----MKVAVKVFDLQY-ERAFKSFDVACDMM-------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 408 g~g~vy~~~l-~~g----~~vavK~l~~~~-~~~~~~f~~e~~~~-------------------~~Lv~ey~~~gsL~~~ 462 (639)
.||.||+|.+ +.| .+||+|++.... .+...++..+.-.| -.||.+|||.|.|.++
T Consensus 708 AfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP~G~LlDy 787 (1177)
T KOG1025|consen 708 AFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMPLGCLLDY 787 (1177)
T ss_pred cceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcccchHHHH
Confidence 4899999986 554 578888875332 22334444443332 2478999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC-- 540 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~-- 540 (639)
++.++..+.-...+.+..|||+||.||| ...++||||-++|||+..-..+||.|||+|+++..+..+.....+..
T Consensus 788 vr~hr~~igsq~lLnw~~QIAkgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pi 864 (1177)
T KOG1025|consen 788 VREHRDNIGSQDLLNWCYQIAKGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPI 864 (1177)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCc
Confidence 9887767777778999999999999999 77899999999999999999999999999999887654321111111
Q ss_pred ccccc-c---CCCCCCCccCCCccchHHHHHh-hCCCC---cceeeeccccccccccccchHHHHHHHHHHHhhccCCCC
Q 041082 541 HHRIY-G---TRRNPQMNFFSGEMTLKSWVND-LLPIS---VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612 (639)
Q Consensus 541 ~~dvy-G---tg~~p~~~~~~~~~~l~~~~~~-~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p 612 (639)
|+-.- - -...+.+|+|+.|+.+|+.++- +-|.. ..|+=|- . +.+++...++.|...|..++++||..++
T Consensus 865 kwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dl--l-e~geRLsqPpiCtiDVy~~mvkCwmid~ 941 (1177)
T KOG1025|consen 865 KWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDL--L-EKGERLSQPPICTIDVYMVMVKCWMIDA 941 (1177)
T ss_pred HHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHH--H-hccccCCCCCCccHHHHHHHHHHhccCc
Confidence 00000 0 1123555667777777776643 22332 2233221 1 1112345678899999999999999999
Q ss_pred CCCCCHHHHHHHHHHhHH
Q 041082 613 KQRINAKESVTRLLKIRD 630 (639)
Q Consensus 613 ~~RP~m~~v~~~l~~~~~ 630 (639)
+.||++++...+..++..
T Consensus 942 ~~rp~fkel~~~fs~~ar 959 (1177)
T KOG1025|consen 942 DSRPTFKELAEEFSRMAR 959 (1177)
T ss_pred ccCccHHHHHHHHHHHhc
Confidence 999999999998887643
|
|
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-18 Score=174.18 Aligned_cols=203 Identities=24% Similarity=0.385 Sum_probs=132.4
Q ss_pred CCcCcceEEEecC-C--ceeeeEEechh-hhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-G--MKVAVKVFDLQ-YERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g--~~vavK~l~~~-~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... + ..+++|.+... .......+..|+.... .+++||+++|+|.+
T Consensus 13 g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 92 (297)
T cd05089 13 GNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLD 92 (297)
T ss_pred CCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCCCcHHH
Confidence 5689999998753 3 24677776532 1222344555554421 26789999999998
Q ss_pred ccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+++... ..+++....+++.+++.|++||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~ 169 (297)
T cd05089 93 FLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLSRGE 169 (297)
T ss_pred HHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeEEECCcCCCccc
Confidence 886421 24788999999999999999999 678999999999999999999999999998643
Q ss_pred cccCCC--c--------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 527 LKEDQS--F--------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 527 ~~~~~~--~--------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
...... . +. ...+.++||| | | |+.|.... ...++.... ....
T Consensus 170 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~-----~~~~~~~~~---------~~~~ 235 (297)
T cd05089 170 EVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM-----TCAELYEKL---------PQGY 235 (297)
T ss_pred cceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHHH---------hcCC
Confidence 211000 0 00 0112256666 4 3 44444311 111111110 0000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
. ...+..+...+.+++.+|++.+|.+||++.+|+++|+.+.+..
T Consensus 236 ~------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~ 279 (297)
T cd05089 236 R------MEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR 279 (297)
T ss_pred C------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 0 0011123345778999999999999999999999999887655
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=170.87 Aligned_cols=197 Identities=22% Similarity=0.368 Sum_probs=136.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcccc-C
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYS-S 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~-~ 466 (639)
.++|.||++...++..+++|.+...... ...+..|+..++ .+++||+++|+|.+++.. .
T Consensus 17 G~~g~v~~~~~~~~~~~a~K~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~ 95 (260)
T cd05067 17 GQFGEVWMGYYNGHTKVAIKSLKQGSMS-PEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPE 95 (260)
T ss_pred CccceEEeeecCCCceEEEEEecCCCCc-HHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCCCHHHHHHhcC
Confidence 5688999999888999999998754332 345666665543 368899999999998865 3
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------c------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------T------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------~------ 534 (639)
...+++.++..++.+++.||+||| ..+++||||||+||+++.++.++++|||+++......... +
T Consensus 96 ~~~~~~~~~~~i~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~p 172 (260)
T cd05067 96 GIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 172 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCH
Confidence 346899999999999999999999 6789999999999999999999999999997655221110 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++|+| | | |+.|..+. ....+.+....... .+.+......+
T Consensus 173 e~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 232 (260)
T cd05067 173 EAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM--TNPEVIQNLERGYR------------------MPRPDNCPEEL 232 (260)
T ss_pred HHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHcCCC------------------CCCCCCCCHHH
Confidence 0 0112245666 4 4 55554321 01111111100000 00011123458
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.+++.+|+..+|++||++.++...|+.
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 233 YELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 889999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-18 Score=171.09 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=136.1
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++...+. ..+++|...... ......+..|+..++ .+|+||+++|+|.++
T Consensus 17 g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~ 96 (270)
T cd05056 17 GQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLGELRSY 96 (270)
T ss_pred ccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCCCcHHHH
Confidence 56889999886432 468888775443 233345666666533 368899999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-cc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FT------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~------- 534 (639)
+......++|.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++........ .+
T Consensus 97 l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~ 173 (270)
T cd05056 97 LQVNKYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIK 173 (270)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCcccc
Confidence 8764456899999999999999999999 678999999999999999999999999999865433211 00
Q ss_pred ----c----cccccccccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ----Q----NTNTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ----~----~~~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++||| | +|+.|..... ......+.... . ....+..+
T Consensus 174 y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~--~~~~~~~~~~~--~----------------~~~~~~~~ 233 (270)
T cd05056 174 WMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK--NNDVIGRIENG--E----------------RLPMPPNC 233 (270)
T ss_pred ccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHcC--C----------------cCCCCCCC
Confidence 0 0011245555 3 2444432211 00111111100 0 00111233
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
...+.+++.+|+..+|++||++.+++..|+.++.
T Consensus 234 ~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~ 267 (270)
T cd05056 234 PPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ 267 (270)
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 4467788899999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=161.23 Aligned_cols=117 Identities=28% Similarity=0.356 Sum_probs=90.5
Q ss_pred CcCcceEEEec-CCceeeeEEechhhh-hhhhh-HHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKS-FDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~-f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+|.||+++-. .|+.||||++-.+.. ...+. ..+|+++++ +||+||++..-|.++ .
T Consensus 14 SYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dhTvL~eL-e 92 (396)
T KOG0593|consen 14 SYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDHTVLHEL-E 92 (396)
T ss_pred cceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecchHHHHHH-H
Confidence 47899999875 489999999865432 22222 234555533 279999988544433 2
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.....++.....++..++++|+.|.| +..++||||||.|||+..++.+|+||||+||.+..
T Consensus 93 ~~p~G~~~~~vk~~l~Q~l~ai~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~ 153 (396)
T KOG0593|consen 93 RYPNGVPSELVKKYLYQLLKAIHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA 153 (396)
T ss_pred hccCCCCHHHHHHHHHHHHHHhhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcC
Confidence 22334777888999999999999999 78899999999999999999999999999999873
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-19 Score=178.81 Aligned_cols=214 Identities=22% Similarity=0.314 Sum_probs=142.2
Q ss_pred cCcceEEEecCCceeeeEEechhhhhhhhhHHH-----------HHHH--HHhhhhhcCCCCCchhccccCCccCCHHHH
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDV-----------ACDM--MKKLVLEYMPHGSLEKCLYSSNYILDIFQR 475 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~-----------e~~~--~~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~ 475 (639)
-|.||.|.+. +..||||+++.......+.... .|.. .-.+||||++.|-|+..|+... .+.....
T Consensus 137 QGAVF~Grl~-netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~-~itp~ll 214 (904)
T KOG4721|consen 137 QGAVFLGRLH-NETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGR-PITPSLL 214 (904)
T ss_pred ccceeeeecc-CceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccC-ccCHHHH
Confidence 4779999987 5689999876443322222111 0000 1137999999999999998654 4566667
Q ss_pred HHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccccccc---cccc-cCCCCC
Q 041082 476 LNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH---HRIY-GTRRNP 551 (639)
Q Consensus 476 ~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~---~dvy-Gtg~~p 551 (639)
+.+..+||.||.||| ...|||||||+-|||+..+-.+||+|||-++.+.+.....+ ..+|.. ..|- -..-..
T Consensus 215 v~Wsk~IA~GM~YLH---~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMS-FaGTVaWMAPEvIrnePcsE 290 (904)
T KOG4721|consen 215 VDWSKGIAGGMNYLH---LHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMS-FAGTVAWMAPEVIRNEPCSE 290 (904)
T ss_pred HHHHHHhhhhhHHHH---HhhHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhh-hhhhHhhhCHHHhhcCCccc
Confidence 888899999999999 78899999999999999999999999999987765432111 111210 0000 011112
Q ss_pred CCccCCCccchHHHHHhhCCCC-cce--e---eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 552 QMNFFSGEMTLKSWVNDLLPIS-VME--V---VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 552 ~~~~~~~~~~l~~~~~~~~~~~-~~~--~---~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
.-|+|+.|+.||+..+.-+|.. +.. + |-.+... ...+.+|...+.-|+.+||+..|+.||++++|+..|
T Consensus 291 KVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~-----LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hl 365 (904)
T KOG4721|consen 291 KVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLH-----LPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHL 365 (904)
T ss_pred ccceehhHHHHHHHHhcCCCccccchheeEEeccCCccc-----ccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 2344667777777776666653 111 0 1111111 123567777888888999999999999999999988
Q ss_pred HHhHHHHH
Q 041082 626 LKIRDLLL 633 (639)
Q Consensus 626 ~~~~~~~~ 633 (639)
.-....++
T Consensus 366 dIa~pell 373 (904)
T KOG4721|consen 366 DIASPELL 373 (904)
T ss_pred hhcCHHHh
Confidence 76655443
|
|
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=172.69 Aligned_cols=197 Identities=28% Similarity=0.449 Sum_probs=134.2
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++...+ +..+++|.+...... ....+..|+++++ .+|+||+++|+|
T Consensus 16 g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L 95 (280)
T cd05049 16 GAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDL 95 (280)
T ss_pred cCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCH
Confidence 4678899987643 378999998654433 3456777776643 267999999999
Q ss_pred hhccccC-------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 460 EKCLYSS-------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 460 ~~~l~~~-------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.+++... ...++|.+...++.+++.|++||| ..+++||||||+||+++.++.++++|||+++..
T Consensus 96 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~ 172 (280)
T cd05049 96 NKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDV 172 (280)
T ss_pred HHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCeEEECCcccceec
Confidence 9988642 234789999999999999999999 668999999999999999999999999999765
Q ss_pred cccCCC--cc-----------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeee
Q 041082 527 LKEDQS--FT-----------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579 (639)
Q Consensus 527 ~~~~~~--~~-----------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d 579 (639)
...... .. . ...+.++||| | | |+.|.... ....+.+++.. .. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~--~~~~~~~~~~~---~~-~~--- 243 (280)
T cd05049 173 YTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL--SNEEVIECITQ---GR-LL--- 243 (280)
T ss_pred ccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHc---CC-cC---
Confidence 332210 00 0 0112246666 4 4 55554321 11111111110 00 00
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+......+.+++.+|++.+|++||++.||+++|+
T Consensus 244 -----------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 244 -----------QRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred -----------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 001123346788999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=172.56 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=116.7
Q ss_pred ceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccCCccCCHHHHHHHHH
Q 041082 421 MKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMI 480 (639)
Q Consensus 421 ~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~ 480 (639)
..+++|.++.........|..+...++ .+|+||+++|+|..++......+++..+.+++.
T Consensus 45 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~ 124 (274)
T cd05076 45 LRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQ 124 (274)
T ss_pred eeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHH
Confidence 458888887655444445555554432 378999999999988876455688999999999
Q ss_pred HHHHhhhhhhccCCCCeEeecCCCCceeecCCc-------ceeeccccccccccccCCC-------ccc-----cccccc
Q 041082 481 DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-------VAHLSDFGMAKLLLKEDQS-------FTQ-----NTNTCH 541 (639)
Q Consensus 481 ~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-------~~~i~dfgla~~~~~~~~~-------~~~-----~~~~~~ 541 (639)
++|+||+||| ..+|+||||||+||++++++ .++++|||+++........ .+. ...+.+
T Consensus 125 qi~~~l~~lH---~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~ 201 (274)
T cd05076 125 QLASALSYLE---DKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTA 201 (274)
T ss_pred HHHHHHHHHH---cCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcH
Confidence 9999999999 66899999999999997643 4799999988654322110 000 011224
Q ss_pred cccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCC
Q 041082 542 HRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAES 611 (639)
Q Consensus 542 ~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~ 611 (639)
+||| | +|+.|...... .....+ ++.... .+......+.+++.+|++.+
T Consensus 202 ~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~------------~~~~~~--------~~~~~~~~~~~li~~cl~~~ 259 (274)
T cd05076 202 ADKWSFGTTLLEICFDGEVPLKERTP--SEKERF------------YEKKHR--------LPEPSCKELATLISQCLTYE 259 (274)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCh--HHHHHH------------HHhccC--------CCCCCChHHHHHHHHHcccC
Confidence 5555 4 24433321100 000000 000000 00011235778999999999
Q ss_pred CCCCCCHHHHHHHH
Q 041082 612 PKQRINAKESVTRL 625 (639)
Q Consensus 612 p~~RP~m~~v~~~l 625 (639)
|++||+|.+|++.|
T Consensus 260 p~~Rps~~~il~~L 273 (274)
T cd05076 260 PTQRPSFRTILRDL 273 (274)
T ss_pred hhhCcCHHHHHHhh
Confidence 99999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-18 Score=174.24 Aligned_cols=116 Identities=26% Similarity=0.282 Sum_probs=93.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 4 G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~ 83 (312)
T cd05585 4 GSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHH 83 (312)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHH
Confidence 468899998865 578899999865432 22234445555432 368999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.....++.++++||+||| +.+|+||||||+||+++.++.++|+|||+++..
T Consensus 84 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~ 143 (312)
T cd05585 84 LQRE-GRFDLSRARFYTAELLCALENLH---KFNVIYRDLKPENILLDYQGHIALCDFGLCKLN 143 (312)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHeEECCCCcEEEEECcccccC
Confidence 8653 35889999999999999999999 678999999999999999999999999999864
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=180.00 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--ccccc---cccc
Q 041082 469 ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT--QNTNT---CHHR 543 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~--~~~~~---~~~d 543 (639)
.++|..+.+++.++|+|++||| ..+|+||||||+||+++.++.+|++|||+++.......... ....+ ....
T Consensus 233 ~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE 309 (400)
T cd05105 233 GLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPE 309 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChh
Confidence 4788889999999999999999 67899999999999999999999999999986543221100 00000 0000
Q ss_pred cc-cCCCCCCCccCCCccchHHHHH-hhCCCCc---ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCH
Q 041082 544 IY-GTRRNPQMNFFSGEMTLKSWVN-DLLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 544 vy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m 618 (639)
++ |....+..|+|+.|..+.+... ...|... .+.+-..+... .....+..+...+.+++.+|++.+|++||+|
T Consensus 310 ~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~ 387 (400)
T cd05105 310 SIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSG--YRMAKPDHATQEVYDIMVKCWNSEPEKRPSF 387 (400)
T ss_pred hhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcC--CCCCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence 01 1111222333333443333321 1112110 00000000000 0011122344568889999999999999999
Q ss_pred HHHHHHHHHhH
Q 041082 619 KESVTRLLKIR 629 (639)
Q Consensus 619 ~~v~~~l~~~~ 629 (639)
.+|+++|+++.
T Consensus 388 ~~l~~~l~~l~ 398 (400)
T cd05105 388 LHLSDIVESLL 398 (400)
T ss_pred HHHHHHHHHHc
Confidence 99999998753
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=168.77 Aligned_cols=193 Identities=25% Similarity=0.356 Sum_probs=132.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+++|.++... ......+..++..++ .+|+||+++++|.+++.
T Consensus 15 g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 94 (277)
T cd06642 15 GSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLK 94 (277)
T ss_pred CCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhh
Confidence 467899999764 57889999876433 222345555655532 37899999999998886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
. ..+++.....++.++++|++||| ..+++|+||+|+||+++.++.++++|||+++.+.......
T Consensus 95 ~--~~~~~~~~~~~~~~i~~~l~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a 169 (277)
T cd06642 95 P--GPLEETYIATILREILKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 169 (277)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccC
Confidence 4 35889999999999999999999 6789999999999999999999999999997654322100
Q ss_pred c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 534 T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 534 ~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
+ ....+.++||| | ||+.|..+.... ....++ ... ..+.+ ...+...+
T Consensus 170 PE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~----~~~----~~~~~----------~~~~~~~~ 229 (277)
T cd06642 170 PEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM--RVLFLI----PKN----SPPTL----------EGQYSKPF 229 (277)
T ss_pred HHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh--hHHhhh----hcC----CCCCC----------CcccCHHH
Confidence 0 00112367777 5 666665432111 000010 000 00111 11234457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++.+|++.+|++||+|.+|+++
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 230 KEFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred HHHHHHHccCCcccCcCHHHHHHh
Confidence 788999999999999999999973
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-18 Score=168.99 Aligned_cols=196 Identities=22% Similarity=0.321 Sum_probs=131.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
+++|.||++... ++..+++|.+..........+..|+.+++ .+++||+++++|.+++..
T Consensus 19 g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 98 (268)
T cd06624 19 GTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRS 98 (268)
T ss_pred CCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHH
Confidence 468899999854 56789999887665555556666666633 268899999999998875
Q ss_pred CCccC--CHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC----------
Q 041082 466 SNYIL--DIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 466 ~~~~l--~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
....+ ++..+..++.++++|++||| ..+|+||||||+||+++. ++.++++|||++.........
T Consensus 99 ~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~ 175 (268)
T cd06624 99 KWGPLKDNEQTIIFYTKQILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQY 175 (268)
T ss_pred hcccCCCcHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccc
Confidence 43345 78888999999999999999 678999999999999986 679999999998765322110
Q ss_pred -ccc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 -FTQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 -~~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+. ...+.++||| | +|+.|....- ......|...... ..+ ..+...
T Consensus 176 ~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~--~~~~~~~~~~~~~------~~~----------~~~~~~ 237 (268)
T cd06624 176 MAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELG--EPQAAMFKVGMFK------IHP----------EIPESL 237 (268)
T ss_pred cChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCcccc--ChhhhHhhhhhhc------cCC----------CCCccc
Confidence 000 0012356666 5 5665543210 0000111000000 000 011122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++||+|.|+++
T Consensus 238 ~~~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 238 SAEAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred CHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence 345677889999999999999999875
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-18 Score=168.47 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... ++..+++|.+.... ......+..++..++ .+|+||+++++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 90 (256)
T cd08529 11 GSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLL 90 (256)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHH
Confidence 457889999864 57899999886542 222344555555432 3689999999999998
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+.. ...+++.+..+++.+++.|++||| ..+++|||||++||+++.++.++++|||+++.+.........
T Consensus 91 ~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y 167 (256)
T cd08529 91 KMQRGRPLPEDQVWRFFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYY 167 (256)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccc
Confidence 763 456899999999999999999999 678999999999999999999999999998866433211000
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++|+| | ||+.|.... .......++ .... . .........
T Consensus 168 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~---~~~~----~-----------~~~~~~~~~ 227 (256)
T cd08529 168 LSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDAN--NQGALILKI---IRGV----F-----------PPVSQMYSQ 227 (256)
T ss_pred cCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC--CHHHHHHHH---HcCC----C-----------CCCccccCH
Confidence 0112256666 4 555554321 001111111 0000 0 000112334
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||+|.++++.
T Consensus 228 ~~~~~i~~~l~~~p~~Rp~~~~ll~~ 253 (256)
T cd08529 228 QLAQLIDQCLTKDYRQRPDTFQLLRN 253 (256)
T ss_pred HHHHHHHHHccCCcccCcCHHHHhhC
Confidence 67889999999999999999999863
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=174.53 Aligned_cols=208 Identities=26% Similarity=0.336 Sum_probs=133.7
Q ss_pred CCcCcceEEEecC--------CceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQD--------GMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~~--------g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||++...+ ...+|+|.+.... ......+..++..++ .+|+||+++
T Consensus 29 G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 108 (307)
T cd05098 29 GCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 108 (307)
T ss_pred CCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCC
Confidence 4588899886432 2468999886432 222344555555432 268999999
Q ss_pred CCchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++... ...++|.++.+++.+++.||+||| ..+++||||||+||+++.++.+|++|||
T Consensus 109 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~dfg 185 (307)
T cd05098 109 GNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFG 185 (307)
T ss_pred CcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCCcEEECCCc
Confidence 9999988642 124899999999999999999999 6789999999999999999999999999
Q ss_pred ccccccccCCC-----cc--------c----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeec
Q 041082 522 MAKLLLKEDQS-----FT--------Q----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDV 580 (639)
Q Consensus 522 la~~~~~~~~~-----~~--------~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~ 580 (639)
+++........ .. . ...+.++||| +-|..+.+++. ...|.. ..++++.
T Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw-----------slG~~l~el~~~g~~p~~~~~~~~~~~~ 254 (307)
T cd05098 186 LARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVW-----------SFGVLLWEIFTLGGSPYPGVPVEELFKL 254 (307)
T ss_pred ccccccccchhhccccCCCccceeChHHhccCCCCcHHHHH-----------HHHHHHHHHHcCCCCCCCcCCHHHHHHH
Confidence 99765422110 00 0 0012245555 33333333221 111110 0000000
Q ss_pred cccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 581 NLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+... ...+.+..+...+.+++.+|++.+|++||+|.+|++.|.++...
T Consensus 255 -~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~ 302 (307)
T cd05098 255 -LKEG--HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL 302 (307)
T ss_pred -HHcC--CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence 0000 00011223345677899999999999999999999999988654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=173.60 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=136.3
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhhh-hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQYE-RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .|. .+++|.+..... .....+..++..++ .++++|+++|+|.+
T Consensus 18 G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~g~l~~ 97 (303)
T cd05110 18 GAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLD 97 (303)
T ss_pred CCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCCCCHHH
Confidence 457899999763 343 468887754322 11224445554432 26889999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--cc-----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FT----- 534 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~----- 534 (639)
++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~ 174 (303)
T cd05110 98 YVHEHKDNIGSQLLLNWCVQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMP 174 (303)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHh---hcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccc
Confidence 88765556899999999999999999999 678999999999999999999999999999865432210 00
Q ss_pred ------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 535 ------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 535 ------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
. ...+.++||| | | |+.|..... ...+.+++.... .. ..+.
T Consensus 175 ~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~--~~~~~~~~~~~~----------~~--------~~~~ 234 (303)
T cd05110 175 IKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP--TREIPDLLEKGE----------RL--------PQPP 234 (303)
T ss_pred cccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHCCC----------CC--------CCCC
Confidence 0 0112256777 5 3 555543210 111222221100 00 0011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+...+.+++..|+..+|++||+|.++++.+.++....
T Consensus 235 ~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~ 272 (303)
T cd05110 235 ICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDP 272 (303)
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhch
Confidence 23446788999999999999999999999999875443
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=172.80 Aligned_cols=197 Identities=21% Similarity=0.356 Sum_probs=128.6
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+.... ......+..|...++ .+|+||+++|+|
T Consensus 17 G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L 96 (277)
T cd05062 17 GSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 96 (277)
T ss_pred ccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCH
Confidence 467889987653 24679999875322 122334555555533 268999999999
Q ss_pred hhccccC---------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYSS---------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~---------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...++|.++..++.++|.|++||| ..+++||||||+||++++++.++++|||+++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~ 173 (277)
T cd05062 97 KSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 173 (277)
T ss_pred HHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCcchheEEEcCCCCEEECCCCCccccCCcc
Confidence 9887641 124688899999999999999999 6789999999999999999999999999987553322
Q ss_pred CCc-------------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF-------------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~-------------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... +. ...+.++||| | | |..|.... ...+........ ...
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~-----~~~~~~~~~~~~--------~~~ 240 (277)
T cd05062 174 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM-----SNEQVLRFVMEG--------GLL 240 (277)
T ss_pred eeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHHHHcC--------CcC
Confidence 110 00 0112245665 4 3 33333211 111111110000 000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+..+...+.+++.+|++.+|++||++.|++++|+
T Consensus 241 -------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 241 -------DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred -------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 011223446788999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-18 Score=167.76 Aligned_cols=197 Identities=25% Similarity=0.408 Sum_probs=134.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++...++..+++|.+...... ....+..+++..+ .+|+||+++++|.+++..
T Consensus 6 g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~ 85 (251)
T cd05041 6 GNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRK 85 (251)
T ss_pred CCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHh
Confidence 4678999999877899999987654332 3345666666533 268899999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----------- 534 (639)
....+++..+..++.+++.|++||| ..+++||||||+||+++.++.+|++|||+++..........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~ 162 (251)
T cd05041 86 KKNRLTVKKLLQMSLDAAAGMEYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWT 162 (251)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccC
Confidence 4456889999999999999999999 66799999999999999999999999999986542211100
Q ss_pred --c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++|+| | | |..|..... .......+ .... ....+.....
T Consensus 163 ~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~--~~~~~~~~------------~~~~------~~~~~~~~~~ 222 (251)
T cd05041 163 APEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS--NQQTRERI------------ESGY------RMPAPQLCPE 222 (251)
T ss_pred ChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC--HHHHHHHH------------hcCC------CCCCCccCCH
Confidence 0 0112245555 4 3 333332110 00000111 0000 0001122344
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.+.+++.+|+..+|++||++.|+++.|.
T Consensus 223 ~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 223 EIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred HHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 6888999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-18 Score=168.57 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=126.8
Q ss_pred CCcCcceEEEecC-------------CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhc
Q 041082 407 SGFGSIYKARIQD-------------GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEY 453 (639)
Q Consensus 407 ~g~g~vy~~~l~~-------------g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey 453 (639)
.++|.||++.+.. ...+++|.++.........|..++..++ .+++||
T Consensus 6 G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 85 (262)
T cd05077 6 GTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEF 85 (262)
T ss_pred CCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEec
Confidence 4578889887532 2358888876654444445555554432 368999
Q ss_pred CCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-------eeeccccccccc
Q 041082 454 MPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-------AHLSDFGMAKLL 526 (639)
Q Consensus 454 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-------~~i~dfgla~~~ 526 (639)
+++|+|..+++.....+++..+.+++.++|+|++||| +.+|+||||||.||+++.++. ++++|||++...
T Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~ 162 (262)
T cd05077 86 VEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITV 162 (262)
T ss_pred ccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh---hCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccc
Confidence 9999998888755556899999999999999999999 678999999999999986654 899999998765
Q ss_pred cccCCC-c------cc-----cccccccccccCCCCCCCccCCCccchHHHH-HhhCCCCcceeeec-cccccccccccc
Q 041082 527 LKEDQS-F------TQ-----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWV-NDLLPISVMEVVDV-NLLSMEDKYFTT 592 (639)
Q Consensus 527 ~~~~~~-~------~~-----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~-~~~~~~~~~~~~d~-~l~~~~~~~~~~ 592 (639)
...... . +. ...+.++||| +.|..+++.+ ....|.......+. ...... ...
T Consensus 163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Diw-----------slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~---~~~ 228 (262)
T cd05077 163 LSRQECVERIPWIAPECVEDSKNLSIAADKW-----------SFGTTLWEICYNGEIPLKDKTLAEKERFYEGQ---CML 228 (262)
T ss_pred cCcccccccccccChhhhcCCCCCCchhHHH-----------HHHHHHHHHHhCCCCCCCCcchhHHHHHHhcC---ccC
Confidence 432111 0 00 0011234555 3333333322 11111110000000 000000 000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
.......+.+++.+|++.+|++||++.+|++.|
T Consensus 229 ~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 229 VTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred CCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 001123567889999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-18 Score=171.93 Aligned_cols=195 Identities=24% Similarity=0.314 Sum_probs=133.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..+..+++|.+..........+..++..++ .+|+||+++|+|.+++..
T Consensus 31 g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 110 (296)
T cd06654 31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 110 (296)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHh
Confidence 45788999874 467899999987655444455655655532 378999999999998854
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
..+++.++..++.+++.|++||| ..+|+||||||+||+++.++.++|+|||+++......... +
T Consensus 111 --~~~~~~~~~~i~~ql~~aL~~LH---~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP 185 (296)
T cd06654 111 --TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185 (296)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCH
Confidence 34789999999999999999999 6689999999999999999999999999987654322110 0
Q ss_pred c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
. ...+.++||| | ||+.|....- ....+... ..... +.+. .+......+.
T Consensus 186 E~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~----~~~~~~~~-~~~~~-----~~~~--------~~~~~~~~l~ 247 (296)
T cd06654 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN----PLRALYLI-ATNGT-----PELQ--------NPEKLSAIFR 247 (296)
T ss_pred HHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCC----HHHhHHHH-hcCCC-----CCCC--------CccccCHHHH
Confidence 0 1122367888 6 7777764311 11111110 00000 0000 0111223467
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+++.+|+..+|++||++.||++.
T Consensus 248 ~li~~~l~~~p~~Rpt~~eil~~ 270 (296)
T cd06654 248 DFLNRCLDMDVEKRGSAKELLQH 270 (296)
T ss_pred HHHHHHCcCCcccCcCHHHHhhC
Confidence 78899999999999999999973
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=166.37 Aligned_cols=117 Identities=29% Similarity=0.444 Sum_probs=96.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++... .+..+++|.+..........+..|++.++ .+|+||+++|++...+..
T Consensus 16 g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~ 95 (282)
T cd06643 16 GAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLE 95 (282)
T ss_pred CCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHh
Confidence 457889999875 46788899886654444556666665533 268999999999888765
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
....++|..+..++.++++||+||| ..+++||||||+||+++.++.+|++|||+++..
T Consensus 96 ~~~~l~~~~~~~~~~qi~~~L~~LH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~ 153 (282)
T cd06643 96 LERPLTEPQIRVVCKQTLEALNYLH---ENKIIHRDLKAGNILFTLDGDIKLADFGVSAKN 153 (282)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEccCCCEEEccccccccc
Confidence 4557899999999999999999999 678999999999999999999999999998754
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-18 Score=167.96 Aligned_cols=195 Identities=22% Similarity=0.290 Sum_probs=127.9
Q ss_pred CCcCcceEEEecCCc-----------eeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQDGM-----------KVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~-----------~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~ 456 (639)
.++|.||++...... .+++|.+...... ...|..++..++ .+|+||+++
T Consensus 6 G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~ 84 (259)
T cd05037 6 GTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEYVKF 84 (259)
T ss_pred cccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEcCCC
Confidence 457889998876433 4677776544332 345555555532 268899999
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-------ceeecccccccccccc
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-------VAHLSDFGMAKLLLKE 529 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-------~~~i~dfgla~~~~~~ 529 (639)
|+|.+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++ .+|++|||+++.....
T Consensus 85 ~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~ 161 (259)
T cd05037 85 GPLDVFLHREKNNVSLHWKLDVAKQLASALHYLE---DKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR 161 (259)
T ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCCeecccCccceEEEecCccccCCceeEEeCCCCcccccccc
Confidence 9999988764446899999999999999999999 67899999999999999887 7999999999875432
Q ss_pred CCCc-------cc------cccccccccccCCCCCCCccCCCccchHHHHHh-hCCCCcce------ee-eccccccccc
Q 041082 530 DQSF-------TQ------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVND-LLPISVME------VV-DVNLLSMEDK 588 (639)
Q Consensus 530 ~~~~-------~~------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~-~~~~~~~~------~~-d~~l~~~~~~ 588 (639)
.... +. ...+.++|+| +-|..+++.+.. ..+....+ .. +.....
T Consensus 162 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~-----------slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~---- 226 (259)
T cd05037 162 EERVERIPWIAPECIRNGQASLTIAADKW-----------SFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLP---- 226 (259)
T ss_pred cccccCCCccChhhhcCCCCCcchhhHHH-----------HHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCC----
Confidence 1110 00 0112245555 333333332221 11110000 00 000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
......+.+++.+|+..+|++||+|.+|++.|
T Consensus 227 -----~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 227 -----MPDCAELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred -----CCCchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 00115678899999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-18 Score=168.00 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=132.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++.. .+..+++|....... ...+..|+..++ .+++||+++|+|.+++...
T Consensus 17 g~~g~v~~~~~-~~~~~~iK~~~~~~~--~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~ 93 (254)
T cd05083 17 GEFGAVLQGEY-TGQKVAVKNIKCDVT--AQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLVNFLRTRG 93 (254)
T ss_pred CCCCceEeccc-CCCceEEEeecCcch--HHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCCHHHHHHhcC
Confidence 46788998765 567889998754322 234555555532 2689999999999988653
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------cc---
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------TQ--- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------~~--- 535 (639)
...+++.++.+++.+++.|++||| ..+++||||||+||+++.++.+|++|||+++......... +.
T Consensus 94 ~~~~~~~~~~~~~~qi~~al~~lH---~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~ 170 (254)
T cd05083 94 RALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALK 170 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhc
Confidence 345899999999999999999999 6789999999999999999999999999987643221110 00
Q ss_pred -cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHH
Q 041082 536 -NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604 (639)
Q Consensus 536 -~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~ 604 (639)
...+.++|+| | + |+.|... ....++......... . +....+...+.+++
T Consensus 171 ~~~~~~~~Dv~slG~~l~el~~~g~~p~~~-----~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~li 230 (254)
T cd05083 171 HKKFSSKSDVWSYGVLLWEVFSYGRAPYPK-----MSLKEVKECVEKGYR---M------------EPPEGCPADVYVLM 230 (254)
T ss_pred cCCcCchhhHHHHHHHHHHHHhCCCCCCcc-----CCHHHHHHHHhCCCC---C------------CCCCcCCHHHHHHH
Confidence 1112356777 5 3 5555432 111121111100000 0 00112234567899
Q ss_pred hhccCCCCCCCCCHHHHHHHHHH
Q 041082 605 MECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 605 ~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.+|++.+|++||+|.++++.|++
T Consensus 231 ~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 231 TSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HHHcCCChhhCcCHHHHHHHHcc
Confidence 99999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=173.59 Aligned_cols=218 Identities=24% Similarity=0.291 Sum_probs=134.2
Q ss_pred CCcCcceEEEecC--------CceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQD--------GMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~~--------g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||.+.... ...+|+|.+.... ......+..|+..++ .+++||+++
T Consensus 23 G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 102 (334)
T cd05100 23 GCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASK 102 (334)
T ss_pred ccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCC
Confidence 4588899886421 2368899876432 222345556655533 257899999
Q ss_pred CCchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++... ...++|.++.+++.+++.||+||| ..+++||||||+||+++.++.+|++|||
T Consensus 103 g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~~~kL~Dfg 179 (334)
T cd05100 103 GNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADFG 179 (334)
T ss_pred CcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCcc
Confidence 9999887531 234889999999999999999999 6789999999999999999999999999
Q ss_pred ccccccccCCCc--ccccc---ccccccc-cCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeecccccccccccc
Q 041082 522 MAKLLLKEDQSF--TQNTN---TCHHRIY-GTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 522 la~~~~~~~~~~--~~~~~---~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~~~ 591 (639)
+++......... ..... ..+..++ +.......|+|+.|..+.+++. ...+.. ..+.++. +... ...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~-~~~~--~~~~ 256 (334)
T cd05100 180 LARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKL-LKEG--HRMD 256 (334)
T ss_pred cceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHH-HHcC--CCCC
Confidence 998654322110 00000 0001111 1111122333444444444332 111111 0111100 0000 0001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+..+...+.+++.+|++.+|++||+|.|+++.|+++..
T Consensus 257 ~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~ 295 (334)
T cd05100 257 KPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLT 295 (334)
T ss_pred CCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhh
Confidence 112334567889999999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=168.04 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=132.1
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+++|.+..... .....+..++..++ .+++||+++|+|
T Consensus 16 g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 95 (288)
T cd05050 16 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDL 95 (288)
T ss_pred cccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCH
Confidence 468899998753 357899998864432 22345666665533 368899999999
Q ss_pred hhccccC---------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeec
Q 041082 460 EKCLYSS---------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLS 518 (639)
Q Consensus 460 ~~~l~~~---------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~ 518 (639)
.+++... ...+++..+..++.+++.||+||| ..+++||||||+||++++++.++++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~ 172 (288)
T cd05050 96 NEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIA 172 (288)
T ss_pred HHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhheEecCCCceEEC
Confidence 9887531 124788899999999999999999 6689999999999999999999999
Q ss_pred cccccccccccCCC-------c------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCC
Q 041082 519 DFGMAKLLLKEDQS-------F------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 519 dfgla~~~~~~~~~-------~------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
|||+++.+...... . +. ...+.++||| | + |..|.. +....+++.....
T Consensus 173 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~-----~~~~~~~~~~~~~ 247 (288)
T cd05050 173 DFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYY-----GMAHEEVIYYVRD 247 (288)
T ss_pred ccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHhc
Confidence 99998765432210 0 00 0112245665 4 2 333332 1111222211111
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.. .. ..+..+...+.+++.+|++.+|++||+|.|+++.|++
T Consensus 248 ~~--------~~-------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 248 GN--------VL-------SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR 288 (288)
T ss_pred CC--------CC-------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence 11 00 0112234568889999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-18 Score=171.87 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=132.6
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... .+..+++|.+..........+..+++..+ .+++||+++|+|.
T Consensus 16 g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 95 (280)
T cd05092 16 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLN 95 (280)
T ss_pred ccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHH
Confidence 568899988532 34678888876554444556666666533 2678999999999
Q ss_pred hccccCC--------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 461 KCLYSSN--------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 461 ~~l~~~~--------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++++... ..++|.++..++.+++.|++||| ..+++||||||+||++++++.++++|||+++..
T Consensus 96 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~ 172 (280)
T cd05092 96 RFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 172 (280)
T ss_pred HHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEEECCCCceeEc
Confidence 8876421 34899999999999999999999 678999999999999999999999999999755
Q ss_pred cccCCCc-------------cc----cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeecccccc
Q 041082 527 LKEDQSF-------------TQ----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSM 585 (639)
Q Consensus 527 ~~~~~~~-------------~~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~ 585 (639)
....... +. ...+.++||| +.|..+.+++. ...|.. ..+.++....+.
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~-----------slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~ 241 (280)
T cd05092 173 YSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIW-----------SFGVVLWEIFTYGKQPWYQLSNTEAIECITQGR 241 (280)
T ss_pred CCCceeecCCCccccccccCHHHhccCCcCchhhHH-----------HHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCc
Confidence 3221100 00 0011234555 33333333332 111110 000010000000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+.+..+...+.+++.+|++.+|++||++.||.+.|+
T Consensus 242 ---~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 242 ---ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred ---cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 00111223345778999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-18 Score=167.89 Aligned_cols=198 Identities=22% Similarity=0.347 Sum_probs=136.1
Q ss_pred CCcCcceEEEecC--C--ceeeeEEechhhh-hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD--G--MKVAVKVFDLQYE-RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g--~~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... + ..+|+|.+..... ...+.+..|+..++ .+++||+++|+|.++
T Consensus 6 g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~ 85 (257)
T cd05040 6 GSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGSLLDR 85 (257)
T ss_pred cCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCcHHHH
Confidence 4678999998743 2 3689999876554 44556666666533 267899999999998
Q ss_pred cccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c------
Q 041082 463 LYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F------ 533 (639)
Q Consensus 463 l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~------ 533 (639)
+.... ..++|.....++.+++.||+||| ..+++||||||+||+++.++.+|++|||+++.+...... .
T Consensus 86 l~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~ 162 (257)
T cd05040 86 LRKDALGHFLISTLCDYAVQIANGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKV 162 (257)
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCC
Confidence 87643 46899999999999999999999 678999999999999999999999999999876542211 0
Q ss_pred ------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 ------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ...+.++||| | | |+.|.... ....+...+.. .. .. ...+
T Consensus 163 ~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--~~~~~~~~~~~---~~------~~--------~~~~ 223 (257)
T cd05040 163 PFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL--SGSQILKKIDK---EG------ER--------LERP 223 (257)
T ss_pred CceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHh---cC------Cc--------CCCC
Confidence 00 0112256666 5 4 55554321 01111111110 00 00 0011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
......+.+++.+|++.+|++||++.+|++.|.
T Consensus 224 ~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 224 EACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred ccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 223456778999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-18 Score=170.44 Aligned_cols=200 Identities=28% Similarity=0.444 Sum_probs=130.3
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+++|.+.... ......+..|+..++ .++|||+++|+|.
T Consensus 16 g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~ 95 (283)
T cd05090 16 CAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLH 95 (283)
T ss_pred cCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHH
Confidence 56899999874 245789999886322 223345666665533 2689999999999
Q ss_pred hccccC----------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 461 KCLYSS----------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 461 ~~l~~~----------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
+++... ...+++.+...++.+++.||+||| ..+++||||||+||+++.++.+|++|||+++
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~ 172 (283)
T cd05090 96 EFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQLHVKISDLGLSR 172 (283)
T ss_pred HHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hcCeehhccccceEEEcCCCcEEeccccccc
Confidence 887421 124789999999999999999999 6679999999999999999999999999997
Q ss_pred cccccCCC--ccc---------------cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC------cceeeec
Q 041082 525 LLLKEDQS--FTQ---------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS------VMEVVDV 580 (639)
Q Consensus 525 ~~~~~~~~--~~~---------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~------~~~~~d~ 580 (639)
........ ... ...+.++||| +-|..+.+.+. ...|.. ..+.++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~-----------slG~il~el~~~g~~p~~~~~~~~~~~~~~~ 241 (283)
T cd05090 173 EIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIW-----------SFGVVLWEIFSFGLQPYYGFSNQEVIEMVRK 241 (283)
T ss_pred cccCCcceecccCCCccceecChHHhccCCCCchhhhH-----------HHHHHHHHHHcCCCCCCCCCCHHHHHHHHHc
Confidence 65432211 000 0012245555 33333333222 111110 0011111
Q ss_pred cccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 581 NLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
... ...+..+...+.+++.+|++.+|++||++.+|.++|.
T Consensus 242 ~~~------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 281 (283)
T cd05090 242 RQL------LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281 (283)
T ss_pred CCc------CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence 000 0011223446777889999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-18 Score=170.71 Aligned_cols=118 Identities=25% Similarity=0.311 Sum_probs=94.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|+|.+..... .....+..|+.+++ .+|+||+++|+|..+
T Consensus 11 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~ 90 (285)
T cd05631 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFH 90 (285)
T ss_pred CCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHH
Confidence 46889999886 5689999998864432 12234455655533 268899999999887
Q ss_pred ccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.. ....+++.++..++.+++.|++||| +.+|+||||||+||++++++.++++|||+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~ 153 (285)
T cd05631 91 IYNMGNPGFDEQRAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLAVQIP 153 (285)
T ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcC
Confidence 754 2345899999999999999999999 6789999999999999999999999999998654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=165.14 Aligned_cols=117 Identities=26% Similarity=0.378 Sum_probs=90.9
Q ss_pred CCcCcceEEEecC---CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD---GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~---g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++...+ +..+++|.+..... .....+..|...++ .+|+||+++|+|.++
T Consensus 6 G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~ 85 (269)
T cd05087 6 GWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGY 85 (269)
T ss_pred cCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHH
Confidence 4688999997654 35688888765432 22234555555532 378999999999998
Q ss_pred cccC----CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSS----NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~----~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++.. ....++..+.+++.++|+|++||| ..+++||||||+||+++.++.++++|||+++..
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~ 150 (269)
T cd05087 86 LRSCRKAELMTPDPTTLQRMACEIALGLLHLH---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNK 150 (269)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCEeccccCcceEEEcCCCcEEECCccccccc
Confidence 8642 234678888899999999999999 678999999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-18 Score=170.52 Aligned_cols=202 Identities=23% Similarity=0.271 Sum_probs=128.4
Q ss_pred CCcCcceEEEecC--------CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD--------GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~--------g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.... ...+++|.++.........+..+...++ .+|+||+++|+
T Consensus 6 G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 85 (258)
T cd05078 6 GTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGS 85 (258)
T ss_pred ccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCc
Confidence 4688999987532 2347888876554444445555555532 27899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--------eeeccccccccccccC
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--------AHLSDFGMAKLLLKED 530 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--------~~i~dfgla~~~~~~~ 530 (639)
|..+++.....++|..+.+++.+++.|++||| ..+|+||||||+||+++.+.. ++++|||++.......
T Consensus 86 L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~~ 162 (258)
T cd05078 86 LDTYLKKNKNLINISWKLEVAKQLAWALHFLE---DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKE 162 (258)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEecccccccCCCceEEecccccccccCCch
Confidence 99998765556899999999999999999999 678999999999999988765 5899999886544322
Q ss_pred CC-c------cc-----cccccccccccCCCCCCCccCCCccchHHHHHhh-CCCCcceeee-ccccccccccccchHHH
Q 041082 531 QS-F------TQ-----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDL-LPISVMEVVD-VNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 531 ~~-~------~~-----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~-~~~~~~~~~d-~~l~~~~~~~~~~~~~~ 596 (639)
.. . +. ...+.++|+| +-|..+.+++... .+....+... ...... ....+...
T Consensus 163 ~~~~~~~y~aPE~~~~~~~~~~~~Diw-----------slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 228 (258)
T cd05078 163 ILLERIPWVPPECIENPQNLSLAADKW-----------SFGTTLWEIFSGGDKPLSALDSQKKLQFYED---RHQLPAPK 228 (258)
T ss_pred hccccCCccCchhccCCCCCCchhhHH-----------HHHHHHHHHHcCCCCChhhccHHHHHHHHHc---cccCCCCC
Confidence 11 0 00 0012234554 3333333333221 1111000000 000000 00001112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
...+.+++.+|++.+|++||+|.++++.|
T Consensus 229 ~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 229 WTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred cHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 24578899999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=171.32 Aligned_cols=220 Identities=23% Similarity=0.293 Sum_probs=134.4
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||++... ....+|+|.+.... ......+..|+..++ .+++||+++
T Consensus 23 G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 102 (314)
T cd05099 23 GCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAK 102 (314)
T ss_pred CCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCC
Confidence 467889987632 23568888876432 222344555555432 267899999
Q ss_pred CCchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++... ...++|.+..+++.+++.||+||| ..+++||||||+||+++.++.+|++|||
T Consensus 103 g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~Dfg 179 (314)
T cd05099 103 GNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFG 179 (314)
T ss_pred CcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeeccccceeEEEcCCCcEEEcccc
Confidence 9999888541 135899999999999999999999 6789999999999999999999999999
Q ss_pred ccccccccCCCcc--cccc---ccccccc-cCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeecccccccccccc
Q 041082 522 MAKLLLKEDQSFT--QNTN---TCHHRIY-GTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 522 la~~~~~~~~~~~--~~~~---~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~~~ 591 (639)
+++.......... .... .....++ +.......|+|+.|..+.+++. ...|.. ..+.++. +.... ..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~-~~~~~--~~~ 256 (314)
T cd05099 180 LARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKL-LREGH--RMD 256 (314)
T ss_pred ccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCC--CCC
Confidence 9986543211100 0000 0000010 1111122333344444433332 111111 0000000 00000 001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+..+...+.+++.+|++.+|++||++.|+++.|.++....
T Consensus 257 ~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~ 297 (314)
T cd05099 257 KPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAV 297 (314)
T ss_pred CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHh
Confidence 11233446778999999999999999999999999887543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=169.91 Aligned_cols=145 Identities=23% Similarity=0.296 Sum_probs=108.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+..... .....+..|++.++ .+|+||+++|+|.+++.
T Consensus 16 G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 95 (331)
T cd06649 16 GNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 95 (331)
T ss_pred CCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHH
Confidence 457889998865 578899998875432 22345666766643 36899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------cc-
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------FT- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------~~- 534 (639)
.. ..+++.....++.+++.|++|||+ ..+|+||||||+||+++.++.+||+|||+++........ .+
T Consensus 96 ~~-~~~~~~~~~~~~~~i~~~l~~lH~--~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE 172 (331)
T cd06649 96 EA-KRIPEEILGKVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 172 (331)
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHh
Confidence 43 357888899999999999999995 236999999999999999999999999999765432111 00
Q ss_pred ---ccccccccccc--c-------CCCCCCCc
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++|+| | ||+.|...
T Consensus 173 ~~~~~~~~~~~DiwslG~il~el~tg~~p~~~ 204 (331)
T cd06649 173 RLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP 204 (331)
T ss_pred HhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 01123478999 7 89888753
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-18 Score=167.57 Aligned_cols=195 Identities=25% Similarity=0.383 Sum_probs=132.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++....+..+++|.+..... ....|..|++.++ .+++||+++|+|.+++...
T Consensus 15 g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~ 93 (256)
T cd05112 15 GQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQ 93 (256)
T ss_pred cccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhC
Confidence 467899999887778899998764322 2345666766643 2688999999999988764
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------------~ 534 (639)
...++|..+..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++......... +
T Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aP 170 (256)
T cd05112 94 RGKFSQETLLGMCLDVCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSP 170 (256)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCH
Confidence 456889999999999999999999 5679999999999999999999999999987654321100 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | + |+.|.... ...+.+.... .. ....++. .....+
T Consensus 171 e~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~-~~-~~~~~~~-------------~~~~~~ 230 (256)
T cd05112 171 EVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENR-----SNSEVVETIN-AG-FRLYKPR-------------LASQSV 230 (256)
T ss_pred hHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcC-----CHHHHHHHHh-CC-CCCCCCC-------------CCCHHH
Confidence 0 0112245666 4 3 44444321 1111111100 00 0011111 123458
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
.+++.+|++.+|++||+|.||+++|
T Consensus 231 ~~l~~~~l~~~p~~Rp~~~~~l~~l 255 (256)
T cd05112 231 YELMQHCWKERPEDRPSFSLLLHQL 255 (256)
T ss_pred HHHHHHHcccChhhCCCHHHHHHhh
Confidence 8899999999999999999999887
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=168.68 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=132.1
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+++||+++|+
T Consensus 46 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 125 (302)
T cd05055 46 GAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGD 125 (302)
T ss_pred cCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCCCc
Confidence 457889888641 24578999876432 222334555555532 26899999999
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
|.++++.. ...++|.+...++.+++.|++||| ..+++|+||||+||+++.+..++++|||+++.+.......
T Consensus 126 L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~ 202 (302)
T cd05055 126 LLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGN 202 (302)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCC
Confidence 99998753 234899999999999999999999 6789999999999999999999999999998654322100
Q ss_pred ---------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 ---------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 ---------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
+. ...+.++||| | | |+.|....... .....++.... ..
T Consensus 203 ~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~-~~~~~~~~~~~------------~~------ 263 (302)
T cd05055 203 ARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVD-SKFYKLIKEGY------------RM------ 263 (302)
T ss_pred CCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCch-HHHHHHHHcCC------------cC------
Confidence 00 0112256776 5 4 55554321110 01111111000 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
..+......+.+++.+|++.+|++||++.||++.|++.
T Consensus 264 ~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 264 AQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 00011123577899999999999999999999999763
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-18 Score=168.22 Aligned_cols=197 Identities=26% Similarity=0.403 Sum_probs=136.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+++|.+..... ....+..++..++ .+++||+++++|.+++...
T Consensus 17 g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~ 95 (261)
T cd05034 17 GQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSG 95 (261)
T ss_pred CcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhcc
Confidence 457899999988888899998874432 2345666655533 3689999999999998763
Q ss_pred C-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------------c
Q 041082 467 N-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------F 533 (639)
Q Consensus 467 ~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------~ 533 (639)
. ..++|.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++........ .
T Consensus 96 ~~~~~~~~~~~~~~~~i~~al~~lh---~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~ 172 (261)
T cd05034 96 EGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTA 172 (261)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccC
Confidence 2 46899999999999999999999 667999999999999999999999999998866432110 0
Q ss_pred cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.++|+| | | |+.|.... ......+.+..... . ..+......
T Consensus 173 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~-----~-------------~~~~~~~~~ 232 (261)
T cd05034 173 PEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM--TNREVLEQVERGYR-----M-------------PRPPNCPEE 232 (261)
T ss_pred HHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC-----C-------------CCCCCCCHH
Confidence 00 0112356676 5 4 55554321 01111111110000 0 001112345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
+.+++.+|+..+|++||++.++++.|+.
T Consensus 233 ~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 233 LYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 7889999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-19 Score=183.54 Aligned_cols=280 Identities=24% Similarity=0.264 Sum_probs=137.4
Q ss_pred EEeCCCCCc-ccCCcCCCCCCCCCEEeccCCcCCc----cCCccccCCcccceeeccCCcCCC------CCCccccCCCC
Q 041082 57 LNISGLSLT-STIPSELGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTLFG------EIPEELGNLAE 125 (639)
Q Consensus 57 L~L~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~ 125 (639)
|+|..+.++ ...+..+..+++|+.|+++++.++. .++..+...+.|+.|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 555666655 3334445566667777777777643 245555566667777777766642 23445666777
Q ss_pred CcEEecccccCccccCccccCCCC---CCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCC-CCCcEEEcccCC
Q 041082 126 LETLWLQNNFLTGTIHSSIFNLSS---LSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNS 201 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~ 201 (639)
|+.|+|++|.+.+..+..+..+.+ |++|++++|.+++..+ ..+...+..+ ++|+.|++++|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------RLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------HHHHHHHHhCCCCceEEEcCCCc
Confidence 777777777776555544444443 6666666666552100 0111122222 445555555555
Q ss_pred Cccc----CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCC
Q 041082 202 FFDL----IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277 (639)
Q Consensus 202 l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 277 (639)
+++. ++..+..+++|++|++++|.+++.. .. .++..+..+++|+
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~------------------------------~l~~~l~~~~~L~ 196 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAG--IR------------------------------ALAEGLKANCNLE 196 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHH--HH------------------------------HHHHHHHhCCCCC
Confidence 4421 1223444555666666666554310 00 0011112223333
Q ss_pred EEECCCCCCCcc----ccccccCCcCCcEEEccCCcCCCCCchhhc-----CCCCCcEEECCCCcCcc----cCCccccC
Q 041082 278 AIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLEGPIPYEFC-----RLASLYELDLSGNKLSG----SIPTCFGN 344 (639)
Q Consensus 278 ~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~ 344 (639)
.|++++|.+++. ++..+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..
T Consensus 197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276 (319)
T ss_pred EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence 333333333211 112223334444444444444321111111 12456666666666541 12233444
Q ss_pred CCCCCEEeCCCCcCccc----chhhhhcC-CCCcEEEcccCCC
Q 041082 345 QTSLRILSLDSNKLISI----IPSTLWNL-KDILYLNLSSNFF 382 (639)
Q Consensus 345 l~~L~~L~l~~N~l~~~----~p~~~~~l-~~L~~L~ls~N~l 382 (639)
+++|+++++++|.+... ....+... +.|+++++.+|++
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 56777777777777644 33333333 5677777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-17 Score=169.66 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=130.3
Q ss_pred CCcCcceEEEecC-----------------CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------h
Q 041082 407 SGFGSIYKARIQD-----------------GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------K 448 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----------------g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~ 448 (639)
.++|.||++.... +..+++|.+..... .....+..|++.++ .
T Consensus 16 G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~ 95 (296)
T cd05051 16 GQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLC 95 (296)
T ss_pred CCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCcE
Confidence 4577888776542 24588998765432 23455666666543 2
Q ss_pred hhhhcCCCCCchhccccCC----------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeec
Q 041082 449 LVLEYMPHGSLEKCLYSSN----------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLS 518 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~----------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~ 518 (639)
+++||+++++|.+++.... ..+++.....++.+++.||+||| ..+++||||||+||+++.++.++++
T Consensus 96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH---~~~i~H~dlkp~Nili~~~~~~~l~ 172 (296)
T cd05051 96 MIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRNCLVGKNYTIKIA 172 (296)
T ss_pred EEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCccccccchhceeecCCCceEEc
Confidence 5789999999998886522 25899999999999999999999 6679999999999999999999999
Q ss_pred cccccccccccCCCc-------------cc----cccccccccccCCCCCCCccCCCccchHHHHH--hhCCCCc---ce
Q 041082 519 DFGMAKLLLKEDQSF-------------TQ----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN--DLLPISV---ME 576 (639)
Q Consensus 519 dfgla~~~~~~~~~~-------------~~----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~--~~~~~~~---~~ 576 (639)
|||+++......... +. ...+.++||| +.|..+.+++. ...|... .+
T Consensus 173 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~-----------slG~~l~el~~~~~~~p~~~~~~~~ 241 (296)
T cd05051 173 DFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVW-----------AFGVTLWEILTLCREQPYEHLTDQQ 241 (296)
T ss_pred cccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhh-----------hhHHHHHHHHhcCCCCCCCCcChHH
Confidence 999998654322110 00 0112245555 33333333322 0111000 00
Q ss_pred eeeccccc----cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 577 VVDVNLLS----MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 577 ~~d~~l~~----~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+++..... ........+..+...+.+++.+|++.+|++||+|.||++.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 242 VIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred HHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 00000000 000000011123356889999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=163.77 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=86.8
Q ss_pred CCcCcceEEEecCC---ceeeeEEechhh-hhhhhhHHHHHHHH--------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDG---MKVAVKVFDLQY-ERAFKSFDVACDMM--------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g---~~vavK~l~~~~-~~~~~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++...++ ..+++|.+.... ......|..++..+ ..+|+||+++|+|.++
T Consensus 6 G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 85 (268)
T cd05086 6 GWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSY 85 (268)
T ss_pred CcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHH
Confidence 45889999875443 245566654332 12234555554432 2478999999999998
Q ss_pred cccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 463 LYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 463 l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++.. ....++.....++.++|+||+||| ..+++||||||+||+++.++.++++|||+++.
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~ 148 (268)
T cd05086 86 LSQEQWHRRNSQLLLLQRMACEIAAGVTHMH---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPS 148 (268)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHHHHHHH---HCCeeccCCccceEEEcCCccEEecccccccc
Confidence 8752 234566777899999999999999 66799999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-18 Score=177.21 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=91.6
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--ccccccc---ccc
Q 041082 469 ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQNTNTC---HHR 543 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~~~~~~---~~d 543 (639)
.++|.+..+|+.+++.||+||| ..+|+||||||+||+++++..+|++|||+++......... .....+. ...
T Consensus 235 ~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE 311 (401)
T cd05107 235 ALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPE 311 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChH
Confidence 4688889999999999999999 6789999999999999999999999999998653221100 0000000 000
Q ss_pred cc-cCCCCCCCccCCCccchHHHHH-hhCCCCc---ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCH
Q 041082 544 IY-GTRRNPQMNFFSGEMTLKSWVN-DLLPISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 544 vy-Gtg~~p~~~~~~~~~~l~~~~~-~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m 618 (639)
+. +....+..|+|+.|..+.+.+. ...|... .+.....+... .+...+..+...+.+++..|++.+|++||+|
T Consensus 312 ~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~ 389 (401)
T cd05107 312 SIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRG--YRMAKPAHASDEIYEIMQKCWEEKFEIRPDF 389 (401)
T ss_pred HhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHcCCChhHCcCH
Confidence 00 1111122233333433433332 1112110 00000000000 0001111233567888899999999999999
Q ss_pred HHHHHHHHHh
Q 041082 619 KESVTRLLKI 628 (639)
Q Consensus 619 ~~v~~~l~~~ 628 (639)
.||+..|+++
T Consensus 390 ~ell~~L~~~ 399 (401)
T cd05107 390 SQLVHLVGDL 399 (401)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=165.24 Aligned_cols=197 Identities=21% Similarity=0.368 Sum_probs=134.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcccc-C
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYS-S 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~-~ 466 (639)
.++|.||++....+..+++|.+..... ....+..|+..++ .+++||+++|+|.+++.. .
T Consensus 17 g~~~~vy~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~ 95 (260)
T cd05073 17 GQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDE 95 (260)
T ss_pred ccceEEEEEEecCCccEEEEecCCChh-HHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCCCcHHHHHHhCC
Confidence 457899999887778899998754322 2345555655533 368999999999998865 3
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-c----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-Q---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-~---------- 535 (639)
...++|.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++.......... .
T Consensus 96 ~~~~~~~~~~~~~~~l~~aL~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~P 172 (260)
T cd05073 96 GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 172 (260)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH---hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCH
Confidence 345899999999999999999999 56799999999999999999999999999876543221100 0
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++|+| | | |+.|.... ....+..+....... +........+
T Consensus 173 E~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 232 (260)
T cd05073 173 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNPEVIRALERGYRM------------------PRPENCPEEL 232 (260)
T ss_pred hHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHhCCCCC------------------CCcccCCHHH
Confidence 0112245666 4 4 44444321 011111111110000 0011223457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLK 627 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~ 627 (639)
.+++.+|++.+|++||++.++.+.|+.
T Consensus 233 ~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 233 YNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 788899999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=163.75 Aligned_cols=199 Identities=20% Similarity=0.323 Sum_probs=130.5
Q ss_pred CCcCcceEEEecC--CceeeeEEechhhh----------hhhhhHHHHHHHHH---------------------hhhhhc
Q 041082 407 SGFGSIYKARIQD--GMKVAVKVFDLQYE----------RAFKSFDVACDMMK---------------------KLVLEY 453 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g~~vavK~l~~~~~----------~~~~~f~~e~~~~~---------------------~Lv~ey 453 (639)
.++|.+|++.... +..+++|.+..... .....+..++..+. .+++||
T Consensus 11 G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~ 90 (269)
T cd08528 11 GAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDL 90 (269)
T ss_pred CCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEec
Confidence 4578999998765 67899998754321 11233444444322 268999
Q ss_pred CCCCCchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 454 MPHGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 454 ~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+++++|.+++.. ....+++..+.+++.+++.|++|||+ ..+++|||||+.||+++.++.++++|||++.......
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~--~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~ 168 (269)
T cd08528 91 IEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES 168 (269)
T ss_pred CCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--CCceeecCCCHHHEEECCCCcEEEecccceeeccccc
Confidence 999999887743 33468899999999999999999994 2469999999999999999999999999998654432
Q ss_pred CCc----------cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 531 QSF----------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 531 ~~~----------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
... +. ...+.++||| | +|+.|.... .....+..... ......
T Consensus 169 ~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~-----~~~~~~~~~~~--------~~~~~~-- 233 (269)
T cd08528 169 KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST-----NMLSLATKIVE--------AVYEPL-- 233 (269)
T ss_pred ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc-----CHHHHHHHHhh--------ccCCcC--
Confidence 100 00 0112256666 5 566554321 11111111110 000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
........+.+++.+|++.+|++||+|.||.++++
T Consensus 234 ----~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 234 ----PEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred ----CcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 00012235677888999999999999999999885
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=168.37 Aligned_cols=197 Identities=24% Similarity=0.330 Sum_probs=129.7
Q ss_pred CCcCcceEEEecC------CceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.... +..+++|...... ......|..|...++ .+|+||+++|+|
T Consensus 17 g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L 96 (277)
T cd05036 17 GAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDL 96 (277)
T ss_pred CCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCH
Confidence 4578999998753 4678888775332 222334555555432 368999999999
Q ss_pred hhccccCC------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeeccccccccccccC
Q 041082 460 EKCLYSSN------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~~------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~~ 530 (639)
.++++... ..++|.++.+++.+|++|++||| ..+++||||||+||+++.++ .+|++|||+++.+....
T Consensus 97 ~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~ 173 (277)
T cd05036 97 KSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRAS 173 (277)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccchheEEEeccCCCcceEeccCccccccCCcc
Confidence 99886522 25899999999999999999999 66799999999999998654 69999999998663221
Q ss_pred CCc-------------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF-------------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~-------------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... +. ...+.++||| | | |+.|.+.. .-.+.+....... .
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~-----~~~~~~~~~~~~~---------~ 239 (277)
T cd05036 174 YYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR-----TNQEVMEFVTGGG---------R 239 (277)
T ss_pred ceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHHHHcCC---------c
Confidence 110 00 1122256666 4 2 54444311 0111111100000 0
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
. ..+..+...+.+++.+|++.+|++||++.+|++.|+
T Consensus 240 ~------~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 240 L------DPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred C------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 0 011223346788999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=166.52 Aligned_cols=201 Identities=23% Similarity=0.345 Sum_probs=136.5
Q ss_pred CCcCcceEEEecC-C----ceeeeEEechhhh-hhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-G----MKVAVKVFDLQYE-RAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g----~~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++.... | ..+++|....... .....+..|+..++ .+|+||+++|+|.+
T Consensus 18 g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~g~L~~ 97 (279)
T cd05057 18 GAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPLGCLLD 97 (279)
T ss_pred CCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCCCcHHH
Confidence 5688999988643 3 2588887754432 22345555655533 26789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------- 534 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------- 534 (639)
++......+++....+++.++++|++||| ..+++||||||+||+++.++.+|++|||+++.+........
T Consensus 98 ~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~ 174 (279)
T cd05057 98 YVRNHKDNIGSQYLLNWCVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVP 174 (279)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCccc
Confidence 98765556899999999999999999999 67899999999999999999999999999987653221100
Q ss_pred ------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 535 ------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 535 ------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
. ...+.++|+| | | |+.|.... ...++........ . ...+.
T Consensus 175 ~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-----~~~~~~~~~~~~~---~------------~~~~~ 234 (279)
T cd05057 175 IKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI-----PAVEIPDLLEKGE---R------------LPQPP 234 (279)
T ss_pred ccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHhCCC---C------------CCCCC
Confidence 0 0112256666 4 4 55554321 1111111110000 0 00111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+...+.+++.+|+..+|++||++.++++.+.++..
T Consensus 235 ~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~ 270 (279)
T cd05057 235 ICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMAR 270 (279)
T ss_pred CCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 233457788999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=166.34 Aligned_cols=117 Identities=32% Similarity=0.425 Sum_probs=95.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. .++..+++|++..........+..|+..++ .+|+||+++|+|.++++.
T Consensus 20 g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~ 99 (267)
T cd06646 20 GTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHV 99 (267)
T ss_pred CCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHh
Confidence 45789999986 567899999987554333444555555533 268999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
. ..+++.++..++.+++.|+.||| ..+|+|||+||.||+++.++.++++|||+++.+.
T Consensus 100 ~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~ 157 (267)
T cd06646 100 T-GPLSELQIAYVCRETLQGLAYLH---SKGKMHRDIKGANILLTDNGDVKLADFGVAAKIT 157 (267)
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEECcCccceeec
Confidence 3 35789999999999999999999 6789999999999999999999999999988654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=165.54 Aligned_cols=197 Identities=28% Similarity=0.459 Sum_probs=137.8
Q ss_pred CCcCcceEEEecC----CceeeeEEechhhhhh-hhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQYERA-FKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~~~~-~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... +..+++|.+....... ...+..++...+ .+++||+++|+|.+
T Consensus 6 g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (262)
T cd00192 6 GAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLD 85 (262)
T ss_pred CCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHH
Confidence 4578899998754 7889999987654332 345555555532 36899999999999
Q ss_pred ccccC--------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 462 CLYSS--------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 462 ~l~~~--------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
++... ...+++..+.+++.++++|++||| ..+++||||||+||+++.++.++++|||.++........
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~ 162 (262)
T cd00192 86 YLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYR 162 (262)
T ss_pred HHhhccccccccccccCCHHHHHHHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEcccccccccccccccc
Confidence 98764 366899999999999999999999 678999999999999999999999999999876543210
Q ss_pred ------c------cc----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 533 ------F------TQ----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 533 ------~------~~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
. +. ...+.++||| | + |+.|..+. ....+.+.+.. ..
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~---~~------------- 224 (262)
T cd00192 163 KKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL--SNEEVLEYLRK---GY------------- 224 (262)
T ss_pred cccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHc---CC-------------
Confidence 0 00 0122356777 5 4 46665432 11112222111 00
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
....+..+...+.+++.+|+..+|++||++.|++..|+
T Consensus 225 --~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 225 --RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred --CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 00111223456778999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=168.83 Aligned_cols=194 Identities=22% Similarity=0.270 Sum_probs=127.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.- ..|..+|+|.+..... .....+..+...++ .+||||+++|+|..+
T Consensus 6 G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~ 85 (325)
T cd05594 6 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH 85 (325)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence 45889998875 4678999999865432 12233344444422 378999999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----c---
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----T--- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----~--- 534 (639)
+... ..+++.....++.+++.||+|||. ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 86 l~~~-~~l~~~~~~~~~~qi~~aL~~lH~--~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y 162 (325)
T cd05594 86 LSRE-RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEY 162 (325)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCccc
Confidence 7643 358999999999999999999993 2579999999999999999999999999987533211110 0
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ...+......... ..+ +.....
T Consensus 163 ~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~-----~~~~~~~~i~~~~------~~~----------p~~~~~ 221 (325)
T cd05594 163 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEE------IRF----------PRTLSP 221 (325)
T ss_pred CCHHHHccCCCCCccccccccceeeeeccCCCCCCCC-----CHHHHHHHHhcCC------CCC----------CCCCCH
Confidence 01122367777 5 677665421 1111111111110 000 001122
Q ss_pred HHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRI-----NAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP-----~m~~v~~~ 624 (639)
.+.++..+|++.+|++|| ++.++++.
T Consensus 222 ~~~~li~~~L~~dP~~R~~~~~~~~~~il~h 252 (325)
T cd05594 222 EAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH 252 (325)
T ss_pred HHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence 456678899999999996 88888753
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=169.50 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=128.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..++..++ .+|+||+++|+|
T Consensus 17 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L 96 (288)
T cd05061 17 GSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDL 96 (288)
T ss_pred CCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCH
Confidence 467899988653 245789998754321 12223444544432 378999999999
Q ss_pred hhccccC---------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYSS---------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~---------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.+++... ....++....+++.+++.|++||| ..+|+||||||+||++++++.++++|||+++......
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~ 173 (288)
T cd05061 97 KSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 173 (288)
T ss_pred HHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCCChheEEEcCCCcEEECcCCccccccccc
Confidence 9988641 123567778899999999999999 7789999999999999999999999999998654322
Q ss_pred CCcc--c---------------cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCC---cceeeecccccccccc
Q 041082 531 QSFT--Q---------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPIS---VMEVVDVNLLSMEDKY 589 (639)
Q Consensus 531 ~~~~--~---------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~---~~~~~d~~l~~~~~~~ 589 (639)
.... . ...+.++||| +.|..+.+.+. ...|.. ..++.+....+. .
T Consensus 174 ~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dvw-----------slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~---~ 239 (288)
T cd05061 174 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMW-----------SFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGG---Y 239 (288)
T ss_pred cccccCCCcccccccCHHHhccCCCChHhHHH-----------HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC---C
Confidence 1100 0 0011244555 22322222221 011110 001100000000 0
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+..+...+.+++.+|++.+|++||+|.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~ 278 (288)
T cd05061 240 LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD 278 (288)
T ss_pred CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence 011122345788899999999999999999999988764
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=172.79 Aligned_cols=210 Identities=21% Similarity=0.334 Sum_probs=150.2
Q ss_pred CCcCcceEEEec--CC--ceeeeEEechhhhh-hhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ--DG--MKVAVKVFDLQYER-AFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g--~~vavK~l~~~~~~-~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
..||.|++|.|. +| ..||||.+...... ...+|..|+..|. ++|+|..+.|||.+.
T Consensus 121 GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELaplGSLldr 200 (1039)
T KOG0199|consen 121 GSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPLGSLLDR 200 (1039)
T ss_pred cceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhcccchHHHH
Confidence 358999999884 34 57899998765543 5678888887743 379999999999999
Q ss_pred ccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccccccc
Q 041082 463 LYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH 541 (639)
Q Consensus 463 l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~ 541 (639)
|+. ....|-......+|.+||.||.||. ....||||+-++|+||-....+||+||||.|-+..++..... ..-.|
T Consensus 201 Lrka~~~~llv~~Lcdya~QiA~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm-~p~rk 276 (1039)
T KOG0199|consen 201 LRKAKKAILLVSRLCDYAMQIAKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVM-APQRK 276 (1039)
T ss_pred HhhccccceeHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEe-cCCCc
Confidence 987 4456778888999999999999999 778999999999999999999999999999988765422100 00000
Q ss_pred cc-cc-c-----CCC-CCCCccCCCccchHHHHHhhC-CC------CcceeeeccccccccccccchHHHHHHHHHHHhh
Q 041082 542 HR-IY-G-----TRR-NPQMNFFSGEMTLKSWVNDLL-PI------SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAME 606 (639)
Q Consensus 542 ~d-vy-G-----tg~-~p~~~~~~~~~~l~~~~~~~~-~~------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~ 606 (639)
.- .| . +++ +-.+|+|..|+.||+.....- |. .+.+.+|. +++.+.++.|...+++++..
T Consensus 277 vPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~------~erLpRPk~csedIY~imk~ 350 (1039)
T KOG0199|consen 277 VPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDA------GERLPRPKYCSEDIYQIMKN 350 (1039)
T ss_pred CcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccc------cccCCCCCCChHHHHHHHHH
Confidence 00 00 0 111 122344566777776543211 11 13344442 22345678899999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHH
Q 041082 607 CTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 607 C~~~~p~~RP~m~~v~~~l~ 626 (639)
||...|++|||+..+.+.+.
T Consensus 351 cWah~paDRptFsair~~~~ 370 (1039)
T KOG0199|consen 351 CWAHNPADRPTFSAIREDLV 370 (1039)
T ss_pred hccCCccccccHHHHHHhHH
Confidence 99999999999999986543
|
|
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=164.71 Aligned_cols=199 Identities=25% Similarity=0.309 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... .+..+++|.+.... ......+..++...+ .+|+||+++|+|.+++.
T Consensus 15 g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~ 94 (277)
T cd06640 15 GSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLR 94 (277)
T ss_pred CCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHh
Confidence 457889999864 57899999886543 223345556655532 37899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc---------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ--------- 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~--------- 535 (639)
. ..+++.+...++.+++.|++|+| ..+++|+||+|+||+++.++.++++|||+++...........
T Consensus 95 ~--~~l~~~~~~~~~~~l~~~l~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a 169 (277)
T cd06640 95 A--GPFDEFQIATMLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 169 (277)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccC
Confidence 4 35788889999999999999999 678999999999999999999999999999766432211000
Q ss_pred ------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCCcc---eeeeccccccccccccchHHHHHHHHHHHhh
Q 041082 536 ------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVM---EVVDVNLLSMEDKYFTTKKQCLSFVFNLAME 606 (639)
Q Consensus 536 ------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~ 606 (639)
...+.++|+| +.|..+.+++....|.... +.+...... ........+...+.+++.+
T Consensus 170 pE~~~~~~~~~~~Dv~-----------slG~il~el~tg~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~ 235 (277)
T cd06640 170 PEVIQQSAYDSKADIW-----------SLGITAIELAKGEPPNSDMHPMRVLFLIPKN---NPPTLTGEFSKPFKEFIDA 235 (277)
T ss_pred HhHhccCCCccHHHHH-----------HHHHHHHHHHHCCCCCCCcChHhHhhhhhcC---CCCCCchhhhHHHHHHHHH
Confidence 0112245555 3333333333322221100 000000000 0011123456678899999
Q ss_pred ccCCCCCCCCCHHHHHHH
Q 041082 607 CTAESPKQRINAKESVTR 624 (639)
Q Consensus 607 C~~~~p~~RP~m~~v~~~ 624 (639)
|++.+|++||+|.+|++.
T Consensus 236 ~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 236 CLNKDPSFRPTAKELLKH 253 (277)
T ss_pred HcccCcccCcCHHHHHhC
Confidence 999999999999999865
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=167.83 Aligned_cols=189 Identities=24% Similarity=0.335 Sum_probs=121.5
Q ss_pred ceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccCC----------cc
Q 041082 421 MKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSSN----------YI 469 (639)
Q Consensus 421 ~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~~----------~~ 469 (639)
..+|+|.+.... ......+..|+..++ .+++||+++|+|.+++.... ..
T Consensus 47 ~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ 126 (296)
T cd05095 47 VLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVT 126 (296)
T ss_pred eEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccc
Confidence 468888876432 223345666666533 26899999999998876421 24
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-----------
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ----------- 535 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~----------- 535 (639)
++|.+..+++.+++.|++||| ..+++||||||+||+++.++.++++|||+++.+...... ...
T Consensus 127 ~~~~~~~~~~~~i~~al~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 203 (296)
T cd05095 127 ISYSTLIFMATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWES 203 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHH---HCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHH
Confidence 788899999999999999999 667999999999999999999999999999865332210 000
Q ss_pred ---cccccccccccCCCCCCCccCCCccchHHHHH--hhCCCC---ccee-------eeccccccccccccchHHHHHHH
Q 041082 536 ---NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN--DLLPIS---VMEV-------VDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ---~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~--~~~~~~---~~~~-------~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++|+| +-|..+.+.+. ...|.. ..+. +....... ....+..+...+
T Consensus 204 ~~~~~~~~~~Diw-----------SlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 269 (296)
T cd05095 204 ILLGKFTTASDVW-----------AFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQV---YLPKPALCPDSL 269 (296)
T ss_pred HhcCCccchhhhh-----------HHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccc---cCCCCCCCCHHH
Confidence 0011245555 33333333322 111110 0000 00000000 001112344678
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.+++.+|++.+|++||+|.||++.|+
T Consensus 270 ~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 270 YKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 89999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=171.11 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=149.9
Q ss_pred cCcceEEEecC---C--ceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 409 FGSIYKARIQD---G--MKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 409 ~g~vy~~~l~~---g--~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
||.||+|.+.+ | ..||||.-..... .....|..|.-+|+. +|||..+-|.|..+|
T Consensus 402 FGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~~GELr~yL 481 (974)
T KOG4257|consen 402 FGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAPLGELREYL 481 (974)
T ss_pred ccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecccchhHHHHH
Confidence 89999999753 2 4678887654322 234566666666553 689999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc-------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ------- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~------- 535 (639)
......|+......++.++..||+||| +.+.|||||-.+|||+.....+|++|||++|-+.++.+.. +.
T Consensus 482 q~nk~sL~l~tL~ly~~Qi~talaYLe---SkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKW 558 (974)
T KOG4257|consen 482 QQNKDSLPLRTLTLYCYQICTALAYLE---SKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKW 558 (974)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHH---hhchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceee
Confidence 877778899999999999999999999 7889999999999999999999999999999887655321 00
Q ss_pred ----c----ccccccccccCCCCCCCccCCCccchHHHHHhhC-CCCcceeeeccccccccccccchHHHHHHHHHHHhh
Q 041082 536 ----N----TNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLL-PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAME 606 (639)
Q Consensus 536 ----~----~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~ 606 (639)
+ .-+.++||| ..|+.+|+...-.+ |....+--|.-..-+-+++...++.|...++-|+.+
T Consensus 559 maPESINfRrFTtASDVW-----------MFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmsk 627 (974)
T KOG4257|consen 559 MAPESINFRRFTTASDVW-----------MFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSK 627 (974)
T ss_pred cCccccchhcccchhhHH-----------HHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHH
Confidence 0 011145554 33444444332211 111111111111112233556678999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 607 CTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 607 C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
||+.+|.+||.+.|+++.|..+.++
T Consensus 628 cWayeP~kRPrftei~~~lsdv~qe 652 (974)
T KOG4257|consen 628 CWAYEPSKRPRFTEIKAILSDVLQE 652 (974)
T ss_pred HhccCcccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=172.93 Aligned_cols=193 Identities=21% Similarity=0.304 Sum_probs=125.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+|+|.+..... .....+..|++.++ .+|+||+++|+|....
T Consensus 85 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~- 163 (353)
T PLN00034 85 GAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTH- 163 (353)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccccc-
Confidence 468899999864 678999999854322 22345566666543 2688999999886532
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------F 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~ 533 (639)
..++.....++.++++||+||| ..+|+|||||++||++++++.+||+|||+++.+...... .
T Consensus 164 ----~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a 236 (353)
T PLN00034 164 ----IADEQFLADVARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMS 236 (353)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccC
Confidence 2456677889999999999999 668999999999999999999999999999865432110 0
Q ss_pred ccc---------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 TQN---------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 ~~~---------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
.+. ....++||| | +|+.|.... .. .+|........... .......
T Consensus 237 PE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~--~~---~~~~~~~~~~~~~~------------~~~~~~~ 299 (353)
T PLN00034 237 PERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVG--RQ---GDWASLMCAICMSQ------------PPEAPAT 299 (353)
T ss_pred ccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCC--CC---ccHHHHHHHHhccC------------CCCCCCc
Confidence 000 011256666 5 566554311 00 01111000000000 0001112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+...+.+++..|++.+|++||++.||++.
T Consensus 300 ~~~~l~~li~~~l~~~P~~Rpt~~ell~h 328 (353)
T PLN00034 300 ASREFRHFISCCLQREPAKRWSAMQLLQH 328 (353)
T ss_pred cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 23457788889999999999999999864
|
|
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=170.73 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=92.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|+|++..... .....+..|+..++ .+|+||+++|+|..+
T Consensus 6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 85 (323)
T cd05571 6 GTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH 85 (323)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence 46889999875 4678999999875432 12233444555432 268999999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.+...++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 l~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~ 145 (323)
T cd05571 86 LSRE-RVFSEDRARFYGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCKEG 145 (323)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEeeCCCCccc
Confidence 8643 45889999999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=168.76 Aligned_cols=191 Identities=23% Similarity=0.261 Sum_probs=132.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh----h-hhhhhHHHHHHHHH---------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY----E-RAFKSFDVACDMMK---------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~----~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL 459 (639)
..||.|+.+.. ..+..+|+|.++... . ...+...+|+.+++ .+|+||+.+|+|
T Consensus 28 GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL 107 (370)
T KOG0583|consen 28 GSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDL 107 (370)
T ss_pred CCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEecCCccH
Confidence 34788998864 467999999776541 1 12334445655533 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeecccccccccc-ccCCCccc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLL-KEDQSFTQ-- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~-~~~~~~~~-- 535 (639)
.+++.. ...+......+++.|++.|++|+| +.+|+|||||++|||+|++ +++||+|||++.... .+....+.
T Consensus 108 ~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H---~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cG 183 (370)
T KOG0583|consen 108 FDYIVN-KGRLKEDEARKYFRQLISAVAYCH---SRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCG 183 (370)
T ss_pred HHHHHH-cCCCChHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCC
Confidence 999987 456777888899999999999999 7899999999999999999 999999999999873 32221110
Q ss_pred -------------c-ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 -------------N-TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 -------------~-~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
. ....++||| | +|+.|.++ .. .....+...... .- .
T Consensus 184 sp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d--~~---~~~l~~ki~~~~---~~-------------~ 242 (370)
T KOG0583|consen 184 SPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD--SN---VPNLYRKIRKGE---FK-------------I 242 (370)
T ss_pred CcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC--cc---HHHHHHHHhcCC---cc-------------C
Confidence 0 112367777 6 77777765 11 111111111110 00 0
Q ss_pred hHHH-HHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 593 KKQC-LSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 593 ~~~~-~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
+.-. -..+..++.+|+..+|.+|+++.+|.
T Consensus 243 p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 243 PSYLLSPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred CCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 0011 23466788899999999999999998
|
|
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=163.39 Aligned_cols=117 Identities=26% Similarity=0.362 Sum_probs=89.6
Q ss_pred CCcCcceEEEecCC---ceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDG---MKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g---~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.+||.||++....+ ..+++|.+..... .....|..++..++ .+|+||+++|+|.++
T Consensus 6 G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~ 85 (269)
T cd05042 6 GWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNY 85 (269)
T ss_pred cCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHH
Confidence 46889999876443 4677887654322 22334555555432 368999999999998
Q ss_pred cccCC----ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSN----YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~----~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+.... ...++.....++.+++.|++||| ..+|+||||||.||++++++.+|++|||+++..
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~ 150 (269)
T cd05042 86 LRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQ 150 (269)
T ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHH---hcCEecccccHhheEecCCCcEEEecccccccc
Confidence 86522 23567788899999999999999 678999999999999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=162.90 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+++|.+..........+..++..++ .+|+||++++++...+..
T Consensus 23 g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~ 102 (292)
T cd06644 23 GAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLE 102 (292)
T ss_pred CCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHh
Confidence 567899999875 47899999987655444556666665533 368999999999887765
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------cc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------FT 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~~ 534 (639)
....+++..+..++.++++|++||| ..+++||||||+||+++.++.++|+|||++......... .+
T Consensus 103 ~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP 179 (292)
T cd06644 103 LDRGLTEPQIQVICRQMLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAP 179 (292)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHh---cCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCc
Confidence 4456899999999999999999999 678999999999999999999999999998754321110 00
Q ss_pred c---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++|+| | ||+.|.... +-.+.+....... .+.. ..+...
T Consensus 180 E~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~-----~~~~--------~~~~~~ 241 (292)
T cd06644 180 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSE-----PPTL--------SQPSKW 241 (292)
T ss_pred eeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccc-----cHHHHHHHHhcCC-----CccC--------CCCccc
Confidence 0 0012246666 5 565554321 0011111111000 0000 001122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++||++.||++
T Consensus 242 ~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 242 SMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred CHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 345778899999999999999999975
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=165.24 Aligned_cols=199 Identities=29% Similarity=0.448 Sum_probs=131.6
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcC
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~ 454 (639)
.++|.||++... .+..+|+|.+.... ......+..|++.++ .++++|+
T Consensus 10 g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
T cd05074 10 GEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFM 89 (273)
T ss_pred CCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecC
Confidence 467899999764 35789999886432 222334555555422 2456788
Q ss_pred CCCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 455 PHGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 455 ~~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
++|+|..++.. ....+++....+++.+++.|++||| ..+|+||||||+||+++.++.+|++|||+++.....
T Consensus 90 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~ 166 (273)
T cd05074 90 KHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSG 166 (273)
T ss_pred CCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcccccccccCC
Confidence 89999877642 1235788899999999999999999 567999999999999999999999999999866432
Q ss_pred CCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 530 DQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 530 ~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
.... .. ...+.++||| | + |+.|.... +...+..+.... .. .
T Consensus 167 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~--~~--------~ 234 (273)
T cd05074 167 DYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV--ENSEIYNYLIKG--NR--------L 234 (273)
T ss_pred cceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC--CHHHHHHHHHcC--Cc--------C
Confidence 2100 00 0112256776 5 3 44444311 111111111100 00 0
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
..+..+...+.+++.+|++.+|++||++.++.+.|+.+
T Consensus 235 --------~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 235 --------KQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred --------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 00112334688899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=180.91 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=131.0
Q ss_pred CCcCcceEEEec-C-CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-D-GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~-g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.-. + +..+++|............+..|+..++ .+||||+++|+|.++++
T Consensus 78 G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~ 157 (478)
T PTZ00267 78 NPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIK 157 (478)
T ss_pred CCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHH
Confidence 467889988754 3 5678888765544444445556666543 37899999999998875
Q ss_pred c---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc
Q 041082 465 S---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT 534 (639)
Q Consensus 465 ~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~ 534 (639)
. ....+++.....++.+++.||+|+| ..+|+||||||+||+++.++.+|++|||+++.+...... .+
T Consensus 158 ~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt 234 (478)
T PTZ00267 158 QRLKEHLPFQEYEVGLLFYQIVLALDEVH---SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGT 234 (478)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCC
Confidence 4 2345788889999999999999999 678999999999999999999999999999876432110 00
Q ss_pred ----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.++||| | ||+.|... ....+.+....... .++ .+..
T Consensus 235 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~-----~~~~~~~~~~~~~~----~~~-----------~~~~ 294 (478)
T PTZ00267 235 PYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG-----PSQREIMQQVLYGK----YDP-----------FPCP 294 (478)
T ss_pred ccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCC----CCC-----------CCcc
Confidence 00112256777 5 67666542 11111111111100 000 0011
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++..|++.+|++||++.+++.
T Consensus 295 ~s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 295 VSSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred CCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 2235677888999999999999999975
|
|
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=166.26 Aligned_cols=197 Identities=22% Similarity=0.348 Sum_probs=130.8
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.... +..+++|.+..... .....+..++..++ .+|+||+++|+|
T Consensus 17 g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L 96 (277)
T cd05032 17 GSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDL 96 (277)
T ss_pred CCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCH
Confidence 5678899887643 36799998754321 22334555555532 368899999999
Q ss_pred hhccccC---------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYSS---------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~---------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...++|.....++.+++.|+.||| ..+++||||||+||+++.++.+|++|||+++.+....
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~ 173 (277)
T cd05032 97 KSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETD 173 (277)
T ss_pred HHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccChheEEEcCCCCEEECCcccchhhccCc
Confidence 9988641 124789999999999999999999 7789999999999999999999999999987654322
Q ss_pred CC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.. ... ...+.++||| | | |+.|..+. ....+..++. +...
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~--~~~~~~~~~~-----------~~~~- 239 (277)
T cd05032 174 YYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGL--SNEEVLKFVI-----------DGGH- 239 (277)
T ss_pred ccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccC--CHHHHHHHHh-----------cCCC-
Confidence 10 000 1112245665 4 3 44443210 1111111111 0000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
...+..+...+.+++.+|++.+|++|||+.++++.|+
T Consensus 240 ------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 240 ------LDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred ------CCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 0111223456888999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-18 Score=177.34 Aligned_cols=277 Identities=22% Similarity=0.240 Sum_probs=184.6
Q ss_pred EEeccCCcCC-ccCCccccCCcccceeeccCCcCCCC----CCccccCCCCCcEEecccccCcc------ccCccccCCC
Q 041082 80 TLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGE----IPEELGNLAELETLWLQNNFLTG------TIHSSIFNLS 148 (639)
Q Consensus 80 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~ 148 (639)
.|+|.++.++ ...+..+..+.+|+.|+++++.++.. ++..+...++|+.|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34455556666777777777776432 44455566677777777776652 1223344455
Q ss_pred CCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCC---CCcEEEcccCCCcc----cCccccCCC-CCCCEEE
Q 041082 149 SLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNAS---KLSILELQKNSFFD----LIPNTFGNL-INLKRLN 220 (639)
Q Consensus 149 ~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~ 220 (639)
+|+.|++++| .+.+..+..+..+. +|+.|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 82 ~L~~L~l~~~------------------~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 82 GLQELDLSDN------------------ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ceeEEEccCC------------------CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 5555555554 44433344443333 48889998888863 233345566 8999999
Q ss_pred ccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcc----ccccccC
Q 041082 221 LYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS----IPITLCK 296 (639)
Q Consensus 221 Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~ 296 (639)
+++|.+++... ..++..+..+++|+.|++++|.+++. ++..+..
T Consensus 144 L~~n~l~~~~~--------------------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~ 191 (319)
T cd00116 144 LGRNRLEGASC--------------------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA 191 (319)
T ss_pred cCCCcCCchHH--------------------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh
Confidence 99999875210 01233455667889999999988742 3334556
Q ss_pred CcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCcccCCcccc-----CCCCCCEEeCCCCcCcc----cch
Q 041082 297 LQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGSIPTCFG-----NQTSLRILSLDSNKLIS----IIP 363 (639)
Q Consensus 297 l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~----~~p 363 (639)
.++|+.|++++|.+.+. ++..+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++. .+.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 67999999999998744 334566788999999999998853222221 24799999999999873 234
Q ss_pred hhhhcCCCCcEEEcccCCCCCC----Cccccccc-cccccccccCCCC
Q 041082 364 STLWNLKDILYLNLSSNFFISP----LPLEIGNL-KVLVGIDLSMNNF 406 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l-~~L~~l~ls~N~l 406 (639)
..+..++.|+++++++|.+... +...+... ..++.+|+.+|+|
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 4556678999999999999754 33344444 6788999988875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=171.92 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=89.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||++ ++
T Consensus 11 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~ 89 (338)
T cd07859 11 GSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SD 89 (338)
T ss_pred cCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CC
Confidence 46788999985 4678999998864321 12233444554421 36789995 58
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
|.+++... ..+++..+..++.++++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 90 L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~ 153 (338)
T cd07859 90 LHQVIKAN-DDLTPEHHQFFLYQLLRALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVA 153 (338)
T ss_pred HHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence 88877543 35899999999999999999999 668999999999999999999999999999854
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=164.80 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=127.9
Q ss_pred CCcCcceEEEec--CCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcC
Q 041082 407 SGFGSIYKARIQ--DGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~ 454 (639)
.++|.||++... ++..+|+|.+...... ....+..+...++ .+|+||+
T Consensus 12 G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~ 91 (290)
T cd07862 12 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 91 (290)
T ss_pred CCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccC
Confidence 468899999752 4678999988643321 1122223332211 2677888
Q ss_pred CCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 455 PHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 455 ~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
+ ++|.+++.. ....+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 92 ~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 167 (290)
T cd07862 92 D-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALT 167 (290)
T ss_pred C-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccc
Confidence 6 578777754 2345899999999999999999999 678999999999999999999999999999865432111
Q ss_pred ---------cc----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--C--CCcc-------eeee
Q 041082 533 ---------FT----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--P--ISVM-------EVVD 579 (639)
Q Consensus 533 ---------~~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~--~~~~-------~~~d 579 (639)
.+ ....+.++||| | ||+.|....- .......+.... + .... +.+.
T Consensus 168 ~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 245 (290)
T cd07862 168 SVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIGLPGEEDWPRDVALPRQAFH 245 (290)
T ss_pred cccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHHhCCCChhhchhhhcccchhcc
Confidence 00 01123378999 7 7877765321 111111111110 1 0000 0111
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.-.... .......-..+.++..+|++.+|++|||+.|+++
T Consensus 246 ~~~~~~~---~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~ 286 (290)
T cd07862 246 SKSAQPI---EKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 286 (290)
T ss_pred CCCCCCH---HHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence 0000000 0000111234568999999999999999999975
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=166.63 Aligned_cols=119 Identities=28% Similarity=0.356 Sum_probs=96.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..+..+++ .+||||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 91 (330)
T cd05601 12 GHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSL 91 (330)
T ss_pred ccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHH
Confidence 457899998754 678999999875432 12334555554432 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||.||| ..+|+||||||+||+++.++.+||+|||+++.+..
T Consensus 92 l~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~ 154 (330)
T cd05601 92 LNRYEDQFDEDMAQFYLAELVLAIHSVH---QMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTA 154 (330)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence 8765456899999999999999999999 67899999999999999999999999999986643
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=162.86 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=134.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
+++|.||++... ++..+++|............|..|++.++ .+|+||+++|+|.+++..
T Consensus 16 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 95 (280)
T cd06611 16 GAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLE 95 (280)
T ss_pred CCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHH
Confidence 457889999874 57899999987655544556666666533 368999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------cc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------FT 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~~ 534 (639)
....+++.....++.++|.|+.||| ..+|+||||||+||+++.++.++++|||++......... .+
T Consensus 96 ~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~P 172 (280)
T cd06611 96 LERGLTEPQIRYVCRQMLEALNFLH---SHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAP 172 (280)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCH
Confidence 5556899999999999999999999 667999999999999999999999999998755322110 00
Q ss_pred c---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++|+| | +|+.|..+.- ....+..+. .... +.+ ..+...
T Consensus 173 E~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~-~~~~~~~~~----~~~~-----~~~--------~~~~~~ 234 (280)
T cd06611 173 EVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN-PMRVLLKIL----KSEP-----PTL--------DQPSKW 234 (280)
T ss_pred HHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC-HHHHHHHHh----cCCC-----CCc--------CCcccC
Confidence 0 0012256777 5 6666654210 000011110 0000 000 001122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
...+.+++..|++.+|++||++.+|++.
T Consensus 235 ~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (280)
T cd06611 235 SSSFNDFLKSCLVKDPDDRPTAAELLKH 262 (280)
T ss_pred CHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence 3356778889999999999999999864
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-17 Score=169.62 Aligned_cols=116 Identities=26% Similarity=0.336 Sum_probs=92.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.- ..+..+|+|.+..... .....+..|+..++ .+|+||+++|+|..+
T Consensus 6 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~ 85 (328)
T cd05593 6 GTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFH 85 (328)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHH
Confidence 46789999875 4678999999864321 22234445555432 278999999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.+...++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 86 l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~ 145 (328)
T cd05593 86 LSRE-RVFSEDRTRFYGAEIVSALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEG 145 (328)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeEECCCCcEEEecCcCCccC
Confidence 7643 45889999999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=167.73 Aligned_cols=189 Identities=23% Similarity=0.276 Sum_probs=126.5
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..|..+|+|++...... ....+..|++.++ .+|+||+++|+|.
T Consensus 7 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~ 86 (318)
T cd05582 7 GSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLF 86 (318)
T ss_pred CCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHH
Confidence 45788997764 35789999998754322 1223344554432 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
+++... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++.........
T Consensus 87 ~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~ 162 (318)
T cd05582 87 TRLSKE-VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTV 162 (318)
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCCh
Confidence 988643 35899999999999999999999 6789999999999999999999999999997654331100
Q ss_pred ----c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 ----T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 ----~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+ ....+.++||| | ||+.|.... .-.+.......... . + +...
T Consensus 163 ~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~-----~~~~~~~~i~~~~~-~-~--------------p~~~ 221 (318)
T cd05582 163 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK-----DRKETMTMILKAKL-G-M--------------PQFL 221 (318)
T ss_pred hhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC-----CHHHHHHHHHcCCC-C-C--------------CCCC
Confidence 0 01123378888 6 777776431 11111111111100 0 0 0111
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKE 620 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~ 620 (639)
...+.++..+|++.+|++||++.+
T Consensus 222 ~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 222 SPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CHHHHHHHHHHhhcCHhHcCCCCC
Confidence 224567888999999999999655
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=167.08 Aligned_cols=116 Identities=28% Similarity=0.343 Sum_probs=91.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..++. .+||||+++|+|..
T Consensus 6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~ 85 (321)
T cd05591 6 GSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMF 85 (321)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHH
Confidence 468899999865 468999999865422 11223333433321 37899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 86 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~ 146 (321)
T cd05591 86 QIQRS-RKFDEPRSRFYAAEVTLALMFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEG 146 (321)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEeecccceec
Confidence 87643 35889999999999999999999 668999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-17 Score=165.59 Aligned_cols=117 Identities=26% Similarity=0.408 Sum_probs=92.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|+.+++ .+|+||+++ +|.+++.
T Consensus 16 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~ 94 (288)
T cd07871 16 GTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDS-DLKQYLD 94 (288)
T ss_pred CCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCCc-CHHHHHH
Confidence 468899999764 5789999998754322 2234445555533 268899974 8888776
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.....+++.....++.+++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 95 ~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~ 154 (288)
T cd07871 95 NCGNLMSMHNVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKS 154 (288)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeecc
Confidence 54455788899999999999999999 6789999999999999999999999999997643
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-17 Score=167.39 Aligned_cols=116 Identities=30% Similarity=0.370 Sum_probs=91.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+|+|.+..... .....+..+...+. .+||||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~ 85 (320)
T cd05590 6 GSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMF 85 (320)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHH
Confidence 457899999864 578999999864321 12223333333321 27899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 ~i~~~-~~l~~~~~~~~~~ql~~~L~~lH---~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~ 146 (320)
T cd05590 86 HIQKS-RRFDEARARFYAAEITSALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 146 (320)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeec
Confidence 87643 35889999999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-17 Score=169.65 Aligned_cols=116 Identities=24% Similarity=0.321 Sum_probs=92.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|+|.+..... .....+..|+..++ .+|+||+++|+|..+
T Consensus 6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~ 85 (323)
T cd05595 6 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFH 85 (323)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHH
Confidence 46889999875 4688999999875432 12233444554432 278999999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~ 145 (323)
T cd05595 86 LSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG 145 (323)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEEcCCCCEEecccHHhccc
Confidence 7643 35889999999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-17 Score=163.96 Aligned_cols=193 Identities=24% Similarity=0.340 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. .++..+|+|..+.... .....+..+...++ .+|+||+++|+|.+++.
T Consensus 15 G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~ 94 (277)
T cd06641 15 GSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE 94 (277)
T ss_pred cCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHh
Confidence 46789999875 4678999998764432 22344555554432 37899999999998886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------F 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~ 533 (639)
. ..+++.....++.+++.|++||| ..+++|+||||+||+++.++.++++|||+++.+...... .
T Consensus 95 ~--~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~ 169 (277)
T cd06641 95 P--GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 169 (277)
T ss_pred c--CCCCHHHHHHHHHHHHHHHHHHc---cCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccC
Confidence 4 35889999999999999999999 678999999999999999999999999998765432110 0
Q ss_pred cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
+. ...+.++|+| | ||+.|..... -..+.... +......+ .......+
T Consensus 170 PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~-~~~~~~~~--------------~~~~~~~~ 229 (277)
T cd06641 170 PEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH-----PMKVLFLI-PKNNPPTL--------------EGNYSKPL 229 (277)
T ss_pred hhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc-----hHHHHHHH-hcCCCCCC--------------CcccCHHH
Confidence 00 0112256666 5 5665543210 01111110 00000000 11223456
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++.+|++.+|++||+|.++++.
T Consensus 230 ~~~i~~~l~~~p~~Rp~~~~~l~~ 253 (277)
T cd06641 230 KEFVEACLNKEPSFRPTAKELLKH 253 (277)
T ss_pred HHHHHHHccCChhhCcCHHHHHhC
Confidence 778899999999999999999984
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=164.89 Aligned_cols=203 Identities=24% Similarity=0.371 Sum_probs=128.6
Q ss_pred CCcCcceEEEecC-------CceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD-------GMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~-------g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++...+ +..+++|.+.... ......+..++..++ .+|+||+++|+
T Consensus 6 g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~ 85 (269)
T cd05044 6 GAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGD 85 (269)
T ss_pred ccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCc
Confidence 3578899887642 2568888764332 122345555655533 26889999999
Q ss_pred chhcccc------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-----ceeecccccccccc
Q 041082 459 LEKCLYS------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-----VAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-----~~~i~dfgla~~~~ 527 (639)
|.+++.. ....++|.++..++.+++.|++||| ..+++|+||||+||+++.+. .++++|||+++...
T Consensus 86 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~ 162 (269)
T cd05044 86 LLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIY 162 (269)
T ss_pred HHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHH---hCCcccCCCChheEEEecCCCCCCcceEECCcccccccc
Confidence 9998864 1234789999999999999999999 66799999999999999877 89999999987653
Q ss_pred ccCCCccc-----------------cccccccccccCCCCCCCccCCCccchHHHHH-hhCCCCc---ceeeeccccccc
Q 041082 528 KEDQSFTQ-----------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVN-DLLPISV---MEVVDVNLLSME 586 (639)
Q Consensus 528 ~~~~~~~~-----------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~-~~~~~~~---~~~~d~~l~~~~ 586 (639)
........ ...+.++||| +.|..+.+++. ...|... .+... .+...
T Consensus 163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~-----------slG~il~ellt~g~~p~~~~~~~~~~~-~~~~~- 229 (269)
T cd05044 163 KSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVW-----------SFGVLMWEILTLGQQPYPALNNQEVLQ-HVTAG- 229 (269)
T ss_pred cccccccCcccCCCccccCHHHHccCCcccchhHH-----------HHHHHHHHHHHcCCCCCcccCHHHHHH-HHhcC-
Confidence 32211000 0111244555 33433433332 1111110 00000 00000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.....+......+.+++.+|++.+|++||+|.+|.+.|+
T Consensus 230 -~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 230 -GRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred -CccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 000111223456778999999999999999999999886
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=161.00 Aligned_cols=194 Identities=24% Similarity=0.346 Sum_probs=134.0
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.... +..+++|.+..... ...+..|++..+ .+++||+++++|.+++..
T Consensus 14 g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~ 91 (256)
T cd06612 14 GSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKI 91 (256)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHh
Confidence 4578899998765 78899998865433 456666666533 268999999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
....++|.....++.+++.|++||| ..+++||||+|.||+++.++.++++|||++.......... +
T Consensus 92 ~~~~l~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~P 168 (256)
T cd06612 92 TNKTLTEEEIAAILYQTLKGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAP 168 (256)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCH
Confidence 5567899999999999999999999 5679999999999999999999999999988765332110 0
Q ss_pred c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
. ...+.++||| | ||+.|....... .....+ ..... +. ...+......+.
T Consensus 169 E~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~--~~~~~~----~~~~~----~~--------~~~~~~~~~~~~ 230 (256)
T cd06612 169 EVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM--RAIFMI----PNKPP----PT--------LSDPEKWSPEFN 230 (256)
T ss_pred HHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh--hhhhhh----ccCCC----CC--------CCchhhcCHHHH
Confidence 0 0112357777 5 677665431100 000000 00000 00 001122234577
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||+|.||++
T Consensus 231 ~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 231 DFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred HHHHHHHhcChhhCcCHHHHhc
Confidence 7888999999999999999985
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=167.46 Aligned_cols=116 Identities=28% Similarity=0.298 Sum_probs=89.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh---hhhHHHHHHHH-----------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA---FKSFDVACDMM-----------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~---~~~f~~e~~~~-----------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|++....... ...+..+..++ ..+|+||+++|+|
T Consensus 4 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L 83 (330)
T cd05586 4 GTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGEL 83 (330)
T ss_pred CCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChH
Confidence 468899998764 57899999986432211 11111122111 1378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
..++.. ...+++.....++.++++||+||| ..+|+||||||+||+++.++.++|+|||+++..
T Consensus 84 ~~~l~~-~~~~~~~~~~~~~~qil~al~~LH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~ 146 (330)
T cd05586 84 FWHLQK-EGRFSEDRAKFYIAELVLALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKAN 146 (330)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEecCCcCcCC
Confidence 888764 345888889999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=163.32 Aligned_cols=194 Identities=25% Similarity=0.319 Sum_probs=131.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.- .++..+++|.+..........+..++...+ .+|+||+++|+|..++..
T Consensus 30 g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 109 (296)
T cd06655 30 GASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTE 109 (296)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHh
Confidence 45788998874 568899999987654444445555555532 368999999999988754
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
..++|.++..++.++++|++||| +.+++||||||+||+++.++.+|++|||+++......... +
T Consensus 110 --~~l~~~~~~~i~~~l~~al~~LH---~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP 184 (296)
T cd06655 110 --TCMDEAQIAAVCRECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184 (296)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCc
Confidence 35899999999999999999999 6789999999999999999999999999987654332110 0
Q ss_pred c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
. ...+.++||| | ||+.|....- .. +.+.......... + ..+......+.
T Consensus 185 E~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~----~~-~~~~~~~~~~~~~-----~--------~~~~~~~~~~~ 246 (296)
T cd06655 185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN----PL-RALYLIATNGTPE-----L--------QNPEKLSPIFR 246 (296)
T ss_pred chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----HH-HHHHHHHhcCCcc-----c--------CCcccCCHHHH
Confidence 0 0112357777 5 6776654211 00 1111000000000 0 00112223466
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|+..+|++||++.+|++
T Consensus 247 ~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 247 DFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred HHHHHHhhcChhhCCCHHHHhh
Confidence 7889999999999999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-17 Score=166.98 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=93.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+++|.+..... .....+..|++.++ .+||||+++|+|.+++.
T Consensus 16 g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 95 (333)
T cd06650 16 GNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 95 (333)
T ss_pred CCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHH
Confidence 467899998865 578889998765422 22345666666543 27899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.. ..+++.....++.+++.|++|||+ ..+|+||||||+||+++.++.+|++|||+++.+.
T Consensus 96 ~~-~~~~~~~~~~~~~~l~~~l~~lH~--~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~ 155 (333)
T cd06650 96 KA-GRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 155 (333)
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHHh--cCCEEecCCChhhEEEcCCCCEEEeeCCcchhhh
Confidence 43 357888889999999999999995 2469999999999999999999999999997653
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=162.06 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=131.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||++++.+..+.
T Consensus 12 g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 91 (287)
T cd07848 12 GAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLE 91 (287)
T ss_pred cCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHH
Confidence 457889999875 578899998865321 22334445555532 3789999987765443
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
. ....+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 92 ~-~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y 167 (287)
T cd07848 92 E-MPNGVPPEKVRSYIYQLIKAIHWCH---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWY 167 (287)
T ss_pred h-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccCccccccccccccccccccccc
Confidence 2 2345888889999999999999999 678999999999999999999999999999876432110
Q ss_pred -ccc----cccccccccc--c-------CCCCCCCccCCCccchHH-----------HHHhhCCCC-cceeeeccccccc
Q 041082 533 -FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKS-----------WVNDLLPIS-VMEVVDVNLLSME 586 (639)
Q Consensus 533 -~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~-----------~~~~~~~~~-~~~~~d~~l~~~~ 586 (639)
.+. ...+.++|+| | +|+.|....-. ...+.. +........ .....-+......
T Consensus 168 ~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (287)
T cd07848 168 RSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESE-IDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQ 246 (287)
T ss_pred CCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcc
Confidence 000 1123378998 6 88877653210 000100 000000000 0000000000000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.............+.++..+|++.+|++|||+.|+++
T Consensus 247 ~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~ 283 (287)
T cd07848 247 SLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN 283 (287)
T ss_pred cHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 0000000112345889999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-17 Score=167.62 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=130.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|+.+++ .+|+||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 91 (291)
T cd05612 12 GTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSY 91 (291)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHH
Confidence 468899999865 578999999865432 22334555555432 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------c
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------T 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------~ 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++......... +
T Consensus 92 ~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aP 167 (291)
T cd05612 92 LRNS-GRFSNSTGLFYASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAP 167 (291)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCH
Confidence 8643 35888889999999999999999 6789999999999999999999999999998764332110 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | ||+.|.... ...+.......... .+ +...-..+.
T Consensus 168 E~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~------~~----------~~~~~~~~~ 226 (291)
T cd05612 168 EVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD-----NPFGIYEKILAGKL------EF----------PRHLDLYAK 226 (291)
T ss_pred HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCc------CC----------CccCCHHHH
Confidence 01123367888 6 777776421 11111111111100 00 001122456
Q ss_pred HHHhhccCCCCCCCCC-----HHHHHH
Q 041082 602 NLAMECTAESPKQRIN-----AKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~-----m~~v~~ 623 (639)
++..+|++.+|++||+ +.|+.+
T Consensus 227 ~li~~~l~~dp~~R~~~~~~~~~~~l~ 253 (291)
T cd05612 227 DLIKKLLVVDRTRRLGNMKNGADDVKN 253 (291)
T ss_pred HHHHHHcCCCHHHccCCccCCHHHHhc
Confidence 7888999999999995 777664
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-17 Score=165.35 Aligned_cols=117 Identities=30% Similarity=0.426 Sum_probs=94.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. ..+..+++|.+..........+..++..++ .+|+||+++++|.+++..
T Consensus 30 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 109 (297)
T cd06656 30 GASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 109 (297)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh
Confidence 45788999985 568999999987654433344555555432 368999999999998854
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
..+++.++..++.+++.|+.||| ..+++||||||+||+++.++.++++|||+++....
T Consensus 110 --~~~~~~~~~~~~~~l~~~L~~LH---~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~ 167 (297)
T cd06656 110 --TCMDEGQIAAVCRECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP 167 (297)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEECcCccceEccC
Confidence 34789999999999999999999 67899999999999999999999999999876543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-17 Score=169.02 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=132.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|...++ .+|+||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~ 91 (333)
T cd05600 12 GGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTL 91 (333)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHH
Confidence 468899999875 478999999875432 12334455555432 368999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------cc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--------FT 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--------~~ 534 (639)
+... ..+++.+...++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........ .+
T Consensus 92 l~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aP 167 (333)
T cd05600 92 LNNL-GVLSEDHARFYMAEMFEAVDALH---ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAP 167 (333)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccCh
Confidence 8643 35788888999999999999999 678999999999999999999999999999865431110 00
Q ss_pred c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
. ...+.++||| | ||+.|....- .......+... ..... .+.... ........+.
T Consensus 168 E~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~-~~~~~---~~~~~~-------~~~~~s~~~~ 234 (333)
T cd05600 168 EVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST--PNETWENLKYW-KETLQ---RPVYDD-------PRFNLSDEAW 234 (333)
T ss_pred hHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC--HHHHHHHHHhc-ccccc---CCCCCc-------cccccCHHHH
Confidence 0 1123367888 6 7777764311 11111111000 00000 000000 0011233466
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
++..+|+..+|++||++.++++.
T Consensus 235 ~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 235 DLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred HHHHHHhhChhhhcCCHHHHHhC
Confidence 78889999999999999999864
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=166.26 Aligned_cols=118 Identities=28% Similarity=0.423 Sum_probs=95.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..+...+. .+|+||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 91 (350)
T cd05573 12 GAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNL 91 (350)
T ss_pred CCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHH
Confidence 568899999865 688999999875431 22334445554432 368999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 92 l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~ 153 (350)
T cd05573 92 LIRK-DVFPEETARFYIAELVLALDSVH---KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNK 153 (350)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence 8754 46888889999999999999999 67899999999999999999999999999986654
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-17 Score=161.34 Aligned_cols=196 Identities=27% Similarity=0.470 Sum_probs=133.6
Q ss_pred CCcCcceEEEecC-----CceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD-----GMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.... +..+++|.+...... ....+..|+..++ .+++||+++++|.
T Consensus 10 g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~ 89 (258)
T smart00219 10 GAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLL 89 (258)
T ss_pred CCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHH
Confidence 4688999988754 378999998655432 3456666665532 2688999999999
Q ss_pred hccccCCcc-CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----
Q 041082 461 KCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----- 534 (639)
Q Consensus 461 ~~l~~~~~~-l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----- 534 (639)
+++...... +++.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||+++..........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 166 (258)
T smart00219 90 DYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKL 166 (258)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHHHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceecccccccccccCCC
Confidence 988753333 899999999999999999999 66899999999999999999999999999986654321100
Q ss_pred -----------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 535 -----------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 535 -----------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
....+.++|+| | + |+.|... .....+.+.+.. ... ...+
T Consensus 167 ~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~---~~~---------------~~~~ 226 (258)
T smart00219 167 PIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG--MSNEEVLEYLKK---GYR---------------LPKP 226 (258)
T ss_pred cccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhc---CCC---------------CCCC
Confidence 00112256666 4 3 4444332 011111111111 000 0011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRL 625 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l 625 (639)
......+.+++.+|+..+|++|||+.|+++.|
T Consensus 227 ~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 227 ENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred CcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 12344677899999999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-17 Score=162.51 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=134.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++.. ..+..+++|.+.... ......+..+++.++ .+++||+++++|.+
T Consensus 11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~ 90 (265)
T cd08217 11 GSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQ 90 (265)
T ss_pred CCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHH
Confidence 46889998875 467889999886432 122234444554422 36899999999998
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccC--CCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGY--STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-- 534 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~--~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-- 534 (639)
++.. ....+++.....++.+++.|++|||..+ ..+++||||||+||+++.++.+|++|||++...........
T Consensus 91 ~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~ 170 (265)
T cd08217 91 LIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTY 170 (265)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCccccccc
Confidence 8864 2456899999999999999999999665 77899999999999999999999999999987654332000
Q ss_pred ---------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 535 ---------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 535 ---------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
. ...+.++|+| | +|+.|..... ...+.+.+.. .... ..
T Consensus 171 ~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~----~~~~--------------~~ 230 (265)
T cd08217 171 VGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--QLQLASKIKE----GKFR--------------RI 230 (265)
T ss_pred ccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--HHHHHHHHhc----CCCC--------------CC
Confidence 0 0112356777 5 6766654211 1111111110 0000 01
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+......+.+++.+|++.+|++||+|.+|+++
T Consensus 231 ~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~ 262 (265)
T cd08217 231 PYRYSSELNEVIKSMLNVDPDKRPSTEELLQL 262 (265)
T ss_pred ccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence 12234567889999999999999999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-17 Score=165.34 Aligned_cols=115 Identities=26% Similarity=0.389 Sum_probs=90.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+..... .....+..+...+. .+|+||+++|+|..
T Consensus 6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~ 85 (316)
T cd05619 6 GSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMF 85 (316)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468899999875 468899999875431 11122222332221 27899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++.. ...+++.+...++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.
T Consensus 86 ~l~~-~~~~~~~~~~~~~~qi~~al~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~ 145 (316)
T cd05619 86 HIQS-CHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKE 145 (316)
T ss_pred HHHH-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEeCCCCHHHEEECCCCCEEEccCCcceE
Confidence 8864 245889999999999999999999 67899999999999999999999999999875
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=177.68 Aligned_cols=199 Identities=25% Similarity=0.374 Sum_probs=142.3
Q ss_pred CcCcceEEEecC--------CceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCC
Q 041082 408 GFGSIYKARIQD--------GMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHG 457 (639)
Q Consensus 408 g~g~vy~~~l~~--------g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~g 457 (639)
.||.|+++.+.+ ...||||.+..... ...+.+..|++.++. +|.||+..|
T Consensus 308 ~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G 387 (609)
T KOG0200|consen 308 AFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHG 387 (609)
T ss_pred cccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCC
Confidence 478888887531 35789998864433 234567777777553 578999999
Q ss_pred CchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.++|+... ..+.-...+.+|.|||+|++||+ +.+++|||+-++|||+.++..+||+|||+
T Consensus 388 ~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi~~~~~~kIaDFGl 464 (609)
T KOG0200|consen 388 DLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLITKNKVIKIADFGL 464 (609)
T ss_pred cHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEecCCCEEEEccccc
Confidence 9999997644 34888889999999999999999 77899999999999999999999999999
Q ss_pred cccccccCCCc-cc-----------------cccccccccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 523 AKLLLKEDQSF-TQ-----------------NTNTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 523 a~~~~~~~~~~-~~-----------------~~~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
||......... .. ..-+.++||| | -|..|+..+. ....+.++++
T Consensus 465 ar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~-~~~~l~~~l~------- 536 (609)
T KOG0200|consen 465 ARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP-PTEELLEFLK------- 536 (609)
T ss_pred eeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC-cHHHHHHHHh-------
Confidence 99654433211 10 1112255665 4 3444443210 0111122222
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+.+.+..|..++++++..||+.+|++||++.++++.++..
T Consensus 537 -----------~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 537 -----------EGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred -----------cCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 1223455667788899999999999999999999999999884
|
|
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-17 Score=164.60 Aligned_cols=116 Identities=28% Similarity=0.389 Sum_probs=90.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++ .+|+||++ +++.+++.
T Consensus 16 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 94 (303)
T cd07869 16 GSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMD 94 (303)
T ss_pred cCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHH
Confidence 457899999865 6789999998654322 1223444554432 26899996 57777766
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.....+++.....++.+++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 95 ~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~ 153 (303)
T cd07869 95 KHPGGLHPENVKLFLFQLLRGLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAK 153 (303)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceec
Confidence 54455888888999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=165.16 Aligned_cols=117 Identities=26% Similarity=0.399 Sum_probs=91.3
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhhh----hhhhhHHHHHHHHH---------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQYE----RAFKSFDVACDMMK---------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~~----~~~~~f~~e~~~~~---------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|++..... .....+..|..+++ .+|+||+++|
T Consensus 11 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g 90 (332)
T cd05614 11 GAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGG 90 (332)
T ss_pred cCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCC
Confidence 46888998765 2578899999864321 11223444444422 2689999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+|.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...
T Consensus 91 ~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~ 156 (332)
T cd05614 91 EMFTHLYQR-DNFSEDEVRFYSGEIILALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFL 156 (332)
T ss_pred cHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence 999888643 35888989999999999999999 6689999999999999999999999999998653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-17 Score=164.05 Aligned_cols=119 Identities=28% Similarity=0.346 Sum_probs=93.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++ .+||||+++|+|...
T Consensus 4 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~ 83 (280)
T cd05608 4 GGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYH 83 (280)
T ss_pred CCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHH
Confidence 468899998754 6789999998643321 2234445555533 268999999999877
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+.. ....+++..+..++.+++.||+||| +.+|+||||||+||+++.++.++++|||+++.+..
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~ 149 (280)
T cd05608 84 IYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD 149 (280)
T ss_pred HHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCccceecCC
Confidence 643 2346899999999999999999999 67899999999999999999999999999976543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=160.01 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=127.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL 459 (639)
+++|.||++.. ..+..+++|.+..... ....+..|+... ..+||||+++|+|
T Consensus 29 g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L 107 (286)
T cd06638 29 GTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSV 107 (286)
T ss_pred CCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCH
Confidence 45788999876 4578899998754221 112333333221 1478999999999
Q ss_pred hhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----
Q 041082 460 EKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---- 532 (639)
Q Consensus 460 ~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---- 532 (639)
.++++. ....+++.....++.++++|+.||| ..+++|||||++||+++.++.++++|||+++........
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~ 184 (286)
T cd06638 108 TDLVKGFLKRGERMEEPIIAYILHEALMGLQHLH---VNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTS 184 (286)
T ss_pred HHHHHHhhccCccccHHHHHHHHHHHHHHHHHHH---hCCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccc
Confidence 987753 2345788889999999999999999 678999999999999999999999999998765432110
Q ss_pred -------ccc---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 533 -------FTQ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 533 -------~~~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
.+. ...+.++||| | ||+.|..+. .....+... .........++.
T Consensus 185 ~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~----~~~~~~~~~-~~~~~~~~~~~~------ 253 (286)
T cd06638 185 VGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADL----HPMRALFKI-PRNPPPTLHQPE------ 253 (286)
T ss_pred cCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCC----chhHHHhhc-cccCCCcccCCC------
Confidence 000 0012367777 5 666665421 001111000 000000111111
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+...+.+++.+|++.+|++||++.||++.
T Consensus 254 -------~~~~~~~~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 254 -------LWSNEFNDFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred -------CcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence 112357788999999999999999999875
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=161.08 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=129.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL 459 (639)
+++|.+|++.. .++..+++|.+...... ...+..+...+ ..+|+||+++|+|
T Consensus 33 g~~~~vy~~~~~~~~~~~aik~~~~~~~~-~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL 111 (291)
T cd06639 33 GTYGKVYKVTNKKDGSLAAVKILDPISDV-DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSV 111 (291)
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccH-HHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcH
Confidence 45788999886 46788999988643211 12222333221 1368999999999
Q ss_pred hhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----
Q 041082 460 EKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---- 532 (639)
Q Consensus 460 ~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---- 532 (639)
.++++. ....++|..+..++.+++.||+||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~ 188 (291)
T cd06639 112 TELVKGLLICGQRLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTS 188 (291)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCc
Confidence 988753 2346899999999999999999999 668999999999999999999999999998865432110
Q ss_pred -------cccc---------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 533 -------FTQN---------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 533 -------~~~~---------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
.+.. ..+.++|+| | ||+.|...... ...+..+.+. ....+.+
T Consensus 189 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~-~~~~~~~~~~----~~~~~~~-------- 255 (291)
T cd06639 189 VGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP-VKTLFKIPRN----PPPTLLH-------- 255 (291)
T ss_pred cCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH-HHHHHHHhcC----CCCCCCc--------
Confidence 0100 013467777 5 67776643210 1111111110 0001111
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++....+.+++.+|++.+|++||+|.|+++
T Consensus 256 -----~~~~~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 256 -----PEKWCRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred -----ccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 1122345788999999999999999999986
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-17 Score=159.92 Aligned_cols=195 Identities=20% Similarity=0.264 Sum_probs=129.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... .+..+++|.++... ......+..|...++ .+++||+++|++.+++.
T Consensus 11 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~ 90 (255)
T cd08219 11 GSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIK 90 (255)
T ss_pred cCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHH
Confidence 457888888754 57889999876432 222344445544432 36899999999988875
Q ss_pred c-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----------
Q 041082 465 S-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---------- 533 (639)
Q Consensus 465 ~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---------- 533 (639)
. ....++......++.+++.|+.||| ..+|+|+||||+||+++.++.++++|||+++.........
T Consensus 91 ~~~~~~~~~~~~~~~~~~i~~al~~lH---~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ 167 (255)
T cd08219 91 LQRGKLFPEDTILQWFVQMCLGVQHIH---EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYV 167 (255)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCcccc
Confidence 4 2345788889999999999999999 6789999999999999999999999999997664322110
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.++|+| | +|+.|.... +............ ...+ +......
T Consensus 168 aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~-----~~~~~~~~~~~~~-~~~~--------------~~~~~~~ 227 (255)
T cd08219 168 PPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN-----SWKNLILKVCQGS-YKPL--------------PSHYSYE 227 (255)
T ss_pred CHHHHccCCcCchhhhhhhchhheehhhccCCCCCC-----CHHHHHHHHhcCC-CCCC--------------CcccCHH
Confidence 00 1122367777 5 666665421 1111111110000 0000 1112234
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|++||++.+++.+
T Consensus 228 ~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 228 LRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHHHHHHHhCCcccCCCHHHHhhc
Confidence 6678889999999999999999865
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=160.13 Aligned_cols=196 Identities=22% Similarity=0.269 Sum_probs=129.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++ .+|+||+++|++..+.
T Consensus 12 g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~- 90 (279)
T cd06619 12 GNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYR- 90 (279)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHhh-
Confidence 45788999975 567899999886432 222345666666533 2689999999886542
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------ccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------FTQ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------~~~ 535 (639)
.+++.....++.+++.|++||| ..+|+|+||||+||+++.++.++++|||++......... .+.
T Consensus 91 ----~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE 163 (279)
T cd06619 91 ----KIPEHVLGRIAVAVVKGLTYLW---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPE 163 (279)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCce
Confidence 3678888899999999999999 678999999999999999999999999999765432111 000
Q ss_pred ----cccccccccc--c-------CCCCCCCccCCCccc--hHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMT--LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~--l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|.......... ..++........ .+.+.. ......+
T Consensus 164 ~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~ 229 (279)
T cd06619 164 RISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDED-----PPVLPV---------GQFSEKF 229 (279)
T ss_pred eecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccC-----CCCCCC---------CcCCHHH
Confidence 1123478888 6 788776543221110 011111111000 011100 0112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++.+|++.+|++||++.||+..
T Consensus 230 ~~li~~~l~~~P~~Rp~~~eil~~ 253 (279)
T cd06619 230 VHFITQCMRKQPKERPAPENLMDH 253 (279)
T ss_pred HHHHHHHhhCChhhCCCHHHHhcC
Confidence 788889999999999999999864
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=161.49 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=93.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|.+...... ....+..|+..++ .+|+||+++|+|..+
T Consensus 11 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 90 (285)
T cd05605 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFH 90 (285)
T ss_pred CCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHH
Confidence 46789999885 46789999998643321 1223444555432 378999999999988
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... ...+++.....++.+++.|++||| ..+++||||||+||++++++.++++|||+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~ 153 (285)
T cd05605 91 IYNMGNPGFDEERAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIP 153 (285)
T ss_pred HHhcCcCCCCHHHHHHHHHHHHHHHHHHH---HCCcEecCCCHHHEEECCCCCEEEeeCCCceecC
Confidence 7642 345899999999999999999999 6689999999999999999999999999998654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=160.66 Aligned_cols=212 Identities=23% Similarity=0.290 Sum_probs=133.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-----hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-----AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.+|++... ++..+++|.+...... ....+..|++.++ .+|+||+ +|+|.
T Consensus 11 g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~ 89 (298)
T cd07841 11 GTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLE 89 (298)
T ss_pred ccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc-CCCHH
Confidence 457889999864 5789999998654322 1223333443322 3789999 89999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
+++......++|..+..++.++++||+||| ..+++||||||+||+++.++.++|+|||+++.........
T Consensus 90 ~~i~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~ 166 (298)
T cd07841 90 KVIKDKSIVLTPADIKSYMLMTLRGLEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTR 166 (298)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccce
Confidence 998764446899999999999999999999 6679999999999999999999999999998765321110
Q ss_pred ----cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC--------cceeeeccccccc
Q 041082 534 ----TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS--------VMEVVDVNLLSME 586 (639)
Q Consensus 534 ----~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~--------~~~~~d~~l~~~~ 586 (639)
+. ...+.++|+| | +|..|....- +...+....+.. .+.. .............
T Consensus 167 ~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (298)
T cd07841 167 WYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS-DIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPT 245 (298)
T ss_pred eeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc-cHHHHHHHHHHcCCCchhhhhhcccccccccccccCCc
Confidence 00 0113368888 6 6755443211 100011110000 0000 0000000000000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. ...........+.+++.+|++.+|++||++.||++.
T Consensus 246 ~-~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~ 282 (298)
T cd07841 246 P-LKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH 282 (298)
T ss_pred c-hhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 0 000012234567889999999999999999999873
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=164.19 Aligned_cols=115 Identities=29% Similarity=0.357 Sum_probs=90.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+..... .....+..+..++. .+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (318)
T cd05570 6 GSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMF 85 (318)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHH
Confidence 468899999875 468899999875431 11222333333321 26899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+... ..+++.+...++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++.
T Consensus 86 ~~~~~-~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~ 145 (318)
T cd05570 86 HIQRS-GRFDEPRARFYAAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKE 145 (318)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEccCCCHHHeEECCCCcEEecccCCCee
Confidence 87643 35899999999999999999999 67899999999999999999999999999875
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=165.41 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=91.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+|+|++..... .....+..|..++. .+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (327)
T cd05617 6 GSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMF 85 (327)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 457899998864 568899999875432 22233444444321 27899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++... ..+++..+..++.++++|++||| ..+|+||||||+||+++.++.+||+|||+++.
T Consensus 86 ~~~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~ 145 (327)
T cd05617 86 HMQRQ-RKLPEEHARFYAAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKE 145 (327)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEeCCCCEEEecccccee
Confidence 77542 35899999999999999999999 67899999999999999999999999999875
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=165.43 Aligned_cols=116 Identities=27% Similarity=0.325 Sum_probs=91.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+..... .....+..|...+ ..+||||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~ 85 (329)
T cd05618 6 GSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMF 85 (329)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHH
Confidence 468899999864 568899999875421 1222333444332 137899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 ~~~~~-~~l~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~ 146 (329)
T cd05618 86 HMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 146 (329)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence 77543 35889999999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-17 Score=163.23 Aligned_cols=201 Identities=19% Similarity=0.249 Sum_probs=131.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|.+...... ....+..|.++++ .+|+||+++|+|.++
T Consensus 4 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~ 83 (277)
T cd05607 4 GGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYH 83 (277)
T ss_pred CCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHH
Confidence 468899998764 5899999998643321 1223333444432 378999999999887
Q ss_pred ccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------
Q 041082 463 LYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 463 l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------- 533 (639)
+.. ....++|..+..++.+++.|++||| ..+|+||||||+||+++.++.++|+|||++..........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y 160 (277)
T cd05607 84 IYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGY 160 (277)
T ss_pred HHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCc
Confidence 754 3345899999999999999999999 6789999999999999999999999999987654321100
Q ss_pred --c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+ ....+.++||| | +|+.|....- ....-.++........ +... ......
T Consensus 161 ~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~-~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~ 224 (277)
T cd05607 161 MAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHK-EKVAKEELKRRTLEDE--------VKFE-------HQNFTE 224 (277)
T ss_pred cCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCc-chhhHHHHHHHhhccc--------cccc-------cccCCH
Confidence 0 01122366777 5 6776654211 1111111111111110 0000 011123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.+.+++..|++.+|++||+++|+++.+.
T Consensus 225 ~~~~li~~~L~~~P~~R~~~~~~~~~~~ 252 (277)
T cd05607 225 ESKDICRLFLAKKPEDRLGSREKNDDPR 252 (277)
T ss_pred HHHHHHHHHhccCHhhCCCCccchhhhh
Confidence 4678889999999999999988775443
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=162.37 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=127.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|+|.+...... ...+..++..+ ..+++||+++|+
T Consensus 17 g~~g~vy~~~~~~~~~~~aik~~~~~~~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~ 95 (272)
T cd06637 17 GTYGQVYKGRHVKTGQLAAIKVMDVTGDE-EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGS 95 (272)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEEEcCCcc-HHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCc
Confidence 457899999864 5788999998654322 22344443331 136899999999
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
|.+++... ...++|.....++.+++.|++||| ..+|+|||||++||+++.++.++++|||+++........
T Consensus 96 L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~ 172 (272)
T cd06637 96 VTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI 172 (272)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCccc
Confidence 99988753 345899999999999999999999 567999999999999999999999999999765322110
Q ss_pred ------ccc---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 533 ------FTQ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 533 ------~~~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
.+. ...+.++||| | +|+.|..+.. ....+... ... ..+.+.
T Consensus 173 g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~----~~~~~~~~--~~~----~~~~~~----- 237 (272)
T cd06637 173 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH----PMRALFLI--PRN----PAPRLK----- 237 (272)
T ss_pred ccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC----HHHHHHHH--hcC----CCCCCC-----
Confidence 000 0112256666 4 5665553211 01111000 000 000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+...+.+++.+|+..+|.+||++.||++
T Consensus 238 ----~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 238 ----SKKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred ----CCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 0122345678889999999999999999875
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=158.96 Aligned_cols=194 Identities=26% Similarity=0.328 Sum_probs=131.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-----hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-----RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-----~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.+|++... ++..+++|.+..... ...+.+..++++++ .+++||+++++|.
T Consensus 11 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 90 (258)
T cd06632 11 GSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLA 90 (258)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHH
Confidence 467899999876 788999998765331 23345566665532 2689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
+++... ..+++..+..++.+++.|++||| ..+++|+|||++||+++.++.+||+|||+++........
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~ 166 (258)
T cd06632 91 KLLKKY-GSFPEPVIRLYTRQILLGLEYLH---DRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPY 166 (258)
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcc
Confidence 988643 35889999999999999999999 668999999999999999999999999998765432200
Q ss_pred --ccc----cc-cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 --FTQ----NT-NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 --~~~----~~-~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+. .. .+.++|+| | +|+.|..+.. ....+..+.. ......+ +...
T Consensus 167 y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~-~~~~~~~~~~----~~~~~~~--------------~~~~ 227 (258)
T cd06632 167 WMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE-GVAAVFKIGR----SKELPPI--------------PDHL 227 (258)
T ss_pred eeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc-HHHHHHHHHh----cccCCCc--------------CCCc
Confidence 000 01 23367777 5 6777754321 0000111110 0000000 0111
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.++..+|++.+|++||+|.+++.
T Consensus 228 ~~~~~~li~~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 228 SDEAKDFILKCLQRDPSLRPTAAELLE 254 (258)
T ss_pred CHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence 234566888999999999999999975
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-17 Score=167.22 Aligned_cols=116 Identities=28% Similarity=0.344 Sum_probs=89.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+..... .....+..+.... ..+|+||+++|+|..
T Consensus 6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~ 85 (316)
T cd05592 6 GSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMF 85 (316)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHH
Confidence 468899999875 467899999865321 1111222222221 127899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..++..+...++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 86 ~~~~~-~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~ 146 (316)
T cd05592 86 HIQSS-GRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKEN 146 (316)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHeEECCCCCEEEccCcCCeEC
Confidence 88643 35788888999999999999999 678999999999999999999999999999754
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-17 Score=147.91 Aligned_cols=204 Identities=21% Similarity=0.241 Sum_probs=138.9
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL~ 460 (639)
.||.-||.+. +..+..+|+|++-.+..+.......|++..+ ++++.|...|+|.
T Consensus 32 GGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~ 111 (302)
T KOG2345|consen 32 GGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLL 111 (302)
T ss_pred CCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHH
Confidence 3555566554 4567889999987776555555555555522 3667888899998
Q ss_pred hcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc---cCCC--
Q 041082 461 KCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK---EDQS-- 532 (639)
Q Consensus 461 ~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~---~~~~-- 532 (639)
+.+.. ++..++..+.+.|+.||.+||++||.. .|+..||||||.|||+.+++.+++.|||=+....- +...
T Consensus 112 d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~ 190 (302)
T KOG2345|consen 112 DEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQAL 190 (302)
T ss_pred HHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHH
Confidence 87754 445689999999999999999999954 67899999999999999999999999997654421 1100
Q ss_pred ---------c-------------cccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecc
Q 041082 533 ---------F-------------TQNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVN 581 (639)
Q Consensus 533 ---------~-------------~~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 581 (639)
. ...+-+.+.||| | -|.+|++-.++.|.++.- -+..+.
T Consensus 191 ~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaL-----------Av~n~q 259 (302)
T KOG2345|consen 191 RLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLAL-----------AVQNAQ 259 (302)
T ss_pred HHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEE-----------eeeccc
Confidence 0 001112277888 6 466777665555544422 122222
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+.-+.. ......+.++.-.|++.+|.+||+..+++..+...
T Consensus 260 ~s~P~~------~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L 300 (302)
T KOG2345|consen 260 ISIPNS------SRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL 300 (302)
T ss_pred cccCCC------CCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence 211100 01233566677799999999999999999988754
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-17 Score=159.47 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=130.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-hhhHHHHHHHH--------------------HhhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-FKSFDVACDMM--------------------KKLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-~~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~~l~ 464 (639)
+.||.||+|.. ..++.||+|++++..... ..+...++... -.++||||.+|++.+.+.
T Consensus 24 GsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~ 103 (467)
T KOG0201|consen 24 GSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLK 103 (467)
T ss_pred cccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhc
Confidence 45899999985 457899999999876432 22333333221 126899999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN------ 538 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~------ 538 (639)
... .++.....-|...+..|+.|+| ....+|||||+.||++..++.+|++|||.+.++..........++
T Consensus 104 ~~~-~~~E~~i~~ilre~l~~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMA 179 (467)
T KOG0201|consen 104 SGN-ILDEFEIAVILREVLKGLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMA 179 (467)
T ss_pred cCC-CCccceeeeehHHHHHHhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccc
Confidence 532 3355555556778999999999 678999999999999999999999999999888754432111111
Q ss_pred ---------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 539 ---------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 539 ---------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
..|+|+| | +|..|..+.+.-.+ .-.+|.+ .-|.+.+ .+-..+
T Consensus 180 PEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv------lflIpk~----~PP~L~~----------~~S~~~ 239 (467)
T KOG0201|consen 180 PEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV------LFLIPKS----APPRLDG----------DFSPPF 239 (467)
T ss_pred hhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE------EEeccCC----CCCcccc----------ccCHHH
Confidence 1278888 6 77777665432100 0001111 1122211 233346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+-.|+..+|+.||++.+.++
T Consensus 240 kEFV~~CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 240 KEFVEACLDKNPEFRPSAKELLK 262 (467)
T ss_pred HHHHHHHhhcCcccCcCHHHHhh
Confidence 67778999999999999999885
|
|
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=157.75 Aligned_cols=200 Identities=24% Similarity=0.269 Sum_probs=135.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... .+..+++|.+..... .....+..+++.++ .+++||+++++|.+++.
T Consensus 12 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 91 (265)
T cd06605 12 GNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILK 91 (265)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHH
Confidence 457889998875 578899998865432 23344555555432 26789999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCC-CCeEeecCCCCceeecCCcceeeccccccccccccCCC---------cc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYS-TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------FT 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~-~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------~~ 534 (639)
.....++......++.+++.|++|+| . .+++|||||+.||+++.++.++++|||.+......... .+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~P 168 (265)
T cd06605 92 EVQGRIPERILGKIAVAVLKGLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAP 168 (265)
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCH
Confidence 54456888888999999999999999 5 78999999999999999999999999998765321110 00
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | +|+.|............+.+........ +.+. .......+.
T Consensus 169 E~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~ 234 (265)
T cd06605 169 ERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPP-----PRLP---------SGKFSPDFQ 234 (265)
T ss_pred HHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCC-----CCCC---------hhhcCHHHH
Confidence 01223367888 6 7777765332111223333322221110 0000 001233467
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|+..+|++||++.+++.
T Consensus 235 ~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 235 DFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred HHHHHHcCCCchhCcCHHHHhh
Confidence 8888999999999999999975
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=159.01 Aligned_cols=195 Identities=21% Similarity=0.342 Sum_probs=130.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|.+... ++..+++|.+..... .....+..++...+ .++|||+++++|.++
T Consensus 11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~ 90 (257)
T cd08223 11 GSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHK 90 (257)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHH
Confidence 457889988754 468899999865332 22334444544421 368999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------- 533 (639)
+... ...+++.++.+++.+++.|++|+| ..+++||||||+||+++.++.++++|||+++.........
T Consensus 91 l~~~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~ 167 (257)
T cd08223 91 LKEQKGKLLPENQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPY 167 (257)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcC
Confidence 8752 345899999999999999999999 6789999999999999999999999999998664321100
Q ss_pred ---cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 534 ---TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 534 ---~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
+. ...+.++|+| | ||+.|.+. .+...++........ +. .+....
T Consensus 168 y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~-----~~~~~~~~~~~~~~~-----~~----------~~~~~~ 227 (257)
T cd08223 168 YMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNA-----KDMNSLVYRIIEGKL-----PP----------MPKDYS 227 (257)
T ss_pred ccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCC-----CCHHHHHHHHHhcCC-----CC----------CccccC
Confidence 00 0112256777 5 66666532 112222211111100 00 011222
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.+++.+|++.+|++||+|.++++.
T Consensus 228 ~~~~~li~~~l~~~p~~Rp~~~~~l~~ 254 (257)
T cd08223 228 PELGELIATMLSKRPEKRPSVKSILRQ 254 (257)
T ss_pred HHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 357788999999999999999999753
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=160.03 Aligned_cols=205 Identities=20% Similarity=0.224 Sum_probs=138.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+++|.+.... ......+..|++..+ .+|+||+++|+|.+++.
T Consensus 16 g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 95 (284)
T cd06620 16 GNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYK 95 (284)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHH
Confidence 457899998864 57889999875432 223345666666543 37899999999998876
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------ccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------FTQ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------~~~ 535 (639)
.. ..++|.....++.++++|+.|||+ ..+++||||||+||++++++.++++|||+++........ .+.
T Consensus 96 ~~-~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE 172 (284)
T cd06620 96 KG-GPIPVEILGKIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPE 172 (284)
T ss_pred hc-cCCCHHHHHHHHHHHHHHHHHHHH--hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHH
Confidence 43 358899999999999999999995 246999999999999999999999999998754321110 000
Q ss_pred ----cccccccccc--c-------CCCCCCCccCCC------ccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ----NTNTCHHRIY--G-------TRRNPQMNFFSG------EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ----~~~~~~~dvy--G-------tg~~p~~~~~~~------~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++|+| | ||+.|.+..... ...+.+++.....+. .+.+. ..+.
T Consensus 173 ~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------~~~~ 238 (284)
T cd06620 173 RIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP-----PPRLP---------SSDF 238 (284)
T ss_pred HHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc-----CCCCC---------chhc
Confidence 1123378888 6 787776543211 111222222222111 00000 0123
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
...+.+++.+|++.+|++||+|.||+++..-+
T Consensus 239 ~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~ 270 (284)
T cd06620 239 PEDLRDFVDACLLKDPTERPTPQQLCAMPPFI 270 (284)
T ss_pred CHHHHHHHHHHhcCCcccCcCHHHHhcCcccc
Confidence 34577888999999999999999999875433
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=158.58 Aligned_cols=194 Identities=23% Similarity=0.262 Sum_probs=132.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. .++..+++|+++.........+..++..++ .+++||+++++|.+++..
T Consensus 30 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~ 109 (285)
T cd06648 30 GSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH 109 (285)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh
Confidence 45788999875 467899999887654444445555555432 267899999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
..+++.....++.+++.|++||| ..+++||||||+||+++.++.++++|||++.......... +
T Consensus 110 --~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aP 184 (285)
T cd06648 110 --TRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 184 (285)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCH
Confidence 45889999999999999999999 6789999999999999999999999999887554321100 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | +|+.|... . .-..++....... .+.+. ........+.
T Consensus 185 E~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~----~-~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~l~ 246 (285)
T cd06648 185 EVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFN----E-PPLQAMKRIRDNL-----PPKLK--------NLHKVSPRLR 246 (285)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcC----C-CHHHHHHHHHhcC-----CCCCc--------ccccCCHHHH
Confidence 01123367777 5 67766532 1 1112221111110 00000 0111234678
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||++.++++
T Consensus 247 ~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 247 SFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred HHHHHHcccChhhCcCHHHHcc
Confidence 8999999999999999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=157.63 Aligned_cols=199 Identities=23% Similarity=0.333 Sum_probs=130.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh----------hhhhHHHHHHHHH--------------------hhhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER----------AFKSFDVACDMMK--------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~----------~~~~f~~e~~~~~--------------------~Lv~ey~~ 455 (639)
.++|.||++.. .+|..+|+|.+...... ..+.+..|+..++ .+|+||++
T Consensus 12 g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 91 (272)
T cd06629 12 GTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVP 91 (272)
T ss_pred cCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCC
Confidence 46789999875 46789999987542211 1223445554432 36899999
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+|+|.+++... ..+++..+..++.+++.|+.||| ..+++|||||+.||+++.++.++++|||+++........
T Consensus 92 ~~~L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~ 167 (272)
T cd06629 92 GGSIGSCLRTY-GRFEEQLVRFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQN 167 (272)
T ss_pred CCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHh---hCCeeecCCChhhEEEcCCCeEEEeecccccccccccccccc
Confidence 99999988754 45889999999999999999999 568999999999999999999999999998754321100
Q ss_pred ----------ccc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 533 ----------FTQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 533 ----------~~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
.+. ...+.++|+| | +|+.|..+ ......+... ........++...
T Consensus 168 ~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~----- 237 (272)
T cd06629 168 MSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSD----EEAIAAMFKL-GNKRSAPPIPPDV----- 237 (272)
T ss_pred ccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcC----cchHHHHHHh-hccccCCcCCccc-----
Confidence 000 0112356777 5 66666532 1111111110 0000001111111
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+....+.+++..|+..+|++||+|.+|++.
T Consensus 238 -----~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 269 (272)
T cd06629 238 -----SMNLSPVALDFLNACFTINPDNRPTARELLQH 269 (272)
T ss_pred -----cccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence 11223467778889999999999999999863
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=159.01 Aligned_cols=202 Identities=22% Similarity=0.269 Sum_probs=135.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++... .+..+++|.+..... .....+..|++.++ .+||||+++++|.++
T Consensus 12 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 91 (287)
T cd06621 12 GAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSI 91 (287)
T ss_pred CCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHH
Confidence 456789998874 578899998864432 22344555665532 368999999999887
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
+.. ....+++.....++.++++||+||| ..+++|+||++.||+++.++.++++|||++.........
T Consensus 92 l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 168 (287)
T cd06621 92 YKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSF 168 (287)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCcc
Confidence 653 2345788889999999999999999 678999999999999999999999999998754322110
Q ss_pred --ccc----cccccccccc--c-------CCCCCCCccCC---CccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 533 --FTQ----NTNTCHHRIY--G-------TRRNPQMNFFS---GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 533 --~~~----~~~~~~~dvy--G-------tg~~p~~~~~~---~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
.+. ...+.++||| | ||+.|...... ....+..|+.........+..+.. .
T Consensus 169 y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 236 (287)
T cd06621 169 YMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNG------------I 236 (287)
T ss_pred ccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCC------------C
Confidence 010 1223478998 6 78888764311 112233333221111111010000 0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....+.+++..|++.+|++||||.||++
T Consensus 237 ~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 237 KWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred chHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 12345678999999999999999999997
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=162.10 Aligned_cols=211 Identities=19% Similarity=0.222 Sum_probs=132.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++ .+|+||++ ++|...+.
T Consensus 17 g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~ 95 (301)
T cd07873 17 GTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLD 95 (301)
T ss_pred CcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHH
Confidence 467899999764 5788999988654322 1223444555432 26899997 58888876
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------F 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~ 533 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.++++|||+++........ .
T Consensus 96 ~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~ 172 (301)
T cd07873 96 DCGNSINMHNVKLFLFQLLRGLNYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRP 172 (301)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccC
Confidence 55556889999999999999999999 778999999999999999999999999998764322110 0
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC----cceeeecccccc---ccccccc
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLLSM---EDKYFTT 592 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~~~---~~~~~~~ 592 (639)
+. ...+.++||| | ||+.|.... ........+....... .....+..-... .......
T Consensus 173 PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (301)
T cd07873 173 PDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADC 250 (301)
T ss_pred cHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCChhhchhhhccccccccccCcccccc
Confidence 00 0122368999 7 888776532 1111111111111110 000100000000 0000000
Q ss_pred ----hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 ----KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ----~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++|||+.||++
T Consensus 251 ~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~ 285 (301)
T cd07873 251 LHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK 285 (301)
T ss_pred HHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 0112234678899999999999999999986
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=162.83 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=129.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..+..+++|.+..........+..|+..++ .+|+||+++++|.+++..
T Consensus 33 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 112 (292)
T cd06658 33 GSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTH 112 (292)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhc
Confidence 46788998875 457899999987654444444555554422 368999999999988754
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
..+++.....++.+++.|++||| ..+|+||||||+||+++.++.++++|||++.......... +
T Consensus 113 --~~l~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aP 187 (292)
T cd06658 113 --TRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAP 187 (292)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCH
Confidence 34789999999999999999999 6689999999999999999999999999987543221100 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | +|+.|.... ... +-+.. . ...+.+.+.. .......+.
T Consensus 188 E~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~----~~~-~~~~~-~----~~~~~~~~~~--------~~~~~~~~~ 249 (292)
T cd06658 188 EVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE----PPL-QAMRR-I----RDNLPPRVKD--------SHKVSSVLR 249 (292)
T ss_pred HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC----CHH-HHHHH-H----HhcCCCcccc--------ccccCHHHH
Confidence 01122367777 5 666665321 000 00000 0 0011111110 001122455
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
++...|+..+|++|||+.||++.
T Consensus 250 ~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 250 GFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred HHHHHHccCChhHCcCHHHHhhC
Confidence 67789999999999999999964
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=159.56 Aligned_cols=195 Identities=19% Similarity=0.298 Sum_probs=132.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++.. .+|..+++|.+.... ......+..++...+ .+|+||+++++|.+.+
T Consensus 11 g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 90 (256)
T cd08218 11 GSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKI 90 (256)
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHH
Confidence 35778888775 467899999986542 222345556655533 2689999999999988
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
... ...+++.+..+++.+++.|++||| ..+++|+||+++||+++.++.++++|||++..........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 167 (256)
T cd08218 91 NAQRGVLFPEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYY 167 (256)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccc
Confidence 653 235789999999999999999999 5689999999999999999999999999997654322100
Q ss_pred --c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+ ....+.++|+| | ||+.|... ....+.+......... +.+.....
T Consensus 168 ~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~-----~~~~~~~~~~~~~~~~---------------~~~~~~~~ 227 (256)
T cd08218 168 LSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA-----GNMKNLVLKIIRGSYP---------------PVSSHYSY 227 (256)
T ss_pred cCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC-----CCHHHHHHHHhcCCCC---------------CCcccCCH
Confidence 0 01123367777 5 66666532 1122222221111100 01112234
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||+|.||++.
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~vl~~ 253 (256)
T cd08218 228 DLRNLVSQLFKRNPRDRPSVNSILEK 253 (256)
T ss_pred HHHHHHHHHhhCChhhCcCHHHHhhC
Confidence 57788899999999999999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=157.61 Aligned_cols=198 Identities=21% Similarity=0.335 Sum_probs=130.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... ....+++|.+...... ....+..|+..++ .+|+||+++|+|
T Consensus 16 g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 95 (275)
T cd05046 16 GEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDL 95 (275)
T ss_pred cceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcH
Confidence 568899998864 2467889987654433 3455666666533 368899999999
Q ss_pred hhccccCC--------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC
Q 041082 460 EKCLYSSN--------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 460 ~~~l~~~~--------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~ 531 (639)
.+++.... ..++|..+..++.+++.||+||| ..+|+||||||.||+++.++.++++|||+++.......
T Consensus 96 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~ 172 (275)
T cd05046 96 KQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY 172 (275)
T ss_pred HHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhh---hcCcccCcCccceEEEeCCCcEEEcccccccccCcccc
Confidence 99886422 15899999999999999999999 66799999999999999999999999999875432211
Q ss_pred C-ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 532 S-FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 532 ~-~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
. ... ...+.++||| | + |..|..+.. ...+..... ..... .
T Consensus 173 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~--~~~~~~~~~---~~~~~-~-------- 238 (275)
T cd05046 173 YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS--DEEVLNRLQ---AGKLE-L-------- 238 (275)
T ss_pred cccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc--hHHHHHHHH---cCCcC-C--------
Confidence 0 000 0011245555 4 2 333332110 000111100 00000 0
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
.....+...+.+++.+|++.+|++||++.|++.+|.
T Consensus 239 -----~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 239 -----PVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred -----CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 001123346788999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=160.65 Aligned_cols=193 Identities=26% Similarity=0.350 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... ++..+++|.+.... ......+..|+++.+ .+|+||+++++|.+++.
T Consensus 12 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~ 91 (274)
T cd06609 12 GSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLK 91 (274)
T ss_pred CCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHh
Confidence 568899999865 57899999987543 222345556665533 26889999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
.. .+++.....++.+++.|+.||| ..+++||||+|+||++++++.++++|||+++.........
T Consensus 92 ~~--~~~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~ 166 (274)
T cd06609 92 PG--KLDETYIAFILREVLLGLEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMA 166 (274)
T ss_pred hc--CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccC
Confidence 53 6899999999999999999999 6779999999999999999999999999998765331100
Q ss_pred cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
+. ...+.++||| | ||+.|....-. .+.... .... ..+.+.. ......+
T Consensus 167 PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~-----~~~~~~-~~~~----~~~~~~~---------~~~~~~~ 227 (274)
T cd06609 167 PEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP-----MRVLFL-IPKN----NPPSLEG---------NKFSKPF 227 (274)
T ss_pred hhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch-----HHHHHH-hhhc----CCCCCcc---------cccCHHH
Confidence 00 0123367777 5 77777642110 011100 0000 0000000 0022346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|+..+|++||+|.++++
T Consensus 228 ~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 228 KDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred HHHHHHHhhCChhhCcCHHHHhh
Confidence 67888999999999999999986
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=163.64 Aligned_cols=116 Identities=25% Similarity=0.408 Sum_probs=91.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++ .+|+||+++ ++.+++.
T Consensus 17 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~ 95 (309)
T cd07872 17 GTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-DLKQYMD 95 (309)
T ss_pred cCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-CHHHHHH
Confidence 568899999864 5688999998754322 1223444555433 268999975 7877776
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~ 154 (309)
T cd07872 96 DCGNIMSMHNVKIFLYQILRGLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAK 154 (309)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceec
Confidence 54456889989999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=165.57 Aligned_cols=116 Identities=31% Similarity=0.333 Sum_probs=90.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHH-H--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDM-M--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... +|..+|+|.+...... ....+..+... + ..+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~ 85 (323)
T cd05575 6 GSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFF 85 (323)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHH
Confidence 468899999874 6889999998654321 11222222221 1 137899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 86 ~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~ 146 (323)
T cd05575 86 HLQRE-RSFPEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEG 146 (323)
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHeEECCCCcEEEeccCCCccc
Confidence 88643 35788888999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=159.21 Aligned_cols=212 Identities=21% Similarity=0.209 Sum_probs=133.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... ++..+++|++..... ...+.+..|+.+++ .+|+||++++.+..+.
T Consensus 12 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~ 91 (286)
T cd07847 12 GSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELE 91 (286)
T ss_pred cCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHH
Confidence 457889999876 578999998754321 12234555665533 2689999998887766
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...++|..+..++.+++.||+||| ..+++||||||+||+++.++.++++|||++.........
T Consensus 92 ~~-~~~~~~~~~~~~~~ql~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ 167 (286)
T cd07847 92 KN-PRGVPEHLIKKIIWQTLQAVNFCH---KHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYR 167 (286)
T ss_pred hC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccC
Confidence 43 235899999999999999999999 678999999999999999999999999999876443210
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC--CCcceeeecc-----cccccccccc
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP--ISVMEVVDVN-----LLSMEDKYFT 591 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~--~~~~~~~d~~-----l~~~~~~~~~ 591 (639)
.+. ...+.++|+| | ||+.|....... ..+..+...... ....+..++. +.........
T Consensus 168 aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (286)
T cd07847 168 APELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDV-DQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETRE 246 (286)
T ss_pred CHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChHHhhhcccccccccccCCCccccc
Confidence 000 1123478888 6 888776532111 111111110000 0000111110 0000000000
Q ss_pred ch----HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TK----KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~----~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.. ......+.+++.+|++.+|++||++.|++.
T Consensus 247 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~ 282 (286)
T cd07847 247 PLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE 282 (286)
T ss_pred CHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence 00 111345778999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=178.39 Aligned_cols=117 Identities=26% Similarity=0.303 Sum_probs=93.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.||++... .|..+|+|++..... .....|..|+..++ .+||||+++|+|.++
T Consensus 13 GgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~l 92 (932)
T PRK13184 13 GGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSL 92 (932)
T ss_pred CCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHH
Confidence 568999999864 578999999864322 22345666666543 268999999999988
Q ss_pred cccC----------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSS----------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~----------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ....++....+++.++++||+||| ..+|+||||||+||+++.++.++++|||+|+..
T Consensus 93 L~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i 163 (932)
T PRK13184 93 LKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAIFK 163 (932)
T ss_pred HHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHH---HCCccccCCchheEEEcCCCCEEEEecCcceec
Confidence 7531 124677888999999999999999 668999999999999999999999999999876
|
|
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=158.20 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=91.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-----hhhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-----ERAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-----~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
+++|.+|++... .+..+++|.+.... .+....+..|+.+++ .+++||+++++
T Consensus 13 g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~ 92 (266)
T cd06651 13 GAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGS 92 (266)
T ss_pred CCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCc
Confidence 457889999764 57899999875432 112234555555532 25789999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.++++|||+++.+.
T Consensus 93 L~~~l~~~-~~l~~~~~~~~~~qi~~~l~~LH---~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~ 157 (266)
T cd06651 93 VKDQLKAY-GALTESVTRKYTRQILEGMSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ 157 (266)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCCCccccc
Confidence 99888643 34788889999999999999999 6679999999999999999999999999987553
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=162.22 Aligned_cols=114 Identities=20% Similarity=0.234 Sum_probs=90.7
Q ss_pred CcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
+++.||++.. .+|..+|+|.++... ......+..|+..++ .+|+||+++|+|.+++.
T Consensus 12 ~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~ 91 (327)
T cd08227 12 DLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLIC 91 (327)
T ss_pred ceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHH
Confidence 4677888875 568999999987643 222334555555533 26899999999999885
Q ss_pred cC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 465 SS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 465 ~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.++++|||.+.
T Consensus 92 ~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~ 149 (327)
T cd08227 92 THFMDGMSELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNL 149 (327)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCChhhEEEecCCcEEEcccchhh
Confidence 42 345899999999999999999999 6679999999999999999999999998643
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=164.77 Aligned_cols=118 Identities=25% Similarity=0.313 Sum_probs=94.0
Q ss_pred CCcCcceEEEecC--CceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD--GMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
+++|.||++.... +..+|+|.+..... .....+..|..+++ .+|+||+++|+|.+
T Consensus 41 G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~ 120 (340)
T PTZ00426 41 GSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFT 120 (340)
T ss_pred cCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 4588999997543 36899998865432 22334555555533 36899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+|++|||+++....
T Consensus 121 ~i~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~ 183 (340)
T PTZ00426 121 FLRRN-KRFPNDVGCFYAAQIVLIFEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT 183 (340)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC
Confidence 88643 35888889999999999999999 67899999999999999999999999999987643
|
|
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=165.91 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=94.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 29 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 108 (329)
T PTZ00263 29 GSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTH 108 (329)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHH
Confidence 458899999875 578999999865432 22334555655533 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++....
T Consensus 109 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~ 170 (329)
T PTZ00263 109 LRKA-GRFPNDVAKFYHAELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD 170 (329)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEECCCCCEEEeeccCceEcCC
Confidence 8653 35778888889999999999999 67899999999999999999999999999987644
|
|
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=156.71 Aligned_cols=196 Identities=26% Similarity=0.337 Sum_probs=132.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.+++.+|++... ++..+++|.+...... ....+..|+..++ .+|+||+++++|.+++
T Consensus 11 G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~ 90 (264)
T cd06626 11 GTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELL 90 (264)
T ss_pred CCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHH
Confidence 357889998764 6789999998765442 4456666666533 2689999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---------- 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---------- 533 (639)
... ..+++..+..++.++++|++||| +.+|+|+|||+.||+++.++.+||+|||++..........
T Consensus 91 ~~~-~~~~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T cd06626 91 EHG-RILDEHVIRVYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGT 166 (264)
T ss_pred hhc-CCCChHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCC
Confidence 753 34789999999999999999999 6779999999999999999999999999987654322110
Q ss_pred -----cc----c---ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 -----TQ----N---TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 -----~~----~---~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+. . ..+.++||| | +|+.|....- ........+.. . ..+.+..
T Consensus 167 ~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~-~~~~~~~~~~~---~-----~~~~~~~-------- 229 (264)
T cd06626 167 PAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD-NEFQIMFHVGA---G-----HKPPIPD-------- 229 (264)
T ss_pred cCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc-chHHHHHHHhc---C-----CCCCCCc--------
Confidence 00 0 123366777 5 6766654211 11111111100 0 0000000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++..|++.+|++||++.|++.
T Consensus 230 ~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 230 SLQLSPEGKDFLDRCLESDPKKRPTASELLQ 260 (264)
T ss_pred ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 0112334567888999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=157.33 Aligned_cols=117 Identities=34% Similarity=0.497 Sum_probs=93.6
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++.... |..+++|.+..... .....+..+.+.++ .+++||+++++|.++
T Consensus 4 g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 83 (265)
T cd05579 4 GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASL 83 (265)
T ss_pred CCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHH
Confidence 3578899998764 88999999865432 22334444443322 368999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.... .+++..+.+++.++++||+||| ..+++||||+|+||+++.++.++++|||++....
T Consensus 84 l~~~~-~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~ 144 (265)
T cd05579 84 LENVG-SLDEDVARIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGL 144 (265)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCCCHHHeEEcCCCCEEEEecccchhcc
Confidence 87533 6899999999999999999999 6789999999999999999999999999987543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=161.88 Aligned_cols=116 Identities=29% Similarity=0.316 Sum_probs=88.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHH-H--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDM-M--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+|+|++..... .....+..+... + ..+|+||+++|+|.+
T Consensus 6 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (325)
T cd05602 6 GSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFY 85 (325)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHH
Confidence 468899999865 567899999864321 111222222211 1 136899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+.......++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 ~~~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~ 146 (325)
T cd05602 86 HLQRE-RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKEN 146 (325)
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEEccCCCCccc
Confidence 88653 34667777789999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=156.97 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=137.0
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+++.+|++.... +..+++|.+..... .....+..++.... .+|+||+++++|.+++.
T Consensus 12 g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 91 (264)
T cd06623 12 GSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLK 91 (264)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHH
Confidence 4678899998764 88999999876543 23445666665532 36899999999999986
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCC-CCeEeecCCCCceeecCCcceeeccccccccccccCCCc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYS-TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~-~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---------- 533 (639)
.. ..+++..+.+++.++++|++|+| . .+++||||+++||+++.++.++++|||+++.........
T Consensus 92 ~~-~~l~~~~~~~~~~~l~~~l~~lh---~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~ 167 (264)
T cd06623 92 KV-GKIPEPVLAYIARQILKGLDYLH---TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYM 167 (264)
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHh---ccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeeccccc
Confidence 53 45899999999999999999999 6 789999999999999999999999999988764332210
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccCC-CccchHHHHHhhCCCCcceeeeccccccccccccchHH-HH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFFS-GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ-CL 597 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~ 597 (639)
+. ...+.++|+| | ||+.|...... .-..+..++. ... .+.+ ... ..
T Consensus 168 ~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~---~~~-----~~~~----------~~~~~~ 229 (264)
T cd06623 168 SPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAIC---DGP-----PPSL----------PAEEFS 229 (264)
T ss_pred CHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHh---cCC-----CCCC----------CcccCC
Confidence 00 1122367888 6 77777653221 1111222211 110 0000 011 33
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.+++..|++.+|++||++.|+++.
T Consensus 230 ~~l~~li~~~l~~~p~~R~~~~~ll~~ 256 (264)
T cd06623 230 PEFRDFISACLQKDPKKRPSAAELLQH 256 (264)
T ss_pred HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 467778889999999999999999874
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=164.24 Aligned_cols=116 Identities=29% Similarity=0.389 Sum_probs=90.7
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhh----hhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYE----RAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~----~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|+|.+..... .....+..|...++ .+|+||+++|+
T Consensus 7 G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~ 86 (323)
T cd05584 7 GGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGE 86 (323)
T ss_pred cCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCch
Confidence 468899988753 568899999864321 12233444554432 36899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
|.+++... ..+.+.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 87 L~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 150 (323)
T cd05584 87 LFMHLERE-GIFMEDTACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKES 150 (323)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEeeCcCCeec
Confidence 99888643 34677778889999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=163.79 Aligned_cols=115 Identities=27% Similarity=0.403 Sum_probs=90.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .|..+|+|.+..... .....+..+...+ ..+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~ 85 (316)
T cd05620 6 GSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMF 85 (316)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHH
Confidence 468899999875 578999999875431 1112222333221 137899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++... ..+++.+...++.++++||+||| ..+|+||||||+||+++.++.++|+|||+++.
T Consensus 86 ~i~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~ 145 (316)
T cd05620 86 HIQDK-GRFDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKE 145 (316)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEeCccCCCee
Confidence 87643 35788888999999999999999 67899999999999999999999999999874
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=158.84 Aligned_cols=119 Identities=29% Similarity=0.440 Sum_probs=93.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... .+..+|+|.+..... .....+..+++.++ .+|+||+++++|..++.
T Consensus 12 g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~ 91 (286)
T cd06622 12 GNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYA 91 (286)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHH
Confidence 467899998875 678999998764321 12234545554432 26899999999988876
Q ss_pred cC--CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 465 SS--NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~--~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.. ...+++.....++.+++.|+.|||+ ..+|+||||||+||+++.++.++++|||+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 154 (286)
T cd06622 92 GGVATEGIPEDVLRRITYAVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLV 154 (286)
T ss_pred hccccCCCCHHHHHHHHHHHHHHHHHHHh--cCCEeeCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 53 2368999999999999999999995 3479999999999999999999999999987653
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=162.90 Aligned_cols=115 Identities=24% Similarity=0.325 Sum_probs=91.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+..... .....+..|..+++ .+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~ 85 (329)
T cd05588 6 GSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMF 85 (329)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHH
Confidence 457899998864 578999999875422 12233444444321 37899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++... ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.
T Consensus 86 ~~~~~-~~l~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~ 145 (329)
T cd05588 86 HMQRQ-RKLPEEHARFYSAEISLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE 145 (329)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEECCCCCEEECcCccccc
Confidence 87543 45899999999999999999999 67899999999999999999999999999874
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=159.66 Aligned_cols=208 Identities=22% Similarity=0.254 Sum_probs=132.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+++|.+...... ..+.+..|++.++ .+|+||++++++..+.
T Consensus 12 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 91 (286)
T cd07846 12 GSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLE 91 (286)
T ss_pred CCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHH
Confidence 467889999875 4789999987543221 2234445554422 3689999998888766
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...++|.+...++.++++|++||| ..+++||||+|+||++++++.++++|||+++.+......
T Consensus 92 ~~-~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~ 167 (286)
T cd07846 92 KY-PNGLDESRVRKYLFQILRGIEFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYR 167 (286)
T ss_pred hc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeecc
Confidence 53 234899999999999999999999 567999999999999999999999999998765432110
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHh-----hCCCCcceee----------ecccc
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND-----LLPISVMEVV----------DVNLL 583 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~-----~~~~~~~~~~----------d~~l~ 583 (639)
.+. ...+.++||| | ||+.|.... ..+..+... .+.....+.. .+...
T Consensus 168 aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (286)
T cd07846 168 APELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD----SDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVK 243 (286)
T ss_pred CcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCC----chHHHHHHHHHHhCCCchhhHHHhccchHhhcccccccc
Confidence 000 1122368898 7 787665421 111111110 0000000111 11100
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... ......+.....+.+++.+|++.+|++||+|.+|++
T Consensus 244 ~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 282 (286)
T cd07846 244 EIE-PLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH 282 (286)
T ss_pred Ccc-hHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence 000 000001123456888999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=156.89 Aligned_cols=118 Identities=33% Similarity=0.450 Sum_probs=96.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++... .+..+++|.+........+.+..++..++ .+++||+++++|.+++..
T Consensus 14 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~ 93 (262)
T cd06613 14 GTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQV 93 (262)
T ss_pred CCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHh
Confidence 457889998764 46789999987655444556666666533 267999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
....++..+...++.+++.|++||| ..+++||||||+||++++++.++++|||++....
T Consensus 94 ~~~~l~~~~~~~~~~ql~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~ 152 (262)
T cd06613 94 TRGPLSELQIAYVCRETLKGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLT 152 (262)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH---hCCceecCCChhhEEECCCCCEEECccccchhhh
Confidence 5456899999999999999999999 6689999999999999999999999999987654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=157.27 Aligned_cols=194 Identities=20% Similarity=0.248 Sum_probs=130.4
Q ss_pred CcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
++|.+|.+.. .++..+++|.++... ......+..|++.++. +++||+++|+|.+++.
T Consensus 12 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~ 91 (256)
T cd08221 12 AFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIV 91 (256)
T ss_pred CCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHH
Confidence 4566666654 457889999876543 2334456666666432 5799999999999887
Q ss_pred cC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----------
Q 041082 465 SS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---------- 533 (639)
Q Consensus 465 ~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---------- 533 (639)
.. ...+++.++..++.++++|++||| ..+++||||||+||++++++.+|++|||+++.........
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ 168 (256)
T cd08221 92 RQKGQLFEEEMVLWYLFQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYM 168 (256)
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCcccc
Confidence 53 346899999999999999999999 5679999999999999999999999999998664332110
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.++||| | +|+.|... ....+.+.......... ........
T Consensus 169 ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 228 (256)
T cd08221 169 SPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA-----TNPLNLVVKIVQGNYTP---------------VVSVYSSE 228 (256)
T ss_pred CHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCCCC---------------CccccCHH
Confidence 00 0112246666 4 55555432 11112221111111000 01122345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++..|++.+|++||++.++++.
T Consensus 229 ~~~~i~~~l~~~p~~R~s~~~ll~~ 253 (256)
T cd08221 229 LISLVHSLLQQDPEKRPTADEVLDQ 253 (256)
T ss_pred HHHHHHHHcccCcccCCCHHHHhhC
Confidence 7778889999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=157.21 Aligned_cols=117 Identities=31% Similarity=0.405 Sum_probs=94.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. ..+..+++|.+..........+..++..++ .+|+||+++|+|.+++..
T Consensus 20 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 99 (267)
T cd06645 20 GTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHV 99 (267)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHh
Confidence 46788999875 457899999987654433344555554432 268999999999998764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
. ..+++.+...++.+++.|+.||| ..+++|+||||+||+++.++.++++|||++....
T Consensus 100 ~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~ 157 (267)
T cd06645 100 T-GPLSESQIAYVSRETLQGLYYLH---SKGKMHRDIKGANILLTDNGHVKLADFGVSAQIT 157 (267)
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEECcceeeeEcc
Confidence 3 35889999999999999999999 5689999999999999999999999999987553
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-16 Score=162.19 Aligned_cols=117 Identities=33% Similarity=0.421 Sum_probs=90.4
Q ss_pred cCcceEEEe-cCCceeeeEEechhhhhhh---hhHHHHHHHHH---------------------hhhhhcCCCCCchhcc
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYERAF---KSFDVACDMMK---------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~~~~---~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l 463 (639)
+..|++++- ..+..+|||+++-.+.-.. +-...|...+. ++|.||.++|+|.+++
T Consensus 86 YStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i 165 (604)
T KOG0592|consen 86 YSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLI 165 (604)
T ss_pred ceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHH
Confidence 456777764 4678999999986653221 12223333322 3588999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
++- ..++.....-+|.+|..|++||| +.+||||||||.|||||+||+.+|+|||-|+.+.+.
T Consensus 166 ~K~-Gsfde~caR~YAAeIldAleylH---~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~ 227 (604)
T KOG0592|consen 166 KKY-GSFDETCARFYAAEILDALEYLH---SNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPS 227 (604)
T ss_pred HHh-CcchHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeEcCCCcEEEeeccccccCChh
Confidence 863 24666655678999999999999 889999999999999999999999999999998754
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=156.23 Aligned_cols=196 Identities=26% Similarity=0.367 Sum_probs=135.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
+++|.+|++... ++..+++|++..........+..++..++ .+++||+++++|.+++..
T Consensus 11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~ 90 (253)
T cd05122 11 GGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKS 90 (253)
T ss_pred CCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhh
Confidence 457899999875 67889999987665444456666766533 267899999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC--CC--c------c-
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED--QS--F------T- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~--~~--~------~- 534 (639)
....+++..+..++.+++.|++||| ..+++||||+|+||++++++.++|+|||++....... .. . +
T Consensus 91 ~~~~~~~~~~~~i~~~i~~~l~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE 167 (253)
T cd05122 91 TNQTLTESQIAYVCKELLKGLEYLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPE 167 (253)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhh---cCCEecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHH
Confidence 5456899999999999999999999 5789999999999999999999999999988765432 00 0 0
Q ss_pred ---ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.+.||| | +|+.|....- ..+...........+..+ .......+.+
T Consensus 168 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 229 (253)
T cd05122 168 VINGKPYDYKADIWSLGITAIELAEGKPPYSELP-----PMKALFKIATNGPPGLRN-------------PEKWSDEFKD 229 (253)
T ss_pred HHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc-----hHHHHHHHHhcCCCCcCc-------------ccccCHHHHH
Confidence 01123367777 5 6666654210 011110000000000000 0111345777
Q ss_pred HHhhccCCCCCCCCCHHHHHH
Q 041082 603 LAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++.+|++.+|++||++.|+++
T Consensus 230 ~i~~~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 230 FLKKCLQKNPEKRPTAEQLLK 250 (253)
T ss_pred HHHHHccCChhhCCCHHHHhc
Confidence 888999999999999999875
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=164.28 Aligned_cols=115 Identities=26% Similarity=0.334 Sum_probs=90.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|...+. .+||||+++|+|.+
T Consensus 11 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~ 90 (324)
T cd05587 11 GSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 90 (324)
T ss_pred ccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHH
Confidence 468899999865 467899999865421 12223333433321 26899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++.
T Consensus 91 ~~~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~ 150 (324)
T cd05587 91 HIQQV-GKFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKE 150 (324)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHeEEcCCCCEEEeecCccee
Confidence 87643 35789999999999999999999 67899999999999999999999999999874
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=159.65 Aligned_cols=212 Identities=21% Similarity=0.267 Sum_probs=136.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++... +|..+++|.+.... ......+..++...+ .+|+||+ +++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~ 89 (286)
T cd07832 11 GAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVL 89 (286)
T ss_pred CCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHH
Confidence 457889999864 67899999986543 222345555555432 3789999 99999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC---C--------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ---S-------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~---~-------- 532 (639)
......+++.++.+++.++++||+||| ..+++|+|||++||+++.++.++++|||+++....... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y 166 (286)
T cd07832 90 RDEERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWY 166 (286)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccc
Confidence 765566899999999999999999999 66899999999999999999999999999887644321 0
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC-------cceeeeccccccccccc
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS-------VMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~ 590 (639)
.+. ...+.++||| | ||+.+.... .......++...+... ..+.-+..-........
T Consensus 167 ~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (286)
T cd07832 167 RAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE--NDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKP 244 (286)
T ss_pred cCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCC--CHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCc
Confidence 000 0113478998 6 786554321 1111111221111100 00000000000000000
Q ss_pred ----cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 591 ----TTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 591 ----~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
...++....+.++..+|+..+|++||++.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h 282 (286)
T cd07832 245 IPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH 282 (286)
T ss_pred chHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 0001223677889999999999999999999863
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=157.72 Aligned_cols=116 Identities=28% Similarity=0.435 Sum_probs=90.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+++|.+..... .....+..|+..++ .+|+||++ |++.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~ 89 (285)
T cd07861 11 GTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYL 89 (285)
T ss_pred cCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHH
Confidence 457889999864 678999998865432 12234455555532 36889997 6887777
Q ss_pred cc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 464 YS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 464 ~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.. ....+++.....++.+++.||+||| ..+++||||||+||+++.++.++|+|||+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 151 (285)
T cd07861 90 DSLPKGQYMDAELVKSYLYQILQGILFCH---SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAF 151 (285)
T ss_pred hcCCCCCcCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence 54 2246899999999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=157.76 Aligned_cols=194 Identities=23% Similarity=0.378 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH-----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK-----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++.. .++..+++|.++.... .....+..++..++ .+|+||+++++|.+
T Consensus 12 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~ 91 (277)
T cd06917 12 GAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRT 91 (277)
T ss_pred cCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHH
Confidence 46789999986 5678999998864321 22234444443321 26899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------- 533 (639)
++... .++|.....++.+++.|++||| ..+++||||+|+||+++.++.++++|||++..........
T Consensus 92 ~~~~~--~l~~~~~~~i~~~i~~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~ 166 (277)
T cd06917 92 LMKAG--PIAEKYISVIIREVLVALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPY 166 (277)
T ss_pred HHHcc--CCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcc
Confidence 87543 6899999999999999999999 6789999999999999999999999999987664432110
Q ss_pred ---cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 ---TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 ---~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+. ...+.++|+| | +|+.|.... ....+.... .. ...+.+.. ...
T Consensus 167 y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~-----~~~~~~~~~-~~----~~~~~~~~---------~~~ 227 (277)
T cd06917 167 WMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDV-----DAFRAMMLI-PK----SKPPRLED---------NGY 227 (277)
T ss_pred eeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCC-----Chhhhhhcc-cc----CCCCCCCc---------ccC
Confidence 00 0112356666 5 566655321 111111100 00 00011110 013
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
...+.+++.+|++.+|++||++.|++..
T Consensus 228 ~~~~~~~i~~~l~~~p~~R~~~~~il~~ 255 (277)
T cd06917 228 SKLLREFVAACLDEEPKERLSAEELLKS 255 (277)
T ss_pred CHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence 3467788999999999999999999863
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=159.28 Aligned_cols=196 Identities=26% Similarity=0.325 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++... ++..+++|++..... ....+..|++.++ .+++||+++++|.+++..
T Consensus 30 g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 108 (286)
T cd06614 30 GASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQ 108 (286)
T ss_pred CCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHH
Confidence 357889998876 678899999876543 3345555655532 368899999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
....+++..+..++.+++.||+||| ..+++|+||||+||+++.++.++|+|||++.......... +
T Consensus 109 ~~~~l~~~~~~~i~~~i~~~L~~lH---~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~P 185 (286)
T cd06614 109 NFVRMNEPQIAYVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAP 185 (286)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCH
Confidence 4446999999999999999999999 6789999999999999999999999999887554321100 0
Q ss_pred c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
. ...+.++|+| | ||+.|.... ........+.. ...... .........+.
T Consensus 186 E~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~-~~~~~~~~~~~----~~~~~~-------------~~~~~~~~~l~ 247 (286)
T cd06614 186 EVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE-PPLRALFLITT----KGIPPL-------------KNPEKWSPEFK 247 (286)
T ss_pred hHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHh----cCCCCC-------------cchhhCCHHHH
Confidence 0 0112356666 5 565554321 00000000000 000000 01112334577
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+++.+|++.+|.+||++.+|++.
T Consensus 248 ~li~~~l~~~p~~Rpt~~~il~~ 270 (286)
T cd06614 248 DFLNKCLVKDPEKRPSAEELLQH 270 (286)
T ss_pred HHHHHHhccChhhCcCHHHHhhC
Confidence 88999999999999999999863
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-16 Score=165.64 Aligned_cols=190 Identities=24% Similarity=0.289 Sum_probs=130.6
Q ss_pred CcceEEE-ecCCceeeeEEechhhh---hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 410 GSIYKAR-IQDGMKVAVKVFDLQYE---RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 410 g~vy~~~-l~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
|.|..|+ ...|+.+|||.+....+ .....+..|+-+|+. ||.||+++|-|++++..
T Consensus 26 g~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~ 105 (786)
T KOG0588|consen 26 GCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVR 105 (786)
T ss_pred ceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHh
Confidence 3444444 24689999999865521 123456667777664 67899999999998875
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----ccc----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----TQN---- 536 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----~~~---- 536 (639)
.+ .+......++..||..|+.|.| ...|+|||+||.|+|||...+.||+|||+|.+-.++..-. ++.
T Consensus 106 kG-~l~e~eaa~ff~QIi~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PE 181 (786)
T KOG0588|consen 106 KG-PLPEREAAHFFRQILDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPE 181 (786)
T ss_pred hC-CCCCHHHHHHHHHHHHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccCCccccccCCCcccCCch
Confidence 43 4666667889999999999999 7889999999999999999999999999998765543210 111
Q ss_pred ------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 537 ------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 537 ------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....++||| | ||+-|++| .++..... .+..+..++ +.+...++-
T Consensus 182 IV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD-----dNir~LLl-KV~~G~f~M---------------Ps~Is~eaQ 240 (786)
T KOG0588|consen 182 IVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD-----DNIRVLLL-KVQRGVFEM---------------PSNISSEAQ 240 (786)
T ss_pred hhcCCCCCCCccccchhHHHHHHHHhCCCCCCC-----ccHHHHHH-HHHcCcccC---------------CCcCCHHHH
Confidence 111278888 6 88888874 22322211 111111111 222233455
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+|..+.+..||+.|-||.||.++
T Consensus 241 dLLr~ml~VDp~~RiT~~eI~kH 263 (786)
T KOG0588|consen 241 DLLRRMLDVDPSTRITTEEILKH 263 (786)
T ss_pred HHHHHHhccCccccccHHHHhhC
Confidence 67778889999999999999875
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-18 Score=151.37 Aligned_cols=159 Identities=30% Similarity=0.499 Sum_probs=121.4
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
.++.|.|+.|.++ .+|+.++.|.+|+.|++++|++. .+|.+++.+++|+.|++.-|++. ..|..|+.++.|+.|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 5777888888887 46777888888888888888887 67888888888888888888875 578888888888888888
Q ss_pred cccCcc-ccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 133 NNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 133 ~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
+|++.. ..|+.|+.++.|+.|+|+.|.+. .+|..++++++|+.|.+.+|.+.. .|..++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-------------------~lp~dvg~lt~lqil~lrdndll~-lpkeig 170 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-------------------ILPPDVGKLTNLQILSLRDNDLLS-LPKEIG 170 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-------------------cCChhhhhhcceeEEeeccCchhh-CcHHHH
Confidence 888753 56777777777777777776665 456677777777777777777654 366677
Q ss_pred CCCCCCEEEccCCCCCCCCCcch
Q 041082 212 NLINLKRLNLYDNYLTSSTPELS 234 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~ 234 (639)
.++.|+.|.+.+|.++-.+|++.
T Consensus 171 ~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHHhcccceeeecChhhh
Confidence 77788888888887777666543
|
|
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=158.47 Aligned_cols=201 Identities=23% Similarity=0.270 Sum_probs=129.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. .++..+++|.++.........+..++..++ .+|+||+++|+|.+++..
T Consensus 30 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 109 (293)
T cd06647 30 GASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 109 (293)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhh
Confidence 45789999874 467889999986554433444555554422 368899999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
..+++..+..++.++++|++||| ..+++|||||++||+++.++.++|+|||++............
T Consensus 110 --~~l~~~~~~~i~~~l~~al~~LH---~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~P 184 (293)
T cd06647 110 --TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184 (293)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---hCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCc
Confidence 34789999999999999999999 678999999999999999999999999988755432211000
Q ss_pred -----cccccccccccCCCCCCCccCCCccchHHHHHhhCCCCcc---eeeeccccccccccccchHHHHHHHHHHHhhc
Q 041082 536 -----NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVM---EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607 (639)
Q Consensus 536 -----~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C 607 (639)
...+.++|+| +.|..+++......|.... +.+....... .............+.+++.+|
T Consensus 185 E~~~~~~~~~~~Dv~-----------slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~ 252 (293)
T cd06647 185 EVVTRKAYGPKVDIW-----------SLGIMAIEMVEGEPPYLNENPLRALYLIATNG-TPELQNPEKLSAIFRDFLNRC 252 (293)
T ss_pred hhhccCCCCchhhHH-----------HHHHHHHHHHhCCCCCCCCChhhheeehhcCC-CCCCCCccccCHHHHHHHHHH
Confidence 0012245555 3333333333222221100 0000000000 000001111233567788999
Q ss_pred cCCCCCCCCCHHHHHHH
Q 041082 608 TAESPKQRINAKESVTR 624 (639)
Q Consensus 608 ~~~~p~~RP~m~~v~~~ 624 (639)
++.+|++||++.+++.+
T Consensus 253 l~~~p~~Rp~~~~il~h 269 (293)
T cd06647 253 LEMDVEKRGSAKELLQH 269 (293)
T ss_pred ccCChhhCcCHHHHhcC
Confidence 99999999999999864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=158.56 Aligned_cols=116 Identities=27% Similarity=0.441 Sum_probs=93.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh------hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE------RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~------~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++....+..+|+|.+..... .....+..|++.++ .+++||+++|+|.
T Consensus 11 g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~ 90 (265)
T cd06631 11 GAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSIS 90 (265)
T ss_pred cCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHH
Confidence 457889999888888999998764321 12234555555532 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+++... ..+++.....++.+++.|++||| ..+++|+||||+||+++.++.++++|||+++..
T Consensus 91 ~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 152 (265)
T cd06631 91 SILNRF-GPLPEPVFCKYTKQILDGVAYLH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152 (265)
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence 988643 35788888999999999999999 667999999999999999999999999998765
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=156.44 Aligned_cols=194 Identities=23% Similarity=0.381 Sum_probs=129.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++.. ..+..+++|.++.... .....+..|+..++ .+|+||+++++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~ 90 (256)
T cd08220 11 GAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYI 90 (256)
T ss_pred cCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHH
Confidence 45778898775 3578899998865421 22344555555532 3689999999999998
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCc--------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~-------- 533 (639)
... ...+++..+.+++.++++|++||| ..+++||||||+||+++. +..+|++|||+++.........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y 167 (256)
T cd08220 91 QKRCNSLLDEDTILHFFVQILLALHHVH---TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCY 167 (256)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcc
Confidence 753 345899999999999999999999 668999999999999985 4568999999998665332110
Q ss_pred --cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | +|+.|... .+....+.......... .+.....
T Consensus 168 ~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~~ 227 (256)
T cd08220 168 ISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEA-----ANLPALVLKIMSGTFAP---------------ISDRYSP 227 (256)
T ss_pred cCchhccCCCCCcccchHHHHHHHHHHHhCCCCccc-----CchHHHHHHHHhcCCCC---------------CCCCcCH
Confidence 00 1123357777 5 56655432 11222221111110000 0111233
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++||||.|+++
T Consensus 228 ~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 228 DLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred HHHHHHHHHccCChhhCCCHHHHhh
Confidence 5678889999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=158.03 Aligned_cols=212 Identities=24% Similarity=0.250 Sum_probs=130.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .|..+++|.+...... ....+..|+..++ .+++||++ +++.+++
T Consensus 11 g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~ 89 (284)
T cd07839 11 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYF 89 (284)
T ss_pred cCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHH
Confidence 457889998864 6889999988653221 1233444554432 26789997 5787777
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
......+++.....++.++++||+||| ..+++||||||+||+++.++.++++|||+++........
T Consensus 90 ~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~ 166 (284)
T cd07839 90 DSCNGDIDPEIVKSFMFQLLKGLAFCH---SHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYR 166 (284)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCc
Confidence 654456899999999999999999999 678999999999999999999999999999865422110
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC-C------cceeeecccccccccc--
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI-S------VMEVVDVNLLSMEDKY-- 589 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~-~------~~~~~d~~l~~~~~~~-- 589 (639)
.+. ...+.++||| | ||+.|..........+ +........ . ..+..+..........
T Consensus 167 aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (284)
T cd07839 167 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL-KRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTS 245 (284)
T ss_pred ChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHH-HHHHHHhCCCChHHhHHhhhcccccccCCCCCcch
Confidence 011 1123478999 7 7887753211111000 001000000 0 0001110000000000
Q ss_pred -ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 -FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 -~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+........+.++..+|++.+|++|||+.|++.
T Consensus 246 ~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~ 280 (284)
T cd07839 246 LVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ 280 (284)
T ss_pred hhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence 0000112345678899999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=162.31 Aligned_cols=116 Identities=26% Similarity=0.314 Sum_probs=90.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+...... ....+..+...+ ..+|+||+++|+|.+
T Consensus 11 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~ 90 (323)
T cd05616 11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 90 (323)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHH
Confidence 468899999865 4679999998654221 111222222221 127899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.+... ..+++.++..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~ 151 (323)
T cd05616 91 QIQQV-GRFKEPHAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 151 (323)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEecCCCHHHeEECCCCcEEEccCCCceec
Confidence 87643 35889999999999999999999 678999999999999999999999999999754
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=159.85 Aligned_cols=195 Identities=23% Similarity=0.335 Sum_probs=129.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++... ++..+++|.+..... .....+..|++.++ .+|+||++ |++.+.
T Consensus 36 G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-g~l~~~ 114 (317)
T cd06635 36 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL-GSASDL 114 (317)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-CCHHHH
Confidence 457889998864 678999998864322 22234555555432 37899997 577777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------ccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FTQ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~~ 535 (639)
+......++|.++..++.+++.|+.||| ..+|+||||+|+||+++.++.++++|||++......... .+.
T Consensus 115 ~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE 191 (317)
T cd06635 115 LEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPE 191 (317)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChh
Confidence 6554556899999999999999999999 668999999999999999999999999998765432211 000
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | +|+.|..+. .....+..+.....+. .........
T Consensus 192 ~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~-~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 252 (317)
T cd06635 192 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-NAMSALYHIAQNESPT------------------LQSNEWSDY 252 (317)
T ss_pred hhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHhccCCC------------------CCCccccHH
Confidence 1122367777 5 666665321 0001111111100000 001122335
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|++||++.+|++.
T Consensus 253 l~~li~~~l~~~p~~Rpt~~~il~~ 277 (317)
T cd06635 253 FRNFVDSCLQKIPQDRPTSEELLKH 277 (317)
T ss_pred HHHHHHHHccCCcccCcCHHHHHhC
Confidence 6778889999999999999999975
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=159.47 Aligned_cols=196 Identities=19% Similarity=0.217 Sum_probs=125.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHH---H--------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDM---M--------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~---~--------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+...... ....+..+..+ . ..+|+||+++|+|
T Consensus 5 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L 84 (279)
T cd05633 5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDL 84 (279)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCH
Confidence 458899998864 5789999987543211 11111122111 1 1368999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.+++... ..++|.....++.+++.|++||| ..+|+||||||+||+++.++.++++|||+++........
T Consensus 85 ~~~i~~~-~~l~~~~~~~i~~qi~~al~~lH---~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 160 (279)
T cd05633 85 HYHLSQH-GVFSEKEMRFYATEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG 160 (279)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcC
Confidence 8887643 35899999999999999999999 667999999999999999999999999998754321110
Q ss_pred --ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 --FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 --~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+. ...+.++|+| | ||+.|....... .. ..+...... .++. .++..
T Consensus 161 y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~-~~~~~~~~~-----~~~~----------~~~~~ 222 (279)
T cd05633 161 YMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DK-HEIDRMTLT-----VNVE----------LPDSF 222 (279)
T ss_pred ccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc--CH-HHHHHHhhc-----CCcC----------Ccccc
Confidence 000 0112356777 5 666665432111 11 111110000 0000 01122
Q ss_pred HHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRI-----NAKESVTR 624 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP-----~m~~v~~~ 624 (639)
...+.++...|+..+|++|| +++|++++
T Consensus 223 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h 255 (279)
T cd05633 223 SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH 255 (279)
T ss_pred CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence 34566778899999999999 58888764
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=161.70 Aligned_cols=116 Identities=28% Similarity=0.309 Sum_probs=91.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 54 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~ 133 (370)
T cd05596 54 GAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNL 133 (370)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHH
Confidence 468899998764 578999999864321 12233445555532 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... .++......++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++...
T Consensus 134 l~~~--~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~ 193 (370)
T cd05596 134 MSNY--DIPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMD 193 (370)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEcCCCCEEEEeccceeecc
Confidence 8643 3666667889999999999999 6789999999999999999999999999997654
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-16 Score=161.16 Aligned_cols=195 Identities=23% Similarity=0.294 Sum_probs=130.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. .++..+++|.++.........+..|+..++ .+++||+++++|..++..
T Consensus 32 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~ 111 (297)
T cd06659 32 GSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ 111 (297)
T ss_pred CCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhh
Confidence 46788999875 468899999987544333344555554422 268899999999887753
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----------T 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----------~ 534 (639)
..+++..+..++.+++.|++||| ..+++|||||++||+++.++.++|+|||+++......... +
T Consensus 112 --~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aP 186 (297)
T cd06659 112 --TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP 186 (297)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCH
Confidence 35889999999999999999999 6679999999999999999999999999987554321110 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | +|+.|.... ........+.. .. .+... ........+.
T Consensus 187 E~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~--~~~~~~~~~~~---~~-----~~~~~--------~~~~~~~~l~ 248 (297)
T cd06659 187 EVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD--SPVQAMKRLRD---SP-----PPKLK--------NAHKISPVLR 248 (297)
T ss_pred HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhc---cC-----CCCcc--------ccCCCCHHHH
Confidence 01123367777 5 676665421 10011111110 00 00000 0011123466
Q ss_pred HHHhhccCCCCCCCCCHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+++.+|++.+|++||++.++++.
T Consensus 249 ~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 249 DFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred HHHHHHhcCCcccCcCHHHHhhC
Confidence 78889999999999999999984
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-16 Score=158.61 Aligned_cols=195 Identities=24% Similarity=0.333 Sum_probs=129.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.+|++... ++..+++|.+..... .....+..|+..++ .+|+||++ |++.+.
T Consensus 26 g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~ 104 (307)
T cd06607 26 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDI 104 (307)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHH
Confidence 457889999864 578999998754322 22344555655533 26889987 577666
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------ccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FTQ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~~ 535 (639)
+......+++..+..++.+++.||.||| ..+|+||||+|+||++++++.++++|||+++........ .+.
T Consensus 105 ~~~~~~~l~~~~~~~~~~ql~~~L~~LH---~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE 181 (307)
T cd06607 105 LEVHKKPLQEVEIAAICHGALQGLAYLH---SHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPE 181 (307)
T ss_pred HHHcccCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCce
Confidence 6544456899999999999999999999 667999999999999999999999999999765433211 000
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | ||+.|.... .-...+....... .+.+ ....+...
T Consensus 182 ~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~-----~~~~~~~~~~~~~-----~~~~---------~~~~~~~~ 242 (307)
T cd06607 182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQND-----SPTL---------SSNDWSDY 242 (307)
T ss_pred eeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc-----cHHHHHHHHhcCC-----CCCC---------CchhhCHH
Confidence 1122356776 5 666654321 1101110000000 0000 01223446
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.++..+|++.+|++||+|.+|+..
T Consensus 243 ~~~li~~~l~~~p~~Rp~~~~il~~ 267 (307)
T cd06607 243 FRNFVDSCLQKIPQDRPSSEELLKH 267 (307)
T ss_pred HHHHHHHHhcCChhhCcCHHHHhcC
Confidence 7888999999999999999999863
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-16 Score=156.94 Aligned_cols=118 Identities=31% Similarity=0.382 Sum_probs=88.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHH-H--------------------HhhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDM-M--------------------KKLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~~l 463 (639)
+++|.||++... +|..+|+|.+...... ....+..+... . ..+++||++ |+|.+.+
T Consensus 12 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l 90 (283)
T cd06617 12 GAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFY 90 (283)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHH
Confidence 568899998865 5899999988654321 11222223222 1 136889997 6777766
Q ss_pred cc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 464 YS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 464 ~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.. ....+++....+++.+++.|++|||.. .+++||||||+||+++.++.+||+|||+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~ 155 (283)
T cd06617 91 KKVYDKGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGYLV 155 (283)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecccccccc
Confidence 43 234689999999999999999999942 379999999999999999999999999998654
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-16 Score=159.81 Aligned_cols=118 Identities=25% Similarity=0.319 Sum_probs=93.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|.+..... .....+..|++.++. +++||+++|+|..+
T Consensus 11 G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 90 (285)
T cd05632 11 GGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFH 90 (285)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHH
Confidence 56899999876 4678999999865432 112234455555332 68999999999888
Q ss_pred ccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.. ....+++.....++.+++.||.||| ..+|+||||||+||++++++.++++|||+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~ 153 (285)
T cd05632 91 IYNMGNPGFEEERALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIP 153 (285)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCCHHHEEECCCCCEEEecCCcceecC
Confidence 764 2346899999999999999999999 6789999999999999999999999999987543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=163.89 Aligned_cols=116 Identities=29% Similarity=0.339 Sum_probs=90.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHH-H--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDM-M--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.. .+|..+|+|++..... .....+..+... + ..+|+||+++|+|..
T Consensus 6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (325)
T cd05604 6 GSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFF 85 (325)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHH
Confidence 46789999875 4688999999864421 112223333222 1 137899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++.. ...+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 86 ~l~~-~~~~~~~~~~~~~~qi~~al~~lH---~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~ 146 (325)
T cd05604 86 HLQR-ERSFPEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEG 146 (325)
T ss_pred HHHH-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence 7764 345888899999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-17 Score=152.14 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=140.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
..+|+||++-. ..|..+|+|.+.... ..+++..|+.+|. -+||||+.-||..+.++.
T Consensus 44 GSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~ 121 (502)
T KOG0574|consen 44 GSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRA 121 (502)
T ss_pred CcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHH
Confidence 34789998875 468999999986543 2334444444421 168999999999999988
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccccc------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT------ 539 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~------ 539 (639)
.++.|.......|..+..+||+||| -..-+|||||+-||||..++.||++|||.|..+.+.........++
T Consensus 122 R~K~L~E~EIs~iL~~TLKGL~YLH---~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAP 198 (502)
T KOG0574|consen 122 RRKPLSEQEISAVLRDTLKGLQYLH---DLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP 198 (502)
T ss_pred hcCCccHHHHHHHHHHHHhHHHHHH---HHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccH
Confidence 7888999988999999999999999 5567999999999999999999999999998886543221111111
Q ss_pred ---------cccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 540 ---------CHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 540 ---------~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
.++|+| | .|+.|+.+...- +..-++-.+-. .....+++....+-
T Consensus 199 EVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPM--------------RAIFMIPT~PP----PTF~KPE~WS~~F~ 260 (502)
T KOG0574|consen 199 EVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPM--------------RAIFMIPTKPP----PTFKKPEEWSSEFN 260 (502)
T ss_pred HHHHHhccchhhhHhhhcchhhhhhcCCCCccccccc--------------ceeEeccCCCC----CCCCChHhhhhHHH
Confidence 268888 6 677777654211 10111111111 12334567778888
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...+|+-..|++|-|+.+.++
T Consensus 261 DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 261 DFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred HHHHHHhcCCHHHHHHHHHHhh
Confidence 8999999999999999998875
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-16 Score=172.37 Aligned_cols=148 Identities=28% Similarity=0.471 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCc-----CccceecCCCC----CcEEEEEeCCCCCcccCCcCCCCCC
Q 041082 6 DNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVC-----HWTGVSCDVRS----YRVTTLNISGLSLTSTIPSELGNLS 76 (639)
Q Consensus 6 ~~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c-----~w~gv~c~~~~----~~v~~L~L~~~~l~~~~p~~l~~l~ 76 (639)
+...+..||+.+|..+. ++.. .+ |.. ++| .|.||.|+... ..|+.|+|++++++|.+|..++.++
T Consensus 369 t~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 369 TLLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cCchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 34568899999999873 5432 24 964 455 69999996321 2589999999999999999999999
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCC-CCCCEEec
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNL-SSLSDLDL 155 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L 155 (639)
+|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.+++|++|+.|+|++|+++|.+|..+..+ .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988753 34455555
Q ss_pred CCCC
Q 041082 156 SHNN 159 (639)
Q Consensus 156 s~N~ 159 (639)
.+|.
T Consensus 523 ~~N~ 526 (623)
T PLN03150 523 TDNA 526 (623)
T ss_pred cCCc
Confidence 5543
|
|
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=162.25 Aligned_cols=116 Identities=25% Similarity=0.317 Sum_probs=91.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
+++|.||++... +|..+|+|.+..... .....+..|...+ ..+|+||+++|+|.+
T Consensus 11 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~ 90 (323)
T cd05615 11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMY 90 (323)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcHHH
Confidence 468899998764 578999999864321 1122233333221 136899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.+...++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~i~~~-~~l~~~~~~~i~~qi~~al~~lH---~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~ 151 (323)
T cd05615 91 HIQQV-GKFKEPQAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEH 151 (323)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEecccccccc
Confidence 87642 35899999999999999999999 678999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-16 Score=152.76 Aligned_cols=206 Identities=25% Similarity=0.308 Sum_probs=129.1
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHH-------------------------HHhhhhhcCCCCCchh
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDM-------------------------MKKLVLEYMPHGSLEK 461 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~-------------------------~~~Lv~ey~~~gsL~~ 461 (639)
.||.||++.+.. +..+|||+.-..... +. .|.++ ...||+||||. +|+.
T Consensus 36 sFg~Vyq~~~~e~~~~vAIKKv~~d~r~--kn--rEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~ 110 (364)
T KOG0658|consen 36 SFGVVYQAKLRETEEEVAIKKVLQDKRY--KN--RELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYR 110 (364)
T ss_pred ccceEEEEEEcCCCceeEEEEecCCCCc--Cc--HHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHH
Confidence 489999999754 589999986433211 11 11222 23489999998 8888
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeeccccccccccccCCCcc---
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLLKEDQSFT--- 534 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~~~~~~~~--- 534 (639)
.++. .+..++.....-++.|+.+||+||| ..+|+||||||.|+|+|.+ +..||||||=|+.+..+....+
T Consensus 111 ~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh---~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYic 187 (364)
T KOG0658|consen 111 VIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH---SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYIC 187 (364)
T ss_pred HHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH---hcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEE
Confidence 7764 2234555445568899999999999 6899999999999999976 9999999999998876543211
Q ss_pred ------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC---------cceeeecccc
Q 041082 535 ------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS---------VMEVVDVNLL 583 (639)
Q Consensus 535 ------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~---------~~~~~d~~l~ 583 (639)
....+.+.||| | -|+.-... -+....|++.++.. .|.. -.+.-.|++.
T Consensus 188 SRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG-~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik 266 (364)
T KOG0658|consen 188 SRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPG-DSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIK 266 (364)
T ss_pred eccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCC-CCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccc
Confidence 11123378999 5 33321111 11122333333221 1211 1133334443
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...... .........+++..+++..+|++|.+..|+++
T Consensus 267 ~~~~~~~-~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~ 305 (364)
T KOG0658|consen 267 AHPWHKV-FFKRLPPDALDLLSKLLQYSPSKRLSALEALA 305 (364)
T ss_pred cccceee-cccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence 3221000 01223345778899999999999999999885
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-16 Score=152.43 Aligned_cols=116 Identities=32% Similarity=0.457 Sum_probs=88.5
Q ss_pred CcCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHHh---------------------------hhhhcCCCC
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMKK---------------------------LVLEYMPHG 457 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~~---------------------------Lv~ey~~~g 457 (639)
.+|.||+|.. ..|+.||+|++++.... .......|+.+++. +|+||+..
T Consensus 23 tyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~- 101 (323)
T KOG0594|consen 23 TYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR- 101 (323)
T ss_pred CceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeecc-
Confidence 4789999985 56899999999887652 22222344433221 46677754
Q ss_pred CchhccccCC---ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 458 SLEKCLYSSN---YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 458 sL~~~l~~~~---~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+|.+++.... ..++-.....+..|+.+|++|+| +.+|+||||||.|||+++++..|++|||+|+...
T Consensus 102 DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 102 DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLH---SHGILHRDLKPQNLLISSSGVLKLADFGLARAFS 171 (323)
T ss_pred cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCcceEEECCCCcEeeeccchHHHhc
Confidence 6666665422 34666678889999999999999 7889999999999999999999999999999665
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=148.75 Aligned_cols=162 Identities=29% Similarity=0.401 Sum_probs=110.5
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.+|+|.|+.|.|.++|.+ ...++.....+|..++..|++||| ...||||||||.|||+|+++++||+|||+|..+.
T Consensus 99 FlVFdl~prGELFDyLts-~VtlSEK~tR~iMrqlfegVeylH---a~~IVHRDLKpENILlddn~~i~isDFGFa~~l~ 174 (411)
T KOG0599|consen 99 FLVFDLMPRGELFDYLTS-KVTLSEKETRRIMRQLFEGVEYLH---ARNIVHRDLKPENILLDDNMNIKISDFGFACQLE 174 (411)
T ss_pred hhhhhhcccchHHHHhhh-heeecHHHHHHHHHHHHHHHHHHH---HhhhhhcccChhheeeccccceEEeccceeeccC
Confidence 489999999999999975 345777777889999999999999 8889999999999999999999999999999887
Q ss_pred ccCCC----ccc-c--ccccccccc-cCCCCCCCccCCCccchHHHHHhhC---------CCC------cceeeeccccc
Q 041082 528 KEDQS----FTQ-N--TNTCHHRIY-GTRRNPQMNFFSGEMTLKSWVNDLL---------PIS------VMEVVDVNLLS 584 (639)
Q Consensus 528 ~~~~~----~~~-~--~~~~~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~---------~~~------~~~~~d~~l~~ 584 (639)
++..- ++. . .-+.++..| + .| .|+.+++ .|+-..+ |.- +..++ ..+
T Consensus 175 ~GekLrelCGTPgYLAPEtikC~m~e~---~p---GYs~EVD--~Wa~GVImyTLLaGcpPFwHRkQmlMLR~I---meG 243 (411)
T KOG0599|consen 175 PGEKLRELCGTPGYLAPETIKCSMYEN---HP---GYSKEVD--EWACGVIMYTLLAGCPPFWHRKQMLMLRMI---MEG 243 (411)
T ss_pred CchhHHHhcCCCcccChhheeeecccC---CC---Cccchhh--HHHHHHHHHHHHcCCCchhHHHHHHHHHHH---Hhc
Confidence 65421 000 0 011244444 1 01 1122222 2332211 110 11111 112
Q ss_pred cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 585 MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+....+.+.+....+.+++.+|++.+|.+|-|.+|+++.
T Consensus 244 kyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH 283 (411)
T KOG0599|consen 244 KYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH 283 (411)
T ss_pred ccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence 2333344556667788899999999999999999999863
|
|
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-16 Score=156.84 Aligned_cols=117 Identities=31% Similarity=0.453 Sum_probs=92.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---------hhhhHHHHHHHHH--------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---------AFKSFDVACDMMK--------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---------~~~~f~~e~~~~~--------------------~Lv~ey~~~ 456 (639)
.++|.+|++.. .++..+++|.+...... ....+..|+.+++ .+++||+++
T Consensus 11 g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 90 (267)
T cd06628 11 GSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPG 90 (267)
T ss_pred CCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCC
Confidence 45788999875 35788999987543221 1234455555432 268899999
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++|.+++... ..+++.....++.+++.|++||| ..+++||||||+||++++++.++++|||+++...
T Consensus 91 ~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lH---~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~ 157 (267)
T cd06628 91 GSVAALLNNY-GAFEETLVRNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLE 157 (267)
T ss_pred CCHHHHHHhc-cCccHHHHHHHHHHHHHHHHHHH---hcCcccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence 9999988643 45788889999999999999999 5679999999999999999999999999988765
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=149.29 Aligned_cols=120 Identities=25% Similarity=0.379 Sum_probs=94.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-hh-hHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-FK-SFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-~~-~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
..+|.||++.- ..+..||+|++....... +. .-.+|+.++. ++|||||+. +|..
T Consensus 87 GtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLks 165 (419)
T KOG0663|consen 87 GTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKS 165 (419)
T ss_pred CcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHH
Confidence 34899999985 467899999998765321 11 1223444422 379999987 8888
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+++.-...+.-.+..-+..|+.+|++||| ..-|+|||||++|+|+..++..||+|||+||.+++..
T Consensus 166 l~d~m~q~F~~~evK~L~~QlL~glk~lH---~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~ 231 (419)
T KOG0663|consen 166 LMETMKQPFLPGEVKTLMLQLLRGLKHLH---DNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL 231 (419)
T ss_pred HHHhccCCCchHHHHHHHHHHHHHHHHHh---hceeEecccchhheeeccCCcEEecccchhhhhcCCc
Confidence 88764456777778889999999999999 5669999999999999999999999999999987653
|
|
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-16 Score=163.31 Aligned_cols=116 Identities=28% Similarity=0.395 Sum_probs=88.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .++..+|+|.+.... ....+.+..|+.+++ .+|+||+. ++
T Consensus 11 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~ 89 (372)
T cd07853 11 GAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SD 89 (372)
T ss_pred CCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cC
Confidence 46889999885 468899999875432 122334445554422 25677776 46
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+.+.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+...
T Consensus 90 l~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~ 154 (372)
T cd07853 90 LHKIIVS-PQPLSSDHVKVFLYQILRGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEE 154 (372)
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHHEEECCCCCEEeccccceeecc
Confidence 6666543 345889999999999999999999 6789999999999999999999999999998654
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-16 Score=161.20 Aligned_cols=115 Identities=26% Similarity=0.353 Sum_probs=90.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHH-----------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMM-----------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~-----------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..+...+ ..+|+||+++|+|
T Consensus 10 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L 89 (324)
T cd05589 10 GHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDL 89 (324)
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcH
Confidence 467899998764 578999999864431 1122333333221 1378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
...++. ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++..
T Consensus 90 ~~~~~~--~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~ 151 (324)
T cd05589 90 MMHIHT--DVFSEPRAVFYAACVVLGLQYLH---ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEG 151 (324)
T ss_pred HHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCcEEeCcccCCccC
Confidence 888764 35899999999999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=154.77 Aligned_cols=211 Identities=22% Similarity=0.258 Sum_probs=134.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++... ++..+++|.+...... ....+..+++.++ .+|+||+++ ++.+.+
T Consensus 10 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~~l 88 (283)
T cd05118 10 GTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLI 88 (283)
T ss_pred CCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC-CHHHHH
Confidence 457889998864 6788999988654322 2334444544422 267889875 787777
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
......+++.++..++.+++.|++||| ..+|+|+|||++||+++.++.++++|||.+.........
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~ 165 (283)
T cd05118 89 KDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYR 165 (283)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHHHH---HCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCccccc
Confidence 654457899999999999999999999 678999999999999999999999999998766543200
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC----Ccceeee------cccccccc-
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI----SVMEVVD------VNLLSMED- 587 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~----~~~~~~d------~~l~~~~~- 587 (639)
.+. ...+.++|+| | ||+.|.... +......-....... ...+..+ ........
T Consensus 166 ~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T cd05118 166 APELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGK--SEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGM 243 (283)
T ss_pred CcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhcccccc
Confidence 000 1233478898 6 787765421 111111001011100 0000000 00000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......++....+.+++..|++.+|.+||+|.+++.
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~ 279 (283)
T cd05118 244 PLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA 279 (283)
T ss_pred CHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence 000111234567889999999999999999999975
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=156.30 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=130.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... +|..+++|.+..... .....+..|+..++ .+|+||+++++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~ 90 (257)
T cd08225 11 GSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRI 90 (257)
T ss_pred CCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHH
Confidence 467889998875 478899999865422 12234455555432 2689999999999988
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc--------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF-------- 533 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~-------- 533 (639)
... ...++|..+..++.+++.|++||| ...++|+||||+||+++++. .+|++|||.+..........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 167 (257)
T cd08225 91 NRQRGVLFSEDQILSWFVQISLGLKHIH---DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPY 167 (257)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCcc
Confidence 652 335899999999999999999999 66799999999999999874 57999999987664332110
Q ss_pred ---cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 534 ---TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 534 ---~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
+. ...+.++|+| | +|+.|... ....+++.........+. . ....
T Consensus 168 ~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~-----~~~~~~~~~~~~~~~~~~-~--------------~~~~ 227 (257)
T cd08225 168 YLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG-----NNLHQLVLKICQGYFAPI-S--------------PNFS 227 (257)
T ss_pred ccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHhcccCCCC-C--------------CCCC
Confidence 00 1112356777 5 56666431 222333332222111110 0 1112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.++..+|+..+|++||+|.||++
T Consensus 228 ~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 228 RDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred HHHHHHHHHHhccChhhCcCHHHHhh
Confidence 34677888999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-16 Score=156.37 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=127.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-----hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-----RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-----~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.+|++.. ..+..+++|.+..... .....+..|++.++ .+|+||+++++|.
T Consensus 13 g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~ 92 (263)
T cd06625 13 GAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVK 92 (263)
T ss_pred CCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHH
Confidence 35788998875 4578999998754321 12234555655533 2678999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
+++... ..+++....+++.+++.|++||| ..+++||||||+||+++.++.++++|||+++.........
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~ 168 (263)
T cd06625 93 DQLKAY-GALTETVTRKYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVT 168 (263)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCC
Confidence 888642 35788888999999999999999 6689999999999999999999999999987553221100
Q ss_pred -------cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 -------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 -------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ...+.++||| | +|+.|..+. .......+. ...... + ..+
T Consensus 169 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~--~~~~~~~~~---~~~~~~----~----------~~~ 229 (263)
T cd06625 169 GTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF--EAMAAIFKI---ATQPTN----P----------QLP 229 (263)
T ss_pred cCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc--chHHHHHHH---hccCCC----C----------CCC
Confidence 00 0112356666 4 666554321 000000000 000000 0 011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
......+.++..+|+..+|++||++.|+++.
T Consensus 230 ~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~ 260 (263)
T cd06625 230 SHVSPDARNFLRRTFVENAKKRPSAEELLRH 260 (263)
T ss_pred ccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence 1223456778889999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-16 Score=156.46 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=91.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... .+..+++|.+..... .....+..|++.++ .+|+||+. ++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~ 89 (284)
T cd07860 11 GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFM 89 (284)
T ss_pred CCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHH
Confidence 467889999764 578999998865432 12234555665533 26789995 5788877
Q ss_pred cc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 464 YS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 464 ~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.. ....+++....+++.++++|++||| ..+++||||||+||+++.++.+|++|||+++...
T Consensus 90 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh---~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~ 151 (284)
T cd07860 90 DASPLSGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG 151 (284)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEeeccchhhcc
Confidence 64 2346899999999999999999999 6689999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-16 Score=161.31 Aligned_cols=116 Identities=30% Similarity=0.334 Sum_probs=88.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHH-HH--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACD-MM--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~-~~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+|+|++..... .....+..+.. .+ ..+|+||+++|+|..
T Consensus 6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 85 (321)
T cd05603 6 GSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFF 85 (321)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHH
Confidence 468899999864 578999999864321 11122222222 11 137899999999988
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..++......++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 86 ~l~~~-~~~~~~~~~~~~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~ 146 (321)
T cd05603 86 HLQRE-RCFLEPRARFYAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEG 146 (321)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEccCCCCccC
Confidence 77542 34677778889999999999999 678999999999999999999999999998753
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-16 Score=158.11 Aligned_cols=212 Identities=24% Similarity=0.250 Sum_probs=131.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++... +|..+++|++..... .....+..|++.++ .+++||++ ++|.+++
T Consensus 10 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~ 88 (283)
T cd07835 10 GTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYM 88 (283)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHH
Confidence 457889998864 689999998865432 12234555555532 26789985 6888887
Q ss_pred ccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 464 YSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 464 ~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
.... ..+++..+.+++.++++||+||| ..+++||||+|+||+++.++.++++|||+++........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~i~~~L~~lH---~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~ 165 (283)
T cd07835 89 DSSPLTGLDPPLIKSYLYQLLQGIAYCH---SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWY 165 (283)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCC
Confidence 6532 46899999999999999999999 668999999999999999999999999998765321110
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC-c----ceeeecc--cc-ccccc
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS-V----MEVVDVN--LL-SMEDK 588 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~-~----~~~~d~~--l~-~~~~~ 588 (639)
.+. ...+.++|+| | ||+.|.... .....+...++... +.. . ...-+.. .. .....
T Consensus 166 ~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T cd07835 166 RAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD-SEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQD 244 (283)
T ss_pred CCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccc
Confidence 011 0113368888 7 787775421 01111111111100 100 0 0000000 00 00000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...........+.+++.+|++.+|++||+|.||++
T Consensus 245 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 279 (283)
T cd07835 245 LSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ 279 (283)
T ss_pred hhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 00000111245778999999999999999999975
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=157.00 Aligned_cols=195 Identities=22% Similarity=0.319 Sum_probs=129.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++... ++..+++|.+.... ......+..+++.++ .+|+||+. |++.+.
T Consensus 26 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~ 104 (308)
T cd06634 26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDL 104 (308)
T ss_pred CCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHH
Confidence 467889999864 57889999876432 122334555555532 26889996 678777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------ccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FTQ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~~ 535 (639)
+......+++.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||++......... .+.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE 181 (308)
T cd06634 105 LEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPE 181 (308)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHH
Confidence 6544456899999999999999999999 668999999999999999999999999998865433211 000
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | ||+.|..+.- ....+..+..... +... .......
T Consensus 182 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~---------~~~~---------~~~~~~~ 242 (308)
T cd06634 182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-AMSALYHIAQNES---------PALQ---------SGHWSEY 242 (308)
T ss_pred HHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc-HHHHHHHHhhcCC---------CCcC---------cccccHH
Confidence 1123367887 6 6776653210 0000111111000 0000 0122344
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|++||++.+|++.
T Consensus 243 ~~~li~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 243 FRNFVDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred HHHHHHHHhhCCcccCCCHHHHhhC
Confidence 6778889999999999999998864
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-18 Score=147.98 Aligned_cols=164 Identities=33% Similarity=0.488 Sum_probs=126.6
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
+-++.+.+.|-||+|.++ .+|..+..+.+|+.|++++|++. .+|.++++|+.|+.|+++-|++. +.|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778888899999998 67888899999999999999886 57888899999999999999886 7788888888888
Q ss_pred EEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 152 DLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 152 ~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
.|||.+|++.. ..+|..|+.++.|+-|+|++|.|.- +|..++++++|+.|.+.+|.+-.
T Consensus 106 vldltynnl~e-----------------~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~--- 164 (264)
T KOG0617|consen 106 VLDLTYNNLNE-----------------NSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLS--- 164 (264)
T ss_pred hhhcccccccc-----------------ccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhh---
Confidence 88887777654 2567778888888888888888854 45568888888888888776643
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccc
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL 294 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 294 (639)
+|.+++.++.|++|.+.+|+++ .+|..+
T Consensus 165 ----------------------------------lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 165 ----------------------------------LPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred ----------------------------------CcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 3555666666777777777766 334333
|
|
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-16 Score=159.13 Aligned_cols=116 Identities=38% Similarity=0.528 Sum_probs=92.3
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhh--hHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFK--SFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~--~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.... +..+|+|.++........ ....|...++ .+|+||+++++|.+++
T Consensus 10 G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l 89 (260)
T PF00069_consen 10 GGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYL 89 (260)
T ss_dssp ESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHH
T ss_pred CCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 4688999998765 568999999766433221 1122444432 2689999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
. ....+++..+..++.++++||+||| +.+++|+||||.||+++.+++++++|||.+...
T Consensus 90 ~-~~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~ 148 (260)
T PF00069_consen 90 Q-KNKPLSEEEILKIAYQILEALAYLH---SKGIVHRDIKPENILLDENGEVKLIDFGSSVKL 148 (260)
T ss_dssp H-HHSSBBHHHHHHHHHHHHHHHHHHH---HTTEEESSBSGGGEEESTTSEEEESSGTTTEES
T ss_pred c-ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc
Confidence 7 2345899999999999999999999 568999999999999999999999999998753
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-16 Score=157.97 Aligned_cols=116 Identities=27% Similarity=0.414 Sum_probs=91.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+++|.+...... ....+..|+++++ .+|+||+++ +|.+++.
T Consensus 16 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~ 94 (291)
T cd07844 16 GSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMD 94 (291)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCC-CHHHHHH
Confidence 457889999865 6789999998654321 1223445655543 278999984 8988886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.....+++.....++.+++.||+||| ..+++||||||+||+++.++.+|++|||+++..
T Consensus 95 ~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 153 (291)
T cd07844 95 DCGGGLSMHNVRLFLFQLLRGLAYCH---QRRVLHRDLKPQNLLISERGELKLADFGLARAK 153 (291)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccCCHHHEEEcCCCCEEECcccccccc
Confidence 54456889999999999999999999 668999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-16 Score=160.19 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=129.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~ 460 (639)
+++|.+|++... .+..+++|++.... ......+..|+..++ .+|+||++ ++|.
T Consensus 18 g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~ 96 (337)
T cd07852 18 GAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLH 96 (337)
T ss_pred CCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc-cCHH
Confidence 467889999865 57889999874321 111222333333321 36788887 5887
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
.++... .++|..+..++.++|.||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 97 ~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~ 171 (337)
T cd07852 97 AVIRAN--ILEDVHKRYIMYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTD 171 (337)
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhc
Confidence 777543 6899999999999999999999 678999999999999999999999999999865432210
Q ss_pred --------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC------------Ccceee
Q 041082 533 --------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI------------SVMEVV 578 (639)
Q Consensus 533 --------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~------------~~~~~~ 578 (639)
.+. ...+.++|+| | ||+.|...... ......+....+. ...+++
T Consensus 172 ~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (337)
T cd07852 172 YVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTST--LNQLEKIIEVIGPPSAEDIESIKSPFAATML 249 (337)
T ss_pred ccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHHHHhhhHHHhh
Confidence 000 1122368888 6 88877642110 0000000000000 000111
Q ss_pred eccccccccc-cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 579 DVNLLSMEDK-YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 579 d~~l~~~~~~-~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+ .+...... .....++....+.+++..|++.+|++||++.++++.
T Consensus 250 ~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~ 295 (337)
T cd07852 250 D-SLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH 295 (337)
T ss_pred h-hcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence 1 00000000 000011134567889999999999999999999964
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-16 Score=156.16 Aligned_cols=116 Identities=27% Similarity=0.395 Sum_probs=88.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-hhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+++|.+....... ...+..|+..++ .+|+||+. +++...+.
T Consensus 16 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 94 (291)
T cd07870 16 GSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMI 94 (291)
T ss_pred cCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHH
Confidence 45788999875 457899999986543221 123444554432 26889996 67766655
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.....+.+.+...++.+++.||+||| ..+++||||||+||+++.+++++++|||+++..
T Consensus 95 ~~~~~~~~~~~~~~~~qi~~~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~ 153 (291)
T cd07870 95 QHPGGLHPYNVRLFMFQLLRGLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAK 153 (291)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEEcCCCcEEEecccccccc
Confidence 43345788888899999999999999 567999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-16 Score=157.35 Aligned_cols=213 Identities=21% Similarity=0.218 Sum_probs=133.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+++|.+..... .....+..|++.++ .+|+||+++|+|.+++.
T Consensus 12 G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~ 91 (308)
T cd06615 12 GNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 91 (308)
T ss_pred CCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHH
Confidence 457889998754 577888888764322 22234555665533 26899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------cc-
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------FT- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------~~- 534 (639)
.. ..+++.....++.++++||+|||+ ..+++||||||.||+++.++.++++|||+++........ .+
T Consensus 92 ~~-~~~~~~~~~~~~~~i~~~l~~lH~--~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE 168 (308)
T cd06615 92 KA-GRIPENILGKISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 168 (308)
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHHh--hCCEEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChh
Confidence 53 457888889999999999999995 247999999999999999999999999998765332110 00
Q ss_pred ---ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC-cceeee-cccccccc-------------
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS-VMEVVD-VNLLSMED------------- 587 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~-~~~~~d-~~l~~~~~------------- 587 (639)
....+.++|+| | ||+.|.... +...+..+........ ...... +.......
T Consensus 169 ~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (308)
T cd06615 169 RLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP--DAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYI 246 (308)
T ss_pred HhcCCCCCccchHHHHHHHHHHHHhCCCCCCCc--chhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHH
Confidence 01123378898 6 888876421 1111111111100000 000000 00000000
Q ss_pred ---ccccch-HHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 588 ---KYFTTK-KQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 588 ---~~~~~~-~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.....+ ......+.+++.+|+..+|++||++.||++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~ 287 (308)
T cd06615 247 VNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH 287 (308)
T ss_pred hcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000000 0122357789999999999999999999875
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-16 Score=155.34 Aligned_cols=211 Identities=25% Similarity=0.283 Sum_probs=134.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
+++|.+|++... .+..+++|.+.... ......+..|+..++ .+|+||+++ +|.+
T Consensus 10 g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~ 88 (287)
T cd07840 10 GTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTG 88 (287)
T ss_pred CCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccc-cHHH
Confidence 467899999876 47899999987653 222234444544421 267889874 8888
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC---C------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ---S------ 532 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~---~------ 532 (639)
++......+++..+..++.++++|++||| ..+++|+||||+||++++++.+|++|||++........ .
T Consensus 89 ~~~~~~~~~~~~~~~~i~~~i~~al~~LH---~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~ 165 (287)
T cd07840 89 LLDSPEVKFTESQIKCYMKQLLEGLQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITL 165 (287)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCccccccccccc
Confidence 77654457899999999999999999999 56799999999999999999999999999986654320 0
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC----CCcceeee----cccccccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP----ISVMEVVD----VNLLSMED 587 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~----~~~~~~~d----~~l~~~~~ 587 (639)
.+. ...+.++||| | ||+.|....- .......+..... ....+..+ ........
T Consensus 166 ~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (287)
T cd07840 166 WYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGST--ELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKP 243 (287)
T ss_pred ccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchhhccccccchhhhhcccccc
Confidence 001 1123478888 6 7887765321 1111111111110 00000000 00000000
Q ss_pred --c-cccchHH-HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 --K-YFTTKKQ-CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 --~-~~~~~~~-~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. ..+.... +...+.+++.+|+..+|++||++.+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 283 (287)
T cd07840 244 YKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ 283 (287)
T ss_pred chhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 0 0000011 2457889999999999999999999986
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=154.14 Aligned_cols=208 Identities=18% Similarity=0.181 Sum_probs=130.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-hhhHHHHHHHH-----------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-FKSFDVACDMM-----------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-~~~f~~e~~~~-----------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++.. .++..+|+|.+....... ......+...+ ..+|+||++ |++.+
T Consensus 10 g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~ 88 (282)
T cd07831 10 GTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYE 88 (282)
T ss_pred cccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHH
Confidence 45788999875 467899999876432111 11111222221 126788886 57777
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--------- 532 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--------- 532 (639)
.+......++|.++..++.++++||+||| ..+++||||||+||+++. +.+||+|||+++.+......
T Consensus 89 ~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y 164 (282)
T cd07831 89 LIKGRKRPLPEKRVKSYMYQLLKSLDHMH---RNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWY 164 (282)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCccc
Confidence 77654456899999999999999999999 668999999999999999 99999999999866432210
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC------------cceeeecccccc
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------------VMEVVDVNLLSM 585 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------------~~~~~d~~l~~~ 585 (639)
.+. ...+.++|+| | +|+.|.... +......+........ ......+.....
T Consensus 165 ~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (282)
T cd07831 165 RAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGT--NELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGT 242 (282)
T ss_pred CChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCC--CHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccc
Confidence 011 1123478888 6 777776431 1222223322222111 000000000000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. ...........+.+++.+|++.+|++||++.++++
T Consensus 243 ~--~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 278 (282)
T cd07831 243 G--LRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR 278 (282)
T ss_pred c--HHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence 0 00001233567889999999999999999999975
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=154.14 Aligned_cols=114 Identities=26% Similarity=0.241 Sum_probs=87.8
Q ss_pred CcceEEEe-cCCceeeeEEechh--hhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 410 GSIYKARI-QDGMKVAVKVFDLQ--YERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 410 g~vy~~~l-~~g~~vavK~l~~~--~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
+.+|.+.- ..+..+|+|++... .......+..|+..++ .+++||+++|++.+++...
T Consensus 14 ~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~ 93 (314)
T cd08216 14 MIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTH 93 (314)
T ss_pred ceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHh
Confidence 34444432 36889999998654 2223345556655532 2678999999999988752
Q ss_pred -CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 467 -NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 467 -~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
...+++.....++.++++||+||| ..+|+|||||++||+++.++.++++|||.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~ 151 (314)
T cd08216 94 FPEGLPELAIAFILKDVLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSM 151 (314)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceee
Confidence 345788888999999999999999 668999999999999999999999999988654
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-16 Score=156.95 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=93.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+...... ....+..|+.+++ .+|+||+++|+|.++
T Consensus 11 G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~ 90 (285)
T cd05630 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFH 90 (285)
T ss_pred CCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHH
Confidence 468899988764 5789999988643221 1223444555432 268999999999988
Q ss_pred ccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.. ....+++.++..++.+++.|++||| ..+|+||||||+||+++.++.++++|||++....
T Consensus 91 l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 153 (285)
T cd05630 91 IYHMGEAGFEEGRAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVP 153 (285)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHEEECCCCCEEEeeccceeecC
Confidence 854 2345889999999999999999999 7789999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=155.18 Aligned_cols=115 Identities=29% Similarity=0.427 Sum_probs=92.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.+|++... .+..+++|.+..... .....+..|.+.++ .+|+||+++|+|.++
T Consensus 12 g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~ 91 (305)
T cd05609 12 GAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATL 91 (305)
T ss_pred CCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHH
Confidence 467889988764 467899998865432 12234445554432 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+... ..+++.....++.+++.|++|+| ..+++||||||.||+++.++.++++|||+++.
T Consensus 92 l~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~ 150 (305)
T cd05609 92 LKNI-GALPVDMARMYFAETVLALEYLH---NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI 150 (305)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence 8653 35889888999999999999999 66899999999999999999999999999874
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=159.93 Aligned_cols=115 Identities=26% Similarity=0.290 Sum_probs=85.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.- ..+..+|+|.+..... .....+..|+..++ .+|+||+++
T Consensus 28 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~- 106 (355)
T cd07874 28 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA- 106 (355)
T ss_pred cCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhcc-
Confidence 56889998875 3578899998864321 12223333443322 367788864
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++.+.+. ..+++.+...++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++....
T Consensus 107 ~l~~~~~---~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~ 171 (355)
T cd07874 107 NLCQVIQ---MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 171 (355)
T ss_pred cHHHHHh---hcCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHHEEECCCCCEEEeeCcccccCCC
Confidence 5555543 24788888999999999999999 67899999999999999999999999999986543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=152.63 Aligned_cols=209 Identities=22% Similarity=0.210 Sum_probs=127.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHH----------------------------HhhhhhcCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMM----------------------------KKLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~----------------------------~~Lv~ey~~ 455 (639)
.++|.||++... .+..+|+|.+...... ....+..|...+ ..+++||++
T Consensus 11 g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~ 90 (288)
T cd07863 11 GAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD 90 (288)
T ss_pred cCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccc
Confidence 467899999764 5789999988653211 111222232221 136778887
Q ss_pred CCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--
Q 041082 456 HGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-- 532 (639)
Q Consensus 456 ~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-- 532 (639)
+++.+++... ...+++.....++.+++.||+|+| +.+|+||||||+||+++.++.+|++|||+++........
T Consensus 91 -~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~ 166 (288)
T cd07863 91 -QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTP 166 (288)
T ss_pred -cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccCccccccCcccCCC
Confidence 4777777542 234889999999999999999999 667999999999999999999999999999876432211
Q ss_pred --------ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC--c-------ceeeecc
Q 041082 533 --------FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS--V-------MEVVDVN 581 (639)
Q Consensus 533 --------~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~-------~~~~d~~ 581 (639)
.+. ...+.++|+| | +|+.|..... ....+....... .+.. . ...+.+.
T Consensus 167 ~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
T cd07863 167 VVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS-EADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPR 245 (288)
T ss_pred ccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCC-HHHHHHHHHHHhCCCChhhCcccccccccccCCC
Confidence 000 1123378888 6 6776653211 111111111110 0000 0 0001110
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ....++....+.+++.+|++.+|++|||+.|++.
T Consensus 246 ~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~ 284 (288)
T cd07863 246 GPRPV---QSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ 284 (288)
T ss_pred CCCch---HHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 00000 0001122345678899999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=155.47 Aligned_cols=198 Identities=21% Similarity=0.253 Sum_probs=124.9
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhh-hhhhHHHHHHHH---------------------HhhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYER-AFKSFDVACDMM---------------------KKLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~-~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++.... +..+|+|.+...... ....+..+...+ ..+++||+++ ++.+..
T Consensus 26 g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~l~ 104 (296)
T cd06618 26 GTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMST-CLDKLL 104 (296)
T ss_pred cCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccCc-CHHHHH
Confidence 3578899998865 889999998643211 112222232221 1257788753 565555
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------c
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------F 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------~ 533 (639)
......+++..+..++.++++|++|||. ..+|+||||+|+||++++++.+||+|||++..+...... .
T Consensus 105 ~~~~~~l~~~~~~~i~~~i~~~l~~lH~--~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~a 182 (296)
T cd06618 105 KRIQGPIPEDILGKMTVAIVKALHYLKE--KHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMA 182 (296)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHh--hCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccC
Confidence 4333468999999999999999999994 247999999999999999999999999998765422110 0
Q ss_pred cc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 TQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 ~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+. ...+.++|+| | +|+.|....- .. .+............ +. ....+
T Consensus 183 PE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~---~~~~~~~~~~~~~~-----~~--------~~~~~ 245 (296)
T cd06618 183 PERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCK-TE---FEVLTKILQEEPPS-----LP--------PNEGF 245 (296)
T ss_pred HhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcch-hH---HHHHHHHhcCCCCC-----CC--------CCCCC
Confidence 00 0122367777 6 7777754210 00 11111111111000 00 00112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
...+.+++.+|++.+|++||++.+|++.
T Consensus 246 ~~~l~~li~~~l~~~p~~Rp~~~~il~~ 273 (296)
T cd06618 246 SPDFCSFVDLCLTKDHRKRPKYRELLQH 273 (296)
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 3457788899999999999999999864
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-16 Score=156.60 Aligned_cols=118 Identities=25% Similarity=0.357 Sum_probs=91.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+++|.+...... ....+..|+..++ .+|+||++ ++|.+
T Consensus 16 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~ 94 (293)
T cd07843 16 GTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKS 94 (293)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHH
Confidence 457889999875 5788999988654322 1123334444322 36788987 48888
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.+......+++.....++.+++.||+||| ..+++||||||+||+++.++.++++|||+++....
T Consensus 95 ~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~ 158 (293)
T cd07843 95 LMETMKQPFLQSEVKCLMLQLLSGVAHLH---DNWILHRDLKTSNLLLNNRGILKICDFGLAREYGS 158 (293)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence 77654456899999999999999999999 56799999999999999999999999999886644
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=154.06 Aligned_cols=118 Identities=26% Similarity=0.335 Sum_probs=93.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|...++ .+|+||+++|+|.++
T Consensus 12 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~ 91 (331)
T cd05597 12 GAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTL 91 (331)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHH
Confidence 468899998864 578999999864221 12233445544422 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+......++......++.+++.||+||| ..+|+||||||.||+++.++.+|++|||+++.+.
T Consensus 92 l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~ 153 (331)
T cd05597 92 LSKFEDRLPEDMARFYLAEMVLAIDSVH---QLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLL 153 (331)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeEECCCCHHHEEECCCCCEEEEECCceeecC
Confidence 8654456888888999999999999999 6789999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-16 Score=156.78 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=129.3
Q ss_pred cCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
||.++...- .++..+++|.+++... ........|+...+ .+||+|+++|++++.+.
T Consensus 17 fG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~ 96 (426)
T KOG0589|consen 17 FGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIK 96 (426)
T ss_pred cchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHH
Confidence 565554332 2467899999876542 22223334444432 36899999999999987
Q ss_pred cCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccc---
Q 041082 465 SSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC--- 540 (639)
Q Consensus 465 ~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~--- 540 (639)
... ..++..+..++..++..|+.||| ...|+|||||+.||++..+..+|++|||+|+.+.+........++|.
T Consensus 97 ~~k~~~f~E~~i~~~~~Q~~~av~ylH---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~Ym 173 (426)
T KOG0589|consen 97 EQKGVLFPEERILKWFVQILLAVNYLH---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYM 173 (426)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHHH---hhhhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCCCccc
Confidence 644 56788889999999999999999 77899999999999999999999999999999987752211122222
Q ss_pred ------------ccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 541 ------------HHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 541 ------------~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
|+|+| | +-++++. +.++...+....+. .++| .+......
T Consensus 174 cPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~-----a~~m~~Li~ki~~~----~~~P-----------lp~~ys~e 233 (426)
T KOG0589|consen 174 CPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFK-----ASNMSELILKINRG----LYSP-----------LPSMYSSE 233 (426)
T ss_pred CHHHhCCCCCCccCcchhhcchHHHHHhcccccC-----ccchHHHHHHHhhc----cCCC-----------CCccccHH
Confidence 55555 4 2222221 12222222222111 1111 12233445
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+-.++-.|+..+|+.||++.+++.+
T Consensus 234 l~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 234 LRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred HHHHHHHHhhcCCccCCCHHHHhhC
Confidence 6667779999999999999999987
|
|
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=152.69 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHH----------------HHhhhhhcCCCCCchhccccCCcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDM----------------MKKLVLEYMPHGSLEKCLYSSNYI 469 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~----------------~~~Lv~ey~~~gsL~~~l~~~~~~ 469 (639)
.++|.||++.. ..+..+++|...............+... ...+|+||+++|+|.+++.... .
T Consensus 27 g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~-~ 105 (267)
T PHA03390 27 GKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKEG-K 105 (267)
T ss_pred CCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhcC-C
Confidence 45788998875 4577888988764322211111111100 1237899999999999887543 7
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCC-c------cc----cc
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQS-F------TQ----NT 537 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~-~------~~----~~ 537 (639)
++|.+...++.++++|++||| ..+++||||||+||+++.++ .++++|||+++........ . +. ..
T Consensus 106 l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~ 182 (267)
T PHA03390 106 LSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHN 182 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcCCC
Confidence 899999999999999999999 66799999999999999988 9999999998765433211 0 00 11
Q ss_pred cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhcc
Q 041082 538 NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECT 608 (639)
Q Consensus 538 ~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~ 608 (639)
.+.++||| | ||+.|.............|.... ... .. .....-..+.++..+|+
T Consensus 183 ~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~-~~---------------~~~~~~~~~~~li~~~l 245 (267)
T PHA03390 183 YDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QKK-LP---------------FIKNVSKNANDFVQSML 245 (267)
T ss_pred CCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-ccc-CC---------------cccccCHHHHHHHHHHh
Confidence 23367888 6 78877764333333333443221 110 00 01112234667788999
Q ss_pred CCCCCCCCC-HHHHHH
Q 041082 609 AESPKQRIN-AKESVT 623 (639)
Q Consensus 609 ~~~p~~RP~-m~~v~~ 623 (639)
+.+|.+||+ +.|+++
T Consensus 246 ~~~p~~R~~~~~~~l~ 261 (267)
T PHA03390 246 KYNINYRLTNYNEIIK 261 (267)
T ss_pred ccChhhCCchHHHHhc
Confidence 999999996 688764
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=150.74 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=127.1
Q ss_pred cCcceEEEe-cCCceeeeEEechhhhhh--------------hhhHHHHHHHHHh----------------------hhh
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYERA--------------FKSFDVACDMMKK----------------------LVL 451 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~~~--------------~~~f~~e~~~~~~----------------------Lv~ 451 (639)
+|.|-++.- .++..+|+|+++...... ......|+.+++. ||.
T Consensus 110 yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVl 189 (576)
T KOG0585|consen 110 YGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVL 189 (576)
T ss_pred cceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEE
Confidence 667776663 468999999986533211 1245566666654 688
Q ss_pred hcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC
Q 041082 452 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 452 ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~ 531 (639)
||+..|.+.+.= .....++..+..++..++..||+||| ..+|+||||||+|+|+++++.+||+|||.+........
T Consensus 190 ey~s~G~v~w~p-~d~~els~~~Ar~ylrDvv~GLEYLH---~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~ 265 (576)
T KOG0585|consen 190 EYCSKGEVKWCP-PDKPELSEQQARKYLRDVVLGLEYLH---YQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSD 265 (576)
T ss_pred EeccCCccccCC-CCcccccHHHHHHHHHHHHHHHHHHH---hcCeeccccchhheEEcCCCcEEeeccceeeecccCCc
Confidence 999988775432 12222888889999999999999999 67899999999999999999999999999886633221
Q ss_pred C-----cccccccc----ccccc-cCCC---CCCCccCCCccchHHHHHhhCCCC---cc----eeeecccccccccccc
Q 041082 532 S-----FTQNTNTC----HHRIY-GTRR---NPQMNFFSGEMTLKSWVNDLLPIS---VM----EVVDVNLLSMEDKYFT 591 (639)
Q Consensus 532 ~-----~~~~~~~~----~~dvy-Gtg~---~p~~~~~~~~~~l~~~~~~~~~~~---~~----~~~d~~l~~~~~~~~~ 591 (639)
+ ....++|. ..-.+ |.+. .-.-|+|+-|+.|--++....|.. .. .++...+.- .
T Consensus 266 ~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~f------P 339 (576)
T KOG0585|consen 266 EGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEF------P 339 (576)
T ss_pred cccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccC------C
Confidence 1 01111221 00000 0000 001123444455544444444431 11 222222211 1
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..++....+-+|+.+-+..+|.+|.+..+|...
T Consensus 340 ~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~H 372 (576)
T KOG0585|consen 340 ENPEINEDLKDLIKRLLEKDPEQRITLPDIKLH 372 (576)
T ss_pred CcccccHHHHHHHHHHhhcChhheeehhhheec
Confidence 112344556677778888999999999998754
|
|
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=153.78 Aligned_cols=118 Identities=31% Similarity=0.362 Sum_probs=94.4
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.||++.... +..+++|.+...... ..+.+..+.+.++ .+|+||+.+++|.++
T Consensus 12 g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 91 (316)
T cd05574 12 GDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRL 91 (316)
T ss_pred CccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHH
Confidence 4578899998764 789999988654321 2334555554432 368999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... ...+++.....++.++++||+||| ..+++||||||+||+++.++.++++|||++....
T Consensus 92 ~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~ 154 (316)
T cd05574 92 LQRQPGKCLSEEVARFYAAEVLLALEYLH---LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSD 154 (316)
T ss_pred HHhCCCCccCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence 8652 346899999999999999999999 6789999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=150.23 Aligned_cols=195 Identities=22% Similarity=0.279 Sum_probs=129.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gs 458 (639)
.++|.+|++... .+..+++|.+...... ...+..|+... ..+|+||+++++
T Consensus 17 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~ 95 (275)
T cd06608 17 GTYGKVYKARHKKTGQLVAIKIMDIIEDE-EEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGS 95 (275)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecCchh-HHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCc
Confidence 457789998874 5678999988654332 23455554432 136889999999
Q ss_pred chhccccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 459 LEKCLYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 459 L~~~l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
|.+++... ...+++..+..++.+++.||+||| +.+++||||+++||++++++.++++|||++..........
T Consensus 96 L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~ 172 (275)
T cd06608 96 VTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNT 172 (275)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcC
Confidence 98887642 356899999999999999999999 6789999999999999999999999999987543221100
Q ss_pred ---------cc---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 534 ---------TQ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 ---------~~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
+. ...+.++||| | ||+.|..+.. ....+.... .. ..+.+
T Consensus 173 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~----~~-----~~~~~---- 238 (275)
T cd06608 173 FIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH-PMRALFKIP----RN-----PPPTL---- 238 (275)
T ss_pred ccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc-hHHHHHHhh----cc-----CCCCC----
Confidence 00 0012256777 5 6666654210 011111100 00 00011
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.........+.+++.+|+..+|++|||+.|+++
T Consensus 239 ----~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 239 ----KSPENWSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred ----CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 011223446778899999999999999999986
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=149.87 Aligned_cols=195 Identities=26% Similarity=0.291 Sum_probs=133.1
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhhh-hhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYERA-FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~~-~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
++|.+|++...+ +..+++|++....... .+.+..+++..+ .+++||+++++|.+++..
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~ 80 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK 80 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence 468899999864 8899999987654433 456666665532 268899999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----c------c-
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----F------T- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~------~- 534 (639)
.. .+++.++..++.+++++++||| ..+++|+||+++||+++.++.++++|||.+......... . +
T Consensus 81 ~~-~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE 156 (244)
T smart00220 81 RG-RLSEDEARFYARQILSALEYLH---SNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPE 156 (244)
T ss_pred cc-CCCHHHHHHHHHHHHHHHHHHH---HcCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHH
Confidence 32 2889999999999999999999 668999999999999999999999999999876543110 0 0
Q ss_pred ---ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.+.|+| | +|..|.... .....+.++....... .. .........+.+
T Consensus 157 ~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~-~~~~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~ 219 (244)
T smart00220 157 VLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD-DQLLELFKKIGKPKPP----FP------------PPEWKISPEAKD 219 (244)
T ss_pred HHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHhccCCC----Cc------------cccccCCHHHHH
Confidence 01112367777 5 565554321 1111111211110000 00 000003346788
Q ss_pred HHhhccCCCCCCCCCHHHHHH
Q 041082 603 LAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++.+|+..+|++||++.++++
T Consensus 220 ~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 220 LIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred HHHHHccCCchhccCHHHHhh
Confidence 999999999999999999986
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=149.71 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=128.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.+++.+|++.. .++..+++|.+..... .....+..+++.++ .+|+||+++++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~ 90 (256)
T cd08530 11 GSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAI 90 (256)
T ss_pred CCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHH
Confidence 35678998764 4678899998865431 11233334444322 3689999999999887
Q ss_pred cc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------
Q 041082 464 YS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------ 534 (639)
Q Consensus 464 ~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------ 534 (639)
.. ....+++.....++.++++|++||| ..+++||||++.||+++.++.+|++|||+++..........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~al~~lh---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~ 167 (256)
T cd08530 91 SKRKKKRKLIPEQEIWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHY 167 (256)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccc
Confidence 65 2345899999999999999999999 67899999999999999999999999999987654321100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++|+| | +|+.|.... +..+...... ... . .+.......
T Consensus 168 ~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~-----~~~~~~~~~~-~~~--------~------~~~~~~~~~ 227 (256)
T cd08530 168 MAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR-----SMQDLRYKVQ-RGK--------Y------PPIPPIYSQ 227 (256)
T ss_pred cCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHh-cCC--------C------CCCchhhCH
Confidence 00112256666 4 566554321 1111110000 000 0 011123345
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++||++.|+++
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 228 DLQNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHhc
Confidence 6788999999999999999999975
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=151.83 Aligned_cols=193 Identities=25% Similarity=0.337 Sum_probs=130.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... .+..+++|.+..... .....+..+++.+. .+++||+++++|.+++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~ 90 (254)
T cd06627 11 GAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQII 90 (254)
T ss_pred cCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHH
Confidence 357889998764 578899998865543 23345666665532 2678999999999888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---------- 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---------- 533 (639)
... ..++|..+..++.+++.|+.||| ..+++||||||+||+++.++.++++|||+++.........
T Consensus 91 ~~~-~~l~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~ 166 (254)
T cd06627 91 KKF-GPFPESLVAVYVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWM 166 (254)
T ss_pred Hhc-cCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhc
Confidence 643 46899999999999999999999 6689999999999999999999999999998765433210
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.+.||| | +|+.|..+. .......... ... ...+ +......
T Consensus 167 ~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~----~~~~~~~~~~-~~~-~~~~--------------~~~~~~~ 226 (254)
T cd06627 167 APEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL----NPMAALFRIV-QDD-HPPL--------------PEGISPE 226 (254)
T ss_pred CHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHh-ccC-CCCC--------------CCCCCHH
Confidence 00 0112356666 4 565554321 0111110000 000 0000 1112345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|+..+|++||+|.+++.
T Consensus 227 ~~~~i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 227 LKDFLMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred HHHHHHHHHhCChhhCcCHHHHhc
Confidence 667889999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=155.20 Aligned_cols=116 Identities=27% Similarity=0.361 Sum_probs=93.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.+|++.. .++..+++|.+..........+..|+..++ .+++||+++++|.+++..
T Consensus 31 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 110 (292)
T cd06657 31 GSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH 110 (292)
T ss_pred CCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhc
Confidence 45788999876 468899999886544434445555555432 268999999999887743
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
..+++.....++.+++.|++|+| ..+++||||||+||+++.++.++++|||++....
T Consensus 111 --~~~~~~~~~~~~~ql~~~l~~lH---~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~ 167 (292)
T cd06657 111 --TRMNEEQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 167 (292)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEcccccceecc
Confidence 34789999999999999999999 5689999999999999999999999999987554
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=162.72 Aligned_cols=207 Identities=25% Similarity=0.292 Sum_probs=125.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH----------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------------~Lv~ey~~~g 457 (639)
.++|.||++... .+..+|+|++..... ....|+.+++ .+|+||+++
T Consensus 77 G~fg~Vy~~~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~- 151 (440)
T PTZ00036 77 GSFGVVYEAICIDTSEKVAIKKVLQDPQ----YKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQ- 151 (440)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCc-
Confidence 468999999864 578999998753221 1122333321 157889885
Q ss_pred Cchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeeccccccccccccCCCc
Q 041082 458 SLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLLKEDQSF 533 (639)
Q Consensus 458 sL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~~~~~~~ 533 (639)
++.+++.. ....+++.....++.++++||+||| ..+|+||||||+||+++.+ +.+||+|||+|+.+.......
T Consensus 152 ~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~ 228 (440)
T PTZ00036 152 TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSV 228 (440)
T ss_pred cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcc
Confidence 66655532 3346888889999999999999999 6789999999999999965 479999999998664322110
Q ss_pred ----------cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC-Ccceeeec-------
Q 041082 534 ----------TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI-SVMEVVDV------- 580 (639)
Q Consensus 534 ----------~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~d~------- 580 (639)
+. ...+.++||| | ||+.|...... ...+...+...- +. ......++
T Consensus 229 ~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 307 (440)
T PTZ00036 229 SYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSS-VDQLVRIIQVLGTPTEDQLKEMNPNYADIKF 307 (440)
T ss_pred cCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhchhhhcccC
Confidence 00 0123368888 6 88877653110 011111111000 00 00000000
Q ss_pred -cccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 581 -NLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 581 -~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.... .....+......+.+++.+|++.+|++|||+.|+++
T Consensus 308 ~~~~~~~-l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~ 350 (440)
T PTZ00036 308 PDVKPKD-LKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA 350 (440)
T ss_pred CccCchh-HHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence 000000 000000112345778999999999999999999984
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=151.90 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=131.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++... ++..+++|++..... .....+..|++..+ .+|+||+++++|.+.+
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 90 (258)
T cd08215 11 GSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKI 90 (258)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHH
Confidence 457889988865 578999999876532 23344555554422 2688999999999988
Q ss_pred ccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------
Q 041082 464 YSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------ 534 (639)
Q Consensus 464 ~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------ 534 (639)
... ...+++.+...++.++++|++||| ..+++|+||+++||+++.++.++++|||++...........
T Consensus 91 ~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 167 (258)
T cd08215 91 KKQKKEGKPFPEEQILDWFVQLCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTP 167 (258)
T ss_pred HHhhccCCCcCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeee
Confidence 753 367899999999999999999999 56899999999999999999999999999986544321000
Q ss_pred ---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
....+.+.|+| | +|+.|.... ...+........... ..+...
T Consensus 168 ~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~---------------~~~~~~ 227 (258)
T cd08215 168 YYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE-----NLLELALKILKGQYP---------------PIPSQY 227 (258)
T ss_pred cccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC-----cHHHHHHHHhcCCCC---------------CCCCCC
Confidence 00112256666 4 555554321 111111111110000 001122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|+..+|++||++.|+++
T Consensus 228 ~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 228 SSELRNLVSSLLQKDPEERPSIAQILQ 254 (258)
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 345677888999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=150.54 Aligned_cols=199 Identities=25% Similarity=0.313 Sum_probs=132.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... ++..+++|++.... ......+..+++.++ .+++||+++++|.+.+.
T Consensus 12 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~ 91 (267)
T cd06610 12 GATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMK 91 (267)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHH
Confidence 457899999854 57889999886433 223455666665533 26899999999999886
Q ss_pred cC--CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 465 SS--NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 465 ~~--~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
.. ...+++.....++.+++.|++||| ..+++||||||+||++++++.++++|||++..+.......
T Consensus 92 ~~~~~~~~~~~~~~~~~~ql~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~ 168 (267)
T cd06610 92 SSYPRGGLDEAIIATVLKEVLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVG 168 (267)
T ss_pred HhcccCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccC
Confidence 52 245899999999999999999999 6789999999999999999999999999987665432110
Q ss_pred ------cc----c-ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 ------TQ----N-TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ------~~----~-~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. . ..+.++|+| | ||+.|...... ...+.++... . .+.+... ...
T Consensus 169 ~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-~~~~~~~~~~---~------~~~~~~~-----~~~ 233 (267)
T cd06610 169 TPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP-MKVLMLTLQN---D------PPSLETG-----ADY 233 (267)
T ss_pred ChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh-hhhHHHHhcC---C------CCCcCCc-----ccc
Confidence 00 0 122356666 5 56665542111 1111111110 0 0000000 000
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++..|++.+|++||++.++++
T Consensus 234 ~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 234 KKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred ccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 123345678889999999999999999976
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=155.06 Aligned_cols=116 Identities=24% Similarity=0.320 Sum_probs=91.2
Q ss_pred CCCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 406 FSGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 406 l~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+.+++.||.+.. ..|..+|+|.+..... ...+.+..|..+.+ .+|+||+++|++.++
T Consensus 10 ~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~ 89 (328)
T cd08226 10 FCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSL 89 (328)
T ss_pred ccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHH
Confidence 346778999875 4789999999875432 22345555555532 258899999999988
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
+... ...+++.....++.+++.||+||| +.+|+||||||+||+++.++.++++|||.+.
T Consensus 90 l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~ 149 (328)
T cd08226 90 LKTYFPEGMSEALIGNILFGALRGLNYLH---QNGYIHRNIKASHILISGDGLVSLSGLSHLY 149 (328)
T ss_pred HHhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEeCCCcEEEechHHHh
Confidence 8652 235889988999999999999999 6689999999999999999999999997543
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-16 Score=141.42 Aligned_cols=193 Identities=22% Similarity=0.255 Sum_probs=131.8
Q ss_pred CcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
-||.||.++.. ++..||+|++..+.. +...++.+|+++.. +|+.||.++|+++..|
T Consensus 34 kFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L 113 (281)
T KOG0580|consen 34 KFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDL 113 (281)
T ss_pred ccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHHH
Confidence 38999999875 568999999865432 22345555555521 3788999999999999
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-cc-------
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FT------- 534 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~------- 534 (639)
.+. ...++...-..+..++|.|+.|+| .+.|+||||||.|+|++.+++.|++|||-+......... .+
T Consensus 114 ~~~~~~~f~e~~~a~Yi~q~A~Al~y~h---~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~ 190 (281)
T KOG0580|consen 114 QEGRMKRFDEQRAATYIKQLANALLYCH---LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLP 190 (281)
T ss_pred HhcccccccccchhHHHHHHHHHHHHhc---cCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCC
Confidence 752 234677777789999999999999 889999999999999999999999999988654322211 00
Q ss_pred -cc----ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -QN----TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -~~----~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
.. .-....|+| | .|.+|...... +....+.. -.+..+|.-. ...+
T Consensus 191 pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~-~etYkrI~-------k~~~~~p~~i-------------s~~a 249 (281)
T KOG0580|consen 191 PEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH-SETYKRIR-------KVDLKFPSTI-------------SGGA 249 (281)
T ss_pred HhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh-HHHHHHHH-------HccccCCccc-------------ChhH
Confidence 00 011156667 5 67777654321 11111111 1223333221 2245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++..|...+|.+|.+..||+..
T Consensus 250 ~dlI~~ll~~~p~~r~~l~~v~~h 273 (281)
T KOG0580|consen 250 ADLISRLLVKNPIERLALTEVMDH 273 (281)
T ss_pred HHHHHHHhccCccccccHHHHhhh
Confidence 678899999999999999999863
|
|
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=151.89 Aligned_cols=201 Identities=21% Similarity=0.271 Sum_probs=128.5
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh----hhhhhhHHHHHHHHH---------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY----ERAFKSFDVACDMMK---------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~----~~~~~~f~~e~~~~~---------------------~Lv~ey~~~g 457 (639)
.++|.+|++... ++..+++|.+.... ......+..|+..+. .+|+||+++|
T Consensus 11 G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 90 (288)
T cd05583 11 GAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGG 90 (288)
T ss_pred CCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCC
Confidence 357889987643 46789999886432 112234445554421 2689999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc---
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT--- 534 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~--- 534 (639)
+|.+++... ..+++.....++.++++||+||| ..+++||||||+||+++.++.++++|||+++..........
T Consensus 91 ~L~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH---~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~ 166 (288)
T cd05583 91 ELFTHLYQR-EHFTESEVRVYIAEIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSF 166 (288)
T ss_pred cHHHHHhhc-CCcCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHeEECCCCCEEEEECccccccccccccccccc
Confidence 999888643 35788888999999999999999 67899999999999999999999999999876543221100
Q ss_pred ---------c----c--ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 ---------Q----N--TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 ---------~----~--~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. . ..+.++||| | ||+.|.... .......++....... ++
T Consensus 167 ~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~-~~~~~~~~~~~~~~~~------~~---------- 229 (288)
T cd05583 167 CGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVD-GEQNSQSEISRRILKS------KP---------- 229 (288)
T ss_pred cCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccC-cccchHHHHHHHHHcc------CC----------
Confidence 0 0 012245666 4 555554210 0000111111111100 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
..+......+.+++.+|++.+|++|||+.+|.+.|...
T Consensus 230 ~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~ 267 (288)
T cd05583 230 PFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP 267 (288)
T ss_pred CCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence 00111223466788899999999999999888776543
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-16 Score=172.95 Aligned_cols=197 Identities=18% Similarity=0.246 Sum_probs=128.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++... .+..+++|.+.... ......|..|+.+++ .+||||+++|+|.+
T Consensus 24 GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~ 103 (1021)
T PTZ00266 24 GRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSR 103 (1021)
T ss_pred CCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHH
Confidence 468999998864 46788999876432 222345555665532 26899999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccCC----CCeEeecCCCCceeecC-----------------Ccceee
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGYS----TPIIHCDLKLSNVLLGN-----------------NMVAHL 517 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~----~~i~h~dlk~~nill~~-----------------~~~~~i 517 (639)
++.. ....+++.....|+.+|+.||+|||.... .+|+||||||+|||++. ...+||
T Consensus 104 lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKL 183 (1021)
T PTZ00266 104 NIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKI 183 (1021)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEE
Confidence 8864 22458999999999999999999996432 46999999999999964 345899
Q ss_pred ccccccccccccCCCc----------ccc------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC
Q 041082 518 SDFGMAKLLLKEDQSF----------TQN------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI 572 (639)
Q Consensus 518 ~dfgla~~~~~~~~~~----------~~~------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~ 572 (639)
+|||+++.+....... +.. ..+.++||| | ||+.|... ......++......
T Consensus 184 sDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~----~~~~~qli~~lk~~ 259 (1021)
T PTZ00266 184 GDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHK----ANNFSQLISELKRG 259 (1021)
T ss_pred ccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCc----CCcHHHHHHHHhcC
Confidence 9999998764322110 000 012256676 5 66666532 11111221111000
Q ss_pred CcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 573 SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 573 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+. .......+.+++..|++.+|++||++.|++.
T Consensus 260 -------p~lp---------i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~ 294 (1021)
T PTZ00266 260 -------PDLP---------IKGKSKELNILIKNLLNLSAKERPSALQCLG 294 (1021)
T ss_pred -------CCCC---------cCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence 0000 0111235677889999999999999999984
|
|
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=154.88 Aligned_cols=117 Identities=26% Similarity=0.407 Sum_probs=88.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~~ 455 (639)
+++|.||++... ++..+|+|.+...... ....+..|+..++ .+|+||++
T Consensus 23 g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 102 (310)
T cd07865 23 GTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE 102 (310)
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC
Confidence 467889999864 5789999987543211 1122233444321 46778886
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+ ++.+.+......+++.+...++.+++.||+||| ..+++|+||||+||+++.++.+|++|||+++...
T Consensus 103 ~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~ 170 (310)
T cd07865 103 H-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGLARAFS 170 (310)
T ss_pred c-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCcEEECcCCCccccc
Confidence 4 777776654446899999999999999999999 5689999999999999999999999999997653
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=148.23 Aligned_cols=197 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh------hhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE------RAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~------~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.+|++.. .++..+++|.+..... .....+..|+..++ .+|+||+++++|
T Consensus 11 g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L 90 (268)
T cd06630 11 GAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSV 90 (268)
T ss_pred cCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcH
Confidence 45788998874 5678999998864331 12345555655533 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc-----
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF----- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~----- 533 (639)
.+++... ..+++.....++.+++.|++||| ..+++|+|||+.||+++.++ .++++|||+++.........
T Consensus 91 ~~~l~~~-~~~~~~~~~~~~~ql~~al~~LH---~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~ 166 (268)
T cd06630 91 SHLLSKY-GAFKEAVIINYTEQLLRGLSYLH---ENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQG 166 (268)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCcccc
Confidence 9988643 35789999999999999999999 66899999999999998775 69999999987664321100
Q ss_pred ----------cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 ----------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 ----------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
+. ...+.++||| | +|+.|.... .................. .
T Consensus 167 ~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~--------------~ 230 (268)
T cd06630 167 QLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE--KHSNHLALIFKIASATTA--------------P 230 (268)
T ss_pred ccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC--CCcchHHHHHHHhccCCC--------------C
Confidence 00 1112357777 5 676665321 111111111100000000 0
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+......+.+++.+|+..+|++||++.|++.
T Consensus 231 ~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 231 SIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred CCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence 111222345777899999999999999999875
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=153.31 Aligned_cols=118 Identities=22% Similarity=0.308 Sum_probs=93.3
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|.+..... .....+..+...+. .+|+||+++|+|.++
T Consensus 12 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~ 91 (332)
T cd05623 12 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTL 91 (332)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHH
Confidence 4578999998754 67899998854221 11223444444422 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+......+++.....++.+++.|++||| ..+|+||||||+||+++.++.+||+|||+++.+.
T Consensus 92 l~~~~~~l~~~~~~~~~~qi~~al~~lH---~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~ 153 (332)
T cd05623 92 LSKFEDRLPEDMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLM 153 (332)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEeecchheecc
Confidence 9764456889888999999999999999 6789999999999999999999999999987543
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=159.04 Aligned_cols=109 Identities=24% Similarity=0.278 Sum_probs=85.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.- ..+..+|+|.... ..+..|+.+++. +|+||+. ++|..++..
T Consensus 103 G~~g~V~~~~d~~~~~~vaiK~~~~------~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 175 (391)
T PHA03212 103 GAEGFAFACIDNKTCEHVVIKAGQR------GGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAA 175 (391)
T ss_pred CCCeEEEEEEECCCCCEEEEechhh------hhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHh
Confidence 56889999875 4578899997532 234455555432 4667774 577776653
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
...+++.....|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+..
T Consensus 176 -~~~l~~~~~~~i~~qi~~aL~ylH---~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~ 232 (391)
T PHA03212 176 -KRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGAACFP 232 (391)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChHhEEEcCCCCEEEEeCCccccc
Confidence 235889999999999999999999 668999999999999999999999999999754
|
|
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-15 Score=148.94 Aligned_cols=212 Identities=21% Similarity=0.222 Sum_probs=129.6
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh--hhhhhHHHHHHHH----------------------------HhhhhhcCC
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE--RAFKSFDVACDMM----------------------------KKLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~--~~~~~f~~e~~~~----------------------------~~Lv~ey~~ 455 (639)
+++|.+|++.... +..+++|.+..... .....+..++... ..+++||+.
T Consensus 10 g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~ 89 (287)
T cd07838 10 GAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD 89 (287)
T ss_pred cCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc
Confidence 3578999999764 88999999864321 1112233333221 225677876
Q ss_pred CCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--
Q 041082 456 HGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-- 532 (639)
Q Consensus 456 ~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-- 532 (639)
+++.+++... ...++|..+..++.++++||+||| ..+++|+|||++||+++.++.++++|||++.........
T Consensus 90 -~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~ 165 (287)
T cd07838 90 -QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTS 165 (287)
T ss_pred -cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhEEEccCCCEEEeccCcceeccCCccccc
Confidence 4787777542 235899999999999999999999 667999999999999999999999999999776432210
Q ss_pred --------cc----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC-CCcc---ee-eeccccccc
Q 041082 533 --------FT----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP-ISVM---EV-VDVNLLSME 586 (639)
Q Consensus 533 --------~~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~-~~~~---~~-~d~~l~~~~ 586 (639)
.+ ....+.++|+| | ||+.|.... .....+..+...... .... .. .........
T Consensus 166 ~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (287)
T cd07838 166 VVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT-SEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSY 244 (287)
T ss_pred ccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC-ChHHHHHHHHHHcCCCChHhcCCCcccchhhcccc
Confidence 00 01123378888 6 776665421 111112222211110 0000 00 000000000
Q ss_pred cc--cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DK--YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~--~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.. ......+-...+.+++.+|++.+|++||+|.|++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~ 283 (287)
T cd07838 245 TPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ 283 (287)
T ss_pred cccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence 00 00001122356678999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=149.46 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=90.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh-hhhHHHHHHH---------------------HHhhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA-FKSFDVACDM---------------------MKKLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~-~~~f~~e~~~---------------------~~~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+++|++....... ......++.. ...+|+||+ +|++.+.+
T Consensus 10 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~ 88 (283)
T cd07830 10 GTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLM 88 (283)
T ss_pred CCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHH
Confidence 467899999986 46789999876443211 0111112211 113688999 78998888
Q ss_pred ccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 464 YSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 464 ~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.... ..++|.++..++.+++.||+||| ..+++|+|||+.||+++.++.++++|||+++....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~ 151 (283)
T cd07830 89 KDRKGKPFSESVIRSIIYQILQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS 151 (283)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccC
Confidence 6533 46899999999999999999999 56899999999999999999999999999986653
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=156.70 Aligned_cols=211 Identities=19% Similarity=0.243 Sum_probs=131.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+++|++..... .....+..|+.+++ .+|+||+. |+|
T Consensus 16 g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l 94 (334)
T cd07855 16 GAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDL 94 (334)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhH
Confidence 457889988754 588999998864321 22233334444421 26788885 588
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 95 ~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~ 170 (334)
T cd07855 95 HHIIHSD-QPLTEEHIRYFLYQLLRGLKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTE 170 (334)
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCccccc
Confidence 8877643 34899999999999999999999 668999999999999999999999999998765322110
Q ss_pred --------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC---cc-eeeeccccc--
Q 041082 533 --------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS---VM-EVVDVNLLS-- 584 (639)
Q Consensus 533 --------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~---~~-~~~d~~l~~-- 584 (639)
.+. ...+.++||| | +|+.|..+. +.......+....... .. ++-+..+..
T Consensus 171 ~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 248 (334)
T cd07855 171 YVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGK--NYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYI 248 (334)
T ss_pred ccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCC--ChHHHHHHHHHHhCCChhHhhhhhchhhHHHHH
Confidence 000 1123378888 6 787776532 1111111111111110 00 000000000
Q ss_pred -cccc-cc----cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 585 -MEDK-YF----TTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 585 -~~~~-~~----~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.... .. +..+.....+.++..+|++.+|++||++.+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~ 294 (334)
T cd07855 249 QNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH 294 (334)
T ss_pred hhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 0000 00 0011234567889999999999999999998863
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=153.22 Aligned_cols=119 Identities=23% Similarity=0.272 Sum_probs=94.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..+...+. .+|+||+++|+|.++
T Consensus 12 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~ 91 (331)
T cd05624 12 GAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTL 91 (331)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence 468899999865 568899998864321 11223444444321 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||+|+| ..+|+||||||.||+++.++.+||+|||+++....
T Consensus 92 l~~~~~~l~~~~~~~~~~qi~~~L~~lH---~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 154 (331)
T cd05624 92 LSKFEDRLPEDMARFYIAEMVLAIHSIH---QLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ 154 (331)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCchHHEEEcCCCCEEEEeccceeeccC
Confidence 8764456888888999999999999999 77899999999999999999999999999976543
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=152.55 Aligned_cols=209 Identities=21% Similarity=0.236 Sum_probs=129.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHH--------------------------HhhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMM--------------------------KKLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~--------------------------~~Lv~ey~~~g 457 (639)
+++|.||++... ++..+++|........ ....+..|+..+ ..+|+||+++
T Consensus 12 g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~- 90 (295)
T cd07837 12 GTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS- 90 (295)
T ss_pred cCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCc-
Confidence 457899999865 5889999987654321 122333444331 1478899885
Q ss_pred CchhccccC----CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC
Q 041082 458 SLEKCLYSS----NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS 532 (639)
Q Consensus 458 sL~~~l~~~----~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~ 532 (639)
++.+++... ...+++.....++.+|+.||+||| ..+++|||||++||+++. ++.+|++|||+++........
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~ 167 (295)
T cd07837 91 DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKS 167 (295)
T ss_pred CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEecCCCeEEEeecccceecCCCccc
Confidence 787776542 235799999999999999999999 678999999999999998 899999999998754321110
Q ss_pred -----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHh--hC--CCC--cceeeecc
Q 041082 533 -----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND--LL--PIS--VMEVVDVN 581 (639)
Q Consensus 533 -----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~--~~--~~~--~~~~~d~~ 581 (639)
.+. ...+.++|+| | ||+.|... .....+.... .. +.. ..+..+..
T Consensus 168 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (295)
T cd07837 168 YTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPG----DSELQQLLHIFKLLGTPTEQVWPGVSKLR 243 (295)
T ss_pred cCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCC----CCHHHHHHHHHHHhCCCChhhCcchhhcc
Confidence 001 1123478998 6 78776642 1111111110 00 000 00000000
Q ss_pred ccccc-cccc----cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSME-DKYF----TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~-~~~~----~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... .... ...+.....+.+++.+|+..+|++||++.|++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 244 DWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT 290 (295)
T ss_pred chhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 00000 0000 000123355778999999999999999999875
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=152.41 Aligned_cols=122 Identities=27% Similarity=0.366 Sum_probs=96.5
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhhhhh---hhHHHHHHHH--------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYERAF---KSFDVACDMM--------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~~~~---~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~~ 462 (639)
..||.||.++ ..+...||+|+...+..+.. .++..|+..+ .-|||||+-+ |-.+.
T Consensus 37 GSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClG-SAsDl 115 (948)
T KOG0577|consen 37 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLG-SASDL 115 (948)
T ss_pred CccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhc-cHHHH
Confidence 4588999887 45678999999987765543 3333444332 2389999974 77777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~ 532 (639)
+.-..+++.......|+.|+..||+||| +...||||||+-||||.+.+.+|++|||-|.+..+..++
T Consensus 116 leVhkKplqEvEIAAi~~gaL~gLaYLH---S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsF 182 (948)
T KOG0577|consen 116 LEVHKKPLQEVEIAAITHGALQGLAYLH---SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSF 182 (948)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHH---HhhHHhhhccccceEecCCCeeeeccccchhhcCchhcc
Confidence 6545567888888999999999999999 788999999999999999999999999999887765543
|
|
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=151.12 Aligned_cols=116 Identities=28% Similarity=0.420 Sum_probs=87.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
+++|.+|++... ++..+++|.+..... .....+..+++.++ .+|+||++ +++.+++
T Consensus 13 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~ 91 (294)
T PLN00009 13 GTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHM 91 (294)
T ss_pred CCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHH
Confidence 457889999865 678999998865432 22234555655533 26899996 5777766
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeeccccccccc
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLL 526 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~ 526 (639)
... ...+++.....++.+++.||+||| ..+++||||||+||+++. +..+|++|||+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~ 153 (294)
T PLN00009 92 DSSPDFAKNPRLIKTYLYQILRGIAYCH---SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF 153 (294)
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCcceEEEECCCCEEEEccccccccc
Confidence 442 233577778889999999999999 668999999999999985 567899999999754
|
|
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=150.98 Aligned_cols=195 Identities=23% Similarity=0.293 Sum_probs=127.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.+|++... .+..+++|.+..... .....+..|++.++ .+|+||+. |++.+.
T Consensus 32 g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~ 110 (313)
T cd06633 32 GSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDL 110 (313)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHH
Confidence 467899999864 578999998864332 22234445554432 26889986 577777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------ccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FTQ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~~ 535 (639)
+......++|.++..++.+++.|++||| ..+++||||||+||+++.++.++++|||++......... .+.
T Consensus 111 l~~~~~~l~~~~~~~~~~qi~~al~~LH---~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE 187 (313)
T cd06633 111 LEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPE 187 (313)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChh
Confidence 6554556899999999999999999999 667999999999999999999999999998654322111 000
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | +|+.|.... ... ..+............. ......
T Consensus 188 ~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~--~~~---~~~~~~~~~~~~~~~~--------------~~~~~~ 248 (313)
T cd06633 188 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--NAM---SALYHIAQNDSPTLQS--------------NEWTDS 248 (313)
T ss_pred hccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--ChH---HHHHHHHhcCCCCCCc--------------cccCHH
Confidence 1122356777 5 666665421 111 1111111110000000 111234
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|.+||++.+++..
T Consensus 249 l~~li~~~l~~~P~~Rp~~~~~l~~ 273 (313)
T cd06633 249 FRGFVDYCLQKIPQERPASAELLRH 273 (313)
T ss_pred HHHHHHHHccCChhhCcCHHHHhcC
Confidence 6678889999999999999999863
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=150.02 Aligned_cols=117 Identities=27% Similarity=0.393 Sum_probs=91.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-----hhhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-----ERAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-----~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
+++|.||.+... .+..+++|.+.... ......+..|+..++ .+++||+++|+
T Consensus 13 g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~ 92 (265)
T cd06652 13 GAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGS 92 (265)
T ss_pred CCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCc
Confidence 467889998864 47899999875422 112234555555422 25789999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+++... ..+++....+++.+++.||+||| +.+++||||||+||+++.++.++++|||+++...
T Consensus 93 L~~~l~~~-~~~~~~~~~~~~~~l~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~ 157 (265)
T cd06652 93 IKDQLKSY-GALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQ 157 (265)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEecCCCCEEECcCccccccc
Confidence 99887643 34788888999999999999999 6679999999999999999999999999987543
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=166.22 Aligned_cols=118 Identities=25% Similarity=0.275 Sum_probs=82.6
Q ss_pred CCcCcceEEEecC-----CceeeeEEechhhhhhh---hhHHHH--------H-----------HHHHhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD-----GMKVAVKVFDLQYERAF---KSFDVA--------C-----------DMMKKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----g~~vavK~l~~~~~~~~---~~f~~e--------~-----------~~~~~Lv~ey~~~gsL 459 (639)
.+||.||++.... +..+|+|++........ ...... + .....+||||+++|+|
T Consensus 143 G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV~ey~~~gsL 222 (566)
T PLN03225 143 GAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDEYWLVWRYEGESTL 222 (566)
T ss_pred CCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCceEEEEEecCCCcH
Confidence 4689999999754 58899998753211000 000000 0 0013478999999999
Q ss_pred hhccccCCcc-------------------CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeecc
Q 041082 460 EKCLYSSNYI-------------------LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSD 519 (639)
Q Consensus 460 ~~~l~~~~~~-------------------l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~d 519 (639)
.+++...... ........|+.++++||+||| ..+|+||||||+|||++. ++.+||+|
T Consensus 223 ~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLKP~NILl~~~~~~~KL~D 299 (566)
T PLN03225 223 ADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVKPQNIIFSEGSGSFKIID 299 (566)
T ss_pred HHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCCHHHEEEeCCCCcEEEEe
Confidence 9887642211 112234578999999999999 678999999999999996 58999999
Q ss_pred cccccccc
Q 041082 520 FGMAKLLL 527 (639)
Q Consensus 520 fgla~~~~ 527 (639)
||+|+.+.
T Consensus 300 FGlA~~l~ 307 (566)
T PLN03225 300 LGAAADLR 307 (566)
T ss_pred CCCccccc
Confidence 99998653
|
|
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=156.10 Aligned_cols=114 Identities=27% Similarity=0.323 Sum_probs=85.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.- ..|..+|+|.+.... ......+..|+..++ .+|+||+++
T Consensus 32 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~- 110 (359)
T cd07876 32 GAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA- 110 (359)
T ss_pred CCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc-
Confidence 46889999875 457899999985432 122233444444422 357778764
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++...++ ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~l~~~~~---~~~~~~~~~~~~~qi~~~L~~LH---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~ 174 (359)
T cd07876 111 NLCQVIH---MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAC 174 (359)
T ss_pred CHHHHHh---ccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEecCCCccccc
Confidence 4545443 23778888899999999999999 6789999999999999999999999999997643
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=147.95 Aligned_cols=119 Identities=30% Similarity=0.423 Sum_probs=90.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.+||.||..+-. .++..|+|++.-...- .......|..++. +||.||+.+|.|..+
T Consensus 36 G~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~h 115 (357)
T KOG0598|consen 36 GSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYH 115 (357)
T ss_pred cCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHH
Confidence 468889887754 5789999998654321 1223334444422 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
|.++. .++.....-++..|+.||.||| +.+|||||+||+|||||.++.++++|||+++....+
T Consensus 116 L~~eg-~F~E~~arfYlaEi~lAL~~LH---~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~ 178 (357)
T KOG0598|consen 116 LQREG-RFSEDRARFYLAEIVLALGYLH---SKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKD 178 (357)
T ss_pred HHhcC-CcchhHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHeeecCCCcEEEeccccchhcccC
Confidence 97543 4666655557788999999999 889999999999999999999999999999965443
|
|
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=158.42 Aligned_cols=112 Identities=29% Similarity=0.292 Sum_probs=85.7
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+++|.+... .....|+.+++ .+++||+. +++.+++
T Consensus 103 G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l 176 (392)
T PHA03207 103 GSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYV 176 (392)
T ss_pred CCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHH
Confidence 457899988653 3467888887532 12234444432 25677775 5777777
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
. ....++|..+..|+.+++.||+||| ..+|+||||||+||+++.++.++|+|||+++.+..
T Consensus 177 ~-~~~~l~~~~~~~i~~ql~~aL~~LH---~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~ 237 (392)
T PHA03207 177 D-RSGPLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDA 237 (392)
T ss_pred H-hcCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEccCccccccCc
Confidence 3 3346899999999999999999999 66899999999999999999999999999976543
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=149.02 Aligned_cols=211 Identities=25% Similarity=0.249 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... .+..+++|.+.... ......+..++..++ .+|+||++ ++|.+++
T Consensus 10 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i 88 (282)
T cd07829 10 GTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYL 88 (282)
T ss_pred cCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHH
Confidence 457889998875 48899999887543 222233444444322 26789998 5899888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
......+++..+.+++.++++|++||| ..+|+||||+++||++++++.++++|||+++........
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~ 165 (282)
T cd07829 89 DKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYR 165 (282)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcC
Confidence 764356899999999999999999999 567999999999999999999999999998865433210
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC--C--c---cee--eeccccccccc-
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI--S--V---MEV--VDVNLLSMEDK- 588 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~--~--~---~~~--~d~~l~~~~~~- 588 (639)
.+. ...+.++||| | +|+.|....- .......+...... . . .+. .+.........
T Consensus 166 aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (282)
T cd07829 166 APEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS--EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKD 243 (282)
T ss_pred ChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccc
Confidence 000 0223478888 6 7766654210 01111111111000 0 0 000 00000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....+.....+.+++.+|++.+|++||++.+|+.
T Consensus 244 ~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 278 (282)
T cd07829 244 LEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK 278 (282)
T ss_pred hHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence 00000111346888999999999999999999975
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-15 Score=156.93 Aligned_cols=110 Identities=24% Similarity=0.269 Sum_probs=85.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH--------------------HhhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM--------------------KKLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+|+|...... ...|..++ ..+|+||+. |+|.+++..
T Consensus 77 G~~g~Vy~~~~~~~~~~valK~~~~~~------~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~ 149 (357)
T PHA03209 77 GSEGRVFVATKPGQPDPVVLKIGQKGT------TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTK 149 (357)
T ss_pred CCCeEEEEEEECCCCceEEEEeCCccc------cHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHh
Confidence 468899999875 45788888643221 11222221 236778874 688888765
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
....++|..+.+|+.++++||+||| ..+|+||||||.||+++.++.+||+|||+++..
T Consensus 150 ~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~ 207 (357)
T PHA03209 150 RSRPLPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP 207 (357)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence 5567899999999999999999999 668999999999999999999999999999754
|
|
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=155.59 Aligned_cols=210 Identities=20% Similarity=0.227 Sum_probs=129.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. ..|..+|+|.+.... ......+..|+..++ .+++||+++ ++
T Consensus 16 G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l 94 (336)
T cd07849 16 GAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELMET-DL 94 (336)
T ss_pred cCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhccc-CH
Confidence 45788999875 468899999885321 122233444444322 256777764 66
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.+.+.. ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 95 ~~~~~~--~~l~~~~~~~i~~ql~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~ 169 (336)
T cd07849 95 YKLIKT--QHLSNDHIQYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEY 169 (336)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCc
Confidence 666543 35889999999999999999999 678999999999999999999999999998765422110
Q ss_pred -------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC----cceeeecccccccc
Q 041082 533 -------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLLSMED 587 (639)
Q Consensus 533 -------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~~~~~ 587 (639)
.+. ...+.++||| | ||+.|..+. +......++....... ...+.+........
T Consensus 170 ~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (336)
T cd07849 170 VATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGK--DYLHQLNLILGVLGTPSQEDLNCIISLRARNYIK 247 (336)
T ss_pred CcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHh
Confidence 010 1123378998 6 888776431 1111111111111111 11111111000000
Q ss_pred ---ccccc-----hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 588 ---KYFTT-----KKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 588 ---~~~~~-----~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..... .+.....+.+++.+|++.+|++||++.|+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h 292 (336)
T cd07849 248 SLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH 292 (336)
T ss_pred hcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 00000 01123457889999999999999999999875
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=150.96 Aligned_cols=117 Identities=29% Similarity=0.408 Sum_probs=90.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gs 458 (639)
.++|.+|++.. ..+..+++|.+...... ...+..+.... ..+++||+++|+
T Consensus 27 g~~~~v~~~~~~~~~~~~a~K~~~~~~~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~ 105 (282)
T cd06636 27 GTYGQVYKGRHVKTGQLAAIKVMDVTEDE-EEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGS 105 (282)
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEecChHH-HHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCc
Confidence 46888999886 45788999987654322 22333333321 137899999999
Q ss_pred chhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+++.. ....+++..+..++.+++.|++||| ..+++|||||++||++++++.++++|||+++...
T Consensus 106 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~ 172 (282)
T cd06636 106 VTDLVKNTKGNALKEDWIAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD 172 (282)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCcchhhhh
Confidence 9988864 2345788888999999999999999 6689999999999999999999999999987543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=151.29 Aligned_cols=199 Identities=21% Similarity=0.230 Sum_probs=128.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHH---------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMM---------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+...... ....+..+.... ..+|+||+++|+|.+
T Consensus 7 g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 86 (260)
T cd05611 7 GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCAS 86 (260)
T ss_pred CCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHH
Confidence 457899999764 5789999988643211 112222222221 137899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT 534 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~ 534 (639)
++... ..+++....+++.+++.||.||| ..+++||||+|+||+++.++.++++|||+++........ .+
T Consensus 87 ~l~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~~p 162 (260)
T cd05611 87 LIKTL-GGLPEDWAKQYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAP 162 (260)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCcEEEeecccceeccccccCCCCcCccCh
Confidence 88643 35788888999999999999999 678999999999999999999999999998764322110 00
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | ||..|..... -.+........... ..+ .....+...+.
T Consensus 163 e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~--~~~----------~~~~~~~~~~~ 225 (260)
T cd05611 163 ETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET-----PDAVFDNILSRRIN--WPE----------EVKEFCSPEAV 225 (260)
T ss_pred hhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHhcccC--CCC----------cccccCCHHHH
Confidence 01123467888 6 7777764311 11111111000000 000 00112234577
Q ss_pred HHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+++.+|++.+|++||++.++.+.+.
T Consensus 226 ~~i~~~l~~~p~~R~~~~~~~~~l~ 250 (260)
T cd05611 226 DLINRLLCMDPAKRLGANGYQEIKS 250 (260)
T ss_pred HHHHHHccCCHHHccCCCcHHHHHc
Confidence 8899999999999998877655443
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=153.03 Aligned_cols=211 Identities=22% Similarity=0.256 Sum_probs=132.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.+|++... ++..+++|.+.... ......+..|++.++ .+++||++++.+..+.
T Consensus 12 g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~ 91 (288)
T cd07833 12 GAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLE 91 (288)
T ss_pred cCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHH
Confidence 457889998875 47899999876532 222345556665533 2688999987666554
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC-C----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ-S---------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~-~---------- 532 (639)
. ....+++.....++.++++|++||| ..+++|||||++||++++++.+|++|||++........ .
T Consensus 92 ~-~~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~ 167 (288)
T cd07833 92 A-SPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWY 167 (288)
T ss_pred h-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCC
Confidence 3 3345889999999999999999999 66899999999999999999999999999887654321 0
Q ss_pred -ccc----c-ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCcceee--eccccc----cccc
Q 041082 533 -FTQ----N-TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISVMEVV--DVNLLS----MEDK 588 (639)
Q Consensus 533 -~~~----~-~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~~~~~--d~~l~~----~~~~ 588 (639)
.+. . ..+.++||| | +|+.|.... ............. +......+ ++...+ ....
T Consensus 168 ~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (288)
T cd07833 168 RAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD--SDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQ 245 (288)
T ss_pred cCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCC
Confidence 000 1 223478888 6 777666421 1111000000000 00000000 000000 0000
Q ss_pred ----cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 ----YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ----~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+..+...+.+++.+|+..+|++||+|.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 284 (288)
T cd07833 246 PESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ 284 (288)
T ss_pred cHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence 00001122467889999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=150.64 Aligned_cols=117 Identities=24% Similarity=0.305 Sum_probs=89.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHH---HH--------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACD---MM--------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~---~~--------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+...... ....+..+.. .. ..+|+||+++|+|
T Consensus 5 g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L 84 (278)
T cd05606 5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL 84 (278)
T ss_pred CCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcH
Confidence 457899988754 5789999988643211 1111111111 11 1268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
..++.. ...++|..+..++.++++|++||| ..+|+||||||+||+++.++.++++|||+++...
T Consensus 85 ~~~l~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~ 148 (278)
T cd05606 85 HYHLSQ-HGVFSEAEMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 148 (278)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCCCCHHHEEECCCCCEEEccCcCccccC
Confidence 888754 346899999999999999999999 6789999999999999999999999999987553
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-15 Score=157.84 Aligned_cols=117 Identities=24% Similarity=0.368 Sum_probs=93.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|..++. .+|+||+++|+|.++
T Consensus 12 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~ 91 (363)
T cd05628 12 GAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTL 91 (363)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHH
Confidence 468899998754 578999999865321 22234444554432 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... ..+++.....++.+++.||+||| +.+|+||||||+||+++.++.+||+|||+++.+.
T Consensus 92 l~~~-~~l~~~~~~~~~~qi~~aL~~lH---~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~ 152 (363)
T cd05628 92 LMKK-DTLTEEETQFYIAETVLAIDSIH---QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK 152 (363)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence 8653 45889999999999999999999 6789999999999999999999999999987653
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=148.59 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=133.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++... ++..+++|++..... .....+..+++..+ .+++||+++++|.+
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~ 90 (260)
T cd06606 11 GSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSS 90 (260)
T ss_pred cCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHH
Confidence 467899999876 688999998865542 23345555555422 26889999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC---Cc-----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ---SF----- 533 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~---~~----- 533 (639)
++.... .++|..+..++.++++|++||| ..+++|+|++|+||+++.++.++++|||.+........ ..
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~l~~~l~~lh---~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 166 (260)
T cd06606 91 LLKKFG-KLPEPVIRKYTRQILEGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGT 166 (260)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCC
Confidence 886533 7899999999999999999999 57899999999999999999999999999887654432 00
Q ss_pred -----cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 -----TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 -----~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+. ...+.+.||| | +|+.|..... ....-+.... .... ....+..
T Consensus 167 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~--------~~~~------~~~~~~~ 228 (260)
T cd06606 167 PYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG----NPMAALYKIG--------SSGE------PPEIPEH 228 (260)
T ss_pred ccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----chHHHHHhcc--------ccCC------CcCCCcc
Confidence 00 0122356777 5 5666654211 0000000000 0000 0001112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++||++.|++.
T Consensus 229 ~~~~l~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 229 LSEEAKDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred cCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence 2456778888999999999999999985
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=150.16 Aligned_cols=212 Identities=21% Similarity=0.253 Sum_probs=130.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.+|++... +|..+++|.+...... ....+..|+..++ .+|+||+++ ++.+++.
T Consensus 11 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~ 89 (284)
T cd07836 11 GTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMD 89 (284)
T ss_pred CCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHH
Confidence 457889999875 5789999988754322 2234444554422 378999985 7877765
Q ss_pred cCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 465 SSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 465 ~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
... ..+++.+..+++.+++.||+||| ..+++||||||+||+++++++++++|||+++........
T Consensus 90 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y 166 (284)
T cd07836 90 THGVRGALDPNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWY 166 (284)
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccc
Confidence 422 45899999999999999999999 667999999999999999999999999998754321100
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC--cceeee-----cccccccc-c
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS--VMEVVD-----VNLLSMED-K 588 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~d-----~~l~~~~~-~ 588 (639)
.+. ...+.++|+| | ||+.|..+....+ .+..-.+.. .+.. .....+ ........ .
T Consensus 167 ~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (284)
T cd07836 167 RAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED-QLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQD 245 (284)
T ss_pred cChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHH
Confidence 000 1113368888 6 7887765321110 000000000 0000 000000 00000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....+.....+.++...|++.+|++||++.||++
T Consensus 246 ~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~ 280 (284)
T cd07836 246 LQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ 280 (284)
T ss_pred HHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 00001122345678899999999999999999875
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-15 Score=151.77 Aligned_cols=212 Identities=24% Similarity=0.265 Sum_probs=130.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh--hhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA--FKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~--~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .|..+|+|.+....... ...+..|+..++ .+|+||+++ +|.+
T Consensus 18 g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~ 96 (309)
T cd07845 18 GTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLAS 96 (309)
T ss_pred cCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCCC-CHHH
Confidence 457889999864 58899999986543211 112233443321 367888864 7777
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--------- 532 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--------- 532 (639)
++......++|.++..++.++++|++||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 97 ~l~~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~ 173 (309)
T cd07845 97 LLDNMPTPFSESQVKCLMLQLLRGLQYLH---ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLW 173 (309)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCccccccc
Confidence 77654456899999999999999999999 667999999999999999999999999999876432111
Q ss_pred --ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCccee---e-eccccccc------
Q 041082 533 --FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEV---V-DVNLLSME------ 586 (639)
Q Consensus 533 --~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~---~-d~~l~~~~------ 586 (639)
.+. ...+.++||| | +|+.|.... .......-+.........+. + +.......
T Consensus 174 y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (309)
T cd07845 174 YRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK--SEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQP 251 (309)
T ss_pred ccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCC
Confidence 000 1123478888 6 787776431 11111111111111100000 0 00000000
Q ss_pred -cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 587 -DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 587 -~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.............+.+++..|++.+|++|||+.||+..
T Consensus 252 ~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h 290 (309)
T cd07845 252 YNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES 290 (309)
T ss_pred CCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence 00000001113456778999999999999999999853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=147.94 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=130.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.+++.+|++... .+..+++|.+..... ...+.+..|++.++ .+|+||+++++|.++
T Consensus 11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 90 (258)
T cd05578 11 GAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYH 90 (258)
T ss_pred CCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHH
Confidence 467889999875 578999998865432 23445555555432 267899999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+... ..+++.+...++.++++||+||| ..+++|+||||+||++++++.++++|||++..........
T Consensus 91 l~~~-~~l~~~~~~~~~~~i~~~l~~lh---~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~ 166 (258)
T cd05578 91 LSQK-VKFSEEQVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYM 166 (258)
T ss_pred HHhc-CCcCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhc
Confidence 8653 46889999999999999999999 6679999999999999999999999999987654331110
Q ss_pred -cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 534 -TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 534 -~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
+. ...+.++|+| | +|+.|....-.. ..++........ .. ..+......
T Consensus 167 ~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~-~~--------------~~~~~~~~~ 228 (258)
T cd05578 167 APEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT---IRDQIRAKQETA-DV--------------LYPATWSTE 228 (258)
T ss_pred CHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc---HHHHHHHHhccc-cc--------------cCcccCcHH
Confidence 00 1123366776 5 666665421110 111211111100 00 011122356
Q ss_pred HHHHHhhccCCCCCCCCCH--HHHH
Q 041082 600 VFNLAMECTAESPKQRINA--KESV 622 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m--~~v~ 622 (639)
+.+++.+|++.+|++||++ .|+.
T Consensus 229 ~~~~i~~~l~~~p~~R~~~~~~~l~ 253 (258)
T cd05578 229 AIDAINKLLERDPQKRLGDNLKDLK 253 (258)
T ss_pred HHHHHHHHccCChhHcCCccHHHHh
Confidence 6788899999999999999 5543
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=152.81 Aligned_cols=211 Identities=23% Similarity=0.247 Sum_probs=130.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH------------------------------hhhhhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK------------------------------KLVLEY 453 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~------------------------------~Lv~ey 453 (639)
.++|.||++... +|..+++|.+...... ....+..|+.+++ .+|+||
T Consensus 18 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~ 97 (302)
T cd07864 18 GTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEY 97 (302)
T ss_pred cCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcc
Confidence 357899999875 5789999998654321 1123334443321 267888
Q ss_pred CCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 454 MPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 454 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
+++ ++...+......++|.....++.+++.||+||| ..+|+|||||++||++++++.+|++|||+++........
T Consensus 98 ~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~ 173 (302)
T cd07864 98 MDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRP 173 (302)
T ss_pred cCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcccc
Confidence 875 666666544446899999999999999999999 668999999999999999999999999999865432210
Q ss_pred -----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh---CCCCccee-------
Q 041082 533 -----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL---LPISVMEV------- 577 (639)
Q Consensus 533 -----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~---~~~~~~~~------- 577 (639)
.+. ...+.++||| | +|+.|....- ....+....... .+....++
T Consensus 174 ~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (302)
T cd07864 174 YTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ-ELAQLELISRLCGSPCPAVWPDVIKLPYFN 252 (302)
T ss_pred cccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCChhhccccccccccc
Confidence 000 1123468888 6 7877765311 101111111100 00000000
Q ss_pred -eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 578 -VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 578 -~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.|+.-.... ...+........+.+++.+|++.+|++||++.+|+.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 298 (302)
T cd07864 253 TMKPKKQYRR-RLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN 298 (302)
T ss_pred cccccccccc-chhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 010000000 000000112356788999999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-15 Score=156.22 Aligned_cols=211 Identities=19% Similarity=0.244 Sum_probs=130.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHH-------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMM-------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++.- ..+..+++|.+.... ......+..|+..+ ..+|+||+. ++
T Consensus 16 G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~ 94 (337)
T cd07858 16 GAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TD 94 (337)
T ss_pred CCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CC
Confidence 45788998875 467899999876432 11122233333331 146788886 57
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
|.+++... ..+++.....++.+++.||.||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 95 L~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~ 170 (337)
T cd07858 95 LHQIIRSS-QTLSDDHCQYFLYQLLRGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVV 170 (337)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCccccccccc
Confidence 87777542 45889999999999999999999 668999999999999999999999999999865432110
Q ss_pred -----ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC----CCcceeeecccccc----
Q 041082 533 -----FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP----ISVMEVVDVNLLSM---- 585 (639)
Q Consensus 533 -----~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~----~~~~~~~d~~l~~~---- 585 (639)
.+. ...+.++|+| | +|+.|.... +............. +....+.++.....
T Consensus 171 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T cd07858 171 TRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK--DYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSL 248 (337)
T ss_pred ccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC--ChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhc
Confidence 000 1123478998 7 787776421 10000000000000 00101111110000
Q ss_pred --c--cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 --E--DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 --~--~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. .......+.+...+.+++.+|++.+|++||++.|+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h 291 (337)
T cd07858 249 PYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAH 291 (337)
T ss_pred CcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence 0 00000011234567889999999999999999999976
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=153.56 Aligned_cols=116 Identities=27% Similarity=0.319 Sum_probs=86.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
+++|.||++.. ..+..+|+|.+..... .....+..|+..++. ++++++ ++
T Consensus 26 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 104 (343)
T cd07878 26 GAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GA 104 (343)
T ss_pred CCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CC
Confidence 56889999975 4678999998864321 122234344444332 233443 55
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+++.. ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 105 ~l~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~ 170 (343)
T cd07878 105 DLNNIVKC--QKLSDEHVQFLIYQLLRGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD 170 (343)
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCChhhEEECCCCCEEEcCCccceecCC
Confidence 67666542 35889999999999999999999 67899999999999999999999999999987543
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-16 Score=159.95 Aligned_cols=203 Identities=22% Similarity=0.309 Sum_probs=127.4
Q ss_pred cCcceEEEec-CCceeeeEEechhh----hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchh
Q 041082 409 FGSIYKARIQ-DGMKVAVKVFDLQY----ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 409 ~g~vy~~~l~-~g~~vavK~l~~~~----~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~ 461 (639)
|-+||+|.-. .|..||--.+.... .+....|..|+.+++. +|.|.|..|+|..
T Consensus 53 fKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~ 132 (632)
T KOG0584|consen 53 FKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLRE 132 (632)
T ss_pred ceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecccCCcHHH
Confidence 4468887643 46666543333221 2334677788888653 5789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCcccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~~~~~~~~ 540 (639)
+..+.. .++.....++|.+|.+||.|||.. .|||+|||||..||.+.+ -|++||+|.|||.+....... ...+|.
T Consensus 133 Y~kk~~-~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~ak--svIGTP 208 (632)
T KOG0584|consen 133 YRKKHR-RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAK--SVIGTP 208 (632)
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccccc--eeccCc
Confidence 886532 366777889999999999999964 899999999999999986 589999999999987544322 223333
Q ss_pred ---ccccccCCCCCCCccCCCccchHHHHHhhCCCC----cceeeeccccccccccccchHHH-----HHHHHHHHhhcc
Q 041082 541 ---HHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLLSMEDKYFTTKKQC-----LSFVFNLAMECT 608 (639)
Q Consensus 541 ---~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~-----~~~~~~l~~~C~ 608 (639)
+..+|-.+.-..-|+|+.||.+.+.|+..+|.. ...+.-.-+.| .++++ -..+-+++-.|+
T Consensus 209 EFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SG-------iKP~sl~kV~dPevr~fIekCl 281 (632)
T KOG0584|consen 209 EFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSG-------IKPAALSKVKDPEVREFIEKCL 281 (632)
T ss_pred cccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcC-------CCHHHhhccCCHHHHHHHHHHh
Confidence 111220000112233455555555555555432 01110000000 00111 123556778999
Q ss_pred CCCCCCCCCHHHHHH
Q 041082 609 AESPKQRINAKESVT 623 (639)
Q Consensus 609 ~~~p~~RP~m~~v~~ 623 (639)
.. .++|||+.|.+.
T Consensus 282 ~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 282 AT-KSERLSAKELLK 295 (632)
T ss_pred cC-chhccCHHHHhh
Confidence 98 899999999875
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=146.61 Aligned_cols=117 Identities=29% Similarity=0.395 Sum_probs=90.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEec--hhhhhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFD--LQYERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~--~~~~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
..+|.|..+.- ..|..||+|++. +......+..-+|+..++ ++|+|+|+ .+
T Consensus 33 GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tD 111 (359)
T KOG0660|consen 33 GAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TD 111 (359)
T ss_pred cceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHh-hH
Confidence 34677777664 568999999986 443333344445555533 26788884 47
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|.+.++. ...|+-....-+..|+.+||.|+| +.+|+|||+||+|++++.+...||+|||+||...+
T Consensus 112 L~~iik~-~~~L~d~H~q~f~YQiLrgLKyiH---SAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~ 177 (359)
T KOG0660|consen 112 LHQIIKS-QQDLTDDHAQYFLYQILRGLKYIH---SANVIHRDLKPSNLLLNADCDLKICDFGLARYLDK 177 (359)
T ss_pred HHHHHHc-CccccHHHHHHHHHHHHHhcchhh---cccccccccchhheeeccCCCEEeccccceeeccc
Confidence 8777764 334778878888999999999999 77899999999999999999999999999998854
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=148.95 Aligned_cols=118 Identities=27% Similarity=0.372 Sum_probs=91.9
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhhh----hhhhhHHHHHHHHH---------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQYE----RAFKSFDVACDMMK---------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~~----~~~~~f~~e~~~~~---------------------~Lv~ey~~~g 457 (639)
.++|.+|.+.. .+|..+|+|++..... .....+..|+..++ .+|+||+++|
T Consensus 11 G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 90 (290)
T cd05613 11 GAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGG 90 (290)
T ss_pred CCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCC
Confidence 45788998775 3678899999864321 11233444444421 3789999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+++... ..+++.....++.++++||+||| ..+++||||||+||+++.++.+|++|||+++....
T Consensus 91 ~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~ 157 (290)
T cd05613 91 ELFTHLSQR-ERFKEQEVQIYSGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE 157 (290)
T ss_pred cHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence 999988643 35788888889999999999999 67899999999999999999999999999986543
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=147.05 Aligned_cols=207 Identities=20% Similarity=0.264 Sum_probs=131.0
Q ss_pred cCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
+|.|-++.- ..|..||||.+..+... ..-.+.+|+++|.. +||||..+|.|++++.
T Consensus 66 YGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiS 145 (668)
T KOG0611|consen 66 YGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYIS 145 (668)
T ss_pred ccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHH
Confidence 566666664 46899999988765433 23345667777543 6899999999999997
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccc--cc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC--HH 542 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~--~~ 542 (639)
+. ..|+.....+++.||..|+.|.| ..+|+|||||..|||||.+.++||+|||++.++..+..-.+...+.. ..
T Consensus 146 er-~~LsErEaRhfFRQIvSAVhYCH---knrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASP 221 (668)
T KOG0611|consen 146 ER-GSLSEREARHFFRQIVSAVHYCH---KNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASP 221 (668)
T ss_pred Hh-ccccHHHHHHHHHHHHHHHHHHh---hccceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCc
Confidence 53 35778778899999999999999 88999999999999999999999999999988766543222111100 01
Q ss_pred ccc-cCC-CCCCCccCCCccchHHHHHhhCCCCcce--eeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCH
Q 041082 543 RIY-GTR-RNPQMNFFSGEMTLKSWVNDLLPISVME--VVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 543 dvy-Gtg-~~p~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m 618 (639)
.+. |+. +.|--|.|+-|+-|...|....|.+..+ .+=..|.. ..++. ++.......|+...+..+|++|-|.
T Consensus 222 EIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~-GaYrE---P~~PSdA~gLIRwmLmVNP~RRATi 297 (668)
T KOG0611|consen 222 EIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISR-GAYRE---PETPSDASGLIRWMLMVNPERRATI 297 (668)
T ss_pred cccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhc-ccccC---CCCCchHHHHHHHHHhcCcccchhH
Confidence 111 210 1122234444555544454444433111 00011110 00000 1112223346667778899999998
Q ss_pred HHHHH
Q 041082 619 KESVT 623 (639)
Q Consensus 619 ~~v~~ 623 (639)
.+|..
T Consensus 298 eDiAs 302 (668)
T KOG0611|consen 298 EDIAS 302 (668)
T ss_pred HHHhh
Confidence 88864
|
|
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-15 Score=158.73 Aligned_cols=111 Identities=26% Similarity=0.280 Sum_probs=88.0
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..|++|.... ..+..|+++++ .+|++|+. |+|..++..
T Consensus 180 G~~G~Vy~a~~~~~~~~vavK~~~~------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 252 (461)
T PHA03211 180 GSEGCVFESSHPDYPQRVVVKAGWY------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGA 252 (461)
T ss_pred CCCeEEEEEEECCCCCEEEEecccc------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHh
Confidence 4688999998754 67899996432 23344555533 25677774 688887765
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
....++|.++..|+.++++||+||| ..+|+|||||++|||++.++.+||+|||+++.+.
T Consensus 253 ~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~ 311 (461)
T PHA03211 253 RLRPLGLAQVTAVARQLLSAIDYIH---GEGIIHRDIKTENVLVNGPEDICLGDFGAACFAR 311 (461)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECcCCHHHEEECCCCCEEEcccCCceecc
Confidence 4456999999999999999999999 6689999999999999999999999999998654
|
|
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-15 Score=156.52 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=92.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|++.... ......+..|..+++ .+|+||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~ 91 (381)
T cd05626 12 GAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSL 91 (381)
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHH
Confidence 56899999975 457899999986532 122344556665533 368999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++.+
T Consensus 92 l~~~-~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~ 151 (381)
T cd05626 92 LIRM-EVFPEVLARFYIAELTLAIESVH---KMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGF 151 (381)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence 8643 35788888889999999999999 678999999999999999999999999998643
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=150.03 Aligned_cols=117 Identities=24% Similarity=0.382 Sum_probs=87.7
Q ss_pred CCcCcceEEEecC---CceeeeEEechhh---hhhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD---GMKVAVKVFDLQY---ERAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~---g~~vavK~l~~~~---~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||++.... +..+|+|.+.... ......+..++.+++ .+|+||+++ +
T Consensus 11 g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~ 89 (316)
T cd07842 11 GTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEH-D 89 (316)
T ss_pred CCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCCc-C
Confidence 4578899998754 7899999987532 222233444444422 367888875 5
Q ss_pred chhcccc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC----Ccceeecccccccccc
Q 041082 459 LEKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN----NMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~----~~~~~i~dfgla~~~~ 527 (639)
+.+.+.. ....++......|+.+++.|++||| ..+++||||||+||+++. ++.+|++|||+++...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~ 163 (316)
T cd07842 90 LWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN 163 (316)
T ss_pred HHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccC
Confidence 6555432 1225788888999999999999999 667999999999999999 9999999999988654
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=153.76 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=85.1
Q ss_pred CCcCcceEEEecC---CceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD---GMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~---g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++...+ +..+|+|.+.... ....+..|+..++ .+|+||+++ ++.+
T Consensus 12 G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~ 88 (317)
T cd07867 12 GTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWH 88 (317)
T ss_pred CCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHH
Confidence 4689999998653 4689999875432 1223445555433 256788765 6655
Q ss_pred cccc--------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeecccccccccc
Q 041082 462 CLYS--------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 462 ~l~~--------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~ 527 (639)
.+.. ....+++.....++.+++.||+||| +.+|+||||||+||++ +.++.+||+|||+++...
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~ 163 (317)
T cd07867 89 IIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred HHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccC
Confidence 5431 1224788889999999999999999 6789999999999999 456789999999998764
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-15 Score=152.84 Aligned_cols=217 Identities=22% Similarity=0.251 Sum_probs=133.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
+++|.+|++... .+..+++|.+.... ....+.+..++..++ .++++|++ ++
T Consensus 11 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~ 89 (330)
T cd07834 11 GAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TD 89 (330)
T ss_pred CCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hh
Confidence 457889999865 47899999876432 222334444443322 35678887 47
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC-----C-
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ-----S- 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~-----~- 532 (639)
|.+++... ..+++..+..++.+++.||+||| ..+|+||||||.||+++.++.++++|||++........ .
T Consensus 90 l~~~l~~~-~~l~~~~~~~i~~~l~~~l~~LH---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~ 165 (330)
T cd07834 90 LHKVIKSP-QPLTDDHIQYFLYQILRGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTE 165 (330)
T ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccc
Confidence 87777643 36899999999999999999999 66899999999999999999999999999987654321 0
Q ss_pred --------ccc----c-ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC------------Ccceee
Q 041082 533 --------FTQ----N-TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI------------SVMEVV 578 (639)
Q Consensus 533 --------~~~----~-~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~------------~~~~~~ 578 (639)
.+. . ..+.++|+| | ||+.|....- .......+...... ...+.+
T Consensus 166 ~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
T cd07834 166 YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD--YIDQLNLIVEVLGTPSEEDLKFITSEKARNYL 243 (330)
T ss_pred cccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHhcCCCChhHhhhccccchhhHH
Confidence 000 0 223368888 6 7877764321 11111111111100 000000
Q ss_pred eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH--HHHhHH
Q 041082 579 DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR--LLKIRD 630 (639)
Q Consensus 579 d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~--l~~~~~ 630 (639)
...-............+....+.+++.+|++.+|++||++.+++.. ++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~ 297 (330)
T cd07834 244 KSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD 297 (330)
T ss_pred hhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence 0000000000000001123467889999999999999999999974 555443
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-15 Score=155.65 Aligned_cols=116 Identities=28% Similarity=0.312 Sum_probs=92.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..+...++ .+|+||+++|+|.++
T Consensus 54 G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~ 133 (370)
T cd05621 54 GAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNL 133 (370)
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence 468899998865 478899999864321 12233445555432 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... .++......++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+...
T Consensus 134 l~~~--~~~~~~~~~~~~qil~aL~~LH---~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~ 193 (370)
T cd05621 134 MSNY--DVPEKWAKFYTAEVVLALDAIH---SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMD 193 (370)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCHHHEEECCCCCEEEEecccceecc
Confidence 8643 4778888899999999999999 6789999999999999999999999999998764
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-15 Score=157.16 Aligned_cols=117 Identities=24% Similarity=0.353 Sum_probs=94.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++.... ......+..|..+++ .+|+||+++|+|.++
T Consensus 12 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~ 91 (364)
T cd05599 12 GAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTL 91 (364)
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHH
Confidence 468899998864 57899999987542 122334455555533 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.++++|||+++.+.
T Consensus 92 l~~~-~~l~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 152 (364)
T cd05599 92 LMKK-DTFTEEETRFYIAETILAIDSIH---KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK 152 (364)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence 8653 35888889999999999999999 6789999999999999999999999999987653
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-15 Score=147.23 Aligned_cols=118 Identities=29% Similarity=0.385 Sum_probs=94.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++... .+..+++|.+..... ...+.+..+....+ .+++||+++|+|.++
T Consensus 4 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 83 (262)
T cd05572 4 GGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTI 83 (262)
T ss_pred CCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHH
Confidence 357889999875 378999998864332 22344555555432 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+... ..+++..+..++.+++.||+|+| +.+++|+|||++||+++.++.++++|||+++....
T Consensus 84 l~~~-~~l~~~~~~~~~~~i~~~l~~lH---~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~ 145 (262)
T cd05572 84 LRDR-GLFDEYTARFYIACVVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS 145 (262)
T ss_pred Hhhc-CCCCHHHHHHHHHHHHHHHHHHh---hCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc
Confidence 8753 34788999999999999999999 67899999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=151.10 Aligned_cols=116 Identities=24% Similarity=0.378 Sum_probs=92.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+.... ......+..|..++. .+|+||+++|+|.++
T Consensus 12 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~ 91 (360)
T cd05627 12 GAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTL 91 (360)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHH
Confidence 468899998764 57899999986432 122234444544422 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.++++|||+++.+
T Consensus 92 l~~~-~~l~~~~~~~~~~qi~~~L~~lH---~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~ 151 (360)
T cd05627 92 LMKK-DTLSEEATQFYIAETVLAIDAIH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGL 151 (360)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEccCCCHHHEEECCCCCEEEeeccCCccc
Confidence 8643 35788888999999999999999 778999999999999999999999999998754
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=153.13 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=90.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|.++++ .+||||+++|+|.++
T Consensus 12 G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~ 91 (376)
T cd05598 12 GAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSL 91 (376)
T ss_pred CCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence 468899998754 578999999864321 22334555655532 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
+... ..++......++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|.
T Consensus 92 i~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~ 149 (376)
T cd05598 92 LIRL-GIFEEDLARFYIAELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCT 149 (376)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence 8653 34677777889999999999999 6789999999999999999999999999975
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-15 Score=153.03 Aligned_cols=115 Identities=27% Similarity=0.309 Sum_probs=86.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++ .+|+||+. +
T Consensus 27 g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~ 105 (353)
T cd07850 27 GAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-A 105 (353)
T ss_pred CCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-C
Confidence 46788999875 467899999875322 112223334444422 36677775 4
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+.+.. .+++.+...++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 106 ~l~~~~~~---~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~ 170 (353)
T cd07850 106 NLCQVIQM---DLDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 170 (353)
T ss_pred CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEccCccceeCCC
Confidence 67666543 2788888999999999999999 66899999999999999999999999999986643
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-15 Score=160.13 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=95.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh---------------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK---------------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~---------------------------Lv~ey~~~gs 458 (639)
.+||.||++... .+..+|||+++.... ....+..|+..++. +|++++ +++
T Consensus 140 G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~ 217 (467)
T PTZ00284 140 GTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPC 217 (467)
T ss_pred ccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCC
Confidence 468999999764 578899999853211 11222223322211 344444 456
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----------------ceeeccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----------------VAHLSDFGM 522 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----------------~~~i~dfgl 522 (639)
|.+++... ..+++.....|+.+++.||+|||+. .+|+||||||+|||++.++ .+||+|||.
T Consensus 218 l~~~l~~~-~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~ 294 (467)
T PTZ00284 218 LLDWIMKH-GPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGG 294 (467)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCc
Confidence 76666532 3588999999999999999999942 4799999999999998765 489999998
Q ss_pred cccccccCCC--------ccc----cccccccccc--c-------CCCCCCCc
Q 041082 523 AKLLLKEDQS--------FTQ----NTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 523 a~~~~~~~~~--------~~~----~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
+......... .+. ...+.++||| | ||+.|.+.
T Consensus 295 ~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~ 347 (467)
T PTZ00284 295 CCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDT 347 (467)
T ss_pred cccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 7643222111 000 1122368999 7 89988753
|
|
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-15 Score=148.80 Aligned_cols=119 Identities=30% Similarity=0.372 Sum_probs=95.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.+|++... .+..+++|.+..... .....+..|++.++ .+|+||+++|+|.++
T Consensus 12 g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~ 91 (290)
T cd05580 12 GSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSH 91 (290)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHH
Confidence 467889988864 578999998864321 22344555655533 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
+... ..+++..+..++.+++.||+||| ..+++||||+|+||+++.++.+|++|||+++.....
T Consensus 92 ~~~~-~~l~~~~~~~~~~qil~~l~~lH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~ 154 (290)
T cd05580 92 LRKS-GRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR 154 (290)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC
Confidence 8653 45889999999999999999999 678999999999999999999999999999876443
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-15 Score=151.30 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------ccccccc--
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-------TQNTNTC-- 540 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-------~~~~~~~-- 540 (639)
.++.....|+.++++||+||| ..+|+||||||+||+++.++.++++|||+|+.+....... ....++.
T Consensus 123 ~~~~~~~~i~~qi~~~l~~lH---~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y 199 (294)
T PHA02882 123 KNKKLIKNIMKDMLTTLEYIH---EHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYY 199 (294)
T ss_pred CCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccc
Confidence 467778899999999999999 6789999999999999999999999999998664321100 0000110
Q ss_pred -ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCcc----eee-----e--ccccccccccccchHHHHHHHHHHHhhc
Q 041082 541 -HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISVM----EVV-----D--VNLLSMEDKYFTTKKQCLSFVFNLAMEC 607 (639)
Q Consensus 541 -~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~~----~~~-----d--~~l~~~~~~~~~~~~~~~~~~~~l~~~C 607 (639)
..+++ |..-.+..|+|+-|..+.+|+....|.... +.+ | ..+... . .....+...+.+++..|
T Consensus 200 ~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 275 (294)
T PHA02882 200 AGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEG-K---IKIKNANKFIYDFIECV 275 (294)
T ss_pred cCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhh-h---hccCCCCHHHHHHHHHH
Confidence 00111 111112223333344444444333332110 000 0 000000 0 00122345677888899
Q ss_pred cCCCCCCCCCHHHHHHHH
Q 041082 608 TAESPKQRINAKESVTRL 625 (639)
Q Consensus 608 ~~~~p~~RP~m~~v~~~l 625 (639)
+..+|++||++.++++.+
T Consensus 276 ~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 276 TKLSYEEKPDYDALIKIF 293 (294)
T ss_pred HhCCCCCCCCHHHHHHhh
Confidence 999999999999999875
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=151.17 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=127.3
Q ss_pred cCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccCC
Q 041082 409 FGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 409 ~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~~ 467 (639)
+|.||.++-. .....|||-+...+.+..+-...|+...+ ++.||-+|+|||.++|+..=
T Consensus 588 YG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskW 667 (1226)
T KOG4279|consen 588 YGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKW 667 (1226)
T ss_pred eeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhcc
Confidence 7889988744 34667888876555444444444444311 25689999999999998633
Q ss_pred ccC--CHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccC---CCccc------
Q 041082 468 YIL--DIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKED---QSFTQ------ 535 (639)
Q Consensus 468 ~~l--~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~---~~~~~------ 535 (639)
.++ ...+.--+..+|.+||.||| ...|||||||-.|||+.. .+.+||+|||-++-+..-. ...+.
T Consensus 668 GPlKDNEstm~fYtkQILeGLkYLH---en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMA 744 (1226)
T KOG4279|consen 668 GPLKDNESTMNFYTKQILEGLKYLH---ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMA 744 (1226)
T ss_pred CCCccchhHHHHHHHHHHHHhhhhh---hcceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhC
Confidence 334 34455667789999999999 778999999999999975 8999999999887553211 00000
Q ss_pred -------cc-cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 -------NT-NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 -------~~-~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
.. ....+|+| | |||+|.-+. |- ++. .++.-++ -.+.| +.+++-..
T Consensus 745 PEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El---gs--pqA--AMFkVGm-yKvHP----------~iPeelsa 806 (1226)
T KOG4279|consen 745 PEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL---GS--PQA--AMFKVGM-YKVHP----------PIPEELSA 806 (1226)
T ss_pred hHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec---CC--hhH--hhhhhcc-eecCC----------CCcHHHHH
Confidence 00 11267888 6 888886532 10 000 0111111 11122 33455566
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.-..+++|-+++|.+||++.+.++
T Consensus 807 eak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 807 EAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred HHHHHHHHHcCCCcccCccHHHhcc
Confidence 7788999999999999999999874
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-15 Score=147.54 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=124.6
Q ss_pred hhhhcCCCCCchhccc-----c--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 449 LVLEYMPHGSLEKCLY-----S--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~-----~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
..|.|+.-|+|..+|. + ....++-.+.+.+|.|+|.|++||| ..+|+|.||-++|.++|+...+|++|-.
T Consensus 365 V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh---~~~ViHkDiAaRNCvIdd~LqVkltDsa 441 (563)
T KOG1024|consen 365 VLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLH---NHGVIHKDIAARNCVIDDQLQVKLTDSA 441 (563)
T ss_pred EEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHH---hcCcccchhhhhcceehhheeEEeccch
Confidence 4578888899988886 2 2234666788999999999999999 7889999999999999999999999999
Q ss_pred ccccccccCCCc-ccccccc-ccccc-c---CCCCCCCccCCCccchHHHHHh-hCCCCcceeeeccc---ccccccccc
Q 041082 522 MAKLLLKEDQSF-TQNTNTC-HHRIY-G---TRRNPQMNFFSGEMTLKSWVND-LLPISVMEVVDVNL---LSMEDKYFT 591 (639)
Q Consensus 522 la~~~~~~~~~~-~~~~~~~-~~dvy-G---tg~~p~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~~l---~~~~~~~~~ 591 (639)
++|-+.+.++.. ....... |+-.. . .-.+...|+|+.|+.+|+..+. ..|.. .+||.- .-.++++..
T Consensus 442 LSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pya---eIDPfEm~~ylkdGyRla 518 (563)
T KOG1024|consen 442 LSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYA---EIDPFEMEHYLKDGYRLA 518 (563)
T ss_pred hccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcc---ccCHHHHHHHHhccceec
Confidence 999887776541 1000000 00000 0 1111222344455555554432 11221 123211 112234555
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHhh
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
.+-+|..+++.++..||+..|++||++.|++.-|.++...+.++|
T Consensus 519 QP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~qlt~YV 563 (563)
T KOG1024|consen 519 QPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQLTRYV 563 (563)
T ss_pred CCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhhcC
Confidence 677899999999999999999999999999999998876665543
|
|
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-15 Score=154.04 Aligned_cols=115 Identities=25% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.-. .+..+|+|++.... ......+..|+..++ .+|+||+++
T Consensus 35 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~- 113 (364)
T cd07875 35 GAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA- 113 (364)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCCC-
Confidence 468899988753 57889999886432 112223333433321 367888865
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++...+. ..+++.+...++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++....
T Consensus 114 ~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 178 (364)
T cd07875 114 NLCQVIQ---MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 178 (364)
T ss_pred CHHHHHH---hcCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEECCCCcEEEEeCCCccccCC
Confidence 5655553 24788889999999999999999 67899999999999999999999999999986543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-15 Score=148.90 Aligned_cols=200 Identities=22% Similarity=0.293 Sum_probs=123.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCCchh--
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGSLEK-- 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~-- 461 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..+.. +++||++. ++.+
T Consensus 15 G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~-~l~~l~ 93 (288)
T cd06616 15 GAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDI-SLDKFY 93 (288)
T ss_pred CCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC-CHHHHH
Confidence 457889988764 578999998864332 223344455544322 34566553 3333
Q ss_pred -cccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 462 -CLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 462 -~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.+.. ....+++....+++.+++.||+|||+ ..+++||||||+||+++.++.++++|||+++.+......
T Consensus 94 ~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~ 171 (288)
T cd06616 94 KYVYEVLKSVIPEEILGKIAVATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCR 171 (288)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCcc
Confidence 2222 22458889999999999999999995 347999999999999999999999999999765432110
Q ss_pred ---ccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 533 ---FTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 533 ---~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
.+. ...+.++||| | ||+.|.... ....+-+...... ..+.+.. ...
T Consensus 172 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~----~~~~~~~~~~~~~-----~~~~~~~------~~~ 236 (288)
T cd06616 172 PYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKW----NSVFDQLTQVVKG-----DPPILSN------SEE 236 (288)
T ss_pred CccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhc----chHHHHHhhhcCC-----CCCcCCC------cCC
Confidence 000 0122356666 5 566664321 0111111111100 0011111 011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
......+.+++.+|++.+|++||++.+|++.
T Consensus 237 ~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~ 267 (288)
T cd06616 237 REFSPSFVNFINLCLIKDESKRPKYKELLEH 267 (288)
T ss_pred CccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 2234467889999999999999999999863
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=148.38 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=97.3
Q ss_pred CcCcceEEEecC-CceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.||.||||+-.+ .+.||+|.++.... ...+....|+++++. +|.||+.+ +|..+|.
T Consensus 14 sfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~ 92 (808)
T KOG0597|consen 14 SFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILE 92 (808)
T ss_pred ccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHH
Confidence 478999998754 68999999875532 234556677777543 57889877 9988886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
. +..+...+...||.+...||.||| +.+|+|||+||.|||+++.+.+|+||||+||......
T Consensus 93 ~-d~~lpEe~v~~~a~~LVsaL~yLh---s~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t 154 (808)
T KOG0597|consen 93 Q-DGKLPEEQVRAIAYDLVSALYYLH---SNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNT 154 (808)
T ss_pred h-ccCCCHHHHHHHHHHHHHHHHHHH---hcCcccccCCcceeeecCCCceeechhhhhhhcccCc
Confidence 4 456899999999999999999999 8899999999999999999999999999999876544
|
|
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=151.02 Aligned_cols=209 Identities=21% Similarity=0.237 Sum_probs=127.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
+++|.||++.. .++..+|+|.+.... ......+..|+..++ .+|++|+ ++
T Consensus 26 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~ 104 (343)
T cd07880 26 GAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GT 104 (343)
T ss_pred cCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CC
Confidence 45788999874 468899999875322 112233444544432 2566776 55
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+++.. ..+++.....++.++++|++||| ..+|+||||||+||+++.++.++++|||+++........
T Consensus 105 ~l~~~~~~--~~l~~~~~~~i~~qi~~al~~LH---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~ 179 (343)
T cd07880 105 DLGKLMKH--EKLSEDRIQFLVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTR 179 (343)
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCC
Confidence 77766643 35889999999999999999999 678999999999999999999999999999865432211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCc----------cchHHHHHhhCCCCcceeee--cccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGE----------MTLKSWVNDLLPISVMEVVD--VNLL 583 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~----------~~l~~~~~~~~~~~~~~~~d--~~l~ 583 (639)
.+. ...+.++|+| | +|+.|....-... ....+|.............. +...
T Consensus 180 ~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (343)
T cd07880 180 WYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFR 259 (343)
T ss_pred cccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccC
Confidence 000 1123478898 6 7887765311000 00011111110000000000 0000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... .....+.+...+.++..+|++.+|++|||+.++++
T Consensus 260 ~~~--~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~ 297 (343)
T cd07880 260 KKD--FRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA 297 (343)
T ss_pred cch--HHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000 00000122335778999999999999999999984
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=149.30 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=89.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh--------------hhhHHHHHHHHH--------------------hhhh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA--------------FKSFDVACDMMK--------------------KLVL 451 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~--------------~~~f~~e~~~~~--------------------~Lv~ 451 (639)
+++|.||++... .+..+|+|.+....... ...+..|++.++ .+|+
T Consensus 20 G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 99 (335)
T PTZ00024 20 GTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGDFINLVM 99 (335)
T ss_pred CCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEE
Confidence 468899999854 68899999875432211 012344554432 2678
Q ss_pred hcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 452 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 452 ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
||++ |+|.+++.. ...+++.....++.+++.||+||| ..+++|||||++||+++.++.++++|||+++...
T Consensus 100 e~~~-~~l~~~l~~-~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~ 170 (335)
T PTZ00024 100 DIMA-SDLKKVVDR-KIRLTESQVKCILLQILNGLNVLH---KWYFMHRDLSPANIFINSKGICKIADFGLARRYG 170 (335)
T ss_pred eccc-cCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHeEECCCCCEEECCccceeecc
Confidence 8986 688887753 234788889999999999999999 6789999999999999999999999999997654
|
|
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=154.00 Aligned_cols=115 Identities=24% Similarity=0.345 Sum_probs=92.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|++.... ......+..|.++++ .+|+||+++|+|.++
T Consensus 12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~ 91 (377)
T cd05629 12 GAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTM 91 (377)
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHH
Confidence 46889999875 467899999886432 122344555555532 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++.
T Consensus 92 l~~-~~~~~~~~~~~~~~ql~~aL~~LH---~~givHrDlkp~NIll~~~~~~kl~DfGla~~ 150 (377)
T cd05629 92 LIK-YDTFSEDVTRFYMAECVLAIEAVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLSTG 150 (377)
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEEeecccccc
Confidence 864 345778888889999999999999 67899999999999999999999999999963
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=145.96 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=93.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..|..+++|.+..... .....+..|+.+++ .+|+||+++++|.++
T Consensus 4 g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 83 (277)
T cd05577 4 GGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYH 83 (277)
T ss_pred CCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHH
Confidence 46789998875 4678999998864322 12233444555532 378999999999988
Q ss_pred cccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.... ..+++..+..++.+++.|+.||| ..+++|||||++||+++.++.++++|||+++...
T Consensus 84 l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~ 146 (277)
T cd05577 84 IYNVGEPGFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELK 146 (277)
T ss_pred HHHcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEECCCCCEEEccCcchhhhc
Confidence 86533 35899999999999999999999 6689999999999999999999999999987654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=144.22 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=101.4
Q ss_pred hhhhcCCCCCchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 449 LVLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+|+||+++++|.+++.. ....+++..+..++.+++.|+.||| ..+++|+|||++||+++. ..++++|||+++.
T Consensus 79 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~ 154 (260)
T cd08222 79 IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRL 154 (260)
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH---HcCccccCCChhheEeec-CCEeecccCceee
Confidence 68999999999988763 3356899999999999999999999 678999999999999975 5599999999876
Q ss_pred ccccCCCc-c----------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecc
Q 041082 526 LLKEDQSF-T----------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVN 581 (639)
Q Consensus 526 ~~~~~~~~-~----------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 581 (639)
........ . . ...+.++|+| | +|+.|..+ ....+......... .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~-----~~- 223 (260)
T cd08222 155 LMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG-----QNFLSVVLRIVEGP-----TP- 223 (260)
T ss_pred cCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHHcCC-----CC-
Confidence 64322110 0 0 0011245666 4 45544421 11111111111000 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+......+.+++.+|+..+|++||++.|+++
T Consensus 224 ---------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 224 ---------SLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR 256 (260)
T ss_pred ---------CCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence 011223346778889999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-14 Score=151.43 Aligned_cols=116 Identities=28% Similarity=0.307 Sum_probs=91.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..+...++ .+|+||+++|+|.++
T Consensus 54 G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~ 133 (371)
T cd05622 54 GAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL 133 (371)
T ss_pred cCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence 468899998865 568899998864321 12233444554432 368999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+... .++......++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.+.
T Consensus 134 ~~~~--~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~ 193 (371)
T cd05622 134 MSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN 193 (371)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcC
Confidence 8643 4677777889999999999999 7789999999999999999999999999998664
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=150.26 Aligned_cols=209 Identities=19% Similarity=0.211 Sum_probs=127.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHH--------------------------HhhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMM--------------------------KKLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~g 457 (639)
.++|.+|++... ++..+++|++.... ......+..++..+ ..+|+||+ ++
T Consensus 26 g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~ 104 (343)
T cd07851 26 GAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GA 104 (343)
T ss_pred CCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CC
Confidence 467899999875 57889999876422 11112232333331 23566776 45
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+++.. ..+++.....++.++++|++||| ..+|+||||||+||+++.++.++++|||++.........
T Consensus 105 ~L~~~~~~--~~l~~~~~~~~~~ql~~aL~~LH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~ 179 (343)
T cd07851 105 DLNNIVKC--QKLSDDHIQFLVYQILRGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATR 179 (343)
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEECCCCCEEEccccccccccccccCCcccc
Confidence 88777754 35899999999999999999999 678999999999999999999999999999865432111
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC------------cceeeecccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------------VMEVVDVNLL 583 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------------~~~~~d~~l~ 583 (639)
.+. ...+.++||| | ||+.|.... .............+.. ....+.....
T Consensus 180 ~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (343)
T cd07851 180 WYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGS--DHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQ 257 (343)
T ss_pred cccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccc
Confidence 010 1123478998 6 888776431 1110001000101000 0000000000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
................+.+++.+|++.+|++|||+.||++
T Consensus 258 ~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~ 297 (343)
T cd07851 258 MPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA 297 (343)
T ss_pred cCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence 0000000000112346788999999999999999999975
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=143.57 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=87.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHH----------------HHhhhhhcCCCCCchhccccCCcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDM----------------MKKLVLEYMPHGSLEKCLYSSNYI 469 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~----------------~~~Lv~ey~~~gsL~~~l~~~~~~ 469 (639)
..++.||++.- .++..+++|++........ ........ ...+|+||+++|+|.+++... ..
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~ 81 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSR-ERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF-LN 81 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchhhhhh-HHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh-cC
Confidence 34677888765 4678999999865431110 00000000 123789999999999888643 34
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+++.....++.+++.||+|+| ..+|+||||||+||+++.++.++++|||.+....
T Consensus 82 l~~~~~~~~~~ql~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~ 136 (237)
T cd05576 82 IPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVE 136 (237)
T ss_pred CCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHEEEcCCCCEEEecccchhccc
Confidence 899999999999999999999 6789999999999999999999999999876554
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=141.98 Aligned_cols=118 Identities=33% Similarity=0.390 Sum_probs=93.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.+|++... .+..+++|.+...... ....+..+++.++ .+||||+++++|.++
T Consensus 4 G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~ 83 (250)
T cd05123 4 GSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSH 83 (250)
T ss_pred CCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHH
Confidence 457889988865 4789999987654321 2234444444422 368899999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+... ..+++.....++.++++|+.|+| ..+++|+||||+||+++.++.++++|||++.....
T Consensus 84 l~~~-~~l~~~~~~~~~~qi~~~l~~lh---~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~ 145 (250)
T cd05123 84 LSKE-GRFSEERARFYAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSS 145 (250)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcceEEEcCCCcEEEeecCcceeccc
Confidence 8653 35899999999999999999999 67899999999999999999999999999876644
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-14 Score=152.31 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=91.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|..+++ .+||||+++|+|.++
T Consensus 12 G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~ 91 (382)
T cd05625 12 GAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSL 91 (382)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHH
Confidence 46889999975 457889999986542 122344555655532 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+... ..++......++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+++.
T Consensus 92 l~~~-~~~~e~~~~~~~~qi~~al~~lH---~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~ 150 (382)
T cd05625 92 LIRM-GIFPEDLARFYIAELTCAVESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 150 (382)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence 8653 34677777889999999999999 66899999999999999999999999999753
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=160.71 Aligned_cols=117 Identities=30% Similarity=0.430 Sum_probs=90.3
Q ss_pred cCcceEEE-ecCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
||.||-+. +..|...|+|-+..+.. ..++....|+..+. .+.|||+++|+|++.+..
T Consensus 1248 fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~ 1327 (1509)
T KOG4645|consen 1248 FGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEH 1327 (1509)
T ss_pred eeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHHh
Confidence 88999887 45688889987765443 34455556665532 367999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
+ ...+...-..+..+++.|++||| ..+|||||||+.||+||..+-.|.+|||.|+-+...
T Consensus 1328 g-ri~dE~vt~vyt~qll~gla~LH---~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1328 G-RIEDEMVTRVYTKQLLEGLAYLH---EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred c-chhhhhHHHHHHHHHHHHHHHHH---hcCceecCCCccceeeecCCcEEeecccceeEecCc
Confidence 3 23444444456788999999999 778999999999999999999999999999876543
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=145.48 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=84.5
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhhhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+.... ....+..|+..++. +++||+.+ ++.+
T Consensus 12 G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~ 88 (317)
T cd07868 12 GTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWH 88 (317)
T ss_pred CCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC-CHHH
Confidence 468899999864 45789999875432 12234445544322 46777754 6666
Q ss_pred cccc--------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeecccccccccc
Q 041082 462 CLYS--------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 462 ~l~~--------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~ 527 (639)
++.. ....+++.....++.+++.||+||| +.+|+||||||+||++ +.++.+||+|||+|+...
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~ 163 (317)
T cd07868 89 IIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN 163 (317)
T ss_pred HHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccC
Confidence 5532 1124788888999999999999999 6679999999999999 456789999999998764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=147.76 Aligned_cols=116 Identities=23% Similarity=0.345 Sum_probs=84.8
Q ss_pred CCcCcceEEEec-C--CceeeeEEechhhhh--hhhhHHHHHHHHHh-------------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ-D--GMKVAVKVFDLQYER--AFKSFDVACDMMKK-------------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~-~--g~~vavK~l~~~~~~--~~~~f~~e~~~~~~-------------------------Lv~ey~~~ 456 (639)
+++|.||++... . +..+|+|.+...... ..+.+..|+..++. ++++|+.
T Consensus 11 G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~- 89 (332)
T cd07857 11 GAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME- 89 (332)
T ss_pred cCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-
Confidence 467889998865 3 678999987643211 12233334433221 2334554
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++|.+++.. ...+++..+..++.+++.||+||| ..+++||||||+||+++.++.++|+|||+++.+.
T Consensus 90 ~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~ 156 (332)
T cd07857 90 ADLHQIIRS-GQPLTDAHFQSFIYQILCGLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGFS 156 (332)
T ss_pred CCHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHeEEcCCCCEEeCcCCCceecc
Confidence 577776653 345889999999999999999999 6679999999999999999999999999997654
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-14 Score=147.74 Aligned_cols=211 Identities=21% Similarity=0.252 Sum_probs=129.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
+++|.||++.- ..+..+++|.+.... ....+.+..|+..++ .+++||+ +++|.+.
T Consensus 21 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~-~~~L~~~ 99 (328)
T cd07856 21 GAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLHRL 99 (328)
T ss_pred cCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehh-ccCHHHH
Confidence 56889999874 478899999875322 122344545555432 2577887 4578777
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------cc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--------FT 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--------~~ 534 (639)
+.. ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.++++|||+++........ .+
T Consensus 100 ~~~--~~~~~~~~~~~~~ql~~aL~~LH---~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aP 174 (328)
T cd07856 100 LTS--RPLEKQFIQYFLYQILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAP 174 (328)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCc
Confidence 653 34678878889999999999999 678999999999999999999999999998765332111 01
Q ss_pred c-----cccccccccc--c-------CCCCCCCccCCC----------ccchHHHHHhhCCCCcceeeecccccccc-cc
Q 041082 535 Q-----NTNTCHHRIY--G-------TRRNPQMNFFSG----------EMTLKSWVNDLLPISVMEVVDVNLLSMED-KY 589 (639)
Q Consensus 535 ~-----~~~~~~~dvy--G-------tg~~p~~~~~~~----------~~~l~~~~~~~~~~~~~~~~d~~l~~~~~-~~ 589 (639)
. ...+.++|+| | ||+.|....... +.-..+|.......+..+.+. .+..... ..
T Consensus 175 E~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 253 (328)
T cd07856 175 EIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQ-SLPKREPVPF 253 (328)
T ss_pred eeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHh-hccccCCCcH
Confidence 1 1223478888 6 888776432100 000111221111111011100 0000000 00
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+..+.....+.+++.+|++.+|++||++.+++..
T Consensus 254 ~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~ 288 (328)
T cd07856 254 SEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH 288 (328)
T ss_pred HHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 00001123567788999999999999999999764
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=145.08 Aligned_cols=117 Identities=30% Similarity=0.422 Sum_probs=87.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~~ 455 (639)
.++|.||++... ++..+++|.+...... ....+..|++.++ .+|++|+.
T Consensus 19 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~ 98 (311)
T cd07866 19 GTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMD 98 (311)
T ss_pred CCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCC
Confidence 457889999864 5788999987543321 1123334444422 24567776
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
. ++...+......+++.+...++.++++||+||| ..+++||||||+||+++.++.++++|||+++...
T Consensus 99 ~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~ 166 (311)
T cd07866 99 H-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLH---ENHILHRDIKAANILIDNQGILKIADFGLARPYD 166 (311)
T ss_pred c-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence 4 566655544456899999999999999999999 6689999999999999999999999999998654
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=147.00 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=135.3
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhhh---hhhHHHHHHHHHh---------------------hhhhcCCCCCchhc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYERA---FKSFDVACDMMKK---------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~~---~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~~ 462 (639)
.||.||++.-.. |..+|+|.+....... ......|+.+++. +|+|++.+|.|.+.
T Consensus 47 ~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~ 126 (382)
T KOG0032|consen 47 QFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDR 126 (382)
T ss_pred CceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHH
Confidence 478999998765 8999999987655432 3467777777543 68999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC----cceeeccccccccccccCCCc----c
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKLLLKEDQSF----T 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~~~~~~~~~----~ 534 (639)
+... .++......++.+++.|+.|+| ..+|+|||+||+|+|+... +..+++|||+|.......... +
T Consensus 127 i~~~--~~sE~da~~~~~~il~av~~lH---~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gt 201 (382)
T KOG0032|consen 127 IVKK--HYSERDAAGIIRQILEAVKYLH---SLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGT 201 (382)
T ss_pred HHHc--cCCHHHHHHHHHHHHHHHHHHH---hCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCC
Confidence 8654 3788888999999999999999 6899999999999999643 479999999999877622110 0
Q ss_pred ------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 535 ------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
. ...+...|+| | +|.+|..+.-..+..+ . +...-.++ ..+..+.
T Consensus 202 p~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~-~-----i~~~~~~f-----------~~~~w~~ 264 (382)
T KOG0032|consen 202 PEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL-A-----ILRGDFDF-----------TSEPWDD 264 (382)
T ss_pred ccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-H-----HHcCCCCC-----------CCCCccc
Confidence 0 0112267777 5 7777765321111111 0 00000001 0111233
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
....+-++...++..+|.+|+|..++++.
T Consensus 265 is~~akd~i~~ll~~dp~~R~ta~~~L~H 293 (382)
T KOG0032|consen 265 ISESAKDFIRKLLEFDPRKRLTAAQALQH 293 (382)
T ss_pred cCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence 34456677889999999999999999974
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=150.27 Aligned_cols=77 Identities=27% Similarity=0.285 Sum_probs=66.4
Q ss_pred hhhhhcCCCCCchhccccCC-----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCC
Q 041082 448 KLVLEYMPHGSLEKCLYSSN-----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~-----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~ 504 (639)
.|||||+++|+|.++++... ..++|..+..|+.+++.||+|+| ..+|+||||||
T Consensus 261 ~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp 337 (507)
T PLN03224 261 WLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKP 337 (507)
T ss_pred EEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCch
Confidence 48999999999998886411 13467888999999999999999 66799999999
Q ss_pred CceeecCCcceeecccccccccc
Q 041082 505 SNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 505 ~nill~~~~~~~i~dfgla~~~~ 527 (639)
+||+++.++.+||+|||+++...
T Consensus 338 ~NILl~~~~~~kL~DFGla~~~~ 360 (507)
T PLN03224 338 ENLLVTVDGQVKIIDFGAAVDMC 360 (507)
T ss_pred HhEEECCCCcEEEEeCcCccccc
Confidence 99999999999999999997643
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-14 Score=145.27 Aligned_cols=210 Identities=21% Similarity=0.255 Sum_probs=125.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
.++|.||++.. ..|..+|+|.+.... ......+..++..++. +|+||+..
T Consensus 26 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~- 104 (342)
T cd07879 26 GAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT- 104 (342)
T ss_pred cCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEeccccc-
Confidence 45788999885 468899999875322 1122334445544332 34455432
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
++..+. ...+++.....++.++++||+||| ..+++||||||+||+++.++.++++|||+++........
T Consensus 105 ~l~~~~---~~~~~~~~~~~~~~qi~~aL~~LH---~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~ 178 (342)
T cd07879 105 DLQKIM---GHPLSEDKVQYLVYQMLCGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 178 (342)
T ss_pred CHHHHH---cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeee
Confidence 443332 124788889999999999999999 667999999999999999999999999999865332111
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHH--HhhCCCC---cceeee-----------
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWV--NDLLPIS---VMEVVD----------- 579 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~--~~~~~~~---~~~~~d----------- 579 (639)
.+. ...+.++||| | +|+.|.... ..+..+. ....+.. ..+.++
T Consensus 179 ~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (342)
T cd07879 179 WYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK----DYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSL 254 (342)
T ss_pred cccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhc
Confidence 011 1123478998 6 888876531 1111110 0000000 000000
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH--HHHhH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR--LLKIR 629 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~--l~~~~ 629 (639)
+...... .....+.....+.+++.+|++.+|++||++.||+.. ++..+
T Consensus 255 ~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~ 304 (342)
T cd07879 255 PKYPRKD--FSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFR 304 (342)
T ss_pred CCcccch--HHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcc
Confidence 0000000 000000122346789999999999999999999854 44443
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=138.36 Aligned_cols=116 Identities=27% Similarity=0.424 Sum_probs=91.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-----hhhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-----ERAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-----~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.+|++... .+..+++|.+.... ......+..|++.++ .+++||+++++
T Consensus 13 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~ 92 (264)
T cd06653 13 GAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGS 92 (264)
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCc
Confidence 457889998864 57899999874321 122345566665532 25789999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
|.+++... ..+++....+++.+++.|++||| ..+++||||||+||+++.++.++++|||+++..
T Consensus 93 L~~~~~~~-~~l~~~~~~~~~~~i~~al~~LH---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~ 156 (264)
T cd06653 93 IKDQLKAY-GALTENVTRRYTRQILQGVSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRI 156 (264)
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCEEECcccccccc
Confidence 98887643 34788888999999999999999 667999999999999999999999999999764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-14 Score=140.81 Aligned_cols=118 Identities=33% Similarity=0.473 Sum_probs=93.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.+|++... ++..+++|++..+.. .....+..+..+++ .+|+||+++++|.+
T Consensus 12 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 91 (280)
T cd05581 12 GSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQ 91 (280)
T ss_pred CCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHH
Confidence 467889999865 688999999865321 11233333333321 26789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++... ..++|.....|+.+++.||+||| ..+++|+|||++||+++.++.++++|||++.....
T Consensus 92 ~l~~~-~~l~~~~~~~i~~ql~~~l~~Lh---~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~ 154 (280)
T cd05581 92 YIRKY-GSLDEKCTRFYAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDP 154 (280)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence 88653 36899999999999999999999 66799999999999999999999999999986654
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-14 Score=144.30 Aligned_cols=213 Identities=22% Similarity=0.290 Sum_probs=142.5
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
..||.||++.-.+ +...|.|+++.....-..+|..+++++.. +..||+++|.....+-+
T Consensus 43 GAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlE 122 (1187)
T KOG0579|consen 43 GAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLE 122 (1187)
T ss_pred ccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHH
Confidence 4589999998654 45677788887777777778777776321 24588999988777665
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccccccc---c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH---H 542 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~---~ 542 (639)
-...|+..+..-++.++..||.||| +..|||||||+-|||++-||.++++|||.+.-............++.. .
T Consensus 123 L~r~LtE~QIqvvc~q~ldALn~LH---s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAP 199 (1187)
T KOG0579|consen 123 LGRVLTEDQIQVVCYQVLDALNWLH---SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAP 199 (1187)
T ss_pred hccccchHHHHHHHHHHHHHHHHHh---hcchhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccc
Confidence 5567899999999999999999999 778999999999999999999999999997644322111111122221 1
Q ss_pred ccc--c-CCCCCCC---ccCCCccchHHHHHhhCCCC---cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCC
Q 041082 543 RIY--G-TRRNPQM---NFFSGEMTLKSWVNDLLPIS---VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPK 613 (639)
Q Consensus 543 dvy--G-tg~~p~~---~~~~~~~~l~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~ 613 (639)
.|. - ..-.|++ |+|+.|..|.+.+..--|+. .+.++- .+........-.+...-..+-++.-.|+..+|+
T Consensus 200 EVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVll-KiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~ 278 (1187)
T KOG0579|consen 200 EVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL-KIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPR 278 (1187)
T ss_pred hheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHH-HHhhcCCCcccCcchhhhHHHHHHHHHHhcCCc
Confidence 111 0 2335554 45777888888776544442 122210 000000001111233455667777799999999
Q ss_pred CCCCHHHHHH
Q 041082 614 QRINAKESVT 623 (639)
Q Consensus 614 ~RP~m~~v~~ 623 (639)
.||+..++++
T Consensus 279 ~Rp~aaqll~ 288 (1187)
T KOG0579|consen 279 NRPPAAQLLK 288 (1187)
T ss_pred cCCCHHHHhh
Confidence 9999999884
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-14 Score=130.08 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=115.9
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhhh-hhhHHHHHHHH------Hh---------------hhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYERA-FKSFDVACDMM------KK---------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~~-~~~f~~e~~~~------~~---------------Lv~ey~~~gsL~~~l~ 464 (639)
..|.|++++... |...|||...-..+.. .+.+...++.+ .+ +-||.|.- -..+++.
T Consensus 104 tcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~-C~ekLlk 182 (391)
T KOG0983|consen 104 TCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST-CAEKLLK 182 (391)
T ss_pred CccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH-HHHHHHH
Confidence 357899998764 7899999886544321 12222222221 11 22333321 1222332
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRI 544 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~~dv 544 (639)
.....+...-.=++...+..||.||-+ ...|+|||+||+|||+|+.+++|+||||++..+.+...+. . ++-+..
T Consensus 183 rik~piPE~ilGk~tva~v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAht-r---sAGC~~ 256 (391)
T KOG0983|consen 183 RIKGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHT-R---SAGCAA 256 (391)
T ss_pred HhcCCchHHhhhhhHHHHHHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeecccccc-c---ccCCcc
Confidence 222334444445677788899999986 6689999999999999999999999999997766543221 0 111222
Q ss_pred c-c----CCC-CCC----CccCCCccchHHHHHhhCCCCc--c------eeee---ccccccccccccchHHHHHHHHHH
Q 041082 545 Y-G----TRR-NPQ----MNFFSGEMTLKSWVNDLLPISV--M------EVVD---VNLLSMEDKYFTTKKQCLSFVFNL 603 (639)
Q Consensus 545 y-G----tg~-~p~----~~~~~~~~~l~~~~~~~~~~~~--~------~~~d---~~l~~~~~~~~~~~~~~~~~~~~l 603 (639)
| + +.. .|. .|+|+.|..|++.++..+|... . .+++ |.+.+. ..-...+.++
T Consensus 257 YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~--------~gFSp~F~~f 328 (391)
T KOG0983|consen 257 YMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGH--------MGFSPDFQSF 328 (391)
T ss_pred ccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcc--------cCcCHHHHHH
Confidence 3 2 000 111 1334556666666665555431 1 1111 111111 0022345667
Q ss_pred HhhccCCCCCCCCCHHHHHH
Q 041082 604 AMECTAESPKQRINAKESVT 623 (639)
Q Consensus 604 ~~~C~~~~p~~RP~m~~v~~ 623 (639)
...|+..++.+||.-.+.++
T Consensus 329 v~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 329 VKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred HHHHhhcCcccCcchHHHhc
Confidence 77999999999999988775
|
|
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=144.65 Aligned_cols=193 Identities=24% Similarity=0.350 Sum_probs=136.2
Q ss_pred cCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------------hhhhcCCCCCchh
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~gsL~~ 461 (639)
.|.||++. ...++.+|+|+.+..... ..+...|..+.+. ||||||.+||..+
T Consensus 32 ygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTD 110 (953)
T KOG0587|consen 32 YGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTD 110 (953)
T ss_pred ceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHH
Confidence 56788877 457889999998766443 2355555555332 8999999999999
Q ss_pred cccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-c-----
Q 041082 462 CLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-T----- 534 (639)
Q Consensus 462 ~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~----- 534 (639)
++.. ....++|....-|+..+.+|+.+|| ...++|||+|-.||||+.++++|+.|||+++.++....-. +
T Consensus 111 LVKn~~g~rl~E~~IaYI~re~lrgl~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP 187 (953)
T KOG0587|consen 111 LVKNTKGNRLKEEWIAYILREILRGLAHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTP 187 (953)
T ss_pred HHhhhcccchhhHHHHHHHHHHHHHHHHHh---hcceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCc
Confidence 8875 3456899988999999999999999 7889999999999999999999999999999886543110 0
Q ss_pred --------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 535 --------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 535 --------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...-...+|+| | .|..|..|+.. ++..++... -=-|++ .
T Consensus 188 ~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP--------mraLF~IpR--NPPPkL--------k 249 (953)
T KOG0587|consen 188 YWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP--------MRALFLIPR--NPPPKL--------K 249 (953)
T ss_pred ccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch--------hhhhccCCC--CCCccc--------c
Confidence 01112267777 4 45555544321 112221100 001111 2
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+...-.++-+.+..|+..+-.+||+|.+.++
T Consensus 250 rp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~ 281 (953)
T KOG0587|consen 250 RPKKWSKKFNDFISTCLVKDYEQRPSTEELLK 281 (953)
T ss_pred chhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence 24566778889999999999999999998874
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=139.19 Aligned_cols=194 Identities=22% Similarity=0.252 Sum_probs=127.1
Q ss_pred CCcCcceEEEecCCceeeeEEechh--hhhhhhhHHHHHHHHHh---------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQ--YERAFKSFDVACDMMKK---------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~--~~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~~l 463 (639)
.|...||+....+...+|+|++.+. ..+....|..|+..+.+ +||||- ..+|.++|
T Consensus 372 GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~G-d~DL~kiL 450 (677)
T KOG0596|consen 372 GGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECG-DIDLNKIL 450 (677)
T ss_pred CCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecc-cccHHHHH
Confidence 3556789988887788888876443 24556778888877544 344543 34888888
Q ss_pred ccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-c-ccccc-
Q 041082 464 YSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-T-QNTNT- 539 (639)
Q Consensus 464 ~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~-~~~~~- 539 (639)
.... ...+|. +..+-.++..|+.++| ..+|||.||||.|+|+- +|..|+.|||+|..+..+..+. . ..++|
T Consensus 451 ~k~~~~~~~~~-lk~ywkqML~aV~~IH---~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~ 525 (677)
T KOG0596|consen 451 KKKKSIDPDWF-LKFYWKQMLLAVKTIH---QHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTV 525 (677)
T ss_pred HhccCCCchHH-HHHHHHHHHHHHHHHH---HhceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcc
Confidence 7643 334574 5668899999999999 77899999999999885 5789999999999887665430 0 00111
Q ss_pred -------------------------cccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 540 -------------------------CHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 540 -------------------------~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
.++||| | -|+.|+.+ ..-.|++. ..+.||.-.-+
T Consensus 526 NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~------~~n~~aKl------~aI~~P~~~Ie 593 (677)
T KOG0596|consen 526 NYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQ------IINQIAKL------HAITDPNHEIE 593 (677)
T ss_pred cccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHH------HHHHHHHH------HhhcCCCcccc
Confidence 156666 5 45555432 11123332 23444432111
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+..+ ...++++|-.|++++|++||+..|+++
T Consensus 594 fp~~~~-----~~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 594 FPDIPE-----NDELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred ccCCCC-----chHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 111111 112788889999999999999999985
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=142.98 Aligned_cols=114 Identities=27% Similarity=0.392 Sum_probs=87.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------------------hhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------------------KLVL 451 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------------------~Lv~ 451 (639)
+++|.||++.. ..|..+++|.+........+.+..|+++++ .+|+
T Consensus 16 g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 95 (342)
T cd07854 16 GSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQ 95 (342)
T ss_pred CCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEe
Confidence 46788999876 457899999886654444444555554422 2577
Q ss_pred hcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeeccccccccc
Q 041082 452 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLL 526 (639)
Q Consensus 452 ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~ 526 (639)
||++ ++|.+.+.. ..+++.....++.+++.||+||| ..+++|||||++||+++. +..++++|||+++.+
T Consensus 96 e~~~-~~L~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~ 165 (342)
T cd07854 96 EYME-TDLANVLEQ--GPLSEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANVFINTEDLVLKIGDFGLARIV 165 (342)
T ss_pred eccc-ccHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEEECCcccceec
Confidence 8886 477776643 34788889999999999999999 667999999999999984 567899999999765
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=128.58 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=94.3
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
++|.+|++.... +..+++|.+...... ....+..+++.++ .+++||+++++|.+++..
T Consensus 5 ~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~ 84 (215)
T cd00180 5 GFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKE 84 (215)
T ss_pred CceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHh
Confidence 467899988764 789999998765432 2244555555532 367899998999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeeccccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~ 528 (639)
....+++..+..++.+++++++||| ..+++|+||++.||+++. +..++++|||.+.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~lh---~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~ 145 (215)
T cd00180 85 NEGKLSEDEILRILLQILEGLEYLH---SNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTS 145 (215)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccC
Confidence 4346899999999999999999999 568999999999999999 89999999999886543
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=124.60 Aligned_cols=151 Identities=17% Similarity=0.097 Sum_probs=101.2
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-- 534 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-- 534 (639)
|+|.++++.....++|.++..|+.++++||+|||+.. ||+||+++.++.+++ ||+++.........+
T Consensus 1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~~~ 69 (176)
T smart00750 1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVDPY 69 (176)
T ss_pred CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeeccccCCCccc
Confidence 6888888754556999999999999999999999543 999999999999999 999987644321111
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | ||+.|..........+..+.....+.. +.-. .......
T Consensus 70 y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~ 136 (176)
T smart00750 70 FMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADD------PRDR-------SNLESVS 136 (176)
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCC------cccc-------ccHHHHH
Confidence 01123378998 7 888887543222222222222111110 0000 0011111
Q ss_pred --HHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 598 --SFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 598 --~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+.+++.+|++.+|++||++.|+++.+..+...
T Consensus 137 ~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~ 172 (176)
T smart00750 137 AARSFADFMRVCASRLPQRREAANHYLAHCRALFAE 172 (176)
T ss_pred hhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence 2588899999999999999999999998877543
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-14 Score=131.13 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=117.9
Q ss_pred cCcceEEE-ecCCceeeeEEechhhh--hhhhhHHHHHHH--------------------HHhhhhhcCCCCCchhcccc
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYE--RAFKSFDVACDM--------------------MKKLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~--~~~~~f~~e~~~--------------------~~~Lv~ey~~~gsL~~~l~~ 465 (639)
|..||+.. .+.|+..|+|.++.... ..++..++|..+ +.++|+|+|.+|+|..-+-.
T Consensus 24 FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~ 103 (355)
T KOG0033|consen 24 FSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA 103 (355)
T ss_pred hHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHH
Confidence 44455443 35677777777654332 234555666555 33578999999988653322
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCccccccc---
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQNTNT--- 539 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~~~~~~~--- 539 (639)
+...+.....+...||..+|.|.| ..+|||||+||+|++|.. .-.+|++|||+|..+.+..... ..+++
T Consensus 104 -R~~ySEa~aSH~~rQiLeal~yCH---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~-G~~GtP~f 178 (355)
T KOG0033|consen 104 -REFYSEADASHCIQQILEALAYCH---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWH-GFAGTPGY 178 (355)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH---hcCceeccCChhheeeeeccCCCceeecccceEEEeCCccccc-cccCCCcc
Confidence 123455566778899999999999 788999999999999953 3568999999999887433211 11111
Q ss_pred ------------cccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 540 ------------CHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 540 ------------~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...|+| | .|..|..+. + -.+++..-+.+.++.....+...-.
T Consensus 179 maPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~-----~------------~~rlye~I~~g~yd~~~~~w~~is~ 241 (355)
T KOG0033|consen 179 LSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-----D------------QHRLYEQIKAGAYDYPSPEWDTVTP 241 (355)
T ss_pred cCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc-----c------------HHHHHHHHhccccCCCCcccCcCCH
Confidence 145555 3 566665420 1 1111111112222211112222233
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...++..+.+..+|++|-|+.|++.
T Consensus 242 ~Ak~LvrrML~~dP~kRIta~EAL~ 266 (355)
T KOG0033|consen 242 EAKSLIRRMLTVNPKKRITADEALK 266 (355)
T ss_pred HHHHHHHHHhccChhhhccHHHHhC
Confidence 4456677888899999999998873
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-13 Score=140.26 Aligned_cols=121 Identities=35% Similarity=0.519 Sum_probs=96.2
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.|+|.||+++ -..|..+|||.++... .+.......|++++| .+||||+.+||
T Consensus 24 Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGs 103 (732)
T KOG4250|consen 24 GAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGS 103 (732)
T ss_pred CccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCc
Confidence 5799999999 4579999999986532 222333444555533 26899999999
Q ss_pred chhcccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--C--CcceeeccccccccccccC
Q 041082 459 LEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--N--NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 459 L~~~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~--~~~~~i~dfgla~~~~~~~ 530 (639)
|...|.+ ....|+....+.+..+++.||.||| ..+|+||||||.||++- + ...=|++|||.||-+.++.
T Consensus 104 L~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s 178 (732)
T KOG4250|consen 104 LRKVLNSPENAYGLPESEFLDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS 178 (732)
T ss_pred HHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC
Confidence 9999986 3456999999999999999999999 67899999999999983 3 3446899999999887665
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=142.17 Aligned_cols=114 Identities=26% Similarity=0.368 Sum_probs=89.9
Q ss_pred CcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.||.|+.+... .+...|||++.....- ...+...|..++. ..||||..+|++..+
T Consensus 380 sFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~ 459 (694)
T KOG0694|consen 380 SFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHH 459 (694)
T ss_pred cCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEE
Confidence 48999999875 5689999998654322 2233334444422 268999999996666
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.+. ..++..+..-+|..|+.||+||| ..+||+||||..|||||.+|.+||+|||+++--
T Consensus 460 ~~~--~~F~e~rarfyaAev~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~ 518 (694)
T KOG0694|consen 460 IHT--DVFSEPRARFYAAEVVLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEG 518 (694)
T ss_pred Eec--ccccHHHHHHHHHHHHHHHHHHH---hcCceeeecchhheEEcccCcEEeccccccccc
Confidence 543 45888888889999999999999 789999999999999999999999999999853
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=129.48 Aligned_cols=119 Identities=34% Similarity=0.408 Sum_probs=93.1
Q ss_pred CcCcceEEEe-cCCceeeeEEechhhhhh---hhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 408 GFGSIYKARI-QDGMKVAVKVFDLQYERA---FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 408 g~g~vy~~~l-~~g~~vavK~l~~~~~~~---~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.||.|...+. .+|...|+|+++....-. ......|..+++ ++||||+++|.|..++
T Consensus 56 SFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~L 135 (355)
T KOG0616|consen 56 SFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYL 135 (355)
T ss_pred ccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHH
Confidence 4777877665 467899999997654322 222333333322 3789999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+... .++.....-+|.+|+.|++||| +..|++||+||+|||+|.++..||.|||+|+-+....
T Consensus 136 rk~~-rF~e~~arFYAAeivlAleylH---~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT 198 (355)
T KOG0616|consen 136 RKSG-RFSEPHARFYAAEIVLALEYLH---SLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRT 198 (355)
T ss_pred HhcC-CCCchhHHHHHHHHHHHHHHHH---hcCeeeccCChHHeeeccCCcEEEEeccceEEecCcE
Confidence 8643 4777777779999999999999 7789999999999999999999999999999776543
|
|
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-13 Score=139.65 Aligned_cols=116 Identities=27% Similarity=0.354 Sum_probs=85.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
.++|.+|++.. .++..+|+|++..... .....+..|+..++. ++++++ ++
T Consensus 28 G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~ 106 (345)
T cd07877 28 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GA 106 (345)
T ss_pred cCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhc-cc
Confidence 46788999874 5688999998864321 112334445444321 223333 56
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+++.. ..+++..+..++.++++|++||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 107 ~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~ 172 (345)
T cd07877 107 DLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD 172 (345)
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChHHEEEcCCCCEEEecccccccccc
Confidence 67666543 34899999999999999999999 67899999999999999999999999999986543
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=140.82 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=127.2
Q ss_pred cCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
|+.|..+.. ..+..||+|.++.+... ....+..|+++|+. +|+||..+|.+++++..
T Consensus 69 f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~ 148 (596)
T KOG0586|consen 69 FAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVK 148 (596)
T ss_pred eEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHh
Confidence 556666654 35789999998866532 33457778877653 68999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc--cccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ--NTNTCHHR 543 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~--~~~~~~~d 543 (639)
....-+ ...-.+..++.+|++|+| ...|+|||||+.||+||.++++||+|||++.++.......+. ....+...
T Consensus 149 ~gr~~e-~~ar~~F~q~vsaveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPE 224 (596)
T KOG0586|consen 149 HGRMKE-KEARAKFRQIVSAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPE 224 (596)
T ss_pred cccchh-hhhhhhhHHHHHHHHHHh---hcceeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChH
Confidence 544344 445567789999999999 677999999999999999999999999999887654322111 11111122
Q ss_pred cc-c-CCCCCCCccCCCccchHHHHHhhCCCC--cceeeecc-ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCH
Q 041082 544 IY-G-TRRNPQMNFFSGEMTLKSWVNDLLPIS--VMEVVDVN-LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 544 vy-G-tg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~d~~-l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m 618 (639)
+| | .--.|--|.|+-|+.|...|...+|.+ ......++ +.+.+.-..... ...-++...-+..+|++|+++
T Consensus 225 l~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms----~dce~lLrk~lvl~Pskr~~~ 300 (596)
T KOG0586|consen 225 LFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMS----CDCEDLLRKFLVLNPSKRGPC 300 (596)
T ss_pred hhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccceee----chhHHHHHHhhccCccccCCH
Confidence 22 2 000122223333443333344444432 11122222 222211000011 122345567778899999999
Q ss_pred HHHHH
Q 041082 619 KESVT 623 (639)
Q Consensus 619 ~~v~~ 623 (639)
.+|.+
T Consensus 301 dqim~ 305 (596)
T KOG0586|consen 301 DQIMK 305 (596)
T ss_pred HHhhh
Confidence 99985
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-13 Score=156.46 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=61.1
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----------------
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN----------------- 511 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~----------------- 511 (639)
.++||+ .++|.+++......+++.++..|+.+|++||+||| ..+|+||||||+|||++.
T Consensus 57 ~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~ 132 (793)
T PLN00181 57 RALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAH---SQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS 132 (793)
T ss_pred hhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHH---hCCeeeccCCchhEEEcccCcEEEeeccccCcccc
Confidence 567887 55999999765556999999999999999999999 678999999999999954
Q ss_pred --Ccceeecccccccc
Q 041082 512 --NMVAHLSDFGMAKL 525 (639)
Q Consensus 512 --~~~~~i~dfgla~~ 525 (639)
++.+|++|||+++.
T Consensus 133 ~~~~~~ki~DfG~a~~ 148 (793)
T PLN00181 133 DEDATTKSREIGSSRR 148 (793)
T ss_pred cccCcccccccccccc
Confidence 45677777777764
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-13 Score=150.32 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=102.9
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++.|||++.-.+.+.++.....-....-.+++.+|+.||+|+| ..+||||||||.||.||.+..+||+|||+|....
T Consensus 672 YIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~ 748 (1351)
T KOG1035|consen 672 YIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLK 748 (1351)
T ss_pred EEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH---hCceeeccCCcceeEEcCCCCeeecccccchhhh
Confidence 4679999998888887753321134455779999999999999 5669999999999999999999999999998732
Q ss_pred cc-------CCC-----------cccccccc---ccccc-cCCCCC---CCccCCCccchHHHHHhhCCCCcce------
Q 041082 528 KE-------DQS-----------FTQNTNTC---HHRIY-GTRRNP---QMNFFSGEMTLKSWVNDLLPISVME------ 576 (639)
Q Consensus 528 ~~-------~~~-----------~~~~~~~~---~~dvy-Gtg~~p---~~~~~~~~~~l~~~~~~~~~~~~~~------ 576 (639)
.. ... .+..++|. +..+. ++.+.+ +-|+|+-|+.+.+.... ++..+..
T Consensus 749 ~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP-F~TsMERa~iL~~ 827 (1351)
T KOG1035|consen 749 ENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP-FGTSMERASILTN 827 (1351)
T ss_pred hhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc-CCchHHHHHHHHh
Confidence 10 000 01111111 00011 122212 22456666666665443 3322211
Q ss_pred eeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 577 VVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 577 ~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.=++.+..+. .-....+..-.+++.+-++.+|.+|||+.|++.
T Consensus 828 LR~g~iP~~~----~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~ 870 (1351)
T KOG1035|consen 828 LRKGSIPEPA----DFFDPEHPEEASLIRWLLSHDPSKRPTATELLN 870 (1351)
T ss_pred cccCCCCCCc----ccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence 1122222110 001223344456778889999999999999874
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-13 Score=144.75 Aligned_cols=54 Identities=37% Similarity=0.522 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 472 IFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 472 ~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
..+...|+.+++.||+||| ..+|+||||||.|||++.++.+||+|||+++.+..
T Consensus 266 ~~~~~~i~~ql~~aL~yLH---~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~ 319 (501)
T PHA03210 266 LKQTRAIMKQLLCAVEYIH---DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEK 319 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEeCCCceecCc
Confidence 3445689999999999999 67899999999999999999999999999987653
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=136.87 Aligned_cols=118 Identities=26% Similarity=0.367 Sum_probs=87.0
Q ss_pred CcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------------hhhhcCCCCCch
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------------LVLEYMPHGSLE 460 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~gsL~ 460 (639)
.||.|.++.-. .++.||||++.... ....+-..|+.++.. +|+|-+.. +|+
T Consensus 198 tFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL~~-NLY 275 (586)
T KOG0667|consen 198 SFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELLST-NLY 275 (586)
T ss_pred ccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhhhh-hHH
Confidence 47888888754 58999999986432 112233334433221 56665543 788
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccC
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~ 530 (639)
+++... ...++......|+.+|+.||.+|| ..+|||+||||+||||.+ ..++||.|||.|.+.....
T Consensus 276 ellK~n~f~Glsl~~ir~~~~Qil~~L~~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~v 345 (586)
T KOG0667|consen 276 ELLKNNKFRGLSLPLVRKFAQQILTALLFLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRV 345 (586)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCChhheeeccCCcCceeEEecccccccCCcc
Confidence 888763 345788888899999999999999 788999999999999975 4579999999998876544
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=114.78 Aligned_cols=116 Identities=30% Similarity=0.373 Sum_probs=90.0
Q ss_pred CcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+|+||+++-. .+..||+|++++... +...+..+|+...+ .||+||+.. +|.++..
T Consensus 14 tygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdq-dlkkyfd 92 (292)
T KOG0662|consen 14 TYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFD 92 (292)
T ss_pred cceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhH-HHHHHHH
Confidence 47889999854 578999999876542 22233344444432 167888865 6766666
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+-...++.........+..+||.|.| +..|+|||+||.|.|+..+++.|++|||+||-++
T Consensus 93 slng~~d~~~~rsfmlqllrgl~fch---shnvlhrdlkpqnllin~ngelkladfglarafg 152 (292)
T KOG0662|consen 93 SLNGDLDPEIVRSFMLQLLRGLGFCH---SHNVLHRDLKPQNLLINRNGELKLADFGLARAFG 152 (292)
T ss_pred hcCCcCCHHHHHHHHHHHHhhhhhhh---hhhhhhccCCcceEEeccCCcEEecccchhhhcC
Confidence 54456888888889999999999999 7889999999999999999999999999999764
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=139.27 Aligned_cols=196 Identities=23% Similarity=0.335 Sum_probs=118.4
Q ss_pred ccccCCCCCCcC----cceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH---------------------Hhhhhhc
Q 041082 399 IDLSMNNFSGFG----SIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------KKLVLEY 453 (639)
Q Consensus 399 l~ls~N~l~g~g----~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------~~Lv~ey 453 (639)
+-++.+.+-|.| .||+|.+. |+.||||++-.... .-..+|++.. .++..|-
T Consensus 509 ~~~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~~---~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL 584 (903)
T KOG1027|consen 509 LFFSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEFF---DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL 584 (903)
T ss_pred eeeccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHhH---HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence 334555555544 38898885 67999998754432 1222344331 1233343
Q ss_pred CCCCCchhccccCCcc---CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----Ccceeecccccccc
Q 041082 454 MPHGSLEKCLYSSNYI---LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-----NMVAHLSDFGMAKL 525 (639)
Q Consensus 454 ~~~gsL~~~l~~~~~~---l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-----~~~~~i~dfgla~~ 525 (639)
+ ..+|.+++..+... ..-..-..+..+++.|+++|| +..||||||||.|||++. ..+|+|+|||+++-
T Consensus 585 C-~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH---sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk 660 (903)
T KOG1027|consen 585 C-ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH---SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK 660 (903)
T ss_pred h-hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH---hcccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence 3 23666666542111 110123456788999999999 678999999999999976 36799999999998
Q ss_pred ccccCCCccc---cc---------------cccccccc--c--------CCCCCCCccCCCccchHHHHHhhCCCCccee
Q 041082 526 LLKEDQSFTQ---NT---------------NTCHHRIY--G--------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEV 577 (639)
Q Consensus 526 ~~~~~~~~~~---~~---------------~~~~~dvy--G--------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (639)
+..+..+.+. .. .+...|++ | .|+.|..+.+....++.. .. .+.
T Consensus 661 l~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~------~~--~~L 732 (903)
T KOG1027|consen 661 LAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILT------GN--YTL 732 (903)
T ss_pred cCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhc------Cc--cce
Confidence 8776554221 01 11145666 5 456777654433222210 11 111
Q ss_pred eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 578 VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 578 ~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
+. +. ..++| ...+|+-+.+..+|..||++.+|+
T Consensus 733 ~~--L~--------~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL 765 (903)
T KOG1027|consen 733 VH--LE--------PLPDC--EAKDLISRMLNPDPQLRPSATDVL 765 (903)
T ss_pred ee--ec--------cCchH--HHHHHHHHhcCCCcccCCCHHHHh
Confidence 10 10 11233 567788899999999999999998
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-12 Score=123.14 Aligned_cols=76 Identities=36% Similarity=0.468 Sum_probs=67.3
Q ss_pred hhhhcCCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---Ccceeeccccccc
Q 041082 449 LVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAK 524 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~ 524 (639)
+|||.|++|.|.+.+.. +...++..+...|..+|+.|+.||| ...|.||||||.|+|... +-..|++|||+|+
T Consensus 136 iVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH---~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK 212 (400)
T KOG0604|consen 136 IVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH---SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAK 212 (400)
T ss_pred eeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH---hcchhhccCChhheeeecCCCCcceEeccccccc
Confidence 68999999999998876 3456888889999999999999999 788999999999999964 5678999999999
Q ss_pred ccc
Q 041082 525 LLL 527 (639)
Q Consensus 525 ~~~ 527 (639)
...
T Consensus 213 ~t~ 215 (400)
T KOG0604|consen 213 ETQ 215 (400)
T ss_pred ccC
Confidence 654
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-13 Score=127.69 Aligned_cols=117 Identities=24% Similarity=0.328 Sum_probs=85.4
Q ss_pred CcCcceEEEecCC-----ceeeeEEechhh--hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCc
Q 041082 408 GFGSIYKARIQDG-----MKVAVKVFDLQY--ERAFKSFDVACDMMK---------------------KLVLEYMPHGSL 459 (639)
Q Consensus 408 g~g~vy~~~l~~g-----~~vavK~l~~~~--~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL 459 (639)
.+|.||++.-.++ ...|+|.+.-+. .+...+..+|+..++ .+++||.+. +|
T Consensus 36 TYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL 114 (438)
T KOG0666|consen 36 TYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DL 114 (438)
T ss_pred ccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhh-hH
Confidence 3788999965432 367888876542 122233334443322 257888886 77
Q ss_pred hhcccc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC----cceeeccccccccccc
Q 041082 460 EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKLLLK 528 (639)
Q Consensus 460 ~~~l~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~~~~ 528 (639)
.+.++. ..+.+.-.....|..+|..|+.||| +.=|+||||||.||++..+ +.+||+|+|+||++..
T Consensus 115 ~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH---~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~ 188 (438)
T KOG0666|consen 115 WHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLH---SNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNN 188 (438)
T ss_pred HHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHh---hhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhc
Confidence 776653 2245777788899999999999999 5559999999999999888 8999999999998754
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=116.60 Aligned_cols=117 Identities=29% Similarity=0.390 Sum_probs=79.6
Q ss_pred cCcceEEE-ecCCceeeeEEechhhhhh-hhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYERA-FKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~~~-~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
+|.+-+.+ .++|+..|+|++...-+.. .+....++++.. .+-||-|.- ||..+-.+
T Consensus 59 yG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~t-Sldkfy~~ 137 (282)
T KOG0984|consen 59 YGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDT-SLDKFYRK 137 (282)
T ss_pred cchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhh-hHHHHHHH
Confidence 56665555 4678999999987654421 222223333311 023455532 44332211
Q ss_pred ---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 466 ---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 466 ---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.+...+..-.=+||..|..||.|||+ ...|+|||+||+|||++.++.+|+||||++-.+.+
T Consensus 138 v~~~g~~ipE~vlGkIa~Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~d 201 (282)
T KOG0984|consen 138 VLKKGGTIPEDVLGKIAVSVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVD 201 (282)
T ss_pred HHhcCCcCchHHhhHhHHHHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehh
Confidence 33445666677899999999999997 55799999999999999999999999999887654
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-12 Score=121.75 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=85.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh---------hhhH-----------------HHHHHHHH-------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA---------FKSF-----------------DVACDMMK------------- 447 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~---------~~~f-----------------~~e~~~~~------------- 447 (639)
.++|.||++..++|..+|+|++....... ...| ..|.+.+.
T Consensus 8 G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~~p~~~ 87 (190)
T cd05147 8 GKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCPEPI 87 (190)
T ss_pred ccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCcEE
Confidence 45789999998889999999986542110 0011 11333211
Q ss_pred -----hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 448 -----KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 448 -----~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
.+||||++++++..... ....+++....+++.+++.+|.|+|| ..+|+||||||.||+++ ++.+++.|||+
T Consensus 88 ~~~~~~iVmE~i~g~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~l~H--~~giiHrDlkP~NIli~-~~~v~LiDFG~ 163 (190)
T cd05147 88 LLKSHVLVMEFIGDDGWAAPRL-KDAPLSESKARELYLQVIQIMRILYQ--DCRLVHADLSEYNLLYH-DGKLYIIDVSQ 163 (190)
T ss_pred EecCCEEEEEEeCCCCCcchhh-hcCCCCHHHHHHHHHHHHHHHHHHHH--hCCcccCCCCHHHEEEE-CCcEEEEEccc
Confidence 37899999877654422 12457888899999999999999954 45799999999999998 47899999999
Q ss_pred cccc
Q 041082 523 AKLL 526 (639)
Q Consensus 523 a~~~ 526 (639)
|...
T Consensus 164 a~~~ 167 (190)
T cd05147 164 SVEH 167 (190)
T ss_pred cccC
Confidence 8754
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-12 Score=135.68 Aligned_cols=149 Identities=22% Similarity=0.251 Sum_probs=101.1
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee-cCCcceeeccccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill-~~~~~~~i~dfgla~~~ 526 (639)
++|+|++.+|-+.+.+... +... ..+..|+.+++.|+.||| ..+|+|||+||.|||+ +..+..+++|||.++.+
T Consensus 392 ~~v~e~l~g~ell~ri~~~-~~~~-~e~~~w~~~lv~Av~~LH---~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 392 YLVMELLDGGELLRRIRSK-PEFC-SEASQWAAELVSAVDYLH---EQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred eeeehhccccHHHHHHHhc-chhH-HHHHHHHHHHHHHHHHHH---hcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence 4788999888665555432 2222 567789999999999999 6789999999999999 58889999999999988
Q ss_pred cccCCC--------cc----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 527 LKEDQS--------FT----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 527 ~~~~~~--------~~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
..+-.+ .+ ....+..+|+| | ||+.|......+ ..+.. +...+ ...
T Consensus 467 ~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~--~i~~~-~~s---------- 532 (612)
T KOG0603|consen 467 ERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHT--RIQMP-KFS---------- 532 (612)
T ss_pred chhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHH--hhcCC-ccc----------
Confidence 765111 00 11234478888 6 888887643322 11111 00000 001
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+|..+|++.+|.+||+|.++..
T Consensus 533 --------~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 533 --------ECVSDEAKDLLQQLLQVDPALRLGADEIGA 562 (612)
T ss_pred --------cccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence 111234566788999999999999999864
|
|
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-12 Score=126.30 Aligned_cols=123 Identities=30% Similarity=0.441 Sum_probs=90.7
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhhhh-------hhhHHHHHHHHHh---------------------hhhhcCCCC
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYERA-------FKSFDVACDMMKK---------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~~~-------~~~f~~e~~~~~~---------------------Lv~ey~~~g 457 (639)
.||..||++. +.....||||.-.+..... .+...+|.++.+. -|.||+++.
T Consensus 474 GGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGN 553 (775)
T KOG1151|consen 474 GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGN 553 (775)
T ss_pred ccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCC
Confidence 4688899986 5567889999764432211 1112233333221 378999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCC
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~ 531 (639)
+|.-+|... +.++......|+.+|..||.||- +..|||+|-||||-||||- ..++.||.|||+++++.++.+
T Consensus 554 DLDFYLKQh-klmSEKEARSIiMQiVnAL~YLN-EikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy 628 (775)
T KOG1151|consen 554 DLDFYLKQH-KLMSEKEARSIIMQIVNALKYLN-EIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSY 628 (775)
T ss_pred chhHHHHhh-hhhhHHHHHHHHHHHHHHHHHHh-ccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCcc
Confidence 998888643 34666667789999999999998 4589999999999999994 468999999999999876553
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-12 Score=130.11 Aligned_cols=134 Identities=26% Similarity=0.316 Sum_probs=99.2
Q ss_pred cccccccccCCCC--------CCcCcceEEEec-CCceeeeEEechhhhhhh---hhHHHHHHHHH--------------
Q 041082 394 KVLVGIDLSMNNF--------SGFGSIYKARIQ-DGMKVAVKVFDLQYERAF---KSFDVACDMMK-------------- 447 (639)
Q Consensus 394 ~~L~~l~ls~N~l--------~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~---~~f~~e~~~~~-------------- 447 (639)
+.|+..-++.|-| .|||.||-+... .|..+|.|.++-....-. .--..|..++.
T Consensus 175 K~lE~qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAf 254 (591)
T KOG0986|consen 175 KWLELQPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAF 254 (591)
T ss_pred HHHHhhhccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeee
Confidence 3344444555555 468999977765 588999998865432211 11112222221
Q ss_pred ------hhhhhcCCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccc
Q 041082 448 ------KLVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDF 520 (639)
Q Consensus 448 ------~Lv~ey~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~df 520 (639)
.||+.-|-+|+|.-++.. ....++..+..-+|..|+.||++|| ...||.||+||.|||||+.++++|||.
T Consensus 255 eTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH---~~~iVYRDLKPeNILLDd~GhvRISDL 331 (591)
T KOG0986|consen 255 ETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH---RRRIVYRDLKPENILLDDHGHVRISDL 331 (591)
T ss_pred cCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH---hcceeeccCChhheeeccCCCeEeecc
Confidence 167788999999988876 3356888888889999999999999 778999999999999999999999999
Q ss_pred cccccccccC
Q 041082 521 GMAKLLLKED 530 (639)
Q Consensus 521 gla~~~~~~~ 530 (639)
|+|.-+.++.
T Consensus 332 GLAvei~~g~ 341 (591)
T KOG0986|consen 332 GLAVEIPEGK 341 (591)
T ss_pred ceEEecCCCC
Confidence 9998776554
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=130.86 Aligned_cols=117 Identities=26% Similarity=0.367 Sum_probs=87.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh---hhhHHHHHHHH--------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA---FKSFDVACDMM--------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~---~~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~~ 462 (639)
.+||.||.+.-. .|..+|+|++.-+..-. ......|-.++ -+|||||+++|++..+
T Consensus 152 GAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTL 231 (550)
T KOG0605|consen 152 GAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTL 231 (550)
T ss_pred ccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHH
Confidence 569999999865 58999999997664322 22233333332 1489999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|-..+ .|+.....-++...+-|++-+| ..+++||||||.|+|+|..|++|++||||+.-+.
T Consensus 232 L~~~~-~L~e~~arfYiaE~vlAI~~iH---~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~ 292 (550)
T KOG0605|consen 232 LMRKD-TLTEDWARFYIAETVLAIESIH---QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLD 292 (550)
T ss_pred HHhcC-cCchHHHHHHHHHHHHHHHHHH---HcCcccccCChhheeecCCCCEeeccccccchhh
Confidence 86533 3433333445666778999999 8899999999999999999999999999986543
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-13 Score=124.60 Aligned_cols=200 Identities=22% Similarity=0.242 Sum_probs=116.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCCchh--
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGSLEK-- 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~-- 461 (639)
..||+|+|... +.|+..|||+++.... ...+.+..+.+.... +-||.|.- |+..
T Consensus 75 G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~-SlDklY 153 (361)
T KOG1006|consen 75 GAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDI-SLDKLY 153 (361)
T ss_pred CcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhh-hHHHHH
Confidence 45889998875 5689999999976543 223334333333110 22444432 3322
Q ss_pred -cccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----c--
Q 041082 462 -CLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----F-- 533 (639)
Q Consensus 462 -~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~-- 533 (639)
.++. ....+...-.-+|+..+.+||.||-. ...|+|||+||+|||+|..+.+|+||||+...+..+-.. .
T Consensus 154 k~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCr 231 (361)
T KOG1006|consen 154 KRVYSVQKSRIPENILGHITVATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCR 231 (361)
T ss_pred HHHHHHHhccCcHhhhhheeeeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCc
Confidence 2222 12234555556677777899999986 467999999999999999999999999998766432110 0
Q ss_pred ----cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 ----TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 ----~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+. .....++||| | ||+-|+.. | .++.+-+.+.+.. ||.+.... ...-
T Consensus 232 pYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~-w---~svfeql~~Vv~g------dpp~l~~~----~~~~ 297 (361)
T KOG1006|consen 232 PYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRK-W---DSVFEQLCQVVIG------DPPILLFD----KECV 297 (361)
T ss_pred cccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcch-H---HHHHHHHHHHHcC------CCCeecCc----cccc
Confidence 00 0112367777 6 77777642 1 1111112221111 22221110 0001
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.-..+.+..-.|+-.+-+.||...+..+
T Consensus 298 ~~s~~~~~fintCl~Kd~~~Rpky~~Lk~ 326 (361)
T KOG1006|consen 298 HYSFSMVRFINTCLIKDRSDRPKYDDLKK 326 (361)
T ss_pred ccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence 12345666677999999999999887654
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=113.89 Aligned_cols=201 Identities=17% Similarity=0.172 Sum_probs=128.1
Q ss_pred cCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHH--------------------H--HhhhhhcCCCCCchhcccc
Q 041082 409 FGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDM--------------------M--KKLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 409 ~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~--------------------~--~~Lv~ey~~~gsL~~~l~~ 465 (639)
||.+..+..+ ....+++|.+..... ..++|..|... + -.+++||+|.|+|.+-+..
T Consensus 37 FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~ 115 (378)
T KOG1345|consen 37 FGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEA 115 (378)
T ss_pred eeeEEeeeccCCceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCc
Confidence 6666666654 346677776643322 23445544332 0 1257899999999988754
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeeccccccccccccCC--------Cccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAKLLLKEDQ--------SFTQ 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla~~~~~~~~--------~~~~ 535 (639)
..+......+++.+++.|+.||| +..+||||||..|||+- ++.++|+||||+.+..+.... +.+.
T Consensus 116 --~GigE~~~K~v~~ql~SAi~fMH---sknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe 190 (378)
T KOG1345|consen 116 --AGIGEANTKKVFAQLLSAIEFMH---SKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPE 190 (378)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhh---ccchhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcH
Confidence 33666777889999999999999 78899999999999993 456899999999886543210 0000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...-...|+| | ||+.|-..........++|....-.... --|+.... --
T Consensus 191 ~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~---~~P~~F~~----------fs 257 (378)
T KOG1345|consen 191 LCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNP---ALPKKFNP----------FS 257 (378)
T ss_pred HHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCc---cCchhhcc----------cC
Confidence 0111257888 7 9999977555556667777654322211 01111110 11
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+++++..+-..++|++|-...++..+....
T Consensus 258 ~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~ 288 (378)
T KOG1345|consen 258 EKALRLFKKSLTPRFKDRCKIWTAKKMRKCL 288 (378)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHHHH
Confidence 2345555678889999998777777665443
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-12 Score=127.29 Aligned_cols=191 Identities=23% Similarity=0.254 Sum_probs=117.6
Q ss_pred CCceeeeEEechhhhh--hhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccCCccCCHHHHH
Q 041082 419 DGMKVAVKVFDLQYER--AFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSSNYILDIFQRL 476 (639)
Q Consensus 419 ~g~~vavK~l~~~~~~--~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~~~~l~~~~~~ 476 (639)
.|..||||+++..... ....+..|+..|+. ||.|.-.+|+|++++-.....+...-..
T Consensus 42 TGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~ 121 (864)
T KOG4717|consen 42 TGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAK 121 (864)
T ss_pred ccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHH
Confidence 5789999999754322 22344556666553 5667777899999986655667777788
Q ss_pred HHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCcccc---cccc----ccccccCC
Q 041082 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSFTQN---TNTC----HHRIYGTR 548 (639)
Q Consensus 477 ~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~~~~---~~~~----~~dvyGtg 548 (639)
+++.||..|+.|.| +..||||||||.||+.-+ -+-+|+.|||++.-+.++..-.+.. +.++ -+|-|
T Consensus 122 kYF~QI~~AI~YCH---qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsY--- 195 (864)
T KOG4717|consen 122 KYFAQIVHAISYCH---QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSY--- 195 (864)
T ss_pred HHHHHHHHHHHHHh---hhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCcc---
Confidence 99999999999999 788999999999998864 6789999999997665543211110 0010 11222
Q ss_pred CCCCCccCCCccchHHHHHhhCCCC-------cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 041082 549 RNPQMNFFSGEMTLKSWVNDLLPIS-------VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKES 621 (639)
Q Consensus 549 ~~p~~~~~~~~~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v 621 (639)
-.|.-++|+-|+.|.-.|-...|.. +.-++|-.. +.+.-...+.-+|+.+.+..+|++|-+..||
T Consensus 196 DAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKY--------tvPshvS~eCrdLI~sMLvRdPkkRAslEeI 267 (864)
T KOG4717|consen 196 DAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKY--------TVPSHVSKECRDLIQSMLVRDPKKRASLEEI 267 (864)
T ss_pred CCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccc--------cCchhhhHHHHHHHHHHHhcCchhhccHHHH
Confidence 0122223333333322221111110 112222211 1122223344567788899999999999998
Q ss_pred HH
Q 041082 622 VT 623 (639)
Q Consensus 622 ~~ 623 (639)
+.
T Consensus 268 ~s 269 (864)
T KOG4717|consen 268 VS 269 (864)
T ss_pred hc
Confidence 74
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-12 Score=117.95 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=67.5
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
++|+++++. +|+..|......++.....++..+...||.|+| ...|+|||+|+.|||+++++..|++|||+||.+.
T Consensus 100 ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH---r~kilHRDmKaaNvLIt~dgilklADFGlar~fs 175 (376)
T KOG0669|consen 100 YLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH---RNKILHRDMKAANVLITKDGILKLADFGLARAFS 175 (376)
T ss_pred eeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHH---HhhHHhhcccHhhEEEcCCceEEeecccccccee
Confidence 378888876 788877655566888899999999999999999 8889999999999999999999999999997664
Q ss_pred c
Q 041082 528 K 528 (639)
Q Consensus 528 ~ 528 (639)
.
T Consensus 176 ~ 176 (376)
T KOG0669|consen 176 T 176 (376)
T ss_pred c
Confidence 3
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-12 Score=129.16 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCcCcceEEEec--CCceeeeEEechh-----hhhhhhhHHHHHHHHH-----------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ--DGMKVAVKVFDLQ-----YERAFKSFDVACDMMK-----------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g~~vavK~l~~~-----~~~~~~~f~~e~~~~~-----------------~Lv~ey~~~gsL~~~ 462 (639)
.+||.||++... ++..+|||++... .......|..|++.++ .+||||+++++|...
T Consensus 29 G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~LVmE~~~G~~L~~~ 108 (365)
T PRK09188 29 DVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGLVRGWTEGVPLHLA 108 (365)
T ss_pred cCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEEEEEccCCCCHHHh
Confidence 568999999864 5677899986532 1122345777777744 367899999988632
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecC-CCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL-KLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dl-k~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
... . ...++.++++||+|+| ..+|+|||| ||+||+++.++.+||+|||+|+.+..
T Consensus 109 -~~~----~---~~~~~~~i~~aL~~lH---~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~ 164 (365)
T PRK09188 109 -RPH----G---DPAWFRSAHRALRDLH---RAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRR 164 (365)
T ss_pred -Ccc----c---hHHHHHHHHHHHHHHH---HCCCeeCCCCCcceEEEcCCCCEEEEECccceeccc
Confidence 111 1 1457788999999999 678999999 99999999999999999999997654
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-12 Score=140.96 Aligned_cols=118 Identities=33% Similarity=0.470 Sum_probs=94.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..++..++ ++||||+++|+|.++
T Consensus 15 G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~l 94 (669)
T cd05610 15 GAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSL 94 (669)
T ss_pred CCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHH
Confidence 468899999875 678999999864321 12234555554432 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+... ..+++....+|+.+|+.||+||| ..+|+||||||+|||++.++.+||+|||+++....
T Consensus 95 i~~~-~~l~~~~~~~i~~qil~aL~yLH---~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~ 156 (669)
T cd05610 95 LHIY-GYFDEEMAVKYISEVALALDYLH---RHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN 156 (669)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccC
Confidence 8643 34788888999999999999999 56899999999999999999999999999987643
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=115.98 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=86.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh--------------------------hhhHHHHHHHHH-------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA--------------------------FKSFDVACDMMK------------- 447 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~--------------------------~~~f~~e~~~~~------------- 447 (639)
.++|.||++...+|..+|||+++...... ...+..|...+.
T Consensus 8 G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~ 87 (190)
T cd05145 8 GKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPVPEPI 87 (190)
T ss_pred CCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCCCceEE
Confidence 45789999998789999999987542110 001122232221
Q ss_pred -----hhhhhcCCCCCchhc-cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 448 -----KLVLEYMPHGSLEKC-LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 448 -----~Lv~ey~~~gsL~~~-l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
.+||||++++++... +. ...++.....+++.+++.++.|+|+ ..+|+||||||.||+++ ++.+++.|||
T Consensus 88 ~~~~~~lVmE~~~g~~~~~~~l~--~~~~~~~~~~~i~~~l~~~l~~lH~--~~givHrDlkP~NIll~-~~~~~liDFG 162 (190)
T cd05145 88 LLKKNVLVMEFIGDDGSPAPRLK--DVPLEEEEAEELYEQVVEQMRRLYQ--EAGLVHGDLSEYNILYH-DGKPYIIDVS 162 (190)
T ss_pred EecCCEEEEEEecCCCchhhhhh--hccCCHHHHHHHHHHHHHHHHHHHH--hCCEecCCCChhhEEEE-CCCEEEEEcc
Confidence 378999998755432 32 2346777888999999999999994 16899999999999999 8999999999
Q ss_pred ccccccc
Q 041082 522 MAKLLLK 528 (639)
Q Consensus 522 la~~~~~ 528 (639)
+|+....
T Consensus 163 ~a~~~~~ 169 (190)
T cd05145 163 QAVELDH 169 (190)
T ss_pred cceecCC
Confidence 9986643
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-12 Score=127.21 Aligned_cols=118 Identities=30% Similarity=0.457 Sum_probs=87.5
Q ss_pred cCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc-cc
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC-LY 464 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~-l~ 464 (639)
||.||-|.. ..|+.||||+++... .....+...|+.++.. +|||-+.+ +.-+. |.
T Consensus 577 FG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G-DMLEMILS 655 (888)
T KOG4236|consen 577 FGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG-DMLEMILS 655 (888)
T ss_pred ceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc-hHHHHHHH
Confidence 899998875 478999999987543 2233566777777432 46777744 44444 33
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccC
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~ 530 (639)
.+...|....-.-++.||..||.||| -.+|+|+||||.||||.. ...+|+||||+||++++..
T Consensus 656 sEkgRL~er~TkFlvtQIL~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks 721 (888)
T KOG4236|consen 656 SEKGRLPERITKFLVTQILVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS 721 (888)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence 34445666555667789999999999 567999999999999964 4679999999999998654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-13 Score=136.05 Aligned_cols=133 Identities=31% Similarity=0.423 Sum_probs=83.9
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.++--...||+.|++. .+|..+..+..|..+.|++|.+- .+|..+.++..|++|+|+.|+++ ..|..+..|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l------ 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL------ 143 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC------
Confidence 3444556677777776 56666666666666666666653 45666666666666666666665 444444443
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCC
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
-|+.|.+++|+++ .+|..++.+..|..||.+.|.+... |..++.+.+|+.|.+..|++...+
T Consensus 144 -------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 144 -------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred -------------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCC
Confidence 2445555555554 5566666667777777777777544 445677777777777777766543
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=121.11 Aligned_cols=116 Identities=28% Similarity=0.361 Sum_probs=91.2
Q ss_pred CcCcceEEEecC-CceeeeEEechhhhhhhhhH---HHHHHHH--------------------HhhhhhcCCCCCchhcc
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYERAFKSF---DVACDMM--------------------KKLVLEYMPHGSLEKCL 463 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f---~~e~~~~--------------------~~Lv~ey~~~gsL~~~l 463 (639)
..|+||.+.+.+ +...|+|+++.......+.. ..|.+++ ..|+|||+++|+|..+.
T Consensus 89 diG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~Lr 168 (459)
T KOG0610|consen 89 DIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLR 168 (459)
T ss_pred CceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHH
Confidence 478999999876 48899999986654332222 2233332 23799999999999888
Q ss_pred cc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 464 YS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 464 ~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+. ....++.....-+|..|.-||+||| ..+||.|||||.|||+.+++.+-++||-|+...
T Consensus 169 qkQp~~~fse~~aRFYaAEvl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~ 229 (459)
T KOG0610|consen 169 QKQPGKRFSESAARFYAAEVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRC 229 (459)
T ss_pred hhCCCCccchhhHHHHHHHHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccC
Confidence 76 3456777666668888999999999 889999999999999999999999999887654
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-12 Score=120.75 Aligned_cols=202 Identities=21% Similarity=0.323 Sum_probs=130.7
Q ss_pred cCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccC
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~ 466 (639)
.|..|+|+++++ .+.+|++.... .+..++|..|+..++. ++..||+-|||+..||+.
T Consensus 203 sgelwrgrwqgn-divakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~ 281 (448)
T KOG0195|consen 203 SGELWRGRWQGN-DIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQ 281 (448)
T ss_pred CcccccccccCc-chhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcC
Confidence 578999999865 34456554432 3445677777655321 567899999999999983
Q ss_pred -CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeec--cccccccccccCCCccccccccccc
Q 041082 467 -NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLS--DFGMAKLLLKEDQSFTQNTNTCHHR 543 (639)
Q Consensus 467 -~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~--dfgla~~~~~~~~~~~~~~~~~~~d 543 (639)
...++-.+.+++|.++|+|++|||+- .|-|..--+.+..|.+|++.++||+ |--++.+. ++.
T Consensus 282 t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfqe--------------~gr 346 (448)
T KOG0195|consen 282 TSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQE--------------VGR 346 (448)
T ss_pred ccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeeec--------------ccc
Confidence 45678889999999999999999953 6677788899999999999999986 22222111 122
Q ss_pred cc-----c---CCCCCCC------ccCCCccchHHHHHhhCCCC---ccee-eeccccccccccccchHHHHHHHHHHHh
Q 041082 544 IY-----G---TRRNPQM------NFFSGEMTLKSWVNDLLPIS---VMEV-VDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 544 vy-----G---tg~~p~~------~~~~~~~~l~~~~~~~~~~~---~~~~-~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
+| . -.++|-+ ++++...-||+.++..+|.. -+|+ .--.+. +-+...++.....+.+++-
T Consensus 347 ~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkiale---glrv~ippgis~hm~klm~ 423 (448)
T KOG0195|consen 347 AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALE---GLRVHIPPGISRHMNKLMN 423 (448)
T ss_pred ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhc---cccccCCCCccHHHHHHHH
Confidence 22 0 1222222 23344455555554444432 1111 000000 0112233444556778888
Q ss_pred hccCCCCCCCCCHHHHHHHHHHhH
Q 041082 606 ECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
-|..++|.+||.+..|+-.||++.
T Consensus 424 icmnedpgkrpkfdmivpilekm~ 447 (448)
T KOG0195|consen 424 ICMNEDPGKRPKFDMIVPILEKMI 447 (448)
T ss_pred HHhcCCCCcCCCcceehhhHHHhc
Confidence 999999999999999999998764
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=124.88 Aligned_cols=167 Identities=27% Similarity=0.310 Sum_probs=113.8
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.|.+|++.|+|.+.+......+||.-......+++.||+|+|+ ++--.|+.++++|.++|..+.+|++|||+..+..+
T Consensus 24 ~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~--s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~ 101 (484)
T KOG1023|consen 24 VIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHN--SPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEE 101 (484)
T ss_pred EEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhc--CcceeeeeeccccceeeeeEEEEechhhhcccccc
Confidence 5678999999999998766779999999999999999999994 33339999999999999999999999999987742
Q ss_pred cC----CC---------c-----------cccccccccccc--c-------CCCCCCCccCCCc--cchHHHHHhhCCCC
Q 041082 529 ED----QS---------F-----------TQNTNTCHHRIY--G-------TRRNPQMNFFSGE--MTLKSWVNDLLPIS 573 (639)
Q Consensus 529 ~~----~~---------~-----------~~~~~~~~~dvy--G-------tg~~p~~~~~~~~--~~l~~~~~~~~~~~ 573 (639)
.. .. . .....+.++|+| | +.+.|.+...... ..+..+++. .
T Consensus 102 ~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~----~ 177 (484)
T KOG1023|consen 102 TAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKK----G 177 (484)
T ss_pred cccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHh----c
Confidence 10 00 0 001134467777 4 4555554322211 123333332 1
Q ss_pred cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 574 VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 574 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
....+=|.+.. ..+....++.++..||.++|++||++.+|-..++.+.
T Consensus 178 ~~~~~rP~i~~--------~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~ 225 (484)
T KOG1023|consen 178 GSNPFRPSIEL--------LNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTIN 225 (484)
T ss_pred CCCCcCcchhh--------hhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhc
Confidence 11112122111 0123336888999999999999999999988777654
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-11 Score=133.40 Aligned_cols=116 Identities=30% Similarity=0.389 Sum_probs=85.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
++||.|...++. .+..+|.|+++-... .....|..|-++|. ++|||||+||+|-.+
T Consensus 86 GaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltL 165 (1317)
T KOG0612|consen 86 GAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTL 165 (1317)
T ss_pred cccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccCchHHHH
Confidence 458888887764 468889998865321 11234555544422 489999999999998
Q ss_pred cccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 463 LYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 463 l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+.... .+=+|+ |+ ++..|.-||.-+| ..+.|||||||.|||+|.+|++|++|||-..-+.
T Consensus 166 lSk~~~~pE~~A-rF-Y~aEiVlAldslH---~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~ 226 (1317)
T KOG0612|consen 166 LSKFDRLPEDWA-RF-YTAEIVLALDSLH---SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMD 226 (1317)
T ss_pred HhhcCCChHHHH-HH-HHHHHHHHHHHHH---hccceeccCCcceeEecccCcEeeccchhHHhcC
Confidence 87644 223555 33 4556778999999 8899999999999999999999999999554444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-11 Score=131.31 Aligned_cols=108 Identities=31% Similarity=0.423 Sum_probs=82.9
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47788999999999999999999999999999999998899889999999999999999988888888877666665555
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCC-CCCcEEEcccCCC
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSF 202 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l 202 (639)
+|. ++|.+|..+... .++..+++.+|..
T Consensus 499 ~N~------------------l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNS------------------LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCc------------------ccccCChHHhhccccCceEEecCCcc
Confidence 544 445566655432 3445566666543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-12 Score=134.37 Aligned_cols=170 Identities=27% Similarity=0.406 Sum_probs=147.8
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
.+..||+.|.+. .+|..+..+..|+.|.|..|.+. .+|..+.++..|+.|+|+.|+++ .+|..+..|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 456788888886 68988999999999999999998 79999999999999999999986 5788888888 99999999
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCCC-----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
|+++ .+|..++.+..|..||.+.|.+..++ +.+|+.|.+..|++.. +|..+..+ .|..||++.|++.. +|-
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~-iPv 228 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISY-LPV 228 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceee-cch
Confidence 9997 77888999999999999999998753 6788899999999984 55555544 68999999999974 588
Q ss_pred ccCCCCCCCEEEccCCCCCCCCC
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
.|.+|+.|++|-|.+|.+.+.+.
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhhhhhheeeeeccCCCCCChH
Confidence 89999999999999999987543
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-11 Score=111.74 Aligned_cols=119 Identities=25% Similarity=0.397 Sum_probs=84.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHH-------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMM-------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gs 458 (639)
..||.||..+- ++|..+++|++..-.. -..+.+-.+..++ -+++.|.|.. +
T Consensus 64 GAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQS-D 142 (449)
T KOG0664|consen 64 GAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQS-D 142 (449)
T ss_pred cceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHh-h
Confidence 34788886664 5789999998753221 1223333444441 2345566654 6
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
|.+.+-+ ...++-....-+..+|.|||.||| +.+|+||||||-|.|++.+...||+|||+||....++
T Consensus 143 LHKIIVS-PQ~Ls~DHvKVFlYQILRGLKYLH---sA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~ 210 (449)
T KOG0664|consen 143 LHKIIVS-PQALTPDHVKVFVYQILRGLKYLH---TANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD 210 (449)
T ss_pred hhheecc-CCCCCcchhhhhHHHHHhhhHHHh---hcchhhccCCCccEEeccCceEEecccccccccchhh
Confidence 6655543 334665555667789999999999 7789999999999999999999999999999876544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9e-11 Score=124.70 Aligned_cols=193 Identities=35% Similarity=0.510 Sum_probs=125.7
Q ss_pred EEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCC-CCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLA-ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 80 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
.|+++.|.+.. .+..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 57777777642 3345556677888888888876 4555566664 7888888888886 44566778888888888888
Q ss_pred CCCCC-----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 159 NLTDV-----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 159 ~l~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
.++.+ .+++|+.|++++|+++ .+|........|+++.+++|.... .+..+.++.++..+.+.+|++...
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~---- 247 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL---- 247 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec----
Confidence 87763 4677888888888887 455554556668888888885432 344577777888887777766531
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
+..++.+++++.|++++|.++.. +. +..+.+++.|++++|.+...
T Consensus 248 ---------------------------------~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 ---------------------------------PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------------------------------cchhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 12233444555566666655532 22 55555666666666665544
Q ss_pred Cch
Q 041082 314 IPY 316 (639)
Q Consensus 314 ~p~ 316 (639)
+|.
T Consensus 293 ~~~ 295 (394)
T COG4886 293 LPL 295 (394)
T ss_pred chh
Confidence 443
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-11 Score=113.81 Aligned_cols=113 Identities=27% Similarity=0.337 Sum_probs=88.3
Q ss_pred cCcceEE-EecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccccC
Q 041082 409 FGSIYKA-RIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 409 ~g~vy~~-~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
+++|.-+ .+..|..+|||+++..........-+|++++. +||+|-|.+|+|-.+++.
T Consensus 91 yasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~- 169 (463)
T KOG0607|consen 91 YASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQK- 169 (463)
T ss_pred ceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchHHHHHHH-
Confidence 4444433 36778999999998775555555556666632 489999999999988875
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC---cceeecccccccc
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN---MVAHLSDFGMAKL 525 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~---~~~~i~dfgla~~ 525 (639)
.+.++.....+++.+||.||.||| ..+|.|||+||.|||-.+- -.+||+||-++.-
T Consensus 170 ~~~F~E~EAs~vvkdia~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg 228 (463)
T KOG0607|consen 170 RKHFNEREASRVVKDIASALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLGSG 228 (463)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccccc
Confidence 345778788899999999999999 7889999999999999653 3479999977654
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-11 Score=124.91 Aligned_cols=117 Identities=31% Similarity=0.442 Sum_probs=91.2
Q ss_pred CcCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 408 g~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.+|.|||++ .+.+...|+|++++.-...+.....|+.+++ -+.|||+.+|+|.+.-|.
T Consensus 27 TygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~- 105 (829)
T KOG0576|consen 27 TYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHV- 105 (829)
T ss_pred cccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeee-
Confidence 378899987 4678999999998765433333333332211 146999999999887653
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
-..++..+..-++....+|++|+| +..-+|||||-.||++.+.+.+|++|||.+..++.
T Consensus 106 TgplselqiayvcRetl~gl~ylh---s~gk~hRdiKGanilltd~gDvklaDfgvsaqita 164 (829)
T KOG0576|consen 106 TGPLSELQIAYVCRETLQGLKYLH---SQGKIHRDIKGANILLTDEGDVKLADFGVSAQITA 164 (829)
T ss_pred cccchhHHHHHHHhhhhccchhhh---cCCcccccccccceeecccCceeecccCchhhhhh
Confidence 235788888888899999999999 66779999999999999999999999999877653
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=110.30 Aligned_cols=120 Identities=35% Similarity=0.487 Sum_probs=96.9
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+++.+|++.... +..+++|.+...... ..+.+..+++..+ .+++||+++++|.+++.
T Consensus 10 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~ 89 (225)
T smart00221 10 GAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLR 89 (225)
T ss_pred CCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHH
Confidence 4578899998875 789999998765443 4455555655422 26789999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
.....+++.....++.++++++.|+| ..+++|+|+++.||+++.++.++++|||.+......
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~ 151 (225)
T smart00221 90 KKGGKLSEEEARFYLRQILEALEYLH---SLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRD 151 (225)
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCc
Confidence 53333889999999999999999999 558999999999999999999999999999876543
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=110.62 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=83.9
Q ss_pred CCcCcceEEE--ecCCceeeeEEechhhhh------------------------hhhhHHHHHHHH--------------
Q 041082 407 SGFGSIYKAR--IQDGMKVAVKVFDLQYER------------------------AFKSFDVACDMM-------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~--l~~g~~vavK~l~~~~~~------------------------~~~~f~~e~~~~-------------- 446 (639)
.++|.||++. ..+|..+|+|.+...... ....+..|...+
T Consensus 39 G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i~~p~~~ 118 (237)
T smart00090 39 GKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGVPVPKPI 118 (237)
T ss_pred CcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Confidence 4578999998 678999999998754210 001122333332
Q ss_pred ----HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCC-eEeecCCCCceeecCCcceeecccc
Q 041082 447 ----KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP-IIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 447 ----~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~-i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
..+||||++++++....... ..++..+...++.+++.+++|+| ..+ |+||||||.||+++ ++++++.|||
T Consensus 119 ~~~~~~lV~E~~~g~~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~g~iiH~Dikp~NIli~-~~~i~LiDFg 193 (237)
T smart00090 119 AWRRNVLVMEFIGGDGLPAPRLKD-VEPEEEEEFELYDDILEEMRKLY---KEGELVHGDLSEYNILVH-DGKVVIIDVS 193 (237)
T ss_pred EecCceEEEEEecCCccccccccc-CCcchHHHHHHHHHHHHHHHHHH---hcCCEEeCCCChhhEEEE-CCCEEEEECh
Confidence 23788999998886654221 23445556789999999999999 666 99999999999999 8899999999
Q ss_pred ccccc
Q 041082 522 MAKLL 526 (639)
Q Consensus 522 la~~~ 526 (639)
.|...
T Consensus 194 ~a~~~ 198 (237)
T smart00090 194 QSVEL 198 (237)
T ss_pred hhhcc
Confidence 98854
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-10 Score=121.87 Aligned_cols=195 Identities=33% Similarity=0.414 Sum_probs=142.0
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.+++..+.+... ...+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466776666432 233556678888888888888 6777777775 8899999988876 45567888888999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCC----C-CCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----I-PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
+++ .+|.....+++|+.|++++|.++.++ . ..|+.|.+++|.+. ..+..+.++.++..+.+.+|++... +..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cch
Confidence 887 45555557888888999999888754 2 34888888888533 4556677788888888888887653 556
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhh
Q 041082 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI 270 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~ 270 (639)
++.++.++.|++++|.++.... +. ...+++.++++++.+....+...
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~-------~~-------~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS-------LG-------SLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hccccccceecccccccccccc-------cc-------ccCccCEEeccCccccccchhhh
Confidence 7788888899998888876532 11 12367788888888877666544
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-10 Score=116.44 Aligned_cols=121 Identities=26% Similarity=0.312 Sum_probs=84.3
Q ss_pred CCCcCcceEEEecCCc-eeeeEEechhhh---hhhhhHHHHHHHH--------------------HhhhhhcCCCCCchh
Q 041082 406 FSGFGSIYKARIQDGM-KVAVKVFDLQYE---RAFKSFDVACDMM--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 406 l~g~g~vy~~~l~~g~-~vavK~l~~~~~---~~~~~f~~e~~~~--------------------~~Lv~ey~~~gsL~~ 461 (639)
..|||.|-........ ..|+|.+...+. ......-.|-.+| -++.||-+-+|.+-.
T Consensus 430 vGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWT 509 (732)
T KOG0614|consen 430 VGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWT 509 (732)
T ss_pred cCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhh
Confidence 4678888766654332 367776654331 1111222222221 134567777888888
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.|+... .++-.+..-++..+.+|++||| ..+||.|||||.|.+||.++.+|+.|||+|+.+..+.
T Consensus 510 iLrdRg-~Fdd~tarF~~acv~EAfeYLH---~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~ 574 (732)
T KOG0614|consen 510 ILRDRG-SFDDYTARFYVACVLEAFEYLH---RKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR 574 (732)
T ss_pred hhhhcC-CcccchhhhhHHHHHHHHHHHH---hcCceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence 776533 4555555557778999999999 8899999999999999999999999999999987654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-10 Score=106.02 Aligned_cols=86 Identities=31% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCCCCCEEeccCCcCCccCCcccc-CCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccc-cCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSI-FNLSS 149 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~ 149 (639)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.+... +.+..++.|++|+|++|+++.. ++.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 3444566777777777763 3 2444 466777777777777643 2466677777777777777643 2233 35677
Q ss_pred CCEEecCCCCCCC
Q 041082 150 LSDLDLSHNNLTD 162 (639)
Q Consensus 150 L~~L~Ls~N~l~~ 162 (639)
|++|+|++|+|..
T Consensus 90 L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 90 LQELYLSNNKISD 102 (175)
T ss_dssp --EEE-TTS---S
T ss_pred CCEEECcCCcCCC
Confidence 7777777777665
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-10 Score=104.74 Aligned_cols=105 Identities=28% Similarity=0.433 Sum_probs=41.6
Q ss_pred cEEEEEeCCCCCcccCCcCCC-CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccc-cCCCCCcEEe
Q 041082 53 RVTTLNISGLSLTSTIPSELG-NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEEL-GNLAELETLW 130 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~ 130 (639)
+++.|+|.+|.++.+ ..++ .+.+|+.|+|++|.|+. ++ .+..++.|++|++++|+++.. ++.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 568899999999753 3465 68899999999999985 43 688899999999999999864 4444 4689999999
Q ss_pred cccccCccccC-ccccCCCCCCEEecCCCCCCC
Q 041082 131 LQNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 131 L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|++|+|...-. ..+..+++|+.|+|.+|.++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999975322 346677888888888887764
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-10 Score=105.90 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh----------------------hhhHHHHHHHH------------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA----------------------FKSFDVACDMM------------------ 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~----------------------~~~f~~e~~~~------------------ 446 (639)
.++|.||++...+|..++||++....... ...+..|...+
T Consensus 26 G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~~~~~~~~ 105 (198)
T cd05144 26 GKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVPKPIDWNR 105 (198)
T ss_pred CcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCCceeecCC
Confidence 45788999998889999999876432100 00112222221
Q ss_pred HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 447 ~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
..+||||++++++...... .....++.+++.++.++| ..+|+||||||.||++++++.++++|||++.-.
T Consensus 106 ~~lv~e~~~g~~L~~~~~~-------~~~~~~~~~i~~~l~~lh---~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~ 175 (198)
T cd05144 106 HAVVMEYIDGVELYRVRVL-------EDPEEVLDEILEEIVKAY---KHGIIHGDLSEFNILVDDDEKIYIIDWPQMVST 175 (198)
T ss_pred ceEEEEEeCCcchhhcccc-------ccHHHHHHHHHHHHHHHH---HCCCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence 1357888888888665321 223568889999999999 578999999999999999999999999999654
Q ss_pred c
Q 041082 527 L 527 (639)
Q Consensus 527 ~ 527 (639)
.
T Consensus 176 ~ 176 (198)
T cd05144 176 D 176 (198)
T ss_pred C
Confidence 4
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-11 Score=112.17 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=85.0
Q ss_pred cEEEEEeCCCC--------CcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCC
Q 041082 53 RVTTLNISGLS--------LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLA 124 (639)
Q Consensus 53 ~v~~L~L~~~~--------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 124 (639)
++..|..++.. +...+|-.+.-+++|+++.+|.+.-.. |-.-...-+.|+++...+..+. ..|. +--++
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~ 259 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQ-DVPS-LLPET 259 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccc-cccc-ccchh
Confidence 56677666531 122344455566777777777664331 1111122244555555443322 1111 11111
Q ss_pred CCcEEeccc-ccCccccCccccCCCCCCEEecCCCCCCCCC-----CCCccEEEccCCccCccCCccccCCCCCcEEEcc
Q 041082 125 ELETLWLQN-NFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQ 198 (639)
Q Consensus 125 ~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 198 (639)
.+..++-+. .-..|..-..+.....|++||||+|.|+.+. +|.++.|++|.|.+... ..+..+++|+.||||
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLS 337 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecc
Confidence 111111110 1112222223334455666677777666542 56667777777766522 125566777777777
Q ss_pred cCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 199 KNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
+|.++... .+-..+.+++.|.|+.|.+..
T Consensus 338 ~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 338 GNLLAECV-GWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred cchhHhhh-hhHhhhcCEeeeehhhhhHhh
Confidence 77775442 344466677777777776643
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=99.69 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=78.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh----hhhHHHHHHHHHh-----------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA----FKSFDVACDMMKK-----------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~----~~~f~~e~~~~~~-----------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||...- ++..+..+.+....... ..-+..|+++++. ++|+|+.+.+|......
T Consensus 13 ~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~~L~~~~~~ 91 (218)
T PRK12274 13 DTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGAAMYQRPPR 91 (218)
T ss_pred CCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCccHHhhhhh
Confidence 56888986555 56666666665443211 1135667777543 56788888787654321
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecC-CCCceeecCCcceeecccccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL-KLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dl-k~~nill~~~~~~~i~dfgla~~~~ 527 (639)
....++.+++++++|+| ..+|+|||| |+.||+++.++.++|.|||+|....
T Consensus 92 --------~~~~~~~qi~~~L~~lH---~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~ 143 (218)
T PRK12274 92 --------GDLAYFRAARRLLQQLH---RCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGN 143 (218)
T ss_pred --------hhHHHHHHHHHHHHHHH---HCcCccCCCCCcceEEEcCCCCEEEEECCCceecC
Confidence 12356778899999999 778999999 7999999999999999999998543
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-09 Score=102.85 Aligned_cols=109 Identities=27% Similarity=0.360 Sum_probs=80.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh--------hhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER--------AFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~--------~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
+++|.||++.. .|..+++|........ ....+..|+..+. .++|||+++++
T Consensus 7 G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~ 85 (211)
T PRK14879 7 GAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEP 85 (211)
T ss_pred CceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEeCCcC
Confidence 35788999987 5667888875422110 0112333333321 26789999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
|.+++... .+ .+..++.+++.+++++| ..+++|||++|.||+++ ++.+++.|||+++.
T Consensus 86 L~~~~~~~----~~-~~~~i~~~i~~~l~~lH---~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~ 143 (211)
T PRK14879 86 LKDLINSN----GM-EELELSREIGRLVGKLH---SAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF 143 (211)
T ss_pred HHHHHHhc----cH-HHHHHHHHHHHHHHHHH---hCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence 98887532 23 78899999999999999 67899999999999999 78899999999874
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-09 Score=104.34 Aligned_cols=116 Identities=23% Similarity=0.281 Sum_probs=83.4
Q ss_pred HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 447 ~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.++|+|||.. ++...++- .+|=.+...|..|+.+|+.||| +.+|+||||||+||++..+...||.|||+|+-.
T Consensus 96 ~y~v~e~m~~-nl~~vi~~---elDH~tis~i~yq~~~~ik~lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e 168 (369)
T KOG0665|consen 96 VYLVMELMDA-NLCQVILM---ELDHETISYILYQMLCGIKHLH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTE 168 (369)
T ss_pred HHHHHHhhhh-HHHHHHHH---hcchHHHHHHHHHHHHHHHHHH---hcceeecccCcccceecchhheeeccchhhccc
Confidence 4689999964 78776652 3566777889999999999999 788999999999999999999999999999865
Q ss_pred cccCCCcccccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhC
Q 041082 527 LKEDQSFTQNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLL 570 (639)
Q Consensus 527 ~~~~~~~~~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~ 570 (639)
..+ ...+..+.+. ...|- |+|-++.-++++.|..+.+.++..+
T Consensus 169 ~~~-~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~V 215 (369)
T KOG0665|consen 169 DTD-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTV 215 (369)
T ss_pred Ccc-cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceE
Confidence 433 1111111111 11111 5666666677777777777665433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-10 Score=112.73 Aligned_cols=208 Identities=23% Similarity=0.237 Sum_probs=119.8
Q ss_pred CCCCCCEEeccCCcCCccCC--ccccCCcccceeeccCCcCCCCCC--ccccCCCCCcEEecccccCccccCcc-ccCCC
Q 041082 74 NLSSLQTLDLSFNWFSGSIP--SSIFNMSSLLSIYFNNNTLFGEIP--EELGNLAELETLWLQNNFLTGTIHSS-IFNLS 148 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~ 148 (639)
++++|+...|.+.... ..+ .-...+++++.||||+|-+..--| .-...||+|+.|+|+.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5667777777766654 222 244567777777777776654322 22346777777777777775333221 12456
Q ss_pred CCCEEecCCCCCCC-------CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEE
Q 041082 149 SLSDLDLSHNNLTD-------VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLN 220 (639)
Q Consensus 149 ~L~~L~Ls~N~l~~-------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ 220 (639)
+|+.|.|+.+.|+. ...|+|+.|+|..|...+........+..|+.|||++|++..... ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 67777777777764 236777777777775322222223345567777777776644321 2345666667776
Q ss_pred ccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc--ccccCCc
Q 041082 221 LYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP--ITLCKLQ 298 (639)
Q Consensus 221 Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~ 298 (639)
++.+.+..... + . +...+....+++|++|+++.|++.. .+ ..+..++
T Consensus 278 ls~tgi~si~~----~----d----------------------~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~ 326 (505)
T KOG3207|consen 278 LSSTGIASIAE----P----D----------------------VESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLE 326 (505)
T ss_pred ccccCcchhcC----C----C----------------------ccchhhhcccccceeeecccCcccc-ccccchhhccc
Confidence 66666554310 0 0 0011123456788888888888752 22 2234456
Q ss_pred CCcEEEccCCcCCCC
Q 041082 299 KLQLLSFVDNKLEGP 313 (639)
Q Consensus 299 ~L~~L~l~~N~l~~~ 313 (639)
+|+.|.+..|.+...
T Consensus 327 nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 327 NLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhhccccccccc
Confidence 677777777777643
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-09 Score=102.27 Aligned_cols=73 Identities=33% Similarity=0.426 Sum_probs=62.2
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+||||.-+|.|..+|... +.++..+..-+...|..||.||| +..||.||+|..|.+||+|+..||+|||+.+-
T Consensus 245 FVMeyanGGeLf~HLsre-r~FsE~RtRFYGaEIvsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE 317 (516)
T KOG0690|consen 245 FVMEYANGGELFFHLSRE-RVFSEDRTRFYGAEIVSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKE 317 (516)
T ss_pred EEEEEccCceEeeehhhh-hcccchhhhhhhHHHHHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchh
Confidence 699999999999888653 34555544456677899999999 67899999999999999999999999999874
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-09 Score=100.47 Aligned_cols=106 Identities=22% Similarity=0.314 Sum_probs=77.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--------hhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--------RAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
+++|.||++.. .+..+++|....... .....+..|+..+. .+|+||+++++
T Consensus 5 G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~ 83 (199)
T TIGR03724 5 GAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKP 83 (199)
T ss_pred CceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCcc
Confidence 45788999985 467888887542210 01123334444422 36789999988
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
|.+.+..... .++.+++++++++| ..+++|||++|.||+++ ++.+++.|||+++.
T Consensus 84 l~~~~~~~~~--------~~~~~i~~~l~~lH---~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~ 138 (199)
T TIGR03724 84 LKDVIEEGND--------ELLREIGRLVGKLH---KAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY 138 (199)
T ss_pred HHHHHhhcHH--------HHHHHHHHHHHHHH---HCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence 8877643211 78999999999999 77899999999999999 88999999999875
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-09 Score=98.35 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh--hhhH----------------------HHHHHHH----------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA--FKSF----------------------DVACDMM---------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~--~~~f----------------------~~e~~~~---------------- 446 (639)
.++|.||++...++..+|+|++....... ...+ ..+...+
T Consensus 8 G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~ 87 (187)
T cd05119 8 GKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVPKPIDL 87 (187)
T ss_pred ccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCCceEec
Confidence 45789999998889999999876432110 0000 1111111
Q ss_pred --HhhhhhcCCCCCchh-ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccc
Q 041082 447 --KKLVLEYMPHGSLEK-CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMA 523 (639)
Q Consensus 447 --~~Lv~ey~~~gsL~~-~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla 523 (639)
..+|+||++++.+.. .+... ... ....+++.+++.++.++|. ..+|+||||||.||+++ ++.+++.|||.+
T Consensus 88 ~~~~lv~e~~~g~~~~~~~l~~~--~~~-~~~~~~~~~~~~~l~~lh~--~~~ivH~Dl~p~Nili~-~~~~~liDfg~a 161 (187)
T cd05119 88 NRHVLVMEFIGGDGIPAPRLKDV--RLL-EDPEELYDQILELMRKLYR--EAGLVHGDLSEYNILVD-DGKVYIIDVPQA 161 (187)
T ss_pred CCCEEEEEEeCCCCccChhhhhh--hhc-ccHHHHHHHHHHHHHHHhh--ccCcCcCCCChhhEEEE-CCcEEEEECccc
Confidence 126889998865432 12110 011 4567889999999999993 17899999999999999 999999999999
Q ss_pred cccc
Q 041082 524 KLLL 527 (639)
Q Consensus 524 ~~~~ 527 (639)
....
T Consensus 162 ~~~~ 165 (187)
T cd05119 162 VEID 165 (187)
T ss_pred cccc
Confidence 7543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-10 Score=107.83 Aligned_cols=136 Identities=28% Similarity=0.283 Sum_probs=101.4
Q ss_pred ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-----C
Q 041082 90 GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-----Q 164 (639)
Q Consensus 90 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~ 164 (639)
|..-..+..+..|++||||+|.|+ .+.+++.-+|.++.|++++|.+... +.+..+++|+.||||+|.++.+ .
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhh
Confidence 333344455677888888888775 4566777778888888888888743 3477788888888888887764 4
Q ss_pred CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC-ccccCCCCCCCEEEccCCCCCCCC
Q 041082 165 IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI-PNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 165 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
+.++++|.|++|.+... +.+..+-+|..||+++|++.... -..++++|.|+.+.|.+|.+.+.+
T Consensus 351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 77888888888877421 23556778899999999985432 246899999999999999998764
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-09 Score=79.80 Aligned_cols=59 Identities=44% Similarity=0.488 Sum_probs=28.9
Q ss_pred ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 101 SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 101 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
+|+.|++++|++....+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444445555555555555555554444455555555555555444
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-10 Score=110.81 Aligned_cols=204 Identities=22% Similarity=0.258 Sum_probs=115.5
Q ss_pred CCcccceeeccCCcCCCCCC--ccccCCCCCcEEecccccCccccC--ccccCCCCCCEEecCCCCCCCC-------CCC
Q 041082 98 NMSSLLSIYFNNNTLFGEIP--EELGNLAELETLWLQNNFLTGTIH--SSIFNLSSLSDLDLSHNNLTDV-------QIP 166 (639)
Q Consensus 98 ~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-------~l~ 166 (639)
++.+|+...|.+.... ..+ .....+++++.|||+.|-+....| .....|++|+.|+|+.|.+... .++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5666777777666543 222 245567777777777776654332 2345667777777777766532 245
Q ss_pred CccEEEccCCccCcc-CCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcch
Q 041082 167 NLENLLLWGNNFSGA-IPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYL 245 (639)
Q Consensus 167 ~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l 245 (639)
.|+.|.|+.|.++-. +-..+..+++|+.|+|+.|.....-......+..|+.|+|++|++-...
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------------- 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------------- 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---------------
Confidence 666666666665411 1111223455666666666422222222334555555555555543321
Q ss_pred hhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccc-ccc-----ccCCcCCcEEEccCCcCCCCC-chhh
Q 041082 246 EQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI-PIT-----LCKLQKLQLLSFVDNKLEGPI-PYEF 318 (639)
Q Consensus 246 ~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~-----~~~l~~L~~L~l~~N~l~~~~-p~~~ 318 (639)
.....+.++.|..|+++.+.+...- |+. ...+++|++|++..|++.... -..+
T Consensus 263 --------------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 263 --------------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred --------------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 1123456667777777777665321 222 245689999999999985321 1234
Q ss_pred cCCCCCcEEECCCCcCccc
Q 041082 319 CRLASLYELDLSGNKLSGS 337 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~ 337 (639)
..+.+|+.|....|.++..
T Consensus 323 ~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccchhhhhhccccccccc
Confidence 4567788888888888743
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-09 Score=79.61 Aligned_cols=61 Identities=36% Similarity=0.447 Sum_probs=48.5
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
++|++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866666778888888888888888877777888888888888888865
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-10 Score=108.11 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=117.2
Q ss_pred CcEEEEEeCCCCCcc----cCCcCCCCCCCCCEEeccCC---cCCccCCccc-------cCCcccceeeccCCcCCCCCC
Q 041082 52 YRVTTLNISGLSLTS----TIPSELGNLSSLQTLDLSFN---WFSGSIPSSI-------FNMSSLLSIYFNNNTLFGEIP 117 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~----~~p~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~~~p 117 (639)
..++.|+|++|.+.. .+...+.+.+.|+.-++|.- ++...+|+.+ -..+.|+.|+||.|.|.-.-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 357788888887742 33345666677777777642 1222334332 233456666666666543333
Q ss_pred cc----ccCCCCCcEEecccccCccccC-------------ccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCc
Q 041082 118 EE----LGNLAELETLWLQNNFLTGTIH-------------SSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSG 180 (639)
Q Consensus 118 ~~----~~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~ 180 (639)
.. +.++.+|+.|.|.+|.+...-. ....+-++|+.+..+.|.+.+... .
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--------------~ 175 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--------------T 175 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH--------------H
Confidence 22 2345566666666665531100 011223344444444444443110 0
Q ss_pred cCCccccCCCCCcEEEcccCCCcc----cCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEE
Q 041082 181 AIPHFIFNASKLSILELQKNSFFD----LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFS 256 (639)
Q Consensus 181 ~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~ 256 (639)
.+...|...+.|+.+.++.|.+.. .+...|..+++|+.|||.+|-|+..... ..-..+ ...++|+.++
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-~LakaL-------~s~~~L~El~ 247 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-ALAKAL-------SSWPHLRELN 247 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-HHHHHh-------cccchheeec
Confidence 011223334455555555555421 1122345566666666666655432100 000000 1123456666
Q ss_pred eecCcccccc----chhh-cCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcC
Q 041082 257 MFNCNISGGI----LEEI-SNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKL 310 (639)
Q Consensus 257 l~~n~l~~~~----~~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l 310 (639)
+++|.+...= .+.+ ...++|+.|.|.+|.++.. +...+...+.|..|++++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666654321 1222 2357788888888877632 223344567888888888888
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-09 Score=114.27 Aligned_cols=65 Identities=29% Similarity=0.432 Sum_probs=57.0
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+||||+++++|.+++. .+..++.+++++++||| ..+++|||+||+||++ +++.++++|||+++..
T Consensus 413 lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~lH---~~giiHrDlkp~NILl-~~~~~~liDFGla~~~ 477 (535)
T PRK09605 413 IVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKLH---KAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS 477 (535)
T ss_pred EEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHHH---hCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence 6889999999877653 45789999999999999 6789999999999999 6788999999999853
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-10 Score=118.43 Aligned_cols=124 Identities=29% Similarity=0.360 Sum_probs=63.1
Q ss_pred cccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC----CCCccEEEccC
Q 041082 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWG 175 (639)
Q Consensus 100 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----l~~L~~L~L~~ 175 (639)
..++.+.+..|.+.. +-..+..+++|+.|+|.+|+|..+.. .+..+++|++|+|++|.|+.+. ++.|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheecc
Confidence 333444444444432 12224444555555555555543321 1444555555555555554432 44455555555
Q ss_pred CccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEEccCCCCCC
Q 041082 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 176 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
|.++.. ..+..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 555422 122335667777777777665544 2 3566777777777776654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-09 Score=105.10 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=60.0
Q ss_pred ccCccEEEeecCcccccc----chhhcCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcCCCC----Cch
Q 041082 249 SQSLEVFSMFNCNISGGI----LEEISNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPY 316 (639)
Q Consensus 249 ~~~l~~l~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~ 316 (639)
...|+++...+|.+...- -..+...+.|+.+.++.|.|... +...+..+++|+.||+..|-++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345666666666654321 22344556777777777766421 123455667777777777766532 233
Q ss_pred hhcCCCCCcEEECCCCcCcccCCccc-----cCCCCCCEEeCCCCcCc
Q 041082 317 EFCRLASLYELDLSGNKLSGSIPTCF-----GNQTSLRILSLDSNKLI 359 (639)
Q Consensus 317 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~ 359 (639)
+++.+++|+.|+++++.+...-...| ...++|++|.+.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 45556666666666666543222111 12345555555555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-10 Score=117.85 Aligned_cols=147 Identities=27% Similarity=0.284 Sum_probs=93.9
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+..++.+++..|.+.. +-..+..+++|..|++.+|++.+. ...+..+++|++|+|++|+|+.+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 45666667777777763 334466777777888887777643 222666777888888888777553 35566667778
Q ss_pred ecCCCCCCCCC----CCCccEEEccCCccCccCC-ccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 154 DLSHNNLTDVQ----IPNLENLLLWGNNFSGAIP-HFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 154 ~Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
++++|.|+.+. ++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.... .+..+..+..+++..|.++
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 88888776642 6677777788777765444 2 355677777777777775432 2333444444455555544
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=96.04 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=75.8
Q ss_pred cccCCCCCC---cCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh----------------------------
Q 041082 400 DLSMNNFSG---FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK---------------------------- 448 (639)
Q Consensus 400 ~ls~N~l~g---~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~---------------------------- 448 (639)
+|+...+-| ++.||. .+.....+||+.........+.+..|+..++.
T Consensus 3 ~L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~ 80 (210)
T PRK10345 3 RLSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY 80 (210)
T ss_pred ecCCcceecCCCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence 455544444 555674 33223346888765433344556666665432
Q ss_pred -hhhhc--CCCCCchhccccCCccCCHHHHHHHHHHHHHhh-hhhhccCCCCeEeecCCCCceeecC----Ccceeecc-
Q 041082 449 -LVLEY--MPHGSLEKCLYSSNYILDIFQRLNIMIDVALAL-EYLHFGYSTPIIHCDLKLSNVLLGN----NMVAHLSD- 519 (639)
Q Consensus 449 -Lv~ey--~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l-~~lh~~~~~~i~h~dlk~~nill~~----~~~~~i~d- 519 (639)
+|+|| +++|+|.+++... .++.. ..++.++..++ +||| ...|+||||||.||+++. +..++|+|
T Consensus 81 ~~I~e~~G~~~~tL~~~l~~~--~~~e~--~~~~~~~L~~l~~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 81 DVIADFDGKPSITLTEFAEQC--RYEED--VAQLRQLLKKLKRYLL---DNRIVTMELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred EEEecCCCCcchhHHHHHHcc--cccHh--HHHHHHHHHHHHHHHH---HCCEeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence 35677 4578888888542 24444 34567777777 8999 778999999999999974 34799999
Q ss_pred cccccc
Q 041082 520 FGMAKL 525 (639)
Q Consensus 520 fgla~~ 525 (639)
||.+.+
T Consensus 154 ~G~~~~ 159 (210)
T PRK10345 154 IGESTF 159 (210)
T ss_pred CCCcce
Confidence 555444
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=91.46 Aligned_cols=110 Identities=21% Similarity=0.378 Sum_probs=78.4
Q ss_pred cceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCchhccccC
Q 041082 411 SIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 411 ~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.||.|. +.+...+.+|.+..... +.+.+|+.++. .||+||+.+.+...+-.
T Consensus 53 EVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~-- 127 (338)
T KOG0668|consen 53 EVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYP-- 127 (338)
T ss_pred hHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhh--
Confidence 344443 34567788888765432 34455555522 37899998877655432
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccC
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~ 530 (639)
.++-....-...++..||.|.| +.+|.|||+||+||++|. .-+.++.|.|+|-+..++.
T Consensus 128 --tl~d~dIryY~~elLkALdyCH---S~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~ 187 (338)
T KOG0668|consen 128 --TLTDYDIRYYIYELLKALDYCH---SMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK 187 (338)
T ss_pred --hhchhhHHHHHHHHHHHHhHHH---hcCcccccCCcceeeechhhceeeeeecchHhhcCCCc
Confidence 2333344557788999999999 788999999999999996 4678999999999987654
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.6e-09 Score=108.21 Aligned_cols=71 Identities=30% Similarity=0.521 Sum_probs=58.3
Q ss_pred hhhhhcCCCCCchhccccCCccCCHH-HHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIF-QRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMA 523 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~-~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla 523 (639)
++||+|+++|++-.+|-.- ..+... .|+-| ..+++|+++.| .-+.|||||||.|||+|.|+.+|+.||||.
T Consensus 705 YFVMdYIPGGDmMSLLIrm-gIFeE~LARFYI-AEltcAiesVH---kmGFIHRDiKPDNILIDrdGHIKLTDFGLC 776 (1034)
T KOG0608|consen 705 YFVMDYIPGGDMMSLLIRM-GIFEEDLARFYI-AELTCAIESVH---KMGFIHRDIKPDNILIDRDGHIKLTDFGLC 776 (1034)
T ss_pred EEEEeccCCccHHHHHHHh-ccCHHHHHHHHH-HHHHHHHHHHH---hccceecccCccceEEccCCceeeeecccc
Confidence 4799999999998877532 234333 45545 45889999999 889999999999999999999999999985
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-08 Score=115.44 Aligned_cols=267 Identities=27% Similarity=0.270 Sum_probs=153.4
Q ss_pred CcEEEEEeCCCC--CcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEE
Q 041082 52 YRVTTLNISGLS--LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129 (639)
Q Consensus 52 ~~v~~L~L~~~~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 129 (639)
.++++|-+.+|. +....+..|..++.|++|||++|.=-+.+|..+++|-+|++|++++..+. .+|..+++|+.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 467888888876 44333345788999999999998877789999999999999999999886 789999999999999
Q ss_pred ecccccCccccCccccCCCCCCEEecCCCCCCC--C------CCCCccEEEccCCccCccCCccccCCCCCc----EEEc
Q 041082 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD--V------QIPNLENLLLWGNNFSGAIPHFIFNASKLS----ILEL 197 (639)
Q Consensus 130 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L 197 (639)
++..+.-...+|.....|.+|++|.+....... . .+..|+.+....... .+-.-+..+.+|. .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 999888766677777789999999886554222 1 233444443322211 0001111222222 2222
Q ss_pred ccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCC
Q 041082 198 QKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277 (639)
Q Consensus 198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 277 (639)
..+... ..+..++.+.+|+.|.+.++.+......+. .....+. ...++..+...++.... .+...--.++|+
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~--~~~~~~~----~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWE--ESLIVLL----CFPNLSKVSILNCHMLR-DLTWLLFAPHLT 773 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCchhhcccc--cccchhh----hHHHHHHHHhhcccccc-ccchhhccCccc
Confidence 222222 234457788999999998888764321110 0000000 00001111111111110 112222346777
Q ss_pred EEECCCCCCCccccccccCCcCCcEEEccCCcCCCC-CchhhcCCCCCcEEEC
Q 041082 278 AIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP-IPYEFCRLASLYELDL 329 (639)
Q Consensus 278 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~L 329 (639)
.|.+.++.....+......+..+..+.+..+.+.+. .-...+.++++..+.+
T Consensus 774 ~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 774 SLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred EEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 777777766555555555555565555666665554 2233344444444433
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-08 Score=94.13 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=77.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhh---hh------HHHHHHHH----------------------------Hhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAF---KS------FDVACDMM----------------------------KKL 449 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~---~~------f~~e~~~~----------------------------~~L 449 (639)
+|+|.||.... ++..+++|.+........ .. +..|.... ..+
T Consensus 42 ~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~l 120 (232)
T PRK10359 42 IDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIM 120 (232)
T ss_pred CCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEE
Confidence 57888998666 466899999975443221 11 34443321 236
Q ss_pred hhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 450 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 450 v~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+|||+++.+|.++.. ++. ....+++.++..+| ..+++|||+||+||+++.++ +++.|||..+...
T Consensus 121 vmEyi~G~tL~~~~~-----~~~----~~~~~i~~~l~~lH---~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~ 185 (232)
T PRK10359 121 LIEYIEGVELNDMPE-----ISE----DVKAKIKASIESLH---QHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA 185 (232)
T ss_pred EEEEECCccHHHhhh-----ccH----HHHHHHHHHHHHHH---HcCCccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence 889999888877631 221 34558899999999 77899999999999999888 9999999887653
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-08 Score=113.76 Aligned_cols=84 Identities=27% Similarity=0.249 Sum_probs=43.2
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCc--CCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT--LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
...+...+.+|.+. .++.... .+.|++|-+..|. +....++.|..|+.|++|||++|.=-+.+|..+++|.+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44555555555554 2333222 2245555555554 332233335556666666666655545566666666666655
Q ss_pred ecCCCCCC
Q 041082 154 DLSHNNLT 161 (639)
Q Consensus 154 ~Ls~N~l~ 161 (639)
+|++..++
T Consensus 601 ~L~~t~I~ 608 (889)
T KOG4658|consen 601 DLSDTGIS 608 (889)
T ss_pred cccCCCcc
Confidence 55555544
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-08 Score=98.89 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=99.1
Q ss_pred CchhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--------------------Cccee
Q 041082 458 SLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--------------------NMVAH 516 (639)
Q Consensus 458 sL~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--------------------~~~~~ 516 (639)
|+++.+.... ..+...+...|+.|+.++++||| ...++|-||||.|||+-. +..+|
T Consensus 176 S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~ 252 (415)
T KOG0671|consen 176 STFDFLKENNYIPFPIDHIRHMGYQLLESVAFLH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIK 252 (415)
T ss_pred hHHHHhccCCccccchHHHHHHHHHHHHHHHHHH---hcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceE
Confidence 6777776533 45788888999999999999999 788999999999999932 23478
Q ss_pred eccccccccccccCCC---cccc---------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CC
Q 041082 517 LSDFGMAKLLLKEDQS---FTQN---------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PI 572 (639)
Q Consensus 517 i~dfgla~~~~~~~~~---~~~~---------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~ 572 (639)
|.|||=|..-....+. ..+. ..+.++||| | ||..-... ..+-..| ..++..+ |.
T Consensus 253 vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqt-Hen~EHL-aMMerIlGp~P~ 330 (415)
T KOG0671|consen 253 VIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQT-HENLEHL-AMMERILGPIPS 330 (415)
T ss_pred EEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceeccc-CCcHHHH-HHHHHhhCCCcH
Confidence 9999999876554422 0110 123388998 6 55542211 0111111 1111111 11
Q ss_pred Ccc-e----------eee-cc--ccc-------cc---cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 573 SVM-E----------VVD-VN--LLS-------ME---DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 573 ~~~-~----------~~d-~~--l~~-------~~---~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+. . -+| ++ ..+ .+ ...+.....+..++++|....+..||.+|+|.+|++..
T Consensus 331 ~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~H 406 (415)
T KOG0671|consen 331 RMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSH 406 (415)
T ss_pred HHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcC
Confidence 100 0 011 00 000 00 01122335677889999999999999999999999853
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-08 Score=94.85 Aligned_cols=73 Identities=36% Similarity=0.451 Sum_probs=61.6
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+|.||+++|+|--++.. .+.++.....-+...|.-||.||| ..+|+.||+|..|||+|.++..|+.|||+.+-
T Consensus 328 fvieyv~ggdlmfhmqr-qrklpeeharfys~ei~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke 400 (593)
T KOG0695|consen 328 FVIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKE 400 (593)
T ss_pred EEEEEecCcceeeehhh-hhcCcHHHhhhhhHHHHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhc
Confidence 57899999999666653 234666665567778889999999 78899999999999999999999999999874
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-08 Score=104.72 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=57.8
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHH-hhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVAL-ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~-~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|||||++++++.+......... .+.+++..+++ .+.++| ..+++|+|+||.||+++.++.+++.|||++..+.
T Consensus 235 LvmE~i~G~~L~~~~~~~~~~~---~~~~ia~~~~~~~l~ql~---~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~ 308 (437)
T TIGR01982 235 LTMEWIDGIPLSDIAALDEAGL---DRKALAENLARSFLNQVL---RDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLS 308 (437)
T ss_pred EEEEeECCcccccHHHHHhcCC---CHHHHHHHHHHHHHHHHH---hCCceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence 7899999999987654211112 24567776666 456777 6789999999999999999999999999998775
Q ss_pred cc
Q 041082 528 KE 529 (639)
Q Consensus 528 ~~ 529 (639)
+.
T Consensus 309 ~~ 310 (437)
T TIGR01982 309 EE 310 (437)
T ss_pred HH
Confidence 43
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-08 Score=97.86 Aligned_cols=74 Identities=32% Similarity=0.416 Sum_probs=63.4
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++||||+.+|+|-.++..- ..+.....+-+|..||-||-||| +.+|+.||||..||+||.++.+||+|||+.+-
T Consensus 426 yFVMEyvnGGDLMyhiQQ~-GkFKEp~AvFYAaEiaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKE 499 (683)
T KOG0696|consen 426 YFVMEYVNGGDLMYHIQQV-GKFKEPVAVFYAAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 499 (683)
T ss_pred eeEEEEecCchhhhHHHHh-cccCCchhhhhhHHHHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccc
Confidence 3699999999997776542 23555566778999999999999 78899999999999999999999999999874
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-08 Score=68.27 Aligned_cols=40 Identities=38% Similarity=0.876 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCCCCCcccccCCCCC--CCCcCccceecC
Q 041082 8 NHLSFQVFVLKGHVTDDPTNFLAKNWNTS--STVCHWTGVSCD 48 (639)
Q Consensus 8 ~~~~~~ll~~k~~~~~~~~~~l~~~w~~~--~~~c~w~gv~c~ 48 (639)
+.+.+||++||+++..+|.+.+.+ |..+ ++||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 468999999999997667778888 9987 799999999996
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=85.26 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=76.4
Q ss_pred CcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHhh----------------------hhhcCCCCCchhcccc
Q 041082 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------------VLEYMPHGSLEKCLYS 465 (639)
Q Consensus 408 g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~L----------------------v~ey~~~gsL~~~l~~ 465 (639)
+++.+|++...+ ..+++|....... ...+..|...++.+ ++||++++.+..
T Consensus 10 ~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~---- 82 (155)
T cd05120 10 LTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDE---- 82 (155)
T ss_pred cccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeeccc----
Confidence 356788888754 6788888754332 23455555554433 333333332221
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+++..+..++.+++++++++|.....+++|+|+++.||+++....+++.|||.++.
T Consensus 83 ----~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~ 138 (155)
T cd05120 83 ----VSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138 (155)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence 25677888999999999999965556899999999999999999999999999874
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=94.47 Aligned_cols=115 Identities=28% Similarity=0.345 Sum_probs=79.9
Q ss_pred CCcCcceEEEecCC--ceeeeEEechhhhhhhhhHHHHHHHHHhhh--------------------hhc----CCCCCch
Q 041082 407 SGFGSIYKARIQDG--MKVAVKVFDLQYERAFKSFDVACDMMKKLV--------------------LEY----MPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g--~~vavK~l~~~~~~~~~~f~~e~~~~~~Lv--------------------~ey----~~~gsL~ 460 (639)
.+||.||.+.-... ..+|+|.-..........+..|+..++.+. |.| +.+.+|.
T Consensus 29 G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~G~sL~ 108 (322)
T KOG1164|consen 29 GGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLLGPSLE 108 (322)
T ss_pred cCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEeccCccHH
Confidence 46999999886543 467888765433222224444554433332 111 1133555
Q ss_pred hcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-----cceeeccccccc
Q 041082 461 KCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-----MVAHLSDFGMAK 524 (639)
Q Consensus 461 ~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-----~~~~i~dfgla~ 524 (639)
++... ....++-.+.++||.++..+|+++| ..+++||||||.|+.++.. ..+.+.|||+|+
T Consensus 109 dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH---~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar 175 (322)
T KOG1164|consen 109 DLRKRNPPGRFSRKTVLRIAIQNLNALEDLH---SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR 175 (322)
T ss_pred HHHHhCCCCCcCHhHHHHHHHHHHHHHHHHH---hcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence 54432 2356888899999999999999999 7789999999999999864 468999999998
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=90.82 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=55.0
Q ss_pred hhhhcCCC-CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 449 LVLEYMPH-GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 449 Lv~ey~~~-gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+|+||+++ .+|.+++... .++.. .+.++++++.+|| ..+|+||||||.|||++.++.+++.|||.++..
T Consensus 123 lV~e~l~G~~~L~~~l~~~--~l~~~----~~~~i~~~l~~lH---~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~ 192 (239)
T PRK01723 123 ILIERIEGARDLVALLQEA--PLSEE----QWQAIGQLIARFH---DAGVYHADLNAHNILLDPDGKFWLIDFDRGELR 192 (239)
T ss_pred EEEEecCCCCCHHHHHhcC--CCCHH----HHHHHHHHHHHHH---HCCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence 67788886 5777776432 23332 3567899999999 778999999999999999889999999998863
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.1e-07 Score=91.09 Aligned_cols=118 Identities=27% Similarity=0.369 Sum_probs=78.7
Q ss_pred cCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------------hhhhcCCCCCchh
Q 041082 409 FGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 409 ~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~gsL~~ 461 (639)
|++|..+.- .-|+.||||++..... ..+.=..|+++++. ||+|-+.- +|.+
T Consensus 445 Fs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Lsl-NLRe 522 (752)
T KOG0670|consen 445 FSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLSL-NLRE 522 (752)
T ss_pred eeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhhc-hHHH
Confidence 455555543 3468999999864321 11111223333222 56665543 6777
Q ss_pred cccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeeccccccccccccCC
Q 041082 462 CLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 462 ~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~~~~~ 531 (639)
.|.. ....|.......+|.|+--||..|- .-+|+|.||||.|||+.+. ...|+||||-|....+...
T Consensus 523 vLKKyG~nvGL~ikaVRsYaqQLflALklLK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~enei 592 (752)
T KOG0670|consen 523 VLKKYGRNVGLHIKAVRSYAQQLFLALKLLK---KCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEI 592 (752)
T ss_pred HHHHhCcccceeehHHHHHHHHHHHHHHHHH---hcCeeecccCccceEeccCcceeeeccCccccccccccc
Confidence 7754 2334556666778899999999998 5679999999999999975 5679999999988776543
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=103.31 Aligned_cols=116 Identities=30% Similarity=0.368 Sum_probs=88.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh----------hh-----hHHHHHHH-----HHhhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA----------FK-----SFDVACDM-----MKKLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~----------~~-----~f~~e~~~-----~~~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||+|.-.+|..+|+|+=......- .+ .|...+.. -..||.||.+-|+|-+++. .
T Consensus 709 g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N-~ 787 (974)
T KOG1166|consen 709 GSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTLLDLIN-T 787 (974)
T ss_pred ccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccccccHHHhhc-c
Confidence 45899999998889999999754432111 11 11111111 1237889999999999887 4
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------Ccceeeccccccccc
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------NMVAHLSDFGMAKLL 526 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------~~~~~i~dfgla~~~ 526 (639)
.+.++|.-.+.++.++++-++.|| ...||||||||.|.+|.. ....+|.|||.+--+
T Consensus 788 ~~~m~e~lv~~~~~qml~ive~lH---~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm 851 (974)
T KOG1166|consen 788 NKVMDEYLVMFFSCQMLRIVEHLH---AMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDM 851 (974)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHH---hcceecccCCcceeEeecccCCCCcccceEEEecccceee
Confidence 567899999999999999999999 778999999999999942 356799999988543
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.4e-07 Score=83.73 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=82.2
Q ss_pred CCcCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHH---------------------HhhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------KKLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~l~ 464 (639)
..||.+|.+. +.+|..||+|.-..... .....-|..+- ..+||+.+ +.||.+++.
T Consensus 26 GSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfn 102 (341)
T KOG1163|consen 26 GSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFN 102 (341)
T ss_pred CchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHHHHHH
Confidence 3488999886 67899999997532211 11222222221 12566655 447777664
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---Ccceeecccccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~ 529 (639)
--.+.++..+.+-+|-|+..-++|+| ....+||||||.|.|.+- .....+.|||+|+-+-+.
T Consensus 103 fC~R~ftmkTvLMLaDQml~RiEyvH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~ 167 (341)
T KOG1163|consen 103 FCSRRFTMKTVLMLADQMLSRIEYVH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDI 167 (341)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHH---hhccccccCCccceeeccccccceEEEEeccchhhhccc
Confidence 43445777788889999999999999 666999999999999974 456789999999876543
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-07 Score=91.24 Aligned_cols=108 Identities=29% Similarity=0.352 Sum_probs=80.7
Q ss_pred CcCcceEEEec----CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 408 GFGSIYKARIQ----DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 408 g~g~vy~~~l~----~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.|++||++... ....+|+|.+...... .....|++++. ..|+||+++-...++
T Consensus 48 sFssv~~a~~~~~~~~~~~valk~i~~ts~p--~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l 125 (418)
T KOG1167|consen 48 SFSSVYKATDIEQDTKRRYVALKAIYRTSSP--SRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDL 125 (418)
T ss_pred chhhhhhhhHhhhccccceEeeeecccccCc--hHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccCHHHH
Confidence 47788888754 3578999988765432 22334444422 257899988777776
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-Ccceeeccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAK 524 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~ 524 (639)
..+ ++......+.....+||+++| ..+||||||||+|+|.+. -+.-.+.|||+|.
T Consensus 126 ~~~----l~~~~i~~Yl~~ll~Al~~~h---~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~ 181 (418)
T KOG1167|consen 126 YRS----LSLAEIRWYLRNLLKALAHLH---KNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ 181 (418)
T ss_pred Hhc----CCHHHHHHHHHHHHHHhhhhh---ccCccccCCCccccccccccCCceEEechhHH
Confidence 543 556666677788899999999 889999999999999985 5777899999997
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=84.44 Aligned_cols=116 Identities=25% Similarity=0.339 Sum_probs=84.0
Q ss_pred cCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccccC
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
||.++.|. +-++.+||+|.-.... ...+...|...-+ .||+|.+ +.||.+++.-.
T Consensus 41 FG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~C 117 (449)
T KOG1165|consen 41 FGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLC 117 (449)
T ss_pred ceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcCHHHHHHHh
Confidence 66777665 4568899999643221 1234444444422 2666765 44787776545
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----CcceeeccccccccccccC
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-----NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-----~~~~~i~dfgla~~~~~~~ 530 (639)
++.++..+.+-||.++..-++|+| ...+|.|||||.|+|++. ...+++.|||+|+.+.+..
T Consensus 118 gR~FSvKTV~miA~Qmi~rie~vH---~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~ 183 (449)
T KOG1165|consen 118 GRRFSVKTVAMIAKQMITRIEYVH---EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPK 183 (449)
T ss_pred cCcccHHhHHHHHHHHHHHHHHHH---hcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCcc
Confidence 566888888999999999999999 778999999999999974 3457899999999886543
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.8e-07 Score=98.05 Aligned_cols=72 Identities=31% Similarity=0.446 Sum_probs=62.1
Q ss_pred hhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 450 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 450 v~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+|||++. +|+..+-+. ..+....+..+..++.+|+.|+| ..+|.|||+|+.|+++...+.+||+|||.+...
T Consensus 399 ~mE~~~~-Dlf~~~~~~-~~~~~~e~~c~fKqL~~Gv~y~h---~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf 470 (601)
T KOG0590|consen 399 SMEYCPY-DLFSLVMSN-GKLTPLEADCFFKQLLRGVKYLH---SMGLAHRDLKLENLLVTENGILKIIDFGAASVF 470 (601)
T ss_pred hhhcccH-HHHHHHhcc-cccchhhhhHHHHHHHHHHHHHH---hcCceeccCccccEEEecCCceEEeecCcceee
Confidence 4799998 998887643 24667777888999999999999 778999999999999999999999999988654
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-06 Score=86.28 Aligned_cols=99 Identities=30% Similarity=0.301 Sum_probs=69.3
Q ss_pred cCcceEEE-ecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------------hhhhhcCC
Q 041082 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------------KLVLEYMP 455 (639)
Q Consensus 409 ~g~vy~~~-l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------------~Lv~ey~~ 455 (639)
|.+||.+. .+....||+|+..-... ....-..|+..++ .+|+||+.
T Consensus 91 FSTVWLawDtq~~r~VAlKVvKSAqh-YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLG 169 (590)
T KOG1290|consen 91 FSTVWLAWDTQNKRYVALKVVKSAQH-YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLG 169 (590)
T ss_pred cceeEEEeeccCCeEEEEEEEehhhH-HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhh
Confidence 66788876 56678999998753211 1111122333321 15777775
Q ss_pred CCCchhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC
Q 041082 456 HGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN 511 (639)
Q Consensus 456 ~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~ 511 (639)
. +|-.++..+. +.+......+|+.+|..||.|||..| +|||-||||.|||+..
T Consensus 170 d-nLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~ 223 (590)
T KOG1290|consen 170 D-NLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCS 223 (590)
T ss_pred h-HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeec
Confidence 4 6666665533 34778888999999999999999987 5999999999999953
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.6e-06 Score=86.19 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=80.5
Q ss_pred CcCcceEEEecC-CceeeeEEechhhh--------hhhhhHHHHHHHHHhh----------hhhcCC-------------
Q 041082 408 GFGSIYKARIQD-GMKVAVKVFDLQYE--------RAFKSFDVACDMMKKL----------VLEYMP------------- 455 (639)
Q Consensus 408 g~g~vy~~~l~~-g~~vavK~l~~~~~--------~~~~~f~~e~~~~~~L----------v~ey~~------------- 455 (639)
.+|.|..+.... ...|.+|.+..... +-.+....|++++..| +.+|.+
T Consensus 573 AyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl~te~hg 652 (772)
T KOG1152|consen 573 AYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDDYYYLETEVHG 652 (772)
T ss_pred ccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCCeeEEEecCCC
Confidence 467777776543 45677787643321 1123455566664432 112222
Q ss_pred -CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 456 -HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 456 -~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+-+|.+++.. ...++.....-|..||+-|+++|| ..+|||||||-.||.+|.++-+|+.|||-|....+
T Consensus 653 ~gIDLFd~IE~-kp~m~E~eAk~IFkQV~agi~hlh---~~~ivhrdikdenvivd~~g~~klidfgsaa~~ks 722 (772)
T KOG1152|consen 653 EGIDLFDFIEF-KPRMDEPEAKLIFKQVVAGIKHLH---DQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKS 722 (772)
T ss_pred CCcchhhhhhc-cCccchHHHHHHHHHHHhcccccc---ccCceecccccccEEEecCCeEEEeeccchhhhcC
Confidence 3355555542 234677777889999999999999 77899999999999999999999999998876543
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.5e-06 Score=76.59 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=68.2
Q ss_pred cCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhccccCCcc
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYSSNYI 469 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~~~~~ 469 (639)
.+.+|+.... +..+++|....... ....+..|...++ .+|+||+++.++...
T Consensus 11 ~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~------- 81 (170)
T cd05151 11 TNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTE------- 81 (170)
T ss_pred cCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccccc-------
Confidence 4567877765 66788888643321 1122333443322 356777777665432
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccC--CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGY--STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~--~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
+ .....++.+++++++.||... ...++|||+++.||+++ +..+++.|||.+..
T Consensus 82 -~-~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~ 136 (170)
T cd05151 82 -D-FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM 136 (170)
T ss_pred -c-ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence 0 112345678999999999533 23479999999999999 66799999999873
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-08 Score=104.21 Aligned_cols=120 Identities=31% Similarity=0.310 Sum_probs=80.1
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
.+...+.+.|.++ .+..++.-++.|+.|||++|++... +.+..++.|++|||+.|.+....--....+. |+.|.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555666666665 2344566677788888888887644 3677777888888888877654333444555 7888888
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNF 178 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l 178 (639)
+|.++.. ..+.+|.+|+.||+++|-|.+.. +..|+.|+|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8877643 24667777888888888776632 45667777777765
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.8e-07 Score=85.16 Aligned_cols=88 Identities=26% Similarity=0.323 Sum_probs=57.9
Q ss_pred CCCCCCEEeccCCcCCc--cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcccc-CccccCCCCC
Q 041082 74 NLSSLQTLDLSFNWFSG--SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTI-HSSIFNLSSL 150 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L 150 (639)
..+.++.|||.+|.|+. .+-.-+.+|+.|+.|+|+.|.+...|...-.-+.+|++|-|.+..+.-.- ...+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45678888888888863 23334457788888888888876554332235567888888777765322 2345677777
Q ss_pred CEEecCCCCCC
Q 041082 151 SDLDLSHNNLT 161 (639)
Q Consensus 151 ~~L~Ls~N~l~ 161 (639)
+.|++|.|++.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 78877777543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.1e-08 Score=101.95 Aligned_cols=122 Identities=26% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
.|.+.+.++|.+. ....++.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+.....-...++. |+.|.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3555566677766 4556666777788888888887654 2677777888888888887743333444444 7778888
Q ss_pred CCCCCCC----CCCCccEEEccCCccCccCC-ccccCCCCCcEEEcccCCC
Q 041082 157 HNNLTDV----QIPNLENLLLWGNNFSGAIP-HFIFNASKLSILELQKNSF 202 (639)
Q Consensus 157 ~N~l~~~----~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l 202 (639)
+|.++.+ ++.+|+.||+++|-+++.-. ..+..+..|+.|+|.+|.+
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8877653 36777777888777654321 1233456677777777765
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.3e-06 Score=78.68 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=46.6
Q ss_pred CCCCCEEECCCCCCCccc-cccccCCcCCcEEEccCCcCCCCC-chhhcCCCCCcEEECCCCcCcccCCc------cccC
Q 041082 273 LTNLTAIYLAGNKLNGSI-PITLCKLQKLQLLSFVDNKLEGPI-PYEFCRLASLYELDLSGNKLSGSIPT------CFGN 344 (639)
Q Consensus 273 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~------~~~~ 344 (639)
++++..+.+..|.+.... -..+..++.+..|+|+.|+|..-- -..+.++++|..|.+++|.+...+.. .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 445555666666554322 123344555556677777664321 13456677788888888777643321 2456
Q ss_pred CCCCCEEeCC
Q 041082 345 QTSLRILSLD 354 (639)
Q Consensus 345 l~~L~~L~l~ 354 (639)
++++++|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7778887544
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.7e-05 Score=77.73 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee--cCCcc--eeeccccccc
Q 041082 472 IFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL--GNNMV--AHLSDFGMAK 524 (639)
Q Consensus 472 ~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill--~~~~~--~~i~dfgla~ 524 (639)
...+.-|..|..+|+.||| ..+|.|||+|+.|||+ |+|.. ..|+|||+.-
T Consensus 340 ~r~~~~~laQlLEav~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL 393 (598)
T KOG4158|consen 340 YRTGRVILAQLLEAVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL 393 (598)
T ss_pred hHHHHHHHHHHHHHHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence 3334556778899999999 8889999999999998 44544 4689999763
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=85.05 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=49.7
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAK 524 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~ 524 (639)
|||||+.++.+.+.-.-.....+ +..++...++ .|++.-...+++|+|+||.||+++.++ ..++.|||++.
T Consensus 238 LvmE~i~G~~l~d~~~l~~~g~d---~~~la~~~v~--~~~~Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg 312 (537)
T PRK04750 238 MVMERMYGIPVSDVAALRAAGTD---MKLLAERGVE--VFFTQVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVG 312 (537)
T ss_pred EEEeeecCccHHhHHHHHhcCCC---HHHHHHHHHH--HHHHHHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEE
Confidence 78999999988763210111122 2223332222 233322356799999999999999887 89999999998
Q ss_pred ccccc
Q 041082 525 LLLKE 529 (639)
Q Consensus 525 ~~~~~ 529 (639)
.+.+.
T Consensus 313 ~l~~~ 317 (537)
T PRK04750 313 SLNKE 317 (537)
T ss_pred ECCHH
Confidence 77654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=54.64 Aligned_cols=36 Identities=42% Similarity=0.586 Sum_probs=17.3
Q ss_pred ccceeeccCCcCCCCCCccccCCCCCcEEecccccCc
Q 041082 101 SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLT 137 (639)
Q Consensus 101 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 137 (639)
+|++|++++|+++. +|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555542 3434555555555555555554
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-06 Score=72.93 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCCCCCEEECCCCCCCccccccc-cCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCE
Q 041082 272 NLTNLTAIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350 (639)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 350 (639)
....|+..+|++|.+.. .|..| ...+.++.|++++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 33445555666666653 23222 23335555666666655 33444555566666666665555 33444444555555
Q ss_pred EeCCCCcCcc
Q 041082 351 LSLDSNKLIS 360 (639)
Q Consensus 351 L~l~~N~l~~ 360 (639)
|+..+|.+..
T Consensus 128 Lds~~na~~e 137 (177)
T KOG4579|consen 128 LDSPENARAE 137 (177)
T ss_pred hcCCCCcccc
Confidence 5555555443
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.8e-05 Score=80.98 Aligned_cols=78 Identities=46% Similarity=0.591 Sum_probs=64.7
Q ss_pred hhhhhcCCCCCchhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAK 524 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~ 524 (639)
.++++|+.++++.+.+.... ..+.......+..+++.+++|+| ..+++|||+||.||+++... .+++.|||+++
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H---~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~ 150 (384)
T COG0515 74 YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAK 150 (384)
T ss_pred EEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeecCCCCeEEEeccCcce
Confidence 36788888888886554332 25777888999999999999999 56699999999999999988 79999999998
Q ss_pred cccc
Q 041082 525 LLLK 528 (639)
Q Consensus 525 ~~~~ 528 (639)
....
T Consensus 151 ~~~~ 154 (384)
T COG0515 151 LLPD 154 (384)
T ss_pred ecCC
Confidence 5543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.3e-05 Score=53.86 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
++|++|++++|+|+ .+|..+.+|++|+.|++++|.++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46888888888888 567678888888888888888763
|
... |
| >PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=97.71 E-value=5e-05 Score=70.80 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=44.8
Q ss_pred hhhhcCC--CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 449 LVLEYMP--HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 449 Lv~ey~~--~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+||||++ +..+..+... .++......++.++.+.+..+++ ..+++|||+.+.||+++++ .+.+.|||-|...
T Consensus 83 ivME~I~~~G~~~~~l~~~---~~~~~~~~~~~~~il~~~~~~~~--~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~ 156 (188)
T PF01163_consen 83 IVMEYIGEDGVPLPRLKDV---DLSPEEPKELLEEILEEIIKMLH--KAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDS 156 (188)
T ss_dssp EEEE--EETTEEGGCHHHC---GGGGSTHHHHHHHHHHHHHHHHH--CTTEEESS-STTSEEEETT-CEEE--GTTEEET
T ss_pred EEEEecCCCccchhhHHhc---cccchhHHHHHHHHHHHHHHHHH--hcCceecCCChhhEEeecc-eEEEEecCcceec
Confidence 7899998 4344332211 11123345566777776666543 5689999999999999988 9999999988654
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A. |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.8e-05 Score=68.34 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=25.9
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
+...+||++|.+... +.|..++.|.+|.|++|.|+..-|.--.-+++|+.|.|.+|.|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344555555555321 2334444444444444444443333333334444444444444
|
|
| >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.8e-05 Score=72.81 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=53.5
Q ss_pred hhhhcCCCCCchh-ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 449 LVLEYMPHGSLEK-CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 449 Lv~ey~~~gsL~~-~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+||||+.++.+.. .+.. ..++..+..++..++..++.+++| ..+|+|||+++.||+++ ++.+.+.|||.|...
T Consensus 101 lvME~Ig~~~~~~~~Lkd--~~~~~~~~~~i~~~i~~~l~~l~H--~~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~ 174 (197)
T cd05146 101 LVMSFIGDDQVPAPKLKD--AKLNDEEMKNAYYQVLSMMKQLYK--ECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEP 174 (197)
T ss_pred EEEEEcCCCCccchhhhc--cccCHHHHHHHHHHHHHHHHHHHH--hCCeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence 7899998754432 2221 123444456778899999999943 55899999999999997 467999999987654
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4e-05 Score=85.86 Aligned_cols=205 Identities=23% Similarity=0.278 Sum_probs=117.9
Q ss_pred CcCcceEEEecCCceeeeEEechhh-hhhhhhHHHHHHH----------------------HHhhhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQDGMKVAVKVFDLQY-ERAFKSFDVACDM----------------------MKKLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~~g~~vavK~l~~~~-~~~~~~f~~e~~~----------------------~~~Lv~ey~~~gsL~~~l~ 464 (639)
.|-.+.++.-+.|. +.||++-... .-....|...++. ..+||-+|+.+ +|++.+.
T Consensus 35 RFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqyvkh-nLyDRlS 112 (1431)
T KOG1240|consen 35 RFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQYVKH-NLYDRLS 112 (1431)
T ss_pred hhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHHHhh-hhhhhhc
Confidence 34556677777775 7788875433 2223444443333 22466677765 7888775
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc--cccCCC-cccccccc-
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL--LKEDQS-FTQNTNTC- 540 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~--~~~~~~-~~~~~~~~- 540 (639)
- +.-+......=||.|+..|+.-.| ..+|.|||||++|||++.-.=+.++||.--+.. .++.-+ .+....|.
T Consensus 113 T-RPFL~~iEKkWiaFQLL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSr 188 (1431)
T KOG1240|consen 113 T-RPFLVLIEKKWIAFQLLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSR 188 (1431)
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCC
Confidence 3 223445556668999999999999 789999999999999999888999999533322 111110 11000000
Q ss_pred -------ccccc---c-------CC-CCCCCccCCCccchHHHHHhhCC---------CCcceeeeccccccccccccch
Q 041082 541 -------HHRIY---G-------TR-RNPQMNFFSGEMTLKSWVNDLLP---------ISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 541 -------~~dvy---G-------tg-~~p~~~~~~~~~~l~~~~~~~~~---------~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+..-| | .+ -.|..|+|+-|..+.|......| .+..+-.|++-.- +..
T Consensus 189 RRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~L------e~I 262 (1431)
T KOG1240|consen 189 RRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLL------EKI 262 (1431)
T ss_pred ceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHH------HhC
Confidence 11111 1 11 34566667666555544332111 1111122222110 000
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+-..+-++.+..++.+|++|-++.+.++.=.
T Consensus 263 --ed~~~Rnlil~Mi~rdPs~RlSAedyL~~yr 293 (1431)
T KOG1240|consen 263 --EDVSLRNLILSMIQRDPSKRLSAEDYLQKYR 293 (1431)
T ss_pred --cCccHHHHHHHHHccCchhccCHHHHHHhhh
Confidence 0013556778899999999999999987633
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.3e-05 Score=76.44 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=55.6
Q ss_pred hhhhcCCCCCchhccccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeec
Q 041082 449 LVLEYMPHGSLEKCLYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLS 518 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~ 518 (639)
++.|||+.|++..+|++- ...+....-.+++.+|..||.||| .|.|+|+|+++...-|....++-+|++
T Consensus 149 Fiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLh-s~~PpiihgnlTc~tifiq~ngLIkig 220 (458)
T KOG1266|consen 149 FITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLH-SCDPPIIHGNLTCDTIFIQHNGLIKIG 220 (458)
T ss_pred EEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh-ccCCccccCCcchhheeecCCceEEec
Confidence 567999999999999761 122322333568999999999999 689999999999999999988877775
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.8e-06 Score=71.47 Aligned_cols=107 Identities=26% Similarity=0.317 Sum_probs=69.2
Q ss_pred EEEEEeCCCCCcccCCc---CCCCCCCCCEEeccCCcCCccCCccccCC-cccceeeccCCcCCCCCCccccCCCCCcEE
Q 041082 54 VTTLNISGLSLTSTIPS---ELGNLSSLQTLDLSFNWFSGSIPSSIFNM-SSLLSIYFNNNTLFGEIPEELGNLAELETL 129 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 129 (639)
...++|++..+. .+++ .+....+|+..+|++|.+. ..|..|... +.++.|+|++|.+. .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344666666553 2332 3445556666777777777 345555433 46777777777775 467777777777777
Q ss_pred ecccccCccccCccccCCCCCCEEecCCCCCCCCC
Q 041082 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ 164 (639)
Q Consensus 130 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 164 (639)
+++.|.+. ..|..+..|.+|-+|+..+|.+..+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence 77777776 45666666777777777777766543
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.5e-05 Score=81.09 Aligned_cols=76 Identities=26% Similarity=0.383 Sum_probs=64.4
Q ss_pred hhhhhcCCCCCchhcccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++.|+++...+|.+|+.+ .....+|.....++.+++.|++| ...+|||+||.||....+...||+|||+.-.
T Consensus 332 yI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts 405 (516)
T KOG1033|consen 332 YIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS 405 (516)
T ss_pred hhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhheee
Confidence 467888999999999964 23457888899999999999999 4589999999999999999999999999765
Q ss_pred cccc
Q 041082 526 LLKE 529 (639)
Q Consensus 526 ~~~~ 529 (639)
....
T Consensus 406 ~~~~ 409 (516)
T KOG1033|consen 406 QDKD 409 (516)
T ss_pred cccC
Confidence 5433
|
|
| >COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.2e-05 Score=70.06 Aligned_cols=65 Identities=29% Similarity=0.523 Sum_probs=52.9
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++|||+++-.|.+.+... +..++..|-+-+.-|| ..+|+|+|+.++||.+.++. +.+.||||+.+
T Consensus 76 I~me~I~G~~lkd~l~~~--------~~~~~r~vG~~vg~lH---~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~ 140 (204)
T COG3642 76 IVMEYIEGELLKDALEEA--------RPDLLREVGRLVGKLH---KAGIVHGDLTTSNIILSGGR-IYFIDFGLGEF 140 (204)
T ss_pred EEEEEeCChhHHHHHHhc--------chHHHHHHHHHHHHHH---hcCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence 688999887777666432 4566667777788899 77899999999999998776 88999999985
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00034 Score=72.24 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc-cCccccCccccCCCCCCE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN-FLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~ 152 (639)
.+.++++|++++|.++ .+| .+ ..+|+.|.++++.-...+|+.+. ++|+.|++++| .+. .+|. +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 3456666666666655 344 11 13466666665433344554442 46677777766 333 3332 3555
Q ss_pred EecCCCCCCCCC-C-CCccEEEcc
Q 041082 153 LDLSHNNLTDVQ-I-PNLENLLLW 174 (639)
Q Consensus 153 L~Ls~N~l~~~~-l-~~L~~L~L~ 174 (639)
|+++.|.+..+. + ++|+.|.+.
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~ 140 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSIN 140 (426)
T ss_pred EEeCCCCCcccccCcchHhheecc
Confidence 555555443321 1 345555543
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=67.28 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=77.2
Q ss_pred cCcceEEEecCCceeeeEEechhhh-hhhhhHHHHHHHHH-------------------------hhhhhcCCCCCchhc
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYE-RAFKSFDVACDMMK-------------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL~~~ 462 (639)
.+.+|+....+|..+++|....... .....+..|.+.++ .+||||++++++.+.
T Consensus 11 ~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~ 90 (223)
T cd05154 11 SNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDR 90 (223)
T ss_pred cceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeCCEecCCC
Confidence 4567887776667888887654321 11233444444422 256677776666554
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhcc--------------------------------------------------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFG-------------------------------------------------- 492 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~-------------------------------------------------- 492 (639)
+.. ..++..++..++.+++++++++|..
T Consensus 91 ~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T cd05154 91 LLR--PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHL 168 (223)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhC
Confidence 421 2367777888889999999998842
Q ss_pred ---CCCCeEeecCCCCceeecC--Ccceeecccccccc
Q 041082 493 ---YSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKL 525 (639)
Q Consensus 493 ---~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~ 525 (639)
....++|+|+.+.||+++. +..+.|.||+.+..
T Consensus 169 ~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~ 206 (223)
T cd05154 169 PADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL 206 (223)
T ss_pred CCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence 1245799999999999998 66788999988764
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0002 Score=65.42 Aligned_cols=98 Identities=29% Similarity=0.342 Sum_probs=61.1
Q ss_pred ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEc
Q 041082 101 SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLL 173 (639)
Q Consensus 101 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L 173 (639)
+...+||++|.+.. -+.|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|+|..+ .+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44566777776632 23466677777777777777766665445566677777777766543 2567777777
Q ss_pred cCCccCccCC---ccccCCCCCcEEEcccC
Q 041082 174 WGNNFSGAIP---HFIFNASKLSILELQKN 200 (639)
Q Consensus 174 ~~N~l~~~~p---~~~~~l~~L~~L~L~~N 200 (639)
-+|..+..-- ..+..+++|++||++.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7776642211 23445677788777653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.7e-05 Score=70.91 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=45.1
Q ss_pred ccCCCCCCEEecCCCCCCCC----------CCCCccEEEccCCcc---CccCC-------ccccCCCCCcEEEcccCCCc
Q 041082 144 IFNLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNF---SGAIP-------HFIFNASKLSILELQKNSFF 203 (639)
Q Consensus 144 ~~~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l---~~~~p-------~~~~~l~~L~~L~L~~N~l~ 203 (639)
+..+..++.++||+|.|..- .-.+|+..+++.--. ...+| ..+..+++|+..+||+|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467788888888887641 123455544443211 01111 22345666667777766665
Q ss_pred ccCcc----ccCCCCCCCEEEccCCCCC
Q 041082 204 DLIPN----TFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 204 ~~~p~----~~~~l~~L~~L~Ls~N~l~ 227 (639)
...|. .+++-+.|++|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44333 2344556666666666554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=9.2e-06 Score=78.02 Aligned_cols=151 Identities=22% Similarity=0.187 Sum_probs=105.3
Q ss_pred CCCCEEeccCCcCCc-cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc-Cccc-cCccccCCCCCCE
Q 041082 76 SSLQTLDLSFNWFSG-SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF-LTGT-IHSSIFNLSSLSD 152 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~ 152 (639)
+.||+||||+..|+. .+-.-+..+.+|+.|.|.++++...+-..+..-.+|+.|+|+.+. ++.. ..--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358999999988863 223345678899999999999998888889999999999999864 3211 1123678999999
Q ss_pred EecCCCCCCCCC--------CCCccEEEccCCcc---CccCCccccCCCCCcEEEcccCCC-cccCccccCCCCCCCEEE
Q 041082 153 LDLSHNNLTDVQ--------IPNLENLLLWGNNF---SGAIPHFIFNASKLSILELQKNSF-FDLIPNTFGNLINLKRLN 220 (639)
Q Consensus 153 L~Ls~N~l~~~~--------l~~L~~L~L~~N~l---~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~ 220 (639)
|+|+.+.++.-. -++|+.|+|++..= ..-+......+++|..|||++|.. +.-.-..|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998776411 35777888876431 111222234678888888888753 322223466788888888
Q ss_pred ccCCCC
Q 041082 221 LYDNYL 226 (639)
Q Consensus 221 Ls~N~l 226 (639)
++.+..
T Consensus 345 lsRCY~ 350 (419)
T KOG2120|consen 345 LSRCYD 350 (419)
T ss_pred hhhhcC
Confidence 888754
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=69.78 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCC--cCCCCCCccccCCCCCcEEecccccCccccCcc---ccC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN--TLFGEIPEELGNLAELETLWLQNNFLTGTIHSS---IFN 146 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~ 146 (639)
...+..|+.|.+.+..++.. ..|..|++|+.|.++.| ...+.++...-.+++|++|+|++|++.- +++ +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 33445555666655555432 34556667777777777 5555555555566888888888887762 233 345
Q ss_pred CCCCCEEecCCCCCCC
Q 041082 147 LSSLSDLDLSHNNLTD 162 (639)
Q Consensus 147 l~~L~~L~Ls~N~l~~ 162 (639)
+.+|..|++.++..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 5566677777776554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00018 Score=68.51 Aligned_cols=195 Identities=24% Similarity=0.260 Sum_probs=96.6
Q ss_pred CCCccEEEccCCccCccCCcc----ccCCCCCcEEEcccCCCcccCcccc-------------CCCCCCCEEEccCCCCC
Q 041082 165 IPNLENLLLWGNNFSGAIPHF----IFNASKLSILELQKNSFFDLIPNTF-------------GNLINLKRLNLYDNYLT 227 (639)
Q Consensus 165 l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~~-------------~~l~~L~~L~Ls~N~l~ 227 (639)
+|.|+..+||+|.|....|.. +...+.|.+|.+++|.+.-....-+ .+-|.|+++....|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 456666666666665555443 4456778888888876532211111 23456666666666654
Q ss_pred CCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcc-----ccccccCCcCCcE
Q 041082 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS-----IPITLCKLQKLQL 302 (639)
Q Consensus 228 ~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~ 302 (639)
.-+.... . .-+..-.+|+.+.+..|.|... +-..+..+++|+.
T Consensus 171 ngs~~~~-----------a---------------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~Lev 218 (388)
T COG5238 171 NGSKELS-----------A---------------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEV 218 (388)
T ss_pred cCcHHHH-----------H---------------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCccee
Confidence 3211000 0 0001112344444444443311 0012234556666
Q ss_pred EEccCCcCCCC----CchhhcCCCCCcEEECCCCcCcccCCcc----cc--CCCCCCEEeCCCCcCcccchhhhhcCCCC
Q 041082 303 LSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGSIPTC----FG--NQTSLRILSLDSNKLISIIPSTLWNLKDI 372 (639)
Q Consensus 303 L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 372 (639)
||++.|-++-. +..+++..+.|+.|.+..|-++..-..+ |. ..++|..|-..+|...+.+
T Consensus 219 LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~---------- 288 (388)
T COG5238 219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI---------- 288 (388)
T ss_pred eeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce----------
Confidence 67666666422 2234556666777777777665332211 11 2356777777888765432
Q ss_pred cEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 373 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.++.+-|.+ .-..++-|..+.+.+|.|..
T Consensus 289 -i~~~~l~~~------e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 289 -ILDISLNEF------EQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred -eeeechhhh------hhcccHHHHHHHHccCcchh
Confidence 122232322 12345556666666777653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=69.98 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=10.3
Q ss_pred CCCCCcEEecccccCc
Q 041082 122 NLAELETLWLQNNFLT 137 (639)
Q Consensus 122 ~l~~L~~L~L~~N~l~ 137 (639)
.+.+++.|++++|.++
T Consensus 50 ~~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 50 EARASGRLYIKDCDIE 65 (426)
T ss_pred HhcCCCEEEeCCCCCc
Confidence 3466667777776665
|
|
| >PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00018 Score=71.35 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=56.9
Q ss_pred hhhhcCCCC-Cchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------Ccceeecc
Q 041082 449 LVLEYMPHG-SLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------NMVAHLSD 519 (639)
Q Consensus 449 Lv~ey~~~g-sL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------~~~~~i~d 519 (639)
+|+||+++- +|.+++.. .....+...+..+...+|+.++-|| ..+|+|+|++++|||++. +..+.+.|
T Consensus 112 LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LID 188 (268)
T PRK15123 112 IITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMH---AAGINHRDCYICHFLLHLPFPGREEDLKLSVID 188 (268)
T ss_pred EEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCccCCCChhhEEEeccccCCCCCceEEEEE
Confidence 677888765 67666532 1122344556789999999999999 778999999999999985 57789999
Q ss_pred cccccc
Q 041082 520 FGMAKL 525 (639)
Q Consensus 520 fgla~~ 525 (639)
|+.++.
T Consensus 189 l~r~~~ 194 (268)
T PRK15123 189 LHRAQI 194 (268)
T ss_pred CCcccc
Confidence 998764
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00076 Score=71.86 Aligned_cols=79 Identities=34% Similarity=0.409 Sum_probs=62.0
Q ss_pred HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 447 ~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.+++.+|..+|.+...+..+.. ++...-.......|-|++++| ...|+|||+|++||++|.+|.+++.|||+++..
T Consensus 72 l~l~ld~~rgg~lft~l~~~~~-f~~~~~~~~~aelaLald~lh---~l~iiyrd~k~enilld~~Ghi~~tdfglske~ 147 (612)
T KOG0603|consen 72 LYLILDFLRGGDLFTRLSKEVM-FDELDVAFYLAELALALDHLH---KLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEA 147 (612)
T ss_pred hhHhhhhcccchhhhccccCCc-hHHHHHHHHHHHHHHHHhhcc---hhHHHHhcccccceeecccCccccCCchhhhHh
Confidence 3578899999999888765332 333333334455678999999 888999999999999999999999999999976
Q ss_pred ccc
Q 041082 527 LKE 529 (639)
Q Consensus 527 ~~~ 529 (639)
.+.
T Consensus 148 v~~ 150 (612)
T KOG0603|consen 148 VKE 150 (612)
T ss_pred Hhh
Confidence 543
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00041 Score=68.74 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 470 LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 470 l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
+....|+.+..++.+.++++| ..+++|+|||++|++++.++.+.++||+-..-.+
T Consensus 142 l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g 196 (288)
T PF14531_consen 142 LAFAARLSLTVQMIRLVANLH---SYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAG 196 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEE-TTS-EEE--GGGEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHh---hcceEecccceeeEEEcCCCCEEEcChHHHeecC
Confidence 445678888899999999999 6679999999999999999999999998765443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00019 Score=80.37 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=40.1
Q ss_pred CCCCCCEEeccCCcCCc-cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcc-ccCccccCCCCCC
Q 041082 74 NLSSLQTLDLSFNWFSG-SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTG-TIHSSIFNLSSLS 151 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~ 151 (639)
-||+|++|.+++=.+.. ..-.-..+.++|..||+|+.+++.. ..+++|++|+.|.+.+=.+.. ..-..+++|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 44555666555544321 1112233555556666665555433 445555666555554443321 1112345555566
Q ss_pred EEecCCCC
Q 041082 152 DLDLSHNN 159 (639)
Q Consensus 152 ~L~Ls~N~ 159 (639)
.||+|...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 66555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 639 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-25 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-24 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 4e-12 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 9e-12 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 2e-10 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 4e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-09 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 2e-08 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 8e-08 | ||
| 3miy_A | 266 | X-Ray Crystal Structure Of Itk Complexed With Sunit | 9e-08 | ||
| 4hct_A | 269 | Crystal Structure Of Itk In Complex With Compound 5 | 1e-07 | ||
| 3v5j_A | 266 | Crystal Structure Of Interleukin-2 Inducible T-Cell | 1e-07 | ||
| 1sm2_A | 264 | Crystal Structure Of The Phosphorylated Interleukin | 1e-07 | ||
| 3qgw_A | 286 | Crystal Structure Of Itk Kinase Bound To An Inhibit | 2e-07 | ||
| 3t9t_A | 267 | Crystal Structure Of Btk Mutant (F435t,K596r) Compl | 2e-07 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 6e-07 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 7e-07 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 1e-06 | ||
| 3ugc_A | 295 | Structural Basis Of Jak2 Inhibition By The Type Ii | 1e-06 | ||
| 2qok_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 1e-06 | ||
| 3kul_B | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 1e-06 | ||
| 3kul_A | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 2e-06 | ||
| 3jy9_A | 311 | Janus Kinase 2 Inhibitors Length = 311 | 3e-06 | ||
| 2w1i_A | 326 | Structure Determination Of Aurora Kinase In Complex | 3e-06 | ||
| 4hge_A | 300 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 | 3e-06 | ||
| 3tjc_A | 298 | Co-Crystal Structure Of Jak2 With Thienopyridine 8 | 3e-06 | ||
| 3io7_A | 313 | 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel | 3e-06 | ||
| 3dzq_A | 361 | Human Epha3 Kinase Domain In Complex With Inhibitor | 3e-06 | ||
| 3lpb_A | 295 | Crystal Structure Of Jak2 Complexed With A Potent 2 | 3e-06 | ||
| 4e4m_A | 302 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 3 | 3e-06 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 3e-06 | ||
| 2qoc_A | 344 | Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp | 3e-06 | ||
| 3q32_A | 301 | Structure Of Janus Kinase 2 With A Pyrrolotriazine | 3e-06 | ||
| 3e62_A | 293 | Fragment Based Discovery Of Jak-2 Inhibitors Length | 3e-06 | ||
| 3rvg_A | 303 | Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido | 3e-06 | ||
| 2b7a_A | 293 | The Structural Basis Of Janus Kinase 2 Inhibition B | 3e-06 | ||
| 3v5q_A | 297 | Discovery Of A Selective Trk Inhibitor With Efficac | 3e-06 | ||
| 2xa4_A | 298 | Inhibitors Of Jak2 Kinase Domain Length = 298 | 3e-06 | ||
| 2qoi_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 3e-06 | ||
| 2qol_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596:y | 3e-06 | ||
| 4aqc_A | 301 | Triazolopyridine-Based Inhibitor Of Janus Kinase 2 | 3e-06 | ||
| 2qof_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f | 4e-06 | ||
| 2qod_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y602f | 4e-06 | ||
| 2gsf_A | 373 | The Human Epha3 Receptor Tyrosine Kinase And Juxtam | 4e-06 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 4e-06 | ||
| 3fxx_A | 371 | Human Epha3 Kinase And Juxtamembrane Region Bound T | 4e-06 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 4e-06 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 4e-06 | ||
| 4f0f_A | 287 | Crystal Structure Of The Roco4 Kinase Domain Bound | 5e-06 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 5e-06 | ||
| 3qup_A | 323 | Inhibitor Bound Structure Of The Kinase Domain Of T | 6e-06 | ||
| 1ksw_A | 452 | Structure Of Human C-Src Tyrosine Kinase (Thr338gly | 6e-06 | ||
| 4e6d_A | 298 | Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W | 6e-06 | ||
| 1mqb_A | 333 | Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro | 7e-06 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 8e-06 | ||
| 3d7u_B | 277 | Structural Basis For The Recognition Of C-Src By It | 8e-06 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 8e-06 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 8e-06 | ||
| 4bbe_A | 298 | Aminoalkylpyrimidine Inhibitor Complexes With Jak2 | 9e-06 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 9e-06 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 9e-06 | ||
| 4f1o_A | 287 | Crystal Structure Of The L1180t Mutant Roco4 Kinase | 1e-05 | ||
| 2qoo_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 1e-05 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 1e-05 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 1e-05 | ||
| 1yol_A | 283 | Crystal Structure Of Src Kinase Domain In Complex W | 1e-05 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 1e-05 | ||
| 2r2p_A | 295 | Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep | 1e-05 | ||
| 2qq7_A | 286 | Crystal Structure Of Drug Resistant Src Kinase Doma | 1e-05 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 1e-05 | ||
| 3omv_A | 307 | Crystal Structure Of C-Raf (Raf-1) Length = 307 | 1e-05 | ||
| 1yoj_A | 283 | Crystal Structure Of Src Kinase Domain Length = 283 | 2e-05 | ||
| 2hk5_A | 270 | Hck Kinase In Complex With Lck Targetted Inhibitor | 2e-05 | ||
| 1qcf_A | 454 | Crystal Structure Of Hck In Complex With A Src Fami | 2e-05 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 2e-05 | ||
| 2hel_A | 306 | Crystal Structure Of A Mutant Epha4 Kinase Domain ( | 2e-05 | ||
| 2rei_A | 318 | Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep | 2e-05 | ||
| 2qob_A | 344 | Human Epha3 Kinase Domain, Base Structure Length = | 3e-05 | ||
| 1fvr_A | 327 | Tie2 Kinase Domain Length = 327 | 3e-05 | ||
| 2oo8_X | 317 | Synthesis, Structural Analysis, And Sar Studies Of | 3e-05 | ||
| 2of2_A | 271 | Crystal Structure Of Furanopyrimidine 8 Bound To Lc | 3e-05 | ||
| 2ofv_A | 277 | Crystal Structure Of Aminoquinazoline 1 Bound To Lc | 3e-05 | ||
| 3bys_A | 277 | Co-Crystal Structure Of Lck And Aminopyrimidine Ami | 3e-05 | ||
| 2y6m_A | 291 | Crystal Structure Of Epha4 Kinase Domain Length = 2 | 3e-05 | ||
| 2pl0_A | 289 | Lck Bound To Imatinib Length = 289 | 3e-05 | ||
| 2qo7_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Dephos | 3e-05 | ||
| 2hwo_A | 286 | Crystal Structure Of Src Kinase Domain In Complex W | 3e-05 | ||
| 2og8_A | 265 | Crystal Structure Of Aminoquinazoline 36 Bound To L | 4e-05 | ||
| 1py5_A | 326 | Crystal Structure Of Tgf-Beta Receptor I Kinase Wit | 4e-05 | ||
| 1b6c_B | 342 | Crystal Structure Of The Cytoplasmic Domain Of The | 4e-05 | ||
| 2xyu_A | 285 | Crystal Structure Of Epha4 Kinase Domain In Complex | 4e-05 | ||
| 4f1m_A | 287 | Crystal Structure Of The G1179s Roco4 Kinase Domain | 4e-05 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 5e-05 | ||
| 4e4l_A | 302 | Jak1 Kinase (Jh1 Domain) In Complex With Compound 3 | 7e-05 | ||
| 3eyg_A | 290 | Crystal Structures Of Jak1 And Jak2 Inhibitor Compl | 7e-05 | ||
| 3dtc_A | 271 | Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp | 8e-05 | ||
| 3bym_A | 272 | X-Ray Co-Crystal Structure Aminobenzimidazole Triaz | 9e-05 | ||
| 2ofu_A | 273 | X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam | 1e-04 | ||
| 2dq7_X | 283 | Crystal Structure Of Fyn Kinase Domain Complexed Wi | 1e-04 | ||
| 3lck_A | 271 | The Kinase Domain Of Human Lymphocyte Kinase (Lck), | 1e-04 | ||
| 1qpe_A | 279 | Structural Analysis Of The Lymphocyte-Specific Kina | 1e-04 | ||
| 3kxz_A | 287 | The Complex Crystal Structure Of Lck With A Probe M | 1e-04 | ||
| 2zm1_A | 285 | Crystal Structure Of Imidazo Pyrazin 1 Bound To The | 1e-04 | ||
| 3kmm_A | 288 | Structure Of Human Lck Kinase With A Small Molecule | 1e-04 | ||
| 3k54_A | 283 | Structures Of Human Bruton's Tyrosine Kinase In Act | 1e-04 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 1e-04 | ||
| 3s95_A | 310 | Crystal Structure Of The Human Limk1 Kinase Domain | 1e-04 | ||
| 3lxn_A | 318 | Structural And Thermodynamic Characterization Of Th | 1e-04 | ||
| 2wqb_A | 324 | Structure Of The Tie2 Kinase Domain In Complex With | 1e-04 | ||
| 2r7b_A | 312 | Crystal Structure Of The Phosphoinositide-Dependent | 1e-04 | ||
| 3pwy_A | 311 | Crystal Structure Of An Extender (Spd28345)-Modifie | 1e-04 | ||
| 2qon_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 1e-04 | ||
| 3mpm_A | 267 | Lck Complexed With A Pyrazolopyrimidine Length = 26 | 1e-04 | ||
| 3nax_A | 311 | Pdk1 In Complex With Inhibitor Mp7 Length = 311 | 1e-04 | ||
| 3cok_A | 278 | Crystal Structure Of Plk4 Kinase Length = 278 | 1e-04 | ||
| 1h1w_A | 289 | High Resolution Crystal Structure Of The Human Pdk1 | 1e-04 | ||
| 1uu9_A | 286 | Structure Of Human Pdk1 Kinase Domain In Complex Wi | 1e-04 | ||
| 1qpd_A | 279 | Structural Analysis Of The Lymphocyte-specific Kina | 2e-04 | ||
| 1z5m_A | 286 | Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr | 2e-04 | ||
| 2biy_A | 310 | Structure Of Pdk1-S241a Mutant Kinase Domain Length | 2e-04 | ||
| 3nus_A | 286 | Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra | 2e-04 | ||
| 3h9o_A | 311 | Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) | 2e-04 | ||
| 4a07_A | 311 | Human Pdk1 Kinase Domain In Complex With Allosteric | 2e-04 | ||
| 2xck_A | 309 | Crystal Structure Of Pdk1 In Complex With A Pyrazol | 2e-04 | ||
| 4aoj_A | 329 | Human Trka In Complex With The Inhibitor Az-23 Leng | 2e-04 | ||
| 3qc4_A | 314 | Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = | 2e-04 | ||
| 2xch_A | 309 | Crystal Structure Of Pdk1 In Complex With A Pyrazol | 2e-04 | ||
| 3hrc_A | 311 | Crystal Structure Of A Mutant Of Human Pdk1 Kinase | 2e-04 | ||
| 1uu3_A | 310 | Structure Of Human Pdk1 Kinase Domain In Complex Wi | 2e-04 | ||
| 3iop_A | 312 | Pdk-1 In Complex With The Inhibitor Compound-8i Len | 2e-04 | ||
| 3sc1_A | 311 | Novel Isoquinolone Pdk1 Inhibitors Discovered Throu | 2e-04 | ||
| 3g2f_A | 336 | Crystal Structure Of The Kinase Domain Of Bone Morp | 2e-04 | ||
| 3rwp_A | 311 | Discovery Of A Novel, Potent And Selective Inhibito | 2e-04 | ||
| 1yvj_A | 290 | Crystal Structure Of The Jak3 Kinase Domain In Comp | 2e-04 | ||
| 3nay_A | 311 | Pdk1 In Complex With Inhibitor Mp6 Length = 311 | 2e-04 | ||
| 3nun_A | 292 | Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea | 2e-04 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 2e-04 | ||
| 3orx_A | 316 | Pdk1 Mutant Bound To Allosteric Disulfide Fragment | 2e-04 | ||
| 3ggf_A | 301 | Crystal Structure Of Human SerineTHREONINE-Protein | 2e-04 | ||
| 1jpa_A | 312 | Crystal Structure Of Unphosphorylated Ephb2 Recepto | 2e-04 | ||
| 3oct_A | 265 | Crystal Structure Of Bruton's Tyrosine Kinase Mutan | 2e-04 | ||
| 1rw8_A | 301 | Crystal Structure Of Tgf-Beta Receptor I Kinase Wit | 2e-04 | ||
| 3com_A | 314 | Crystal Structure Of Mst1 Kinase Length = 314 | 2e-04 | ||
| 4hvd_A | 314 | Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h | 2e-04 | ||
| 2wot_A | 306 | Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl) | 2e-04 | ||
| 3gen_A | 283 | The 1.6 A Crystal Structure Of Human Bruton's Tyros | 2e-04 | ||
| 3tzm_A | 309 | Tgf-Beta Receptor Type 1 In Complex With Sb431542 L | 2e-04 | ||
| 3pjc_A | 315 | Crystal Structure Of Jak3 Complexed With A Potent A | 2e-04 | ||
| 3pix_A | 274 | Crystal Structure Of Btk Kinase Domain Complexed Wi | 2e-04 | ||
| 3p08_A | 267 | Crystal Structure Of The Human Btk Kinase Domain Le | 2e-04 | ||
| 3lxk_A | 327 | Structural And Thermodynamic Characterization Of Th | 2e-04 | ||
| 1vjy_A | 303 | Crystal Structure Of A Naphthyridine Inhibitor Of H | 2e-04 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 2e-04 | ||
| 3ocs_A | 271 | Crystal Structure Of Bruton's Tyrosine Kinase In Co | 2e-04 | ||
| 1k2p_A | 263 | Crystal Structure Of Bruton's Tyrosine Kinase Domai | 3e-04 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 3e-04 | ||
| 3gvu_A | 292 | The Crystal Structure Of Human Abl2 In Complex With | 3e-04 | ||
| 3nyx_A | 302 | Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T | 3e-04 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 3e-04 | ||
| 4e1z_A | 291 | Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda | 3e-04 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 3e-04 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 3e-04 | ||
| 4e20_A | 290 | Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda | 3e-04 | ||
| 3q4t_A | 322 | Crystal Structure Of Activin Receptor Type-Iia (Acv | 3e-04 | ||
| 2vwu_A | 302 | Ephb4 Kinase Domain Inhibitor Complex Length = 302 | 3e-04 | ||
| 4f0i_A | 300 | Crystal Structure Of Apo Trka Length = 300 | 3e-04 | ||
| 4gt5_A | 306 | Crystal Structure Of The Inactive Trka Kinase Domai | 4e-04 | ||
| 1fot_A | 318 | Structure Of The Unliganded Camp-Dependent Protein | 4e-04 | ||
| 1u59_A | 287 | Crystal Structure Of The Zap-70 Kinase Domain In Co | 4e-04 | ||
| 1ad5_A | 438 | Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | 4e-04 | ||
| 4asz_A | 299 | Crystal Structure Of Apo Trkb Kinase Domain Length | 5e-04 | ||
| 3nz0_A | 302 | Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3 | 5e-04 | ||
| 3zyn_A | 321 | Crystal Structure Of The N-Terminal Leucine Rich Re | 6e-04 | ||
| 4aw5_A | 291 | Complex Of The Ephb4 Kinase Domain With An Oxindole | 6e-04 | ||
| 3zyo_A | 411 | Crystal Structure Of The N-Terminal Leucine Rich Re | 6e-04 | ||
| 3zyj_A | 440 | Netring1 In Complex With Ngl1 Length = 440 | 6e-04 | ||
| 2j7t_A | 302 | Crystal Structure Of Human Serine Threonine Kinase- | 6e-04 | ||
| 4bc6_A | 293 | Crystal Structure Of Human Serine Threonine Kinase- | 7e-04 | ||
| 1yhv_A | 297 | Crystal Structure Of Pak1 Kinase Domain With Two Po | 7e-04 | ||
| 4fk3_A | 292 | B-Raf Kinase V600e Oncogenic Mutant In Complex With | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266 | Back alignment and structure |
|
| >pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269 | Back alignment and structure |
|
| >pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266 | Back alignment and structure |
|
| >pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264 | Back alignment and structure |
|
| >pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295 | Back alignment and structure |
|
| >pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311 | Back alignment and structure |
|
| >pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300 | Back alignment and structure |
|
| >pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298 | Back alignment and structure |
|
| >pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313 | Back alignment and structure |
|
| >pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361 | Back alignment and structure |
|
| >pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295 | Back alignment and structure |
|
| >pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344 | Back alignment and structure |
|
| >pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293 | Back alignment and structure |
|
| >pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297 | Back alignment and structure |
|
| >pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301 | Back alignment and structure |
|
| >pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323 | Back alignment and structure |
|
| >pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452 | Back alignment and structure |
|
| >pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298 | Back alignment and structure |
|
| >pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287 | Back alignment and structure |
|
| >pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295 | Back alignment and structure |
|
| >pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307 | Back alignment and structure |
|
| >pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270 | Back alignment and structure |
|
| >pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306 | Back alignment and structure |
|
| >pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318 | Back alignment and structure |
|
| >pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344 | Back alignment and structure |
|
| >pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327 | Back alignment and structure |
|
| >pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317 | Back alignment and structure |
|
| >pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271 | Back alignment and structure |
|
| >pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277 | Back alignment and structure |
|
| >pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277 | Back alignment and structure |
|
| >pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291 | Back alignment and structure |
|
| >pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289 | Back alignment and structure |
|
| >pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373 | Back alignment and structure |
|
| >pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265 | Back alignment and structure |
|
| >pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342 | Back alignment and structure |
|
| >pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285 | Back alignment and structure |
|
| >pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290 | Back alignment and structure |
|
| >pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271 | Back alignment and structure |
|
| >pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272 | Back alignment and structure |
|
| >pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273 | Back alignment and structure |
|
| >pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283 | Back alignment and structure |
|
| >pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271 | Back alignment and structure |
|
| >pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287 | Back alignment and structure |
|
| >pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285 | Back alignment and structure |
|
| >pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288 | Back alignment and structure |
|
| >pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310 | Back alignment and structure |
|
| >pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318 | Back alignment and structure |
|
| >pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324 | Back alignment and structure |
|
| >pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312 | Back alignment and structure |
|
| >pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311 | Back alignment and structure |
|
| >pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267 | Back alignment and structure |
|
| >pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311 | Back alignment and structure |
|
| >pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278 | Back alignment and structure |
|
| >pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289 | Back alignment and structure |
|
| >pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286 | Back alignment and structure |
|
| >pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286 | Back alignment and structure |
|
| >pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310 | Back alignment and structure |
|
| >pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286 | Back alignment and structure |
|
| >pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311 | Back alignment and structure |
|
| >pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311 | Back alignment and structure |
|
| >pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309 | Back alignment and structure |
|
| >pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329 | Back alignment and structure |
|
| >pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314 | Back alignment and structure |
|
| >pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309 | Back alignment and structure |
|
| >pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311 | Back alignment and structure |
|
| >pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310 | Back alignment and structure |
|
| >pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312 | Back alignment and structure |
|
| >pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311 | Back alignment and structure |
|
| >pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311 | Back alignment and structure |
|
| >pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290 | Back alignment and structure |
|
| >pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311 | Back alignment and structure |
|
| >pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316 | Back alignment and structure |
|
| >pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301 | Back alignment and structure |
|
| >pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312 | Back alignment and structure |
|
| >pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265 | Back alignment and structure |
|
| >pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314 | Back alignment and structure |
|
| >pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314 | Back alignment and structure |
|
| >pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306 | Back alignment and structure |
|
| >pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283 | Back alignment and structure |
|
| >pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309 | Back alignment and structure |
|
| >pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315 | Back alignment and structure |
|
| >pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274 | Back alignment and structure |
|
| >pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267 | Back alignment and structure |
|
| >pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327 | Back alignment and structure |
|
| >pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271 | Back alignment and structure |
|
| >pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292 | Back alignment and structure |
|
| >pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290 | Back alignment and structure |
|
| >pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322 | Back alignment and structure |
|
| >pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302 | Back alignment and structure |
|
| >pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300 | Back alignment and structure |
|
| >pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318 | Back alignment and structure |
|
| >pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287 | Back alignment and structure |
|
| >pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | Back alignment and structure |
|
| >pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299 | Back alignment and structure |
|
| >pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302 | Back alignment and structure |
|
| >pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321 | Back alignment and structure |
|
| >pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291 | Back alignment and structure |
|
| >pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411 | Back alignment and structure |
|
| >pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440 | Back alignment and structure |
|
| >pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302 | Back alignment and structure |
|
| >pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293 | Back alignment and structure |
|
| >pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297 | Back alignment and structure |
|
| >pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 299 bits (769), Expect = 6e-92
Identities = 114/363 (31%), Positives = 177/363 (48%), Gaps = 22/363 (6%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L++S + ++ IP LG+ S+LQ LD+S N SG +I + L + ++N G
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDV------QIPN 167
IP L L+ L L N TG I + +L+ LDLS N+
Sbjct: 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 168 LENLLLWGNNFSGAIP-HFIFNASKLSILELQKNSFFDLIPNTFGNL-INLKRLNLYDNY 225
LE+L L NNFSG +P + L +L+L N F +P + NL +L L+L N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 226 LTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285
+ + L+ + N +G I +SN + L +++L+ N
Sbjct: 380 FSGPILPNLCQNPKNT----------LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345
L+G+IP +L L KL+ L N LEG IP E + +L L L N L+G IP+ N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 346 TSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405
T+L +SL +N+L IP + L+++ L LS+N F +P E+G+ + L+ +DL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 406 FSG 408
F+G
Sbjct: 550 FNG 552
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 8e-87
Identities = 109/405 (26%), Positives = 177/405 (43%), Gaps = 41/405 (10%)
Query: 24 DPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLT---STIPSELGNLSSLQT 80
N L +W+++ C + GV+C +VT++++S L S + S L +L+ L++
Sbjct: 25 PDKNLLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81
Query: 81 LDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPE--ELGNLAELETLWLQNNFLTG 138
L LS + +GS+ +SL S+ + N+L G + LG+ + L+ L + +N L
Sbjct: 82 LFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 139 TIHSSIF-NLSSLSDLDLSHNNLT---------DVQIPNLENLLLWGNNFSGAIPHFIFN 188
S L+SL LDLS N+++ L++L + GN SG + +
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198
Query: 189 ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
L L++ N+F IP G+ L+ L++ N L+ ++S C
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR-----AISTCT----- 247
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVD 307
L++ ++ + G I L +L + LA NK G IP L L L
Sbjct: 248 --ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTL 366
N G +P F + L L LS N SG +P L++L L N+ +P +L
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 367 WNLKDIL-YLNLSSNFFISPLPLEIGN--LKVLVGIDLSMNNFSG 408
NL L L+LSSN F P+ + L + L N F+G
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 2e-82
Identities = 108/372 (29%), Positives = 159/372 (42%), Gaps = 31/372 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
LNIS IP L SLQ L L+ N F+G IP + +L + + N +
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTI-HSSIFNLSSLSDLDLSHNNLTDVQIP------ 166
G +P G+ + LE+L L +N +G + ++ + L LDLS N + ++P
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTNL 366
Query: 167 --NLENLLLWGNNFSGAIPHFIFNASK--LSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
+L L L NNFSG I + K L L LQ N F IP T N L L+L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
NYL+ + P SL + L ++ + G I +E+ + L + L
Sbjct: 427 FNYLSGTIPS-----SLGSLS-------KLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCF 342
N L G IP L L +S +N+L G IP RL +L L LS N SG+IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 343 GNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402
G+ SL L L++N IP+ ++ +++NF + I N + +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 403 MNNFSGFGSIYK 414
N G +
Sbjct: 591 GNLLEFQGIRSE 602
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 7e-82
Identities = 99/370 (26%), Positives = 153/370 (41%), Gaps = 34/370 (9%)
Query: 55 TTLNISGLSLTSTIP-SELGNLSSLQTLDLSFNWFSGSIPSSIF---NMSSLLSIYFNNN 110
LN+S +L S L+SL+ LDLS N SG+ L + + N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 111 TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP---- 166
+ G++ + LE L + +N + I + + S+L LD+S N L+
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAIS 244
Query: 167 ---NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT-FGNLINLKRLNLY 222
L+ L + N F G IP L L L +N F IP+ G L L+L
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI-LEEISNLTNLTAIYL 281
N+ + P +C LE ++ + N SG + ++ + + L + L
Sbjct: 303 GNHFYGAVPP-----FFGSC-------SLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 282 AGNKLNGSIPITLCKL-QKLQLLSFVDNKLEGPIPYEFCR--LASLYELDLSGNKLSGSI 338
+ N+ +G +P +L L L L N GPI C+ +L EL L N +G I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
P N + L L L N L IPS+L +L + L L N +P E+ +K L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 399 IDLSMNNFSG 408
+ L N+ +G
Sbjct: 471 LILDFNDLTG 480
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 272 bits (698), Expect = 9e-82
Identities = 112/369 (30%), Positives = 164/369 (44%), Gaps = 28/369 (7%)
Query: 51 SYRVTTLNISGLSLTSTIPSELGN--LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFN 108
S + TL++S + + I L ++LQ L L N F+G IP ++ N S L+S++ +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 109 NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP-- 166
N L G IP LG+L++L L L N L G I + + +L L L N+LT +IP
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSG 485
Query: 167 -----NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNL 221
NL + L N +G IP +I L+IL+L NSF IP G+ +L L+L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 222 YDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281
N + P ++ + I+G I N +
Sbjct: 546 NTNLFNGTIPA-----AMFKQS-----------GKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 282 AGN--KLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339
AGN + G L +L + G F S+ LD+S N LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGI 399
G+ L IL+L N + IP + +L+ + L+LSSN +P + L +L I
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 400 DLSMNNFSG 408
DLS NN SG
Sbjct: 710 DLSNNNLSG 718
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 4e-75
Identities = 104/339 (30%), Positives = 151/339 (44%), Gaps = 20/339 (5%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L + T IP L N S L +L LSFN+ SG+IPSS+ ++S L + N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNL 168
EIP+EL + LETL L N LTG I S + N ++L+ + LS+N LT ++ NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228
L L N+FSG IP + + L L+L N F IP + N++
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572
Query: 229 STPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288
+ N ++ + + G E+++ L+ + G
Sbjct: 573 KRYV-----YIKNDGMKKECHGAGNLLEF-----QGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348
T + L N L G IP E + L+ L+L N +SGSIP G+ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387
IL L SNKL IP + L + ++LS+N P+P
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 3e-67
Identities = 95/318 (29%), Positives = 135/318 (42%), Gaps = 22/318 (6%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+L++S L+ TIPS LG+LS L+ L L N G IP + + +L ++ + N L G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP-------N 167
EIP L N L + L NN LTG I I L +L+ L LS+N+ + IP +
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRS 539
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227
L L L N F+G IP +F S + N N K + N L
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287
L LS + ++ + G N ++ + ++ N L+
Sbjct: 596 FQGIRSEQLNRLS----------TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347
G IP + + L +L+ N + G IP E L L LDLS NKL G IP T
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 348 LRILSLDSNKLISIIPST 365
L + L +N L IP
Sbjct: 706 LTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-27
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL--LSIYFNNNTL 112
L+++ TIP+ + S ++ N+ +G I N N
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP------ 166
G E+L L+ + + G + N S+ LD+S+N L+ IP
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSM 655
Query: 167 -NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
L L L N+ SG+IP + + L+IL+L N IP L L ++L +N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 226 LTSSTPELSFLYSLSN 241
L+ PE+ +
Sbjct: 716 LSGPIPEMGQFETFPP 731
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ L++S L+ IP E+G++ L L+L N SGSIP + ++ L + ++N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTI 140
G IP+ + L L + L NN L+G I
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPI 720
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-12
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 319 CRLASLYELDLSGNKLS---GSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYL 375
CR + +DLS L+ ++ + + T L L L ++ + + + L
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105
Query: 376 NLSSNFFISPLP--LEIGNLKVLVGIDLSMNNFSGFGSI 412
+LS N P+ +G+ L +++S N G +
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 2e-68
Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 46/335 (13%)
Query: 17 LKGHVTDDPTNFLAKNWNTSSTVCH--WTGVSCDVR--SYRVTTLNISG--LSLTSTIPS 70
+K + + T L+ +W ++ C+ W GV CD +YRV L++SG L IPS
Sbjct: 14 IKKDLGNPTT--LS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70
Query: 71 ELGNLSSLQTLDLS-FNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
L NL L L + N G IP +I ++ L +Y + + G IP+ L + L TL
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA 189
N L+GT+ SI +L +L + N ++ GAIP +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS------------------GAIPDSYGSF 172
Query: 190 SKLS-ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
SKL + + +N IP TF NL NL ++L N L + K
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV-----LFGSDK----- 221
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308
+ + + +++ + ++ NL + L N++ G++P L +L+ L L+ N
Sbjct: 222 --NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 309 KLEGPIPYEFCRLASLYELDLSGNK-LSGS-IPTC 341
L G IP L + NK L GS +P C
Sbjct: 279 NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 5e-60
Identities = 78/325 (24%), Positives = 120/325 (36%), Gaps = 62/325 (19%)
Query: 91 SIPSSIFNMSSLLS----IYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT--IHSSI 144
I + N ++L S N T G + + + L L L I SS+
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 145 FNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD 204
NL L+ L + N N G IP I ++L L + +
Sbjct: 73 ANLPYLNFLYIGGIN-----------------NLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 205 LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264
IP+ + L L+ N L SG
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNAL------------------------------------SG 139
Query: 265 GILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKL-QLLSFVDNKLEGPIPYEFCRLAS 323
+ IS+L NL I GN+++G+IP + KL ++ N+L G IP F L +
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198
Query: 324 LYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI 383
L +DLS N L G FG+ + + + L N L + + K++ L+L +N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257
Query: 384 SPLPLEIGNLKVLVGIDLSMNNFSG 408
LP + LK L +++S NN G
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCG 282
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-68
Identities = 73/409 (17%), Positives = 134/409 (32%), Gaps = 50/409 (12%)
Query: 32 NWNTSSTVCHWT---GVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88
NWN + + W GVS + RVT L++ G + +P +G L+ L+ L L +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
Query: 89 SG----SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLA--ELETLWLQNNFLTGTIHS 142
P I S + +L + ++ +I
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177
Query: 143 SIFNLSSLSDLDLSHNNLTDV-----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILEL 197
S + + NN+T V ++ L + + F
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENS 232
Query: 198 QKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSM 257
+ + + NL +L + +Y+ + P L +++ ++
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----FLKALP-------EMQLINV 280
Query: 258 FNCNI--------SGGILEEISNLTNLTAIYLAGNKL-NGSIPITLCKLQKLQLLSFVDN 308
L + + IY+ N L + +L K++KL +L + N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Query: 309 KLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST-LW 367
+LEG +P F L L+L+ N+++ G + LS NKL I
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399
Query: 368 NLKDILYLNLSSNFF-------ISPLPLEIGNLKVLVGIDLSMNNFSGF 409
++ + ++ S N PL + I+LS N S F
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 2e-62
Identities = 58/381 (15%), Positives = 128/381 (33%), Gaps = 51/381 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T + ++T + + L+ L+ + + F + + +
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYK 239
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP-------- 166
+ NL +L + + N + + + L + ++++ N +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 167 ------NLENLLLWGNNF-SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRL 219
++ + + NN + + + KL +LE N +P FG+ I L L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG-GILEEISNLTNLTA 278
NL N +T ++ +E S + + + + +++ ++A
Sbjct: 359 NLAYNQITEIPANFC------------GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406
Query: 279 IYLAGNKLNG-------SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331
I + N++ + T K + ++ +N++ F + L ++L G
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 332 NKLSG-------SIPTCFGNQTSLRILSLDSNKLISIIPS-TLWNLKDILYLNLSSNFFI 383
N L+ F N L + L NKL + L ++ ++LS N F
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Query: 384 SPLPLEIGNLKVLVGIDLSMN 404
P + N L G +
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQ 546
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 5e-61
Identities = 70/381 (18%), Positives = 123/381 (32%), Gaps = 40/381 (10%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF--------SGSIPSSIFNMSSLLSIY 106
T + + + +P+ L L +Q ++++ N + + IY
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 107 FNNNTLF-GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-- 163
N L + L + +L L N L G + + + L+ L+L++N +T++
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPA 370
Query: 164 ----QIPNLENLLLWGNNFSG-AIPHFIFNASKLSILELQKNSF-------FDLIPNTFG 211
+ENL N + S +S ++ N FD + T
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
IN+ +NL +N ++ EL + S + L + N E
Sbjct: 431 KGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNML---TEIPKNSLKDENENFK 485
Query: 272 NLTNLTAIYLAGNKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYEL--- 327
N LT+I L NKL L L + N P + ++L
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544
Query: 328 ---DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384
D GN+ P SL L + SN + + N+ L++ N IS
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKDNPNIS 601
Query: 385 PLPLEIGNLKVLVGIDLSMNN 405
+ L +
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 6e-47
Identities = 54/335 (16%), Positives = 102/335 (30%), Gaps = 44/335 (13%)
Query: 55 TTLNISGLSLTS-TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ I +L + + + L + L L+ +N G +P+ + L S+ N +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT 366
Query: 114 GEIPEELGNLAELETLWLQNNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDV--------- 163
G ++E L +N L ++S +S +D S+N + V
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 164 ----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF-------FDLIPNTFGN 212
+ N+ ++ L N S S LS + L N F N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISN 272
L ++L N LT + + + L + + S + N
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRAT-----------TLPYLVGIDLSYNSFSK-FPTQPLN 534
Query: 273 LTNLTAIYL------AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
+ L + GN+ P + L L N + + + ++
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISV 591
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI 361
LD+ N + + L +K I
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-29
Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 16/227 (7%)
Query: 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247
+ +++ L L+ +P+ G L L+ L L + + L +S
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER-LFGPKGISAN----- 132
Query: 248 SSQSLEVFSMFNCNISGGILEEIS--NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSF 305
S E + ++ + ++L + + SI + K +
Sbjct: 133 --MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190
Query: 306 VDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365
+ N + + RL L + + + + + +
Sbjct: 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-----NENSEYAQQYKTEDLK 244
Query: 366 LWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
NLKD+ + + + ++ LP + L + I+++ N +
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 8e-15
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTL------DLSFNWFSGSIPSSIFNMSSLLSIYFN 108
+++S S + P++ N S+L+ D N P I SL +
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 109 NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ 164
+N + ++ E++ + L +++N S + L ++ D++
Sbjct: 575 SNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 4/96 (4%)
Query: 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLN 376
+ + + + + + + LSL+ +P + L ++ L
Sbjct: 52 FGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLA 111
Query: 377 LSSNFFISP----LPLEIGNLKVLVGIDLSMNNFSG 408
L S+ P I ++
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 8e-60
Identities = 87/381 (22%), Positives = 141/381 (37%), Gaps = 32/381 (8%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+T LN++ L + S L +LD+ FN S P + L + +N L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPN 167
+ L L L +N + ++ +L LDLSHN L+ Q+ N
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 168 LENLLLWGNNFSGAIPHFI--FNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
L+ LLL N + F S L LEL N + P F + L L L +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 226 LTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL--TNLTAIYLAG 283
L S E LE ++ S+ S+ N +S L TNLT + L+
Sbjct: 207 LGPSLTEKLC---------LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN---------KL 334
N LN + L +L+ N ++ + L ++ L+L + L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 335 SGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF----ISPLPLEI 390
F L L+++ N + I + L ++ YL+LS++F ++
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 391 GNLKVLVGIDLSMNNFSGFGS 411
L ++L+ N S S
Sbjct: 378 LAHSPLHILNLTKNKISKIES 398
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 7e-59
Identities = 82/379 (21%), Positives = 141/379 (37%), Gaps = 31/379 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS--SIFNMSSLLSIYFNNNTL 112
TL++S L+ST L +LQ L LS N IF SSL + ++N +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF---NLSSLSDLDLSHNNLTDV------ 163
P + L L+L N L ++ + +S+ +L LS++ L+
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Query: 164 --QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNL 221
+ NL L L NN + +L L+ N+ L ++ L N++ LNL
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 222 YDNYLTSSTPELSF----LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277
++ S S +S K LE +M + +I G + L NL
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLK-------CLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 278 AIYLAGNKLNGSIPITL----CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
+ L+ + + L +L+ NK+ F L L LDL N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 334 LSGSIP-TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF--ISPLPLEI 390
+ + + ++ + L NK + + ++ + + L L + P
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 391 GNLKVLVGIDLSMNNFSGF 409
L+ L +DLS NN +
Sbjct: 477 QPLRNLTILDLSNNNIANI 495
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-56
Identities = 76/369 (20%), Positives = 136/369 (36%), Gaps = 45/369 (12%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+ S L LT +P +L +++ L+L+ N ++ S L S+ NT+
Sbjct: 7 EVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
PE L L+ L LQ+N L+ + ++L++L L N++ +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI----------- 112
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234
+ L L+L N T L NL+ L L +N + + E
Sbjct: 113 -------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165
Query: 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL 294
+++ S SL+ + + I + L ++L +L S+ L
Sbjct: 166 DIFANS----------SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Query: 295 C---KLQKLQLLSFVDNKLEGPIPYEF--CRLASLYELDLSGNKLSGSIPTCFGNQTSLR 349
C ++ LS +++L F + +L LDLS N L+ F L
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275
Query: 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL---------PLEIGNLKVLVGID 400
L+ N + + +L L ++ YLNL +F + LK L ++
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Query: 401 LSMNNFSGF 409
+ N+ G
Sbjct: 336 MEDNDIPGI 344
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 4e-54
Identities = 77/390 (19%), Positives = 129/390 (33%), Gaps = 43/390 (11%)
Query: 50 RSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNN 109
+ +T L++S +L L L+ L +N S+ + ++ +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 110 N---------TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNL 160
+ +L L LE L +++N + G + L +L L LS++
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 161 TDVQIPN----------LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NT 209
+ + N L L L N S L +L+L N +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG--GIL 267
+ L N+ + L N T S + SL+ + +
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRN-----SFALV-------PSLQRLMLRRVALKNVDSSP 473
Query: 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE--------GPIPYEFC 319
L NLT + L+ N + L L+KL++L N L G Y
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533
Query: 320 RLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSS 379
L+ L+ L+L N F + L+I+ L N L ++ S N + LNL
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 380 NFFISPLPLEIG-NLKVLVGIDLSMNNFSG 408
N S G + L +D+ N F
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-44
Identities = 63/321 (19%), Positives = 115/321 (35%), Gaps = 23/321 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFS-GSIPSSIF---NMSSLLSIYFNNN 110
LN+ + + L +L+ L LS ++ S ++ + F S L + N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 111 TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDV------ 163
+ + L LE L L N + + + L ++ ++ LS+N +
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 164 QIPNLENLLLWGNNFSG--AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNL 221
+P+L+ L+L + P L+IL+L N+ ++ + L L+ L+L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511
Query: 222 YDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281
N L + + K L L + ++ + +E +L L I L
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGL----SHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567
Query: 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR-LASLYELDLSGNKLSGSIPT 340
N LN L+ L+ N + F +L ELD+ N + +
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
Query: 341 CFG-----NQTSLRILSLDSN 356
N+T I L S+
Sbjct: 628 IAWFVNWINETHTNIPELSSH 648
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 17/198 (8%)
Query: 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL 273
++ + + LT +L ++ V ++ + + +
Sbjct: 4 VSHEVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRY 48
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
+ LT++ + N ++ P KL L++L+ N+L F +L EL L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 334 LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF--ISPLPLEIG 391
+ F Q +L L L N L S T L+++ L LS+N + L+I
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 392 NLKVLVGIDLSMNNFSGF 409
L ++LS N F
Sbjct: 169 ANSSLKKLELSSNQIKEF 186
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 9e-54
Identities = 73/420 (17%), Positives = 137/420 (32%), Gaps = 50/420 (11%)
Query: 32 NWNTSSTVCHW---TGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88
NWN + + W GV D RVT L+++G +P +G L+ L+ L +
Sbjct: 301 NWNFNKELDMWGDQPGVDLDNNG-RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359
Query: 89 SGSIPSSIFNMSSLLSIYFNNNTLFGEIPE-----------------------ELGNLAE 125
+ S + + + + E+ + +
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 126 LETLWLQNNFLTG------TIHSSIFNLSSLSDLDLSHNNLTDVQIP-NLENLLLWGNNF 178
+ L++ + I +I L+ L + +++ T I + E+
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479
Query: 179 SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238
N L+ +EL +P+ +L L+ LN+ N S+ +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 239 LSNCKYLEQSSQSLEVFSMFNCNISG-GILEEISNLTNLTAIYLAGNKLNGSIPITLCKL 297
L++ E + +++F M N+ + + L + NK+
Sbjct: 540 LAD---DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTN 594
Query: 298 QKLQLLSFVDNKLEGPIPYEFCRLAS-LYELDLSGNKLSGSIPTCF--GNQTSLRILSLD 354
KL L N++E IP +FC + L S NKL IP F + + +
Sbjct: 595 VKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652
Query: 355 SNKLISIIPSTL-----WNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
NK+ S + + + + LS N + I LS N +
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 4e-53
Identities = 55/404 (13%), Positives = 115/404 (28%), Gaps = 61/404 (15%)
Query: 57 LNISGLS-LTSTIPSELGNLSSLQTLDLS-------------------FNWFSGSIPSSI 96
I L+ + I + L+ LQ + + + + S
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487
Query: 97 FNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTG---------TIHSSIFNL 147
N+ L + N ++P+ L +L EL++L + N +
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 148 SSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN 200
+ + +NNL + ++ L L N KL+ L+L N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN 605
Query: 201 SFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260
++ + ++ L N L P + S+ ++ S +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEG---- 660
Query: 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE-------GP 313
+ + N + + L+ N++ + + +N + P
Sbjct: 661 -RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719
Query: 314 IPYEFCRLASLYELDLSGNKLSGSIPT--CFGNQTSLRILSLDSNKLISIIPSTLWNLKD 371
+ L +DL NKL+ S+ L + + N S P+ N
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQ 777
Query: 372 ILYLNLSSNFFIS------PLPLEIGNLKVLVGIDLSMNNFSGF 409
+ + P I L+ + + N+
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 1e-49
Identities = 67/384 (17%), Positives = 119/384 (30%), Gaps = 48/384 (12%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSG---------SIPSSIFNMSSLLSI 105
T + + + +P L +L LQ+L+++ N + +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 106 YFNNNTLFGEIPEE--LGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV 163
Y N L E P L + +L L +N + + + L+DL L +N + ++
Sbjct: 554 YMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVR-HL-EAFGTNVKLTDLKLDYNQIEEI 610
Query: 164 ------QIPNLENLLLWGNNFSGAIPH--FIFNASKLSILELQKNSFFDLIPNTFG---- 211
+E L N IP+ + + ++ N N
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 212 -NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI 270
IN + L N + EL + S + S+ + N
Sbjct: 670 YKGINASTVTLSYNEIQKFPTEL--FATGSPISTIILSNNLMTSIPE---NSLKPKDGNY 724
Query: 271 SNLTNLTAIYLAGNKLNGSIP--ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELD 328
N LT I L NKL S+ L L + N P + + L
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782
Query: 329 L------SGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
+ GN++ PT SL L + SN + + L L+++ N
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY---ILDIADNPN 839
Query: 383 IS-PLPLEIGNLKVLVGIDLSMNN 405
IS + ++ + L +
Sbjct: 840 ISIDVTSVCPYIEAGM-YVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 5e-39
Identities = 56/393 (14%), Positives = 115/393 (29%), Gaps = 37/393 (9%)
Query: 48 DVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYF 107
D + + + I I + + LD NW S + S +
Sbjct: 248 DNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNK 306
Query: 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV---- 163
+ + +L N + L L G + +I L+ L L ++ T
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 164 ---QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLN 220
++ + F+ +L++ +L +++ + R++
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRIS 424
Query: 221 LYDNYLTSSTPELSFL-YSLSNCKYLEQ------------SSQSLEVFSMFNCNISGGIL 267
L D + + T ++F+ ++ L+ + E +
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP---------IPYEF 318
SNL +LT + L +P L L +LQ L+ N+ + +
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 319 CRLASLYELDLSGNKLSG-SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL 377
+ + N L L +L NK+ + + + L L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA-FGTNVKLTDLKL 602
Query: 378 SSNFFISPLPLEIG-NLKVLVGIDLSMNNFSGF 409
N I +P + + G+ S N
Sbjct: 603 DYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-37
Identities = 55/335 (16%), Positives = 100/335 (29%), Gaps = 47/335 (14%)
Query: 55 TTLNISGLSLTSTIPS-ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ +L S L + L LD N + L + + N
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN-QI 607
Query: 114 GEIPEELGNLA-ELETLWLQNNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDV-------- 163
EIPE+ ++E L +N L + ++ + +D S+N +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 164 ---QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF-------FDLIPNTFGNL 213
+ N + L N S +S + L N + N
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL 273
L ++L N LTS + + + L + S + N
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRA-----------TTLPYLSNMDVSYNCFSS-FPTQPLNS 775
Query: 274 TNLTAIYL------AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYEL 327
+ L A + GN++ P + L L N + + + LY L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYIL 832
Query: 328 DLSGNKL-SGSIPT-CFGNQTSLRILSLDSNKLIS 360
D++ N S + + C + + +L D + I
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 27/198 (13%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFS-------GSIPSSIFNMSSLLSI 105
+T+ +S + S + T+ LS N + + N L +I
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733
Query: 106 YFNNNTLFGEIPEEL--GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV 163
N L + ++ L L + + N + + + N S L + H
Sbjct: 734 DLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH------ 785
Query: 164 QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
GN P I L L++ N + L L++ D
Sbjct: 786 ------QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIAD 836
Query: 224 NYLTSSTPELSFLYSLSN 241
N S S +
Sbjct: 837 NPNISI-DVTSVCPYIEA 853
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355
KL K + + I A LD + + + + +
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKEL 308
Query: 356 NKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
+ L N + L+L+ +P IG L L + ++ + G +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 1e-51
Identities = 69/390 (17%), Positives = 124/390 (31%), Gaps = 44/390 (11%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L++S L + LQ LDLS + ++S L ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP------- 166
L+ L+ L L + I +L +L +L+++HN + ++P
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSI----LELQKNSFFDLIPNTFGNLINLKRLNLY 222
NLE+L L N + ++ + L+L N + P F + L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
+N+ + + + L+ + N+ + L NLT
Sbjct: 209 NNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFR----NEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 283 GNKLNGS---IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS---- 335
L+ I L + S V +E + + L+L K
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPT 321
Query: 336 ---------------GSIPTCFGNQTSLRILSLDSNKL--ISIIPSTLWNLKDILYLNLS 378
G + SL L L N L + + + YL+LS
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
N + + L+ L +D +N
Sbjct: 382 FN-GVITMSSNFLGLEQLEHLDFQHSNLKQ 410
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 5e-48
Identities = 74/386 (19%), Positives = 122/386 (31%), Gaps = 35/386 (9%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQ----TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110
L++S + S ++L L + +LDLS N + I F L + NN
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNN 210
Query: 111 TLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIFNLSSL--------SDLDLSHNNLT 161
+ + + LA LE L + F+ S+L + L++ +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 162 DVQIP-------NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI 214
I N+ + L + F +N LEL F +L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 215 NLKRLNLYDNYLTSST--PELSFLY-------SLSNCKYLEQSSQSLEVFSMFNCNISGG 265
L + S P L FL C + + SL+ + +
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPI-TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASL 324
+ L L + + L L+ L L F L+SL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 325 YELDLSGNKLSGSIPTC-FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI 383
L ++GN + F +L L L +L + P+ +L + LN+S N F
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 384 SPLPLEIGNLKVLVGIDLSMNNFSGF 409
S L L +D S+N+
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTS 533
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 8e-48
Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 56/398 (14%)
Query: 51 SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFN------------ 98
+L++S + P + L L L N+ S ++ +
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 99 ----------------MSSLLSIYFNNNTL------FGEIPEELGNLAELETLWLQNNFL 136
+ L ++ L +I + L + + L + +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL-LWGNNFSGAIPHFIFNASKLSIL 195
S L+L + L++L L + G + L L
Sbjct: 295 ERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 196 ELQKN--SFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLE 253
+L +N SF + +LK L+L N + + + L + LE
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-------------EQLE 399
Query: 254 VFSMFNCNISGGI-LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312
+ N+ +L NL + ++ + L L++L N +
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 313 PI-PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKD 371
P F L +L LDLS +L PT F + +SL++L++ N S+ L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 372 ILYLNLSSNFFISPLPLEIGNL-KVLVGIDLSMNNFSG 408
+ L+ S N ++ E+ + L ++L+ N+F+
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 1e-45
Identities = 75/379 (19%), Positives = 118/379 (31%), Gaps = 44/379 (11%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T L+ IP L S + LDLSFN S F+ L + + +
Sbjct: 10 ITYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNL 168
+L+ L TL L N + + LSSL L NL ++ + L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 169 ENLLLWGNNF-SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLK----RLNLYD 223
+ L + N S +P + N + L L+L N + L + L+L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEE-ISNLTNLTAIYLA 282
N + P L ++ N S +++ I L L L
Sbjct: 187 NPMNFIQPGAF-------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 283 GNKLNGSIPI------TLCKLQKLQLLSFVDNKLE---GPIPYEFCRLASLYELDLSGNK 333
+ + L L L + F L+ I F L ++ L
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 334 LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNL 393
+ F + L L + K L +LK + + + S +L
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDL 346
Query: 394 KVLVGIDLSMNNFSGFGSI 412
L +DLS N S G
Sbjct: 347 PSLEFLDLSRNGLSFKGCC 365
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+T L++S L P+ +LSSLQ L++S N F ++SL + ++ N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 113 FGEIPEELGNLAE-LETLWLQNNFLTGTIHSSIF--NLSSLSDLDLSHNNLTDVQIPNLE 169
+EL + L L L N T F + L + + + +
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590
Query: 170 NLLL 173
+ +
Sbjct: 591 GMPV 594
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 9e-51
Identities = 66/366 (18%), Positives = 118/366 (32%), Gaps = 19/366 (5%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L S L + + L +L LDL+ + + L ++ N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPN 167
L L+ L+ ++ + N +L L L N+++ +
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNS-FFDLIPNTFGNLINLKRLNLYDNYL 226
L+ L N + + + + L L N I + + LN
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
+ ++ + E +IS + E + + ++ +I L +
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDE-------DISPAVFEGLCEM-SVESINLQKHYF 266
Query: 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT 346
T LQ L L +P L++L +L LS NK N
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 347 SLRILSLDSNKLI-SIIPSTLWNLKDILYLNLSSNF--FISPLPLEIGNLKVLVGIDLSM 403
SL LS+ N + L NL+++ L+LS + L++ NL L ++LS
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 404 NNFSGF 409
N
Sbjct: 386 NEPLSL 391
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-50
Identities = 85/373 (22%), Positives = 126/373 (33%), Gaps = 31/373 (8%)
Query: 53 RVTTLNISGLSLTSTIPSELGN--LSSLQTLDLSFNWFSGSIPSSIFNMS--SLLSIYFN 108
+LN G I L N + SL P+ + S+ SI
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 109 NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----- 163
+ F + L+ L L L+ + S + LS+L L LS N ++
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321
Query: 164 -QIPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKN--SFFDLIPNTFGNLINLKRL 219
P+L +L + GN + N L L+L + D NL +L+ L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-SNLTNLTA 278
NL N S E + C LE+ + + + NL L
Sbjct: 382 NLSYNEPLSLKTE-----AFKEC-------PQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPI---PYEFCRLASLYELDLSGNKLS 335
+ L+ + L+ S L LQ L+ N L L L LS LS
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 336 GSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKV 395
F + + + L N+L S L +LK +YLNL+SN LP + L
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSLLPILSQ 548
Query: 396 LVGIDLSMNNFSG 408
I+L N
Sbjct: 549 QRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-50
Identities = 76/371 (20%), Positives = 127/371 (34%), Gaps = 30/371 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L ++S L N +L++L L N S F L + F NN +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 115 EIPEELGNLAELE--TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--------Q 164
E++ +L + +L L N + I F+ + L+ V
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 165 IPNLENLLLWGNNFSGAIPHFIFNASKLSI--LELQKNSFFDLIPNTFGNLINLKRLNLY 222
I +L + P ++S+ + LQK+ FF++ NTF L+ L+L
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
+L+ L L +L+ + SN +LT + +
Sbjct: 287 ATHLSELPSGLVGL-------------STLKKLVLSANKFENLCQISASNFPSLTHLSIK 333
Query: 283 GNKLNGSI-PITLCKLQKLQLLSFVDNKLE--GPIPYEFCRLASLYELDLSGNKLSGSIP 339
GN + L L+ L+ L + +E + L+ L L+LS N+
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 340 TCFGNQTSLRILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
F L +L L +L S NL + LNLS + L L
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 399 IDLSMNNFSGF 409
++L N+F
Sbjct: 454 LNLQGNHFPKG 464
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 7e-49
Identities = 69/368 (18%), Positives = 129/368 (35%), Gaps = 26/368 (7%)
Query: 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115
T N L L IP L +S + L+ SFN ++ + +L + ++
Sbjct: 16 TYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLE 169
+ + L+TL L N L +++ +L L ++ + LE
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
+L L N+ S F KL +L+ Q N+ L +L L+L N +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISN--LTNLTAIYLAGNKLN 287
E S + + I + + N + +L
Sbjct: 193 GIEPGAFDSA-----------VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241
Query: 288 GSIPITLCKLQKLQL--LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345
P L ++ + ++ + F + L ELDL+ LS +P+
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300
Query: 346 TSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE-IGNLKVLVGIDLSMN 404
++L+ L L +NK ++ + N + +L++ N L + NL+ L +DLS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 405 NFSGFGSI 412
+
Sbjct: 361 DIETSDCC 368
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 4e-47
Identities = 68/375 (18%), Positives = 135/375 (36%), Gaps = 31/375 (8%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQ--TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110
++ L+ ++ ++ +L +L+L+ N I F+ + S+ F
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGT 212
Query: 111 TLFGEIPEELGN--LAELETLWLQNNFLTGTIHSSIFNLSSLS--DLDLSHNNLTDVQ-- 164
I + L N + L ++ + L +S ++L + ++
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 165 ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLN 220
L+ L L + S +P + S L L L N F +L + N +L L+
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 221 LYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL--EEISNLTNLTA 278
+ N ++ ++L + + +I ++ NL++L +
Sbjct: 332 IKGNTKRLELGTGCL-----------ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG-PIPYEFCRLASLYELDLSGNKLSGS 337
+ L+ N+ + +L+LL +L+ F L L L+LS + L S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440
Query: 338 IPTCFGNQTSLRILSLDSNKLISII---PSTLWNLKDILYLNLSSNFFISPLPLEIGNLK 394
F +L+ L+L N ++L L + L LS S +LK
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 395 VLVGIDLSMNNFSGF 409
++ +DLS N +
Sbjct: 501 MMNHVDLSHNRLTSS 515
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 6e-39
Identities = 71/295 (24%), Positives = 115/295 (38%), Gaps = 21/295 (7%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+ L+++ L+ +PS L LS+L+ L LS N F S N SL + NT
Sbjct: 279 GLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGTIHS--SIFNLSSLSDLDLSHNNLTDVQ----- 164
E+ L NL L L L ++ + + + NLS L L+LS+N ++
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 165 -IPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
P LE L L F N L +L L + F L L+ LNL
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
N+ + + SL LE+ + C++S ++L + + L+
Sbjct: 458 GNHFPKGNIQKT--NSLQTLG-------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGS 337
N+L S L L+ + L + N + +P L+ ++L N L +
Sbjct: 509 HNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
R+ L +S L+S +L + +DLS N + S + + + +N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHI 535
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF--------------------NLSSLSD 152
+P L L++ T+ L+ N L T + F N L
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595
Query: 153 LDLSHNNLT 161
+ LS L+
Sbjct: 596 VRLSDVTLS 604
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-45
Identities = 64/385 (16%), Positives = 117/385 (30%), Gaps = 33/385 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSG-SIPSSIFNMSSLLSIYFNNNTLF 113
L L S +G L +L+ L+++ N+ +P+ N+++L+ + + N +
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 114 GEIPEELGNLAEL----ETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------ 163
+L L E +L + N + I F L +L L N +
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225
Query: 164 -QIPNLENLLLWGNNFSGAIPHFIFNASKLS--------ILELQKNSFFDLIPNTFGNLI 214
+ L L F IF S + L + F F L
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 215 NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN------CNISGGILE 268
N+ ++L + ++ + + + + + G I
Sbjct: 286 NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF 344
Query: 269 EISNLTNLTAIYLAGNKLNGSIPITL--CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
+ L +L+ + L+ N L+ S + L+ L N + F L L
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403
Query: 327 LDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISP 385
LD + L F + L L + L + L ++ N F
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463
Query: 386 LPLEI-GNLKVLVGIDLSMNNFSGF 409
+ N L +DLS
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQI 488
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 3e-43
Identities = 75/394 (19%), Positives = 128/394 (32%), Gaps = 45/394 (11%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+++S L N S LQ LDLS + + L ++ N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP------- 166
P L LE L L I L +L L+++HN + ++P
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSI----LELQKNSFFDLIPNTFGNLINLKRLNLY 222
NL ++ L N + + + L++ N + F + L L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSL----------------------EVFSMFNC 260
N+ +S+ + +L+ + F +
Sbjct: 213 GNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271
Query: 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR 320
N + + L N++A+ LAG + + K K Q LS + +L+ +
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLD 326
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK--DILYLNLS 378
L L L L+ NK S S SL L L N L + +L + +L+LS
Sbjct: 327 LPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
N I + L+ L +D +
Sbjct: 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-42
Identities = 65/369 (17%), Positives = 115/369 (31%), Gaps = 33/369 (8%)
Query: 55 TTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIFNMS--------SLLSI 105
L + G +S I L NL+ L L F IF S ++
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-- 163
F + + LA + + L + + L + L
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPT 324
Query: 164 -QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL--INLKRLN 220
+P L++L L N S I LS L+L +N+ ++ +L +L+ L+
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 221 LYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI-LEEISNLTNLTAI 279
L N + L + L+ + + +L L +
Sbjct: 383 LSFNGAIIMSANFMGL-------------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGNKLSGSI 338
++ L L L N + F +L LDLS +L
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
F L++L++ N L+ + S L + L+ S N + + K L
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Query: 399 IDLSMNNFS 407
+L+ N+ +
Sbjct: 550 FNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-38
Identities = 69/393 (17%), Positives = 118/393 (30%), Gaps = 49/393 (12%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T L+ +P ++ SS + +DLSFN S N S L + + +
Sbjct: 14 ITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNL 168
+ L L L L N + S L+SL +L L ++ + L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 169 ENLLLWGNNFSGA-IPHFIFNASKLSILELQKNSFFDLIPNTFGNL-------------- 213
+ L + N +P + N + L ++L N + N L
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 214 -------------INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260
I L L L N+ +S+ + +L+ +
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLE- 248
Query: 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR 320
I+E + ++T L + L + +S ++
Sbjct: 249 IFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L + +L P + L+ L+L NK I L + YL+LS N
Sbjct: 308 --KWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRN 360
Query: 381 F--FISPLPLEIGNLKVLVGIDLSMNNFSGFGS 411
F L +DLS N +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-36
Identities = 64/319 (20%), Positives = 111/319 (34%), Gaps = 30/319 (9%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+ ++ + S + L+++ + L+ S + S+
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV--SIKYLEDVPKHFKWQSLSIIRC-Q 318
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------- 164
+ P +L L++L L N + I L SLS LDLS N L+
Sbjct: 319 LKQFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 165 IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYD 223
+L +L L N + +L L+ Q ++ + + F +L L L++
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-SNLTNLTAIYLA 282
L++ L M + L + +N TNLT + L+
Sbjct: 434 TNTKIDFDG--IFLGLTS----------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCF 342
+L L +LQLL+ N L + +L SL LD S N++ S
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Query: 343 GNQTSLRILSLDSNKLISI 361
SL +L +N + I
Sbjct: 542 HFPKSLAFFNLTNNSVACI 560
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 3/132 (2%)
Query: 55 TTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
TL ++G S S N ++L LDLS + L + ++N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
L L TL N + + SL+ +L++N++ I + L
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA--CICEHQKFLQ 568
Query: 174 WGNNFSGAIPHF 185
W + +
Sbjct: 569 WVKEQKQFLVNV 580
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 1e-44
Identities = 78/362 (21%), Positives = 142/362 (39%), Gaps = 39/362 (10%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
TL + P +L+ L + + + S+ + +
Sbjct: 3 ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-- 56
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLEN 170
+ + L LE L L N +T S + NL L++L + N +TD+ + NL
Sbjct: 57 ASIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISALQNLTNLRE 114
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
L L +N S P + N +K+ L L N + N+ L L + ++ + T
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT 171
Query: 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI 290
P ++N L S+ I + +++LT+L N++
Sbjct: 172 P-------IANLT-------DLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDIT 215
Query: 291 PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350
P + + +L L +NK+ P L+ L L++ N++S I + T L++
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLTKLKM 269
Query: 351 LSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410
L++ SN++ I S L NL + L L++N + IG L L + LS N+ +
Sbjct: 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 411 SI 412
+
Sbjct: 328 PL 329
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-44
Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 39/358 (10%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ S+T + L S+ L ++ + I +++L + N N +
Sbjct: 24 GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT 79
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLE 169
P L NL +L L++ N +T S++ NL++L +L L+ +N++D+ + +
Sbjct: 80 DISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLANLTKMY 135
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
+L L N+ + + N + L+ L + ++ D+ P NL +L L+L N +
Sbjct: 136 SLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED- 191
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS 289
+S L SL++ L F+ + I+ + ++N+T L ++ + NK+
Sbjct: 192 ---ISPLASLTS----------LHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL 236
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLR 349
P L L +L L N++ L L L++ N++S N + L
Sbjct: 237 SP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLN 290
Query: 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
L L++N+L + + L ++ L LS N PL +L + D +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIK 346
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-43
Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 45/372 (12%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
VTTL L + S + L++L ++ S N + P + N++ L+ I NNN +
Sbjct: 48 VTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI- 102
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLE 169
L NL L L L NN +T + NL++L+ L+LS N ++D+ + +L+
Sbjct: 103 -ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQ 159
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
L GN + P + N + L L++ N D+ L NL+ L +N ++
Sbjct: 160 QLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD- 213
Query: 230 TPELSFLYSLSNCKYLEQSS------------QSLEVFSMFNCNISGGILEEISNLTNLT 277
++ L L+N L + +L + N IS L +S LT LT
Sbjct: 214 ---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 268
Query: 278 AIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGS 337
+ L N+++ P L L L L +N+LE P L +L L L N +S
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 338 IPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLV 397
P + T L+ L +NK+ + L NL +I +L+ N P + NL +
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRIT 378
Query: 398 GIDLSMNNFSGF 409
+ L+ ++
Sbjct: 379 QLGLNDQAWTNA 390
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 7e-42
Identities = 83/374 (22%), Positives = 149/374 (39%), Gaps = 43/374 (11%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+ ++ + P L NL++L L L N + P + N+++L + ++NT+
Sbjct: 93 VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-- 146
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLEN 170
L L L+ L N + NL++L LD+S N ++D+ ++ NLE+
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISVLAKLTNLES 203
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
L+ N S P + + L L L N D+ +L NL L+L +N +++
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN-- 257
Query: 231 PELSFLYSLSNCKYLEQSS------------QSLEVFSMFNCNISGGILEEISNLTNLTA 278
L+ L L+ L+ + +L + + + ISNL NLT
Sbjct: 258 --LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTY 313
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI 338
+ L N ++ P++ L KLQ L F +NK+ L ++ L N++S
Sbjct: 314 LTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT 369
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
P N T + L L+ + + N+ I + + P I +
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVS-IPNTVKNVTGALIA-PATISDGGSYTE 425
Query: 399 IDLSMNNFSGFGSI 412
D++ N S +
Sbjct: 426 PDITWNLPSYTNEV 439
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-39
Identities = 81/364 (22%), Positives = 154/364 (42%), Gaps = 42/364 (11%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+ + I+ + + I + L+ L + ++ ++ + ++ + +
Sbjct: 2 PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNL 168
+ + + L L + NN LT + + NL+ L D+ +++N + D+ + NL
Sbjct: 59 --KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 114
Query: 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228
L L+ N + P + N + L+ LEL N+ D+ L +L++L+ +
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ---- 166
Query: 229 STPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288
++ L L+N +LE + + +S + ++ LTNL ++ N+++
Sbjct: 167 ----VTDLKPLANLT-------TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD 213
Query: 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348
P L L L LS N+L+ L +L +LDL+ N++S P T L
Sbjct: 214 ITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKL 267
Query: 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
L L +N++ +I P L L + L L+ N P I NLK L + L NN S
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323
Query: 409 FGSI 412
+
Sbjct: 324 ISPV 327
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 9e-39
Identities = 84/367 (22%), Positives = 154/367 (41%), Gaps = 36/367 (9%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T L + +T P L NL++L L+LS N S S++ ++SL + F N
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD- 169
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLEN 170
+ L NL LE L + +N ++ S + L++L L ++N ++D+ + NL+
Sbjct: 170 --LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDE 225
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
L L GN + + + L+ L+L N +L P L L L L N +++ +
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281
Query: 231 P-----ELSFLYSLSNCKYLEQSS----QSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281
P L+ L L+ + + S ++L +++ NIS + +S+LT L ++
Sbjct: 282 PLAGLTALTNLE-LNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFF 338
Query: 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTC 341
NK++ +L L + LS N++ P L + +L L+ + +
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394
Query: 342 FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDL 401
N + + + LI+ P+T+ + +++ N S V I
Sbjct: 395 KANVSIPNTVKNVTGALIA--PATISDGGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGK 451
Query: 402 SMNNFSG 408
FSG
Sbjct: 452 GTTTFSG 458
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 33/134 (24%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L+ ++ P L NL+ + L L+ ++ + + N+S ++ L
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-- 411
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-----QIPNLE 169
++I + S ++ D++ N +
Sbjct: 412 ------------------------IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPV 447
Query: 170 NLLLWGNNFSGAIP 183
+ FSG +
Sbjct: 448 TIGKGTTTFSGTVT 461
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-43
Identities = 63/352 (17%), Positives = 108/352 (30%), Gaps = 57/352 (16%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L G + L D + + +S + I
Sbjct: 15 ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALK 69
Query: 115 EIPEELGNLAE--LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
+ L + + L L++ L F LS L + + L
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM----------- 117
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
+P + + L L L +N L P + +L L+ L++ + PE
Sbjct: 118 --------ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPE 168
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
L++ E L NL ++ L + S+P
Sbjct: 169 -----PLASTD----------------------ASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352
++ LQ L+ L ++ L + L L ELDL G + P FG + L+ L
Sbjct: 201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404
L + +P + L + L+L +S LP I L I + +
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-36
Identities = 51/283 (18%), Positives = 94/283 (33%), Gaps = 30/283 (10%)
Query: 56 TLNISGLSLTSTIPSELGNLSS--LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ L + + L+L P F +S L + + L
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL- 116
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN-LTDVQIPNLENLL 172
E+P+ + A LETL L N L + +SI +L+ L +L + LT++ L +
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-EPLASTD 174
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
L L L+ L P + NL NLK L + ++ L++ P
Sbjct: 175 A---------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPA 224
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
+ L LE + C L + L ++P+
Sbjct: 225 IHHL-------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS 335
+ +L +L+ L +P +L + + + + +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 40/240 (16%), Positives = 75/240 (31%), Gaps = 30/240 (12%)
Query: 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSL 239
G+ H ++S L Q ++ + + + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 240 SN-CKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQ 298
+ + L+ ++ LE + A+ L L P +L
Sbjct: 62 TRTGRALKATADLLE----------------DATQPGRVALELRSVPLP-QFPDQAFRLS 104
Query: 299 KLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358
LQ ++ L +P + A L L L+ N L ++P + LR LS+ +
Sbjct: 105 HLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162
Query: 359 ISIIPSTLWNLKDIL---------YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
++ +P L + L L S LP I NL+ L + + + S
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+L I L++ + + +L L+ LDL + P + L + + +
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT 161
+P ++ L +LE L L+ + S I L + + + +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 13/69 (18%), Positives = 23/69 (33%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L + S T+P ++ L+ L+ LDL +PS I + + I +
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
Query: 115 EIPEELGNL 123
Sbjct: 316 LDQHRPVAR 324
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 6e-39
Identities = 68/354 (19%), Positives = 130/354 (36%), Gaps = 24/354 (6%)
Query: 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAE 125
I S L + + +++ + F N+T+ L + +
Sbjct: 11 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70
Query: 126 LETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNF 178
+E L L + + I + F ++ L + N + + +P L L+L N+
Sbjct: 71 VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 179 SGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE----L 233
S ++P IF N KL+ L + N+ + +TF +L+ L L N LT L
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
N ++E + +I+ ++ LT + L N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRG-PVNVELTILKLQHNNLT-DTA-W 243
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353
L L + N+LE + + F ++ L L +S N+L ++ +L++L L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302
Query: 354 DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
N + + + L L N ++ L++ L + LS N++
Sbjct: 303 SHNH-LLHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 6e-33
Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 60/334 (17%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNT 111
+V LN++ L + ++Q L + FN +P +F N+ L + N
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128
Query: 112 LFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI---P 166
L +P + N +L TL + NN L I F +SL +L LS N LT V + P
Sbjct: 129 L-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
+L + + N S + + L+ NS + + L L L N L
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL 238
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
T + N L + L+ N+L
Sbjct: 239 TD--------------------------------------TAWLLNYPGLVEVDLSYNEL 260
Query: 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT 346
+ K+Q+L+ L +N+L + + +L LDLS N L +
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318
Query: 347 SLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L L LD N ++++ ST LK L LS N
Sbjct: 319 RLENLYLDHNSIVTLKLSTHHTLK---NLTLSHN 349
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
T L + +LT + L N L +DLS+N I F M L +Y +NN L
Sbjct: 229 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL- 284
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI---PNLEN 170
+ + L+ L L +N L + + L +L L HN++ +++ L+N
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN 343
Query: 171 LLLWGNNFSGAIPHFIF-NASKLSILELQ 198
L L N++ +F N ++ ++ +
Sbjct: 344 LTLSHNDWDCNSLRALFRNVARPAVDDAD 372
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 10/191 (5%)
Query: 219 LNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTA 278
YD ++ T ++ F + + + + ++ + N + + + +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFE-------DITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI 338
+ L ++ +Q L N + P+ F + L L L N LS
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
F N L LS+ +N L I T + L LSSN +++ + L
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFH 190
Query: 399 IDLSMNNFSGF 409
++S N S
Sbjct: 191 ANVSYNLLSTL 201
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 2e-38
Identities = 73/387 (18%), Positives = 135/387 (34%), Gaps = 33/387 (8%)
Query: 46 SCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLS 104
SC +LT +P L++ + L LSFN+ ++ +S F + L
Sbjct: 1 SCSFDGR---IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQL 52
Query: 105 IYFNNNTLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTD 162
+ + I +E NL L L L ++ + +H F L L +L L L+D
Sbjct: 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSD 111
Query: 163 VQI--------PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNL 213
+ L L L N H F + L ++ N F + + L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 214 --INLKRLNLYDNYLTSSTPELSFLYSLSNCK-------YLEQSSQSLEVFSMFNCNISG 264
L +L N L S + + ++ + + + ++++ F+ IS
Sbjct: 172 QGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230
Query: 265 GILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL--LSFVDNKLEGPIPYEFCRLA 322
+ ++ + + T L + + L + F L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
L L+L+ NK++ F +L++L+L N L + S + L + Y++L N
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 383 ISPLPLEIGNLKVLVGIDLSMNNFSGF 409
L+ L +DL N +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTI 377
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 4e-37
Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 27/380 (7%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
L +S + + S L LQ L+L + +I F N+ +L + ++ +
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 113 FGEIPEELGNLAELETLWLQNNFLT-GTIHSSIF-NLSSLSDLDLSHNNLTDVQI----- 165
+ P+ L L L L L+ + F NL +L+ LDLS N + + +
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145
Query: 166 --PNLENLLLWGNNFSGAIPHFIFN---ASKLSILELQKNSFFDLIPNTFGNLIN----- 215
+L+++ N + LS L NS + + +G +N
Sbjct: 146 KLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 216 -LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL- 273
L+ L++ N T + + + + NI + L
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264
Query: 274 -TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332
+++ + L+ + L+ L++L+ NK+ F L +L L+LS N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392
L + F + + L N + I T L+ + L+L N + I
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHF 379
Query: 393 LKVLVGIDLSMNNFSGFGSI 412
+ + I LS N I
Sbjct: 380 IPSIPDIFLSGNKLVTLPKI 399
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-32
Identities = 81/402 (20%), Positives = 136/402 (33%), Gaps = 51/402 (12%)
Query: 53 RVTTLNISGLSLTS-TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFN---MSSLLSIYFN 108
+T L++S + S + G L+SL+++D S N + +L
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLA 182
Query: 109 NNTLFGEIPEELGNLAE------LETLWLQNNFLT------------GTIHSSIFNLSSL 150
N+L+ + + G LE L + N T + S+ +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 151 SDLDLSHNNLTDVQI--------PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF 202
+N+ D ++ +L L L +L L N
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 203 FDLIPNTFGNLINLKRLNLYDNYLT-------SSTPELSFLYSLSNCKYLEQSSQSLEVF 255
+ F L NL+ LNL N L P+++++ L Q+ +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID-LQKNHIAIIQDQTFKFL 361
Query: 256 SMFNC-NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG-P 313
++ L I + ++ I+L+GNKL I L L+ +N+LE
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLD 417
Query: 314 IPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLRILSLDSNKL-----ISIIPSTLW 367
I Y R+ L L L+ N+ S S SL L L N L +
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 368 NLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
L + L L+ N+ S P +L L G+ L+ N +
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-30
Identities = 71/343 (20%), Positives = 126/343 (36%), Gaps = 51/343 (14%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
V L++S + S L L+ L+L++N + + + + +L + + N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-IPNLENLL 172
L ++ + LQ N + + L L LDL N LT + IP++ ++
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRLNLYDNYLTSSTP 231
L GN +++ L +N +L I + +L+ L L N +S +
Sbjct: 388 LSGNKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291
+ + S +L ++L N L +
Sbjct: 444 DQTP-----------------------------------SENPSLEQLFLGENMLQLAWE 468
Query: 292 ITLCK-----LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT 346
LC L LQ+L N L P F L +L L L+ N+L+ +
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPA 526
Query: 347 SLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE 389
+L IL + N+L++ P +L L+++ N FI L
Sbjct: 527 NLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELS 566
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-38
Identities = 71/369 (19%), Positives = 127/369 (34%), Gaps = 57/369 (15%)
Query: 51 SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNN 109
S + + + +P + + + LDL N ++ F + L + N
Sbjct: 10 SAQDRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65
Query: 110 NTLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ--- 164
N + + NL L TL L++N L I +F LS+L+ LD+S N + +
Sbjct: 66 NIV-SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123
Query: 165 ---IPNLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLN 220
+ NL++L + N+ I H F+ + L L L+K + + +L L L
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 221 LYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIY 280
L + + I L L +
Sbjct: 183 LRHLNINA---------------------------------IRDYSF---KRLYRLKVLE 206
Query: 281 LAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGNKLSGSIP 339
++ ++ L LS L +PY L L L+LS N +S
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-GNLKVLVG 398
+ L+ + L +L + P L + LN+S N ++ L + ++ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLET 324
Query: 399 IDLSMNNFS 407
+ L N +
Sbjct: 325 LILDSNPLA 333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 4e-37
Identities = 62/356 (17%), Positives = 118/356 (33%), Gaps = 51/356 (14%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
R ++ SL + S + +++ LDLS N S + + + L + ++N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
E +L +L+ L TL L NN++ + S+ L ++NN++ V +
Sbjct: 71 -YETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQG-- 121
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
+ L N L G ++ L+L N + +
Sbjct: 122 -------------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
SS +LE ++ I ++ L + L+ NKL +
Sbjct: 163 ELA-----------ASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGP 208
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTSLRIL 351
+ +S +NKL I +L DL GN G++ F ++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
+ + K ++ + L + LP I L ++
Sbjct: 268 AKQTVKKLTGQNEEECTV---PTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 28/312 (8%)
Query: 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150
+I N + +++L + + ++ L L N L+ + + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 151 SDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206
L+LS N L + + L L L N + + L N+ +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115
Query: 207 PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266
+ K + L +N +T +L S +YL+ ++ +
Sbjct: 116 CSRG---QGKKNIYLANNKIT-MLRDLDE-GCRSRVQYLDLKLNEIDTVN---------F 161
Query: 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
E ++ L + L N + + KL+ L NKL + EF A +
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW-NLKDILYLNLSSNFFISP 385
+ L NKL I +L L N + + + + + ++
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 386 LPLEIGNLKVLV 397
E + L
Sbjct: 278 QNEEECTVPTLG 289
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-27
Identities = 39/235 (16%), Positives = 89/235 (37%), Gaps = 16/235 (6%)
Query: 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
AI N ++ I ++ +S + + + N+K L+L N L+ + L +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD--LAPFT 58
Query: 241 NCKYLEQSSQSLEVFSMFN-------CNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
+ L SS L +++ ++E+ ++ ++ A N ++ + +
Sbjct: 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCS 117
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLRILS 352
Q + + +NK+ + + + LDL N++ + + +L L+
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
L N + + + L+LSSN ++ + E + + I L N
Sbjct: 176 LQYNFIYDV--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL 396
+I N +I + + L + S + ++ L+LS N ++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 397 VGIDLSMNNFSGFGSI 412
++LS N +
Sbjct: 61 ELLNLSSNVLYETLDL 76
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-36
Identities = 66/384 (17%), Positives = 126/384 (32%), Gaps = 34/384 (8%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF-SGSIPSSIFNMSSLLSIYFNNNTLF 113
L +L S +G+L +L+ L+++ N S +P N+++L + ++N +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 114 GEIPEELGNLAELE----TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN----------- 158
+L L ++ +L L N + I F L L L +N
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 159 -NLTDVQIPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNS---FFDLIPNTFGNL 213
L +++ L L+I E + + D I + F L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC------NISGGIL 267
N+ +L + + S+ + + + + + + + GG
Sbjct: 282 TNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 268 EEISNLTNLTAIYLAGNKLN--GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY 325
+L +L + L+ N L+ G + L+ L N + + F L L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399
Query: 326 ELDLSGNKLSGSIPTC-FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384
LD + L F + +L L + L + L ++ N F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 385 PLPLEI-GNLKVLVGIDLSMNNFS 407
+I L+ L +DLS
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLE 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 6e-36
Identities = 75/391 (19%), Positives = 129/391 (32%), Gaps = 44/391 (11%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L++S L + LQ LDLS + ++S L ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP------- 166
L+ L+ L L + I +L +L +L+++HN + ++P
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSI----LELQKNSFFDLIPNTFGNLINLKRLNLY 222
NLE+L L N + ++ + L+L N + P F + L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
+N+ + + + LE L F N+ + L NLT
Sbjct: 209 NNFDSLNVMKTCI----QGLAGLEVHRLVLGEFRNEG-NLEKFDKSALEGLCNLTIEEFR 263
Query: 283 GNKLNGS---IPITLCKLQKLQLLSFVDNKLEGPIPYEFCR------------------- 320
L+ I L + S V +E + +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL--ISIIPSTLWNLKDILYLNLS 378
L SL L + NK + + SL L L N L + + + YL+LS
Sbjct: 324 LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
N I+ + L+ L +D +N
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-31
Identities = 65/342 (19%), Positives = 125/342 (36%), Gaps = 28/342 (8%)
Query: 53 RVTTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSG-----SIPSSIFNMSSLLSIY 106
R+ L + + + + L+ L+ L F S L+I
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 107 FN----NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLT 161
+ +I + L + + L + + S L ++
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 162 DVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN--SFFDLIPNTFGNLINLKRL 219
+++ +L+ L +N G + + L L+L +N SF + +LK L
Sbjct: 321 TLKLKSLKRLTF-TSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279
+L N + + + L L ++L+ +L+ S F+ +L NL +
Sbjct: 379 DLSFNGVITMSSNFLGLEQL---EHLDFQHSNLKQMSEFSV---------FLSLRNLIYL 426
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKL-EGPIPYEFCRLASLYELDLSGNKLSGSI 338
++ + L L++L N E +P F L +L LDLS +L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
PT F + +SL++L++ SN+L S+ L + + L +N
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 80/396 (20%), Positives = 122/396 (30%), Gaps = 54/396 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T L+ IP L S + LDLSFN S F+ L + + +
Sbjct: 10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNL 168
+L+ L TL L N + + LSSL L NL ++ + L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 169 ENLLLWGNNF-SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL-------------- 213
+ L + N S +P + N + L L+L N + L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 214 -------------INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260
I L +L L +N+ + + + LE L F
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI----QGLAGLEVHRLVLGEFRNEG- 241
Query: 261 NISGGILEEISNLTNLTAIYLAGNKLNGS---IPITLCKLQKLQLLSFVDNKLEGPIPYE 317
N+ + L NLT L+ I L + S V +E +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL 377
+ L+L K SL+ L+ SNK + +L + +L+L
Sbjct: 302 YNF--GWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDL 354
Query: 378 SSNF--FISPLPLEIGNLKVLVGIDLSMNNFSGFGS 411
S N F L +DLS N S
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 63/301 (20%), Positives = 105/301 (34%), Gaps = 31/301 (10%)
Query: 50 RSYRVTTLNISGLSLTST-IPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFN 108
+ + ++ L I L+++ + L S L +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 109 NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI--- 165
F + L L+ L +N S +L SL LDLS N L+
Sbjct: 315 KFGQFPTL-----KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 166 -----PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRL 219
+L+ L L N + +L L+ Q ++ + + F +L NL L
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-SNLTNLTA 278
++ + + + LS+ LEV M + L +I + L NLT
Sbjct: 427 DISHTHTRVAFNGI--FNGLSS----------LEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI 338
+ L+ +L P L LQ+L+ N+L+ F RL SL ++ L N S
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 339 P 339
P
Sbjct: 535 P 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 2e-21
Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 55 TTLNISG--LSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
L++S LS +SL+ LDLSFN ++ S+ + L + F ++ L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408
Query: 113 FGEIPEE--LGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------- 163
++ E +L L L + + + LSSL L ++ N+ +
Sbjct: 409 -KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 164 QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
++ NL L L P + S L +L + N + F L +L+++ L+
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 224 NYLTSSTPELSFL 236
N S P + +L
Sbjct: 528 NPWDCSCPRIDYL 540
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 9e-36
Identities = 70/354 (19%), Positives = 132/354 (37%), Gaps = 24/354 (6%)
Query: 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAE 125
I S L + + +++ + F N+T+ L + +
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76
Query: 126 LETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNF 178
+E L L + + I + F ++ L + N + + +P L L+L N+
Sbjct: 77 VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 179 SGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST----PEL 233
S ++P IF N KL+ L + N+ + +TF +L+ L L N LT P L
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
N ++E + +I+ ++ LT + L N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRG-PVNVELTILKLQHNNLT-DTA-W 249
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353
L L + N+LE + + F ++ L L +S N+L ++ +L++L L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308
Query: 354 DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
N L+ + + L L N ++ L++ L + LS N++
Sbjct: 309 SHNHLLHV-ERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 6e-31
Identities = 77/334 (23%), Positives = 121/334 (36%), Gaps = 60/334 (17%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNT 111
+V LN++ L + ++Q L + FN +P +F N+ L + N
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134
Query: 112 LFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI---P 166
L +P + N +L TL + NN L I F +SL +L LS N LT V + P
Sbjct: 135 L-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
+L + + N S + + L+ NS + + L L L N L
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL 244
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
T + N L + L+ N+L
Sbjct: 245 TD--------------------------------------TAWLLNYPGLVEVDLSYNEL 266
Query: 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT 346
+ K+Q+L+ L +N+L + + +L LDLS N L +
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324
Query: 347 SLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L L LD N ++++ ST LK L LS N
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLK---NLTLSHN 355
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 54/316 (17%), Positives = 106/316 (33%), Gaps = 38/316 (12%)
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI------P 166
+ I L + + L++ + ++ + +
Sbjct: 16 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75
Query: 167 NLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
+E L L I + F A + L + N+ L P+ F N+ L L L N
Sbjct: 76 QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134
Query: 226 LTSSTPELSFLYSLSNCKYLE--------------QSSQSLEVFSMFNCNISGGILEEIS 271
L+S + ++ L Q++ SL+ + + ++ ++S
Sbjct: 135 LSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 189
Query: 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331
+ +L ++ N L+ TL ++ L N + + L L L
Sbjct: 190 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPVNV--ELTILKLQH 241
Query: 332 NKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG 391
N L+ N L + L N+L I+ ++ + L +S+N + L L
Sbjct: 242 NNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQ 298
Query: 392 NLKVLVGIDLSMNNFS 407
+ L +DLS N+
Sbjct: 299 PIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 3e-17
Identities = 48/256 (18%), Positives = 95/256 (37%), Gaps = 13/256 (5%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
T L + +LT + L N L +DLS+N I F M L +Y +NN L
Sbjct: 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL- 290
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI---PNLEN 170
+ + L+ L L +N L + + L +L L HN++ +++ L+N
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN 349
Query: 171 LLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
L L N++ +F N ++ ++ + ++ D L + Y + L
Sbjct: 350 LTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY--QLEHGLCCKESDKPYLDRLLQY 407
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTA-IYLAGNKLNG 288
S + + + ++ ++ + I+ + L A + ++
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467
Query: 289 SIPITLCKLQKLQLLS 304
+ + Q LQ L
Sbjct: 468 LTNEQIQQEQLLQGLH 483
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 10/191 (5%)
Query: 219 LNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTA 278
YD ++ T ++ F + + ++ + N + + + +
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLN-------NQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 279 IYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI 338
+ L ++ +Q L N + P+ F + L L L N LS
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 339 PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398
F N L LS+ +N L I T + L LSSN +++ + L
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFH 196
Query: 399 IDLSMNNFSGF 409
++S N S
Sbjct: 197 ANVSYNLLSTL 207
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-35
Identities = 58/356 (16%), Positives = 116/356 (32%), Gaps = 44/356 (12%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
R ++ SL + S + +++ LDLS N S + + + L + ++N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
+ +L +L+ L TL L NN++ + S+ L ++NN++ V +
Sbjct: 71 YE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQG-- 121
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
+ L N L G ++ L+L N + +
Sbjct: 122 -------------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
SS +LE ++ I ++ L + L+ NKL +
Sbjct: 163 ELA-----------ASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGP 208
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352
+ +S +NKL I +L DL GN F ++ + R+ +
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQT 266
Query: 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
+ + + + + L L + ++ + G
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 51/349 (14%), Positives = 103/349 (29%), Gaps = 30/349 (8%)
Query: 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150
+I N + +++L + + ++ L L N L+ + + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 151 SDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206
L+LS N L + + L L L N + + L N+ +
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVS 115
Query: 207 PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266
+ K + L +N +T S +YL+ ++ +
Sbjct: 116 CSRG---QGKKNIYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVN---------F 161
Query: 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
E ++ L + L N + + + KL+ L NKL + EF A +
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI-IPSTLWNLKDILYLNLSSNFFISP 385
+ L NKL I +L L N + + + + + ++
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 386 LPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434
E V + + R+ + + Q
Sbjct: 278 QNEE--ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-27
Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 25/356 (7%)
Query: 70 SELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
EL S++TL + N S + S +IY NN + + G + ++ L
Sbjct: 93 QELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 130 WLQNNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPH 184
L+ N + + +L L+L +N + DV L+ L L N + +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGP 208
Query: 185 FIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKY 244
+A+ ++ + L+ N I NL+ +L N T F +
Sbjct: 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 245 LEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG---------------NKLNGS 289
+Q+ + L + C + +L A +
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLR 349
+ + + + + + I R + L+ L + L
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Query: 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405
+ I + +T L + + + + + D+ +
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 3e-35
Identities = 74/348 (21%), Positives = 118/348 (33%), Gaps = 47/348 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
LN+ LT+ +P L + TL + N + S+P+ + +L + N L
Sbjct: 43 AVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQL-T 94
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--QIPNLENLL 172
+P L EL L S L L + N LT + P L+ L
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVLPPGLQELS 147
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS---S 229
+ N + ++P KL Q S L L+ L++ DN L S
Sbjct: 148 VSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSG-------LQELSVSDNQLASLPTL 199
Query: 230 TPELSFLYSLSN-CKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288
EL L++ +N L L+ + ++ + S L L ++GN+L
Sbjct: 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELKEL---MVSGNRLT- 254
Query: 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348
S+P+ L L + N+L +P L+S ++L GN LS +
Sbjct: 255 SLPMLPSGLLSLSVY---RNQLTR-LPESLIHLSSETTVNLEGNPLS-ERTLQ--ALREI 307
Query: 349 RILSLDSNKLISI------IPSTLWNLKDILYLNLSSNFFISPLPLEI 390
S +I P L L P P +
Sbjct: 308 TSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 8e-33
Identities = 68/333 (20%), Positives = 121/333 (36%), Gaps = 74/333 (22%)
Query: 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134
+ L++ + + ++P + + ++ +N L +P L TL + N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-TSLPALPPEL---RTLEVSGN 91
Query: 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194
LT ++ L LS +L + L L ++GN + ++P L
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPAL-PSGLCKLWIFGNQLT-SLPVLPPG---LQE 145
Query: 195 LELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254
L + N +P L +L Y+N LTS
Sbjct: 146 LSVSDNQL-ASLPALPSEL---CKLWAYNNQLTS-------------------------- 175
Query: 255 FSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPI 314
+ S L L ++ N+L S+P +L KL +N+L +
Sbjct: 176 -----------LPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SL 216
Query: 315 PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILY 374
P + L EL +SGN+L+ S+P L+ L + N+L S+ P L
Sbjct: 217 PAL---PSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLTSL-PMLPSGLL---S 265
Query: 375 LNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
L++ N ++ LP + +L ++L N S
Sbjct: 266 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-18
Identities = 62/280 (22%), Positives = 98/280 (35%), Gaps = 50/280 (17%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L I G LTS +P L Q L +S N + S+P+ + L + NN L
Sbjct: 124 CKLWIFGNQLTS-LPVLPPGL---QELSVSDNQLA-SLPALPSELCKL---WAYNNQL-T 174
Query: 115 EIPEELGNL-----------------AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157
+P L +EL LW NN LT ++ + S L +L +S
Sbjct: 175 SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALP---SGLKELIVSG 230
Query: 158 NNLTDV--QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLIN 215
N LT + L+ L++ GN + ++P S L L + +N L P + +L +
Sbjct: 231 NRLTSLPVLPSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRL-PESLIHLSS 285
Query: 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTN 275
+NL N L+ T + + S + F M E L
Sbjct: 286 ETTVNLEGNPLSERTLQALREITS-----APGYSGPIIRFDMAGA----SAPRETRALHL 336
Query: 276 LTAIYLAGNKLNGSIPIT----LCKLQKLQLLSFVDNKLE 311
A +L + P + S ++L
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 20/175 (11%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L +SG LTS +P L + L +S N + S+P S LLS+ N L
Sbjct: 224 KELIVSGNRLTS-LPVLPSEL---KELMVSGNRLT-SLPMLP---SGLLSLSVYRNQL-T 274
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
+PE L +L+ T+ L+ N L+ ++ ++S + +
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITS---APGYSGPIIRFDMAGASAPRET 331
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
A L + + D + FG N +L+ + L+ +
Sbjct: 332 RALHLA-------AADWLVPAREGEPAPAD-RWHMFGQEDNADAFSLFLDRLSET 378
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 319 CRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLS 378
C L++ + L+ ++P C + L + N L S +P+ L+ L +S
Sbjct: 37 CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELR---TLEVS 89
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
N ++ LP+ L L + +
Sbjct: 90 GN-QLTSLPVLPPGLLELSIFSNPLTHLP 117
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-34
Identities = 73/384 (19%), Positives = 149/384 (38%), Gaps = 32/384 (8%)
Query: 45 VSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLS 104
+SCD + S TS IPS L +++++LDLSFN + + ++L
Sbjct: 2 LSCD----ASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQV 54
Query: 105 IYFNNNTLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTD 162
+ ++ + I + +L LE L L +N L+ ++ SS F LSSL L+L N
Sbjct: 55 LILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT 112
Query: 163 VQI-------PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLI 214
+ + NL+ L + I F + L+ LE++ S + + ++
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172
Query: 215 NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF--SMFNCNISGGILEEISN 272
++ L L+ + F LS+ +YLE +L F S + +++++
Sbjct: 173 DIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 273 LTN------LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
+ + + + L F ++ + ++
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS-- 384
L + L + T + ++ ++++++K+ + S +LK + +L+LS N +
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 385 -PLPLEIGNLKVLVGIDLSMNNFS 407
G L + LS N+
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 6e-29
Identities = 53/359 (14%), Positives = 111/359 (30%), Gaps = 26/359 (7%)
Query: 55 TTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
TL I + S I L+SL L++ S+ ++ + + + +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
+ L+ + L L++ L S + S + + + + LL
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
+ + + + + + + ++RL++ YL +
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
L ++ ++ N + +L +L + L+ N +
Sbjct: 306 YSLLE------------KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
Query: 294 ---LCKLQKLQLLSFVDNKLE--GPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348
LQ L N L L +L LD+S N +P +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412
Query: 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
R L+L S + + L+ L++S+N + L + L+ L +S N
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLE---VLDVSNN-NLDSFSLFLPRLQEL---YISRNKLK 464
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 59/353 (16%), Positives = 115/353 (32%), Gaps = 47/353 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFN---WFSGSIPSSIFNMSSLLSIYFNNNT 111
L + + LSS++ L+L F S S + + F +
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 112 L----FGEIPEELGNLAELETLWLQNNFLTGTIH------SSIFNLSSLSDLDLSHNNLT 161
L F E+ + L + EL + + L G + L + + + ++
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 162 DVQI-----------PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT- 209
+ ++ + + + F + L L+L +N +
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 210 --FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL 267
G +L+ L L N+L S L +L N L+ S +
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP----------- 403
Query: 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYEL 327
+ + + L+ + + C Q L++L +N L+ L L EL
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDS-FSL---FLPRLQEL 456
Query: 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
+S NKL ++P L ++ + N+L S+ L + + L +N
Sbjct: 457 YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 49/301 (16%), Positives = 99/301 (32%), Gaps = 45/301 (14%)
Query: 64 LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNL 123
+ E + + D + + ++ ++ LF ++ L
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309
Query: 124 AELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAI 182
+++ + ++N+ + + S +L SL LDLS N + + + N
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN--------------- 353
Query: 183 PHFIFNASKLSILELQKNSFFDL--IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
L L L +N + L NL L++ N + +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM- 412
Query: 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISN--LTNLTAIYLAGNKLNGSIPITLCKLQ 298
++L N+S + + L + ++ N L+ S + L +LQ
Sbjct: 413 --RFL---------------NLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQ 454
Query: 299 KLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358
+L + NKL+ L + +S N+L F TSL+ + L +N
Sbjct: 455 ELYIS---RNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 359 I 359
Sbjct: 510 D 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 13/191 (6%)
Query: 53 RVTTLNISGLSLTSTI---PSELGNLSSLQTLDLSFNWFS--GSIPSSIFNMSSLLSIYF 107
+ L++S + + G SLQTL LS N + + +L S+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--QI 165
+ NT +P+ ++ L L + + + + I +L LD+S+NNL +
Sbjct: 395 SRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFSLFL 450
Query: 166 PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
P L+ L + N +P L ++++ +N + F L +L+++ L+ N
Sbjct: 451 PRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 226 LTSSTPELSFL 236
S P + +L
Sbjct: 509 WDCSCPRIDYL 519
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-18
Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 71/292 (24%)
Query: 49 VRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYF 107
V + + L+I L + + L ++ + + + +P S ++ SL +
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341
Query: 108 NNN---TLFGEIPEELGNLAELETLWLQNNFLT--GTIHSSIFNLSSLSDLDLSHNNLTD 162
+ N + + G L+TL L N L + L +L+ LD+S N
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401
Query: 163 VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
+P++ ++ LNL
Sbjct: 402 -------------------------------------------MPDSCQWPEKMRFLNLS 418
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
+ + + L+ S+ +L+ FS L L +Y++
Sbjct: 419 STGIRVVKTCI-----PQTLEVLDVSNNNLDSFS--------------LFLPRLQELYIS 459
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334
NKL ++P L ++ N+L+ F RL SL ++ L N
Sbjct: 460 RNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-14
Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 9/287 (3%)
Query: 256 SMFNCNISGGILEEI--SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313
+ C+ I + ++ L+ NK+ L LQ+L +++
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI-IPSTLWNLKDI 372
F L SL LDLS N LS + FG +SL+ L+L N ++ + S NL ++
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 373 LYLNLSSNFFISPLPLE-IGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQ 431
L + + S + L L +++ + + S I+D + L
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-----IHHLTLH 180
Query: 432 YERAFKSFDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHF 491
+ ++ D++ + + +L + +S + ++ + + L F
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN 538
++ L+LS V + + L DF ++ + + +
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 66/280 (23%), Positives = 105/280 (37%), Gaps = 86/280 (30%)
Query: 404 NNFS--------GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------- 448
NNF FG +YK ++DG KVA+K + + + F+ + +
Sbjct: 39 NNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLV 98
Query: 449 -------------LVLEYMPHGSLEKCLYSSN---YILDIFQRLNIMIDVALALEYLHFG 492
L+ +YM +G+L++ LY S+ + QRL I I A L YLH
Sbjct: 99 SLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR 158
Query: 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHH---RIYGT-- 547
IIH D+K N+LL N V ++DFG++K + DQ+ H + GT
Sbjct: 159 ---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQT---------HLSTVVKGTLG 206
Query: 548 -------------------------------RRNPQMNFFSGEMTLKSWVNDLLPIS-VM 575
R + + L W + +
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
++VD NL DK + + L + A++C A S + R
Sbjct: 267 QIVDPNL---ADKI---RPESLRKFGDTAVKCLALSSEDR 300
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-33
Identities = 77/380 (20%), Positives = 132/380 (34%), Gaps = 31/380 (8%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
V +++S S+ + L LQ L + I ++ F +SSL+ + + N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGT-IHSSIF-NLSSLSDLDLSHNNLTDVQ----- 164
++ LA LE L L L G + + F L+SL L L NN+ +Q
Sbjct: 92 -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 165 --IPNLENLLLWGNNFSGAIPHFIF---NASKLSILELQKNSFFDLIPN--------TFG 211
+ L L N +I ++L L + D+
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
++ L+L N S + F S S + S F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 272 N---LTNLTAIYLAGNKLNGSIPITLCK-LQKLQLLSFVDNKLEGPIPYEFCRLASLYEL 327
+ + L+ +K+ ++ ++ L+ L+ N++ F L L +L
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 328 DLSGNKLSGSIPTC-FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL 386
+LS N L SI + F N L +L L N + ++ + L ++ L L +N S
Sbjct: 329 NLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 387 PLEIGNLKVLVGIDLSMNNF 406
L L I L N +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 77/380 (20%), Positives = 132/380 (34%), Gaps = 51/380 (13%)
Query: 51 SYRVTTLNISGLSLTS--TIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYF 107
S L +P+ + +DLS N + + + F + L +
Sbjct: 9 SVIGYNAICINRGLHQVPELPA------HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKV 61
Query: 108 NNNTLFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI 165
T I L+ L L L N + + F L++L L L+ NL
Sbjct: 62 EQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLD---- 116
Query: 166 PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNT-FGNLINLKRLNLYD 223
+ F + L +L L+ N+ + P + F N+ L+L
Sbjct: 117 -------------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N + S E L + + S+ + M + T++T + L+G
Sbjct: 164 NKVKSICEED--LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 284 NKLNGSIPITLCKLQKLQLL-------------SFVDNKLEGPIPYEFCRL--ASLYELD 328
N S+ + SF + P + F L + + D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 329 LSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPL 388
LS +K+ + + F + T L L+L N++ I + W L +L LNLS N F+ +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS 340
Query: 389 EI-GNLKVLVGIDLSMNNFS 407
+ NL L +DLS N+
Sbjct: 341 RMFENLDKLEVLDLSYNHIR 360
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 27/211 (12%)
Query: 50 RSYRVTTLNISGLSLTSTIPS---ELGNLSSLQTLDLSFNWFSG---------SIPSSIF 97
++ +TTL++SG ++ + + +Q+L LS ++ G + F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 98 N---MSSLLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSD 152
S + + + + +F + + + + +LE L L N + I + F L+ L
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327
Query: 153 LDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDL 205
L+LS N L + + LE L L N+ A+ F L L L N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
F L +L+++ L+ N S P + +L
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 9e-33
Identities = 74/360 (20%), Positives = 132/360 (36%), Gaps = 50/360 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS---------------SIFNM 99
+L S SLT +P +L SL + + S P + N
Sbjct: 94 ESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159
S L I +NN+L ++P+ +L E + NN L + NL L+ + +N+
Sbjct: 153 SFLKIIDVDNNSL-KKLPDLPPSL---EFIAAGNNQLE--ELPELQNLPFLTAIYADNNS 206
Query: 160 LTDV--QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLK 217
L + +LE+++ N + N L+ + N L P+ +L L
Sbjct: 207 LKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALN 263
Query: 218 RLNLYDNYLTSSTPELSFLYSLSNC-KYLEQSSQSLEVFSMFNCNISGGILEEISNLTNL 276
+ Y L L+FL N L + +L + + I +L
Sbjct: 264 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSL 319
Query: 277 TAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
+ ++ NKL +P +L++L N L +P +L +L + N L
Sbjct: 320 EELNVSNNKLI-ELPALPPRLERLIAS---FNHLAE-VPEL---PQNLKQLHVEYNPLR- 370
Query: 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL 396
P + LR+ ++ L + P NLK L++ +N + P +++ L
Sbjct: 371 EFPDIPESVEDLRM----NSHLAEV-PELPQNLK---QLHVETNP-LREFPDIPESVEDL 421
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 5e-32
Identities = 89/375 (23%), Positives = 130/375 (34%), Gaps = 59/375 (15%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T + P G + L + NN L
Sbjct: 37 TEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAHELELNNLGL-S 84
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
+PE + LE+L N LT + +L SL + + L+D+ P LE L +
Sbjct: 85 SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL-PPLLEYLGVS 139
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234
N +P + N+S L I+++ NS L +L+ + +N L PEL
Sbjct: 140 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLE-ELPELQ 192
Query: 235 FLYSL-----SNCK--YLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287
L L N L SLE N + L E+ NL LT IY N L
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250
Query: 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP-----TCF 342
++P L+ L + DN L +P L L + + LS P
Sbjct: 251 -TLPDLPPSLEALNVR---DNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 343 GNQ--------TSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLK 394
N+ SL L++ +NKLI +P+ L+ L S N +P NLK
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLAE-VPELPQNLK 360
Query: 395 VLVGIDLSMNNFSGF 409
L + N F
Sbjct: 361 QL---HVEYNPLREF 372
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-31
Identities = 77/348 (22%), Positives = 123/348 (35%), Gaps = 51/348 (14%)
Query: 69 PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELET 128
P + N LQ + + +P N+ S Y + P G E+
Sbjct: 5 PRNVSNTF-LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 129 LWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--QIPNLENLLLWGNNFSGAIPHFI 186
L++ +L+L++ L+ + P+LE+L+ N+ + +P
Sbjct: 63 SRLRDCLDR-----------QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELP 110
Query: 187 FNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSL-----SN 241
+ L + + DL P L+ L + +N L PEL L N
Sbjct: 111 QSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL-PELQNSSFLKIIDVDN 162
Query: 242 CK--YLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQK 299
L SLE + N + L E+ NL LTAIY N L +P L+
Sbjct: 163 NSLKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLES 219
Query: 300 LQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359
+ +N LE E L L + N L ++P + L L++ N L
Sbjct: 220 IVAG---NNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT 270
Query: 360 SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
+P +L +L++S N S L NL L + S N
Sbjct: 271 D-LPELPQSLT---FLDVSEN-IFSGLSELPPNLYYL---NASSNEIR 310
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 67/347 (19%), Positives = 114/347 (32%), Gaps = 51/347 (14%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L +S L +P EL N S L+ +D+ N +P SL I NN L
Sbjct: 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQL-- 185
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLEN 170
E EL NL L ++ NN L SL + +N L ++ +P L
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILEELPELQNLPFLTT 241
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
+ N +P + L++ + +P +L L + L+
Sbjct: 242 IYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELP 296
Query: 231 PELSFLYSLSNC-KYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS 289
P L +L + SN + L SLE ++ N + + L L + N L
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-E 351
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY----------------ELDLSGNK 333
+P L++L + N L P + L +L + N
Sbjct: 352 VPELPQNLKQLHVE---YNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407
Query: 334 LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L P + + L ++S +++ + +
Sbjct: 408 LR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 8e-25
Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 32/298 (10%)
Query: 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWG 175
I + L+ ++ LT + N+ S ++ + + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR--- 58
Query: 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
+ + + LEL L P +L+ L N LT
Sbjct: 59 EMAVSRLRDCLDR--QAHELELNNLGLSSL-PELPP---HLESLVASCNSLTELPELPQS 112
Query: 236 LYSLS----NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291
L SL N K L LE + N + L E+ N + L I + N L +P
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLP 169
Query: 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRIL 351
L+ + +N+LE +P E L L + N L +P + L +
Sbjct: 170 DLPPSLEFIAAG---NNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDLPLS---LESI 220
Query: 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
+N L +P L NL + + +N + LP +L+ L ++ N +
Sbjct: 221 VAGNNIL-EELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEAL---NVRDNYLTDL 272
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-23
Identities = 60/300 (20%), Positives = 98/300 (32%), Gaps = 41/300 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+ L EL NL L + N +P ++ S+ NN L
Sbjct: 176 EFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL-- 227
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
E EL NL L T++ NN L T+ +L +L+ D +L + +L L +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVS 285
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS---STP 231
N FSG + L L N L +L+ LN+ +N L P
Sbjct: 286 ENIFSG-LSELP---PNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPP 337
Query: 232 ELSFLY-----------SLSNCKYLEQSSQSLEVF-----SMFNCNISGGILEEISNLTN 275
L L N K L L F S+ + ++ + E N
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397
Query: 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS 335
L +++ N L P ++ L++ ++ P + L + +
Sbjct: 398 LKQLHVETNPLR-EFPDIPESVEDLRMN---SERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 69/345 (20%), Positives = 118/345 (34%), Gaps = 72/345 (20%)
Query: 40 CHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSG 90
CH V C L++ +T + NL +L TL L N S
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS- 89
Query: 91 SIPSSIF-NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLS 148
I F + L +Y + N L E+PE++ L+ L + N +T + S+F L+
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQL-KELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLN 145
Query: 149 SLSDLDLSHNNLTDVQIP--------NLENLLLWGNNFSGAIPHFIFNASKLSILELQKN 200
+ ++L N L I L + + N + IP + L+ L L N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGN 202
Query: 201 SFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260
+ + L NL +L L N +++
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISA-------------------------------- 230
Query: 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG------PI 314
+ G L +N +L ++L NKL +P L + +Q++ +N +
Sbjct: 231 -VDNGSL---ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 315 PYEFCRLASLYELDLSGNKLSGSI--PTCFGNQTSLRILSLDSNK 357
P + AS + L N + P+ F + L + K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 64/320 (20%), Positives = 111/320 (34%), Gaps = 38/320 (11%)
Query: 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLWLQNNF 135
L+ + S +P + + NN + EI + NL L TL L NN
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNK 87
Query: 136 LTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI---PNLENLLLWGNNFSGAIPHFIF-NAS 190
++ I F L L L LS N L ++ L+ L + N + + +F +
Sbjct: 88 IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLN 145
Query: 191 KLSILELQKNSF--FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
++ ++EL N + F + L + + D +T+ L + L
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLD 200
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308
+ + L L NL + L+ N ++ +L L+ L +N
Sbjct: 201 GNKIT-------KVDAASL---KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 309 KLEGPIPYEFCRLASLYELDLSGNKLSG------SIPTCFGNQTSLRILSLDSNKL--IS 360
KL +P + + L N +S P + S +SL SN +
Sbjct: 251 KLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 361 IIPSTLWNLKDILYLNLSSN 380
I PST + + L +
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-29
Identities = 69/304 (22%), Positives = 106/304 (34%), Gaps = 57/304 (18%)
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------IPN 167
++P++L + L LQNN +T I F NL +L L L +N ++ + +
Sbjct: 45 KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227
LE L L N +P + L L + +N + + F L + + L N L
Sbjct: 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287
SS I G + L+ I +A +
Sbjct: 159 SS-------------------------------GIENGAF---QGMKKLSYIRIADTNIT 184
Query: 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347
+IP L L L NK+ L +L +L LS N +S N
Sbjct: 185 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 348 LRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS------PLPLEIGNLKVLVGIDL 401
LR L L++NKL +P L + K I + L +N + P G+ L
Sbjct: 242 LRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300
Query: 402 SMNN 405
N
Sbjct: 301 FSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 275 NLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334
+L + + L +P L LL +NK+ +F L +L+ L L NK+
Sbjct: 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 335 SGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-GNL 393
S P F L L L N+L + L+ L + N I+ + + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHEN-EITKVRKSVFNGL 144
Query: 394 KVLVGIDLSMNNFS 407
++ ++L N
Sbjct: 145 NQMIVVELGTNPLK 158
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 61/269 (22%), Positives = 102/269 (37%), Gaps = 34/269 (12%)
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLL 173
+P + + L L++N L ++ +F L+ L+ L LS N L+ + +
Sbjct: 21 SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
+ L L+L N + + F L L+ L+ + L E
Sbjct: 78 ----------------TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM-SEF 119
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI-PI 292
S SL N YL+ S GI L++L + +AGN + P
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-------VAFNGIFN---GLSSLEVLKMAGNSFQENFLPD 169
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352
+L+ L L +LE P F L+SL L++S N + SL++L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Query: 353 LDSNKLISIIPSTLWNLKDIL-YLNLSSN 380
N +++ L + L +LNL+ N
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 22/244 (9%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFS-GSIPSSIF-NMSSLLSIYFNNNT 111
T L + L S L+ L L LS N S S +SL + + N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI----- 165
+ + L +LE L Q++ L S+F +L +L LD+SH +
Sbjct: 90 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 166 -PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
+LE L + GN+F IF L+ L+L + L P F +L +L+ LN+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N S L++ + L+ S + L+ ++L + L
Sbjct: 209 NNFFSLDT--FPYKCLNSLQVLDYSLNHIM-------TSKKQELQHF--PSSLAFLNLTQ 257
Query: 284 NKLN 287
N
Sbjct: 258 NDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 65/294 (22%), Positives = 109/294 (37%), Gaps = 55/294 (18%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSL--LSIYFNNNT 111
T + + LTS +P+ + SS L+L N S+P +F ++ L LS+ N +
Sbjct: 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------- 164
G + L+ L L N + T+ S+ L L LD H+NL +
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 165 IPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLI-PNTFGNLINLKRLNLY 222
+ NL L + + + IF S L +L++ NSF + P+ F L NL L+L
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
L +S ++L++L + ++
Sbjct: 184 QCQLEQ---------------------------------LSPTAF---NSLSSLQVLNMS 207
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL-ASLYELDLSGNKLS 335
N L LQ+L + N + E +SL L+L+ N +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 5/141 (3%)
Query: 271 SNLTNLTAIYLAGNKLN--GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELD 328
LT LT + L+ N L+ G + L+ L N + + F L L LD
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107
Query: 329 LSGNKLSGSIPTC-FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387
+ L F + +L L + L + L ++ N F
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 388 LEI-GNLKVLVGIDLSMNNFS 407
+I L+ L +DLS
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE 188
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 68/344 (19%), Positives = 109/344 (31%), Gaps = 71/344 (20%)
Query: 40 CHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSG 90
CH V C S T L++ ++ + L L L L N S
Sbjct: 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS- 91
Query: 91 SIPSSIF-NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLS 148
I F + L +Y + N L EIP L + L L + +N + + +F L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHL-VEIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLR 147
Query: 149 SLSDLDLSHNNLTDVQIP-------NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201
+++ +++ N L + L L + + IP + L+ L L N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK 204
Query: 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCN 261
+ L RL L N +
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRM--------------------------------- 231
Query: 262 ISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFC-- 319
I G L S L L ++L NKL+ +P L L+ LQ++ N + +FC
Sbjct: 232 IENGSL---SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 320 ----RLASLYELDLSGNKLSGSI--PTCFGNQTSLRILSLDSNK 357
+ A + L N + P F T + + K
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 66/305 (21%), Positives = 108/305 (35%), Gaps = 60/305 (19%)
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------IPN 167
+P+E+ + L LQNN ++ + F L L L L +N ++ + +
Sbjct: 47 AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227
L+ L + N+ IP + S L L + N + F L N+ + + N L
Sbjct: 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287
+S E L L + ++ KL
Sbjct: 161 NSGFEPGAFDGL-----------------------------------KLNYLRISEAKLT 185
Query: 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347
IP L + L L NK++ + R + LY L L N++ +
Sbjct: 186 -GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242
Query: 348 LRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP-------LEIGNLKVLVGID 400
LR L LD+NKL S +P+ L +LK + + L +N I+ + GI
Sbjct: 243 LRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGIS 300
Query: 401 LSMNN 405
L N
Sbjct: 301 LFNNP 305
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 275 NLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334
+L + + L ++P + LL +N + +F L LY L L NK+
Sbjct: 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 335 SGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-GNL 393
S F L+ L + N L+ I P+ +L L + N I +P + L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDN-RIRKVPKGVFSGL 146
Query: 394 KVLVGIDLSMNN 405
+ + I++ N
Sbjct: 147 RNMNCIEMGGNP 158
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 69/308 (22%), Positives = 106/308 (34%), Gaps = 64/308 (20%)
Query: 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLWLQNN 134
+ + + S +P I + + L++ NN I + +L LE L L N
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRN 109
Query: 135 FLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLS 193
+ I F L+SL+ L+L N LT + E L SKL
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL------------------SKLR 150
Query: 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYD-NYLTSSTPELSFLYSLSNCKYLEQSSQSL 252
L L+ N + F + +L RL+L + L
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------------------------ 186
Query: 253 EVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312
IS G L NL + L + +P L L L+ L N
Sbjct: 187 ---------ISEGAF---EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232
Query: 313 PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372
P F L+SL +L + +++S F SL L+L N L S+ L+ +
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Query: 373 LYLNLSSN 380
+ L+L N
Sbjct: 293 VELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 65/311 (20%), Positives = 94/311 (30%), Gaps = 93/311 (29%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
LN+ ++ +L L+ L L N I FN
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN-------------- 120
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------I 165
LA L TL L +N+LT I S F LS L +L L +N + + +
Sbjct: 121 ---------GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170
Query: 166 PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
P+L L L I F L NLK LNL
Sbjct: 171 PSLMRLDLGELKKLEYIS-----------------------EGAFEGLFNLKYLNLGMCN 207
Query: 226 LTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285
+ + ++ L L + ++GN
Sbjct: 208 IKD--------------------------------------MPNLTPLVGLEELEMSGNH 229
Query: 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345
P + L L+ L +++++ F LASL EL+L+ N LS F
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 346 TSLRILSLDSN 356
L L L N
Sbjct: 290 RYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
+N + L N + T L L++L N + F LASL L+L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-G 391
L+ IP+ F + LR L L +N + SI + ++ L+L + +
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 392 NLKVLVGIDLSMNNFS 407
L L ++L M N
Sbjct: 194 GLFNLKYLNLGMCNIK 209
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
LN+ ++ +P+ L L L+ L++S N F I F +SSL ++ N+ +
Sbjct: 199 KYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV- 254
Query: 114 GEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNL 160
I LA L L L +N L+ ++ +F L L +L L HN
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 79/299 (26%), Positives = 118/299 (39%), Gaps = 85/299 (28%)
Query: 388 LEIGNLKVLVGIDLSM--NNFS--------GFGSIYKARIQDGMKVAVKVFDLQ----YE 433
+ +G LK +L + +NFS GFG +YK R+ DG VAVK + E
Sbjct: 12 VHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGE 71
Query: 434 RAFKSFDVA----------------C--DMMKKLVLEYMPHGSLEKCLY---SSNYILDI 472
F++ +V C + LV YM +GS+ CL S LD
Sbjct: 72 LQFQT-EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDW 130
Query: 473 FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
+R I + A L YLH IIH D+K +N+LL A + DFG+AKL+ +D
Sbjct: 131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTH 190
Query: 533 FTQNTNTCHHRIYGT---------------------------------RRNPQMNFFSGE 559
T T + GT +R + + +
Sbjct: 191 VT--T-----AVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND 243
Query: 560 --MTLKSWVNDLLPI-SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
+ L WV LL + +VDV+L + Y K + + + +A+ CT SP +R
Sbjct: 244 DDVMLLDWVKGLLKEKKLEALVDVDL---QGNY---KDEEVEQLIQVALLCTQSSPMER 296
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-28
Identities = 68/289 (23%), Positives = 98/289 (33%), Gaps = 50/289 (17%)
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHN 158
+ + L E+P+ + L L N + I + F +L L L LS N
Sbjct: 43 NQFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98
Query: 159 NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKR 218
++ ++I L + L+ LEL N + F L LK
Sbjct: 99 HIRTIEIGAFNGL------------------ANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 219 LNLYDNYLTS-------STPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
L L +N + S P L L L K L IS G
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLD-LGELKRLS--------------YISEGAF---E 182
Query: 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331
L+NL + LA L IP L L KL L N L P F L L +L +
Sbjct: 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240
Query: 332 NKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
+++ F N SL ++L N L + L + ++L N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 63/306 (20%), Positives = 97/306 (31%), Gaps = 83/306 (27%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
LN+ + + +L L+ L LS N +I FN
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFN-------------- 109
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENL 171
LA L TL L +N LT TI + F LS L +L L +N + + +
Sbjct: 110 ---------GLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 172 LLWGNNFSGAIPHFIFNASKLSILELQK-NSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
L L+L + + F L NL+ LNL L
Sbjct: 160 ------------------PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199
Query: 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI 290
+ ++ L L + L+GN L+
Sbjct: 200 ------------------------------------IPNLTPLIKLDELDLSGNHLSAIR 223
Query: 291 PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350
P + L LQ L + ++++ F L SL E++L+ N L+ F L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Query: 351 LSLDSN 356
+ L N
Sbjct: 284 IHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 8e-14
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
TN + L N++ + L+ L++L N + F LA+L L+L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-G 391
L+ +IP F + L+ L L +N + SI + + L+L +S +
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 392 NLKVLVGIDLSMNNFS 407
L L ++L+M N
Sbjct: 183 GLSNLRYLNLAMCNLR 198
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
LN++ +L IP+ L L L LDLS N S +I F + L ++ + +
Sbjct: 188 RYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI- 243
Query: 114 GEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNL 160
I NL L + L +N LT + +F L L + L HN
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 73/304 (24%), Positives = 121/304 (39%), Gaps = 28/304 (9%)
Query: 43 TGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSS 101
+SCD S SL S IPS L ++++LDLS N + I +S +
Sbjct: 26 ASLSCDRN----GICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVN 77
Query: 102 LLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNN 159
L ++ +N + I E+ +L LE L L N+L+ + SS F LSSL+ L+L N
Sbjct: 78 LQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135
Query: 160 LTDVQ-------IPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFG 211
+ + L+ L + + I F + L LE+ + P +
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
++ N+ L L+ E+ S+ + LE L+ F +S G +
Sbjct: 196 SIQNVSHLILHMKQHIL-LLEIFVD-VTSSVECLELRDTDLDTFHF--SELSTGETNSLI 251
Query: 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLS 330
+ + L + L ++ L L F N+L+ +P F RL SL ++ L
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLH 309
Query: 331 GNKL 334
N
Sbjct: 310 TNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 1e-22
Identities = 54/294 (18%), Positives = 95/294 (32%), Gaps = 43/294 (14%)
Query: 124 AELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAI 182
+++L L NN +T I +S +L L L+ N + I
Sbjct: 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-------------------TI 91
Query: 183 PHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN 241
F++ L L+L N +L + F L +L LNL N + F +
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 242 CKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ 301
+ + I + LT L + + + L P +L +Q +
Sbjct: 152 QILRVGNMDTFT-------KIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201
Query: 302 LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG----SIPTC----FGNQTSLRILSL 353
L + + +S+ L+L L + T + + R + +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 354 DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-GNLKVLVGIDLSMNNF 406
L + L + +L L S N + +P I L L I L N +
Sbjct: 262 TDESLFQV-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 49/257 (19%), Positives = 91/257 (35%), Gaps = 41/257 (15%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNT 111
+ L ++ + + +L SL+ LDLS+N+ S ++ SS F +SSL + N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135
Query: 112 LFGEIPEE--LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ---- 164
+ E +L +L+ L + N I F L+ L +L++ ++L +
Sbjct: 136 Y-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 165 --IPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKN--------SFFDLIPNTFGNL 213
I N+ +L+L + S + LEL+ N+
Sbjct: 195 KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253
Query: 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG---GILEEI 270
+ + + D L L+ + L + GI +
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQI-------------SGLLELEFSRNQLKSVPDGIFD-- 298
Query: 271 SNLTNLTAIYLAGNKLN 287
LT+L I+L N +
Sbjct: 299 -RLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 44/276 (15%), Positives = 88/276 (31%), Gaps = 53/276 (19%)
Query: 147 LSSLSDLDLSHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSF 202
S +L + + +++L L N + I + L L L N
Sbjct: 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI 88
Query: 203 FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262
+ ++F +L +L+ L+L NYL++ +
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLSN---------------------------------L 115
Query: 263 SGGILEEISNLTNLTAIYLAGNKLNGSIP--ITLCKLQKLQLLSFVDNKLEGPIPYE-FC 319
S + L++LT + L GN ++ L KLQ+L + I + F
Sbjct: 116 SSSWFK---PLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 320 RLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSS 379
L L EL++ + L P + ++ L L + I ++ + + L L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 380 NFFISPLPLEI--------GNLKVLVGIDLSMNNFS 407
+ E+ + ++ +
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 3e-16
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 55 TTLNISGLSLTSTIPSEL-GNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
T LN+ G + + L +L+ LQ L + I F ++ L + + + L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI----- 165
+ L ++ + L L + SS+ L+L +L
Sbjct: 187 -QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 166 ---------PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216
N+ + + + + S L LE +N + F L +L
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303
Query: 217 KRLNLYDNYLTSSTPELSFL 236
+++ L+ N S P + +L
Sbjct: 304 QKIWLHTNPWDCSCPRIDYL 323
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 9e-15
Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 42/232 (18%)
Query: 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
+IP + + L+L N + + +NL+ L L N + +
Sbjct: 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT------------ 90
Query: 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI-TLCKLQK 299
I S+L +L + L+ N L ++ L
Sbjct: 91 ---------------------IEEDSF---SSLGSLEHLDLSYNYL-SNLSSSWFKPLSS 125
Query: 300 LQLLSFVDNKLEG-PIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNK 357
L L+ + N + F L L L + I F T L L +D++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 358 LISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
L S P +L +++++ +L L I L + + + ++L + F
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 57/296 (19%), Positives = 103/296 (34%), Gaps = 84/296 (28%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG ++KA++ VAVK+F +Q +++++ + +
Sbjct: 36 RFGCVWKAQLL-NEYVAVKIFPIQDKQSWQ-NEYEVYSLPGMKHENILQFIGAEKRGTSV 93
Query: 449 -----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH------FGYSTP- 496
L+ + GSL L ++ + +I +A L YLH P
Sbjct: 94 DVDLWLITAFHEKGSLSDFL--KANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA 151
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR------- 549
I H D+K NVLL NN+ A ++DFG+A ++ H ++ GTRR
Sbjct: 152 ISHRDIKSKNVLLKNNLTACIADFGLALKFEA-----GKSAGDTHGQV-GTRRYMAPEVL 205
Query: 550 ----NPQMNFF---------------------------SGEMTLKSWVNDLLPISVM-EV 577
N Q + F + + + + M EV
Sbjct: 206 EGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEV 265
Query: 578 VDVNLL--SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631
V + D + K ++ + EC + R++A R+ +++ L
Sbjct: 266 VVHKKKRPVLRDYW--QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 60/302 (19%), Positives = 95/302 (31%), Gaps = 77/302 (25%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFD----------------VACDMMKK--- 448
+G++YK + D VAVKVF + F + + D
Sbjct: 25 RYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG 83
Query: 449 -----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH------FGYSTPI 497
LV+EY P+GSL K Y S + D + V L YLH Y I
Sbjct: 84 RMEYLLVMEYYPNGSLXK--YLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAI 141
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR-------N 550
H DL NVL+ N+ +SDFG++ L + GT R
Sbjct: 142 SHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLE 201
Query: 551 PQMNFFSGEMTLKS----------W-----VNDLLPISVMEVV----------DVNLLSM 585
+N E LK W DL P + M
Sbjct: 202 GAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDM 261
Query: 586 ED------------KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLL 633
+ + + + + +C + + R+ A+ + R+ ++ +
Sbjct: 262 QVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321
Query: 634 KN 635
+N
Sbjct: 322 RN 323
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 60/286 (20%), Positives = 92/286 (32%), Gaps = 93/286 (32%)
Query: 404 NNFS--------------GFGSIYKARIQDGMKVAVKVFDLQYERA----FKSFDVACDM 445
NNF GFG +YK + + VAVK + + FD +
Sbjct: 25 NNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKV 83
Query: 446 MKK--------------------LVLEYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVA 483
M K LV YMP+GSL L + L R I A
Sbjct: 84 MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
+ +LH IH D+K +N+LL A +SDFG+A+ K Q T T+ R
Sbjct: 144 NGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ--TVMTS----R 194
Query: 544 IYGT--------------------------------RRNPQMNFFSGEMTLKSWVNDLL- 570
I GT ++ L ++
Sbjct: 195 IVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPA--VDEHREPQLLLDIKEEIED 252
Query: 571 -PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
++ + +D + D T+ + ++A +C E +R
Sbjct: 253 EEKTIEDYIDKKM---NDADSTSVEAMY----SVASQCLHEKKNKR 291
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 61/289 (21%), Positives = 97/289 (33%), Gaps = 76/289 (26%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFK-----------------SFDVACDMMKK-- 448
+G +++ Q G VAVK+F + E+++ F +A DM +
Sbjct: 20 RYGEVWRGSWQ-GENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGF-IASDMTSRHS 77
Query: 449 -----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-----FGYSTPII 498
L+ Y GSL L LD L I++ +A L +LH I
Sbjct: 78 STQLWLITHYHEMGSLYDYL--QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIA 135
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR-------NP 551
H DLK N+L+ N ++D G+A + QS Q + R+ GT+R +
Sbjct: 136 HRDLKSKNILVKKNGQCCIADLGLAVM---HSQSTNQLDVGNNPRV-GTKRYMAPEVLDE 191
Query: 552 QMNFFSGEMTLKS---------W-----------VNDL-LPISVMEVVDVNLLSMED--- 587
+ + + W V D P + D + M
Sbjct: 192 TIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVC 251
Query: 588 --------KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
L+ + L EC ++P R+ A L KI
Sbjct: 252 VDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 64/363 (17%), Positives = 130/363 (35%), Gaps = 39/363 (10%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+T+L+ S+T + + L+ L L + N + ++ + ++L + ++N L
Sbjct: 43 TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKL 97
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
+ + L +L L N LT + L+ L+ + N LT++ + + L
Sbjct: 98 -TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLT 151
Query: 173 -LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT---- 227
L + + ++L+ L+ N +L L RLN N +T
Sbjct: 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDL 208
Query: 228 SSTPELSFLYSLSNCK--YLEQSS-QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGN 284
+ +L+FL S+ K ++ + L F ++ ++S L+ LT ++
Sbjct: 209 NQNIQLTFLD-CSSNKLTEIDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQT 264
Query: 285 KLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN 344
L I L +L + + + LY LD ++ +
Sbjct: 265 DLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQ 316
Query: 345 QTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404
L L L++ +L + S LK L+ + I +G + L +
Sbjct: 317 NPKLVYLYLNNTELTELDVSHNTKLK---SLSCVNA-HIQDFS-SVGKIPALNNNFEAEG 371
Query: 405 NFS 407
Sbjct: 372 QTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-22
Identities = 57/357 (15%), Positives = 119/357 (33%), Gaps = 48/357 (13%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T L LT+ ++ L+ L L+ N + + S L + NTL
Sbjct: 88 TYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTL-T 140
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI---PNLENL 171
EI + + +L L N + + + L+ LD S N +T++ + L L
Sbjct: 141 EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196
Query: 172 LLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231
NN + + + +L+ L+ N ++ L L + N LT
Sbjct: 197 NCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTE--- 247
Query: 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291
+S L ++ ++++ T L G + +
Sbjct: 248 -----LDVSTLS-------KLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD 292
Query: 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRIL 351
+T +L LL + + + L L L+ +L+ + + T L+ L
Sbjct: 293 VT--HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSL 344
Query: 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
S + + S++ + + + I+ + N + + + + + G
Sbjct: 345 SCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 5e-21
Identities = 56/296 (18%), Positives = 107/296 (36%), Gaps = 31/296 (10%)
Query: 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGA 181
+ + T S L++L+ LD ++++TD+ ++ L L+ NN +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-T 78
Query: 182 IPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT----SSTPELSFLY 237
+ + + L+ L N +L L L LN N LT S P L++L
Sbjct: 79 LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133
Query: 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGI-LEEISNLTNLTAIYLAGNKLNGSIPITLCK 296
+ E + +C+++ I +++ T LT + + NK+ + + +
Sbjct: 134 -CARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQ 189
Query: 297 LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356
+ L L+ N + + + L LD S NKL+ I T L N
Sbjct: 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243
Query: 357 KLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
L + STL L L+ + +++ + L+ +
Sbjct: 244 PLTELDVSTLSKLT---TLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDV 293
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 51/355 (14%), Positives = 107/355 (30%), Gaps = 69/355 (19%)
Query: 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115
+ + + +T L++L +LD + +++ +
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNS-----------SITDM------------- 57
Query: 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI---PNLENLL 172
+ L L L +N +T + ++L+ L N LT++ + L L
Sbjct: 58 --TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN 112
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
N + + L+ L +N+ ++ + L L+ + N +
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD- 165
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
++ L I+ ++S L + N + +
Sbjct: 166 ------VTPQT-------QLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---L 206
Query: 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352
L + +L L NKL + L L D S N L+ + + L L
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLH 260
Query: 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407
L+ I L + ++Y I L++ + L +D +
Sbjct: 261 CIQTDLLEI---DLTHNTQLIYFQAEGCRKIK--ELDVTHNTQLYLLDCQAAGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 53/338 (15%), Positives = 107/338 (31%), Gaps = 56/338 (16%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
TTL+ S +T ++ L L+ N + + + L + ++N L
Sbjct: 173 TTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL-T 225
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI---PNLENL 171
EI + L +L N LT + LS L+ L +L ++ + L
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 172 LLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231
G + + + ++L +L+ Q +L L L L + LT
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTEL-- 333
Query: 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291
+S+ L+ S N +I + + L + A + I
Sbjct: 334 ------DVSHNT-------KLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQT---IT 375
Query: 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRIL 351
+ L L V L LD GN ++ + +
Sbjct: 376 MPKETLTNNSLTIAVSPDL----------------LDQFGNPMNIEPGDGGVYDQATNTI 419
Query: 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE 389
+ ++ + + + ++ + + F +P P++
Sbjct: 420 TWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIK 457
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
FG++++A G VAVK+ Q F +MK+L
Sbjct: 49 SFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP 107
Query: 450 ----VLEYMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V EY+ GSL + L+ S LD +RL++ DVA + YLH + PI+H +LK
Sbjct: 108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVHRNLK 166
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
N+L+ + DFG+++L S T
Sbjct: 167 SPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGT 202
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-26
Identities = 55/291 (18%), Positives = 95/291 (32%), Gaps = 76/291 (26%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
+G ++ + + G KVAVKVF E ++ + +
Sbjct: 49 RYGEVWMGKWR-GEKVAVKVFFTTEEASWF-RETEIYQTVLMRHENILGFIAADIKGTGS 106
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-----FGYSTPII 498
+ +Y +GSL L + LD L + L +LH I
Sbjct: 107 WTQLYLITDYHENGSLYDYL--KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIA 164
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR-------NP 551
H DLK N+L+ N ++D G+A K + + R+ GT+R +
Sbjct: 165 HRDLKSKNILVKKNGTCCIADLGLAV---KFISDTNEVDIPPNTRV-GTKRYMPPEVLDE 220
Query: 552 QMNFFSGEMTLKS---------W-----------VNDL-LPISVMEVVDVNLLSMEDK-- 588
+N + + + W V + LP + D + M +
Sbjct: 221 SLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVC 280
Query: 589 ---------YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630
+ +CL + L EC A +P R+ A L K+ +
Sbjct: 281 IKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 331
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 35/163 (21%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVF-------DLQYERAFKSFDVACDMMKKL---------- 449
GFG ++K R ++D VA+K + + F+ F +M L
Sbjct: 31 GFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG 90
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V+E++P G L L + + +L +M+D+AL +EY+ + PI+H D
Sbjct: 91 LMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPPIVHRD 149
Query: 502 LKLSNVLLGN-----NMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
L+ N+ L + + A ++DFG+++ S +
Sbjct: 150 LRSPNIFLQSLDENAPVCAKVADFGLSQQ---SVHSVSGLLGN 189
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 66/369 (17%), Positives = 129/369 (34%), Gaps = 19/369 (5%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
T LNIS ++ S++ +LS L+ L +S N + S+F L + ++N L
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDV------QI 165
+I L+ L L N F N+S L L LS +L +
Sbjct: 82 -VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 166 PNLENLLLWGNNFSGAIPH---FIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
+ LL+ G + FN L I+ F ++ + + NL+ N+
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT--NLTAIY 280
+ + + + + + +N I L + + +++ +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 281 LAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT 340
L G + L+ L + V + P Y + +++ + + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF--ISPLPLEIGNLKVLVG 398
C + L +N L + +L ++ L L N +S + +K L
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 399 IDLSMNNFS 407
+D+S N+ S
Sbjct: 379 LDISQNSVS 387
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 75/372 (20%), Positives = 135/372 (36%), Gaps = 30/372 (8%)
Query: 55 TTLNISGLSLTS-TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L++S + + I E GN+S L+ L LS S I +++ + T
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
E+ L + T L F T I ++S + +L +N+ V N + L
Sbjct: 153 --EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
+ + + + L+ +E NSF ++ + ++ + L
Sbjct: 211 --SILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFR 266
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILE-----------------EISNLTNL 276
F YS ++ K L +VF I S ++
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326
Query: 277 TAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE--GPIPYEFCRLASLYELDLSGNKL 334
+ + N L ++ L +L+ L N+L+ I ++ SL +LD+S N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 335 SGSIPTC-FGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNL 393
S SL L++ SN L I L I L+L SN I +P ++ L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKL 443
Query: 394 KVLVGIDLSMNN 405
+ L ++++ N
Sbjct: 444 EALQELNVASNQ 455
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 9e-20
Identities = 56/312 (17%), Positives = 111/312 (35%), Gaps = 27/312 (8%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116
L++S ++ + S + + + + + + +L +I N+
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR-- 239
Query: 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLS--SLSDLDLSHNNLTDVQIP-------- 166
+L + + N L G + F+ S SL L + P
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299
Query: 167 -NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNY 225
N+ + S L+ N D + G+L L+ L L N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 226 LTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285
L + + + + L+ S N + S +L ++ ++ N
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQ---------NSVSYDEKKGDCSWTKSLLSLNMSSNI 410
Query: 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTC-FGN 344
L +I L ++++L NK++ IP + +L +L EL+++ N+L S+P F
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466
Query: 345 QTSLRILSLDSN 356
TSL+ + L +N
Sbjct: 467 LTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 8/190 (4%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL- 112
+ N + +S LD S N + ++ + +++ L ++ N L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 113 -FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLT----DVQIP 166
+I E + L+ L + N ++ SL L++S N LT P
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
++ L L N +IP + L L + N + F L +L+++ L+ N
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 227 TSSTPELSFL 236
S P + +L
Sbjct: 481 DCSCPRIDYL 490
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 9e-16
Identities = 56/365 (15%), Positives = 121/365 (33%), Gaps = 44/365 (12%)
Query: 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT 139
+D S N +P + + + N + ++ +L++L L + +N +
Sbjct: 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59
Query: 140 IHSSIF-NLSSLSDLDLSHNNLTDV----------------------------QIPNLEN 170
+ S+F L LDLSHN L + + L+
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230
L L + + I + + +L + ++ L + +L+ + T+
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSI 290
S+ LE S+ + C+ IL ++ L+ + L + +
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDN-KCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 291 PITLCKLQK---LQLLSFVDNKLEGPI-----PYEFCRLASLYELDLSGNKLSGSIPTCF 342
I + +L + S + KL+G + Y L +L + + +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 343 GNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402
+++ I + + + + L+L+ S+N + G+L L + L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 403 MNNFS 407
MN
Sbjct: 357 MNQLK 361
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 71/274 (25%)
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------IPN 167
+P + A + ++L N ++ + ++ F +L+ L L N L + +
Sbjct: 25 AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 168 LENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
LE L L N ++ F +L L L + +L P F L L+ L L DN L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
+ + +L NLT ++L GN++
Sbjct: 142 QA---------------------------------LPDDTF---RDLGNLTHLFLHGNRI 165
Query: 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT 346
+ S+P F L SL L L N+++ P F +
Sbjct: 166 S-SVP-----------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 347 SLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L L L +N L ++ L L+ + YL L+ N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 13/184 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
+ + G ++ + +L L L N + I ++ F ++ L + ++N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL 93
Query: 114 GEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI------ 165
+ L L TL L L + +F L++L L L N L +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 166 PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
NL +L L GN S ++P F L L L +N + P+ F +L L L L+ N
Sbjct: 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 225 YLTS 228
L++
Sbjct: 212 NLSA 215
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 25/174 (14%)
Query: 55 TTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
L++S + ++ L L TL L + +F +++L +Y +N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLEN 170
+P++ +L L L+L N ++ ++ F L SL L L N + V +
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
L +L L L N+ L L L+ L L DN
Sbjct: 200 L------------------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 55 TTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
L + +L + +P + +L +L L L N S S+P F + SL + + N +
Sbjct: 132 QYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNL 160
+ +L L TL+L N L+ + + L +L L L+ N
Sbjct: 190 -AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 322 ASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381
A+ + L GN++S F +L IL L SN L I + L + L+LS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 382 FISPLPLEI-GNLKVLVGIDLSMNNFS 407
+ + L L + L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ 118
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 27/155 (17%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG + KA VA+K + + ER K+F V + ++
Sbjct: 20 AFGVVCKA-KWRAKDVAIKQIESESER--KAFIVELRQLSRVNHPNIVKLYGACLNPVCL 76
Query: 450 VLEYMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
V+EY GSL L+ + ++ + + + YLH +IH DLK N+
Sbjct: 77 VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNL 136
Query: 508 LL-GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH 541
LL V + DFG A + T N +
Sbjct: 137 LLVAGGTVLKICDFGTACDI---QTHMTNNKGSAA 168
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 27/152 (17%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
G ++K R Q G + VKV ++ R + F+ C ++
Sbjct: 22 HSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP 80
Query: 450 ------VLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+ +MP+GSL L+ +N+++D Q + +D+A + +LH I L
Sbjct: 81 APHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHAL 139
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
+V++ +M A +S + + +
Sbjct: 140 NSRSVMIDEDMTARISMADVKFSFQSPGRMYA 171
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL----------------- 449
FG++YK + VAVK+ ++ + ++F +++K
Sbjct: 37 FGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL 94
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
V ++ SL L++S ++ + ++I A ++YLH + IIH DLK +N+
Sbjct: 95 AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNI 151
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
L + + DFG+A + S +
Sbjct: 152 FLHEDNTVKIGDFGLATEKSRWSGSHQFEQLS 183
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 62/299 (20%), Positives = 122/299 (40%), Gaps = 36/299 (12%)
Query: 120 LGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWG 175
LA + + +T T + +L ++ L +T + + NL L L
Sbjct: 15 DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72
Query: 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
N + P + N +K++ LEL N ++ L ++K L+L +T +++
Sbjct: 73 NQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT----DVTP 124
Query: 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295
L LSN L+V + I+ + ++ LTNL + + +++ P+
Sbjct: 125 LAGLSN----------LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLA-- 170
Query: 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355
L KL L DNK+ P L +L E+ L N++S P N ++L I++L +
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Query: 356 NKLISIIPSTLWNLKDILYLNLSSNFFISPL-PLEIGNLKVLVGIDLSMNNFSGFGSIY 413
+ + + +++ N+ +P+ P I + +L+ N S ++
Sbjct: 227 QTITNQPV---FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 5e-19
Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 32/265 (12%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+ ++T T+ +L + TL + +I + +++L+ + +N +
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQI- 75
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLE 169
L NL ++ L L N L S+I L S+ LDL+ +TDV + NL+
Sbjct: 76 -TDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
L L N + P + + L L + DL P NL L L DN ++
Sbjct: 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD- 187
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS 289
+S L SL N L + N IS + ++N +NL + L +
Sbjct: 188 ---ISPLASLPN----------LIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQ 232
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPI 314
L ++ P
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPA 257
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L + +T+ S L L++LQ L + S + + + N+S L ++ ++N +
Sbjct: 132 QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKI-- 185
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
L +L L + L+NN ++ S + N S+L + L++ +T+ + NL++
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVV- 242
Query: 175 GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234
++ S + P T + NL N LTS +S
Sbjct: 243 -------------------PNVVKGPSGAPIAPATISDNGTYASPNLTWN-LTSFINNVS 282
Query: 235 FLYSLS 240
+ ++ S
Sbjct: 283 YTFNQS 288
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 9e-24
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 35/170 (20%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFK-----------------SFDVACDMMKK-- 448
FG +++ + + G +VAVK+F + ER++ F A +
Sbjct: 54 RFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW 112
Query: 449 ----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-----FGYSTPIIH 499
LV +Y HGSL L + Y + + + + + A L +LH I H
Sbjct: 113 TQLWLVSDYHEHGSLFDYL--NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAH 170
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR 549
DLK N+L+ N ++D G+A D + +HR+ GT+R
Sbjct: 171 RDLKSKNILVKKNGTCCIADLGLAVRH---DSATDTIDIAPNHRV-GTKR 216
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 28/154 (18%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
FG +Y R +VA+++ D++ E K+F ++
Sbjct: 45 RFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP 102
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+ +L + + +LD+ + I ++ + YLH + I+H DLK
Sbjct: 103 HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSK 159
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
NV N V ++DFG+ + ++
Sbjct: 160 NVFYDNGKV-VITDFGLFSISGVLQAGRREDKLR 192
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 71/373 (19%), Positives = 123/373 (32%), Gaps = 29/373 (7%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
L++S S++ ++ LS L+ L LS N S+ +F L + ++N L
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENL 171
I +A L L L N F NL+ L+ L LS + + + +L
Sbjct: 113 -QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
Query: 172 LL---WGNNFSGAIPHFIFNA-----SKLSILELQKNSFFDLIPNTFGN------LINLK 217
L + S I + + + L NS F + N N L N+K
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229
Query: 218 RLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILE-EISNLTNL 276
+ L + EL+ +L N + +F + I NLT
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-- 287
Query: 277 TAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
+ + L+ L + + + A + LS +
Sbjct: 288 ----ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF--ISPLPLEIGNLK 394
C + +S L+ N + LK + L L N + L N+
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 395 VLVGIDLSMNNFS 407
L +D+S+N+ +
Sbjct: 404 SLETLDVSLNSLN 416
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 67/391 (17%), Positives = 122/391 (31%), Gaps = 66/391 (16%)
Query: 55 TTLNISGLSLTS-TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L++S + E GNL+ L L LS F + L I + +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYH 182
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS-------SLSDLDLSHNNLTDVQI- 165
+ E +L T L F ++ S N+S LS++ L+ N +
Sbjct: 183 IK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241
Query: 166 -------PNLENLLLWGNNFSGAIPHFIFNASKLSILE--------LQKNSFFDLIPNTF 210
P L N+ L + +F +E + + + +
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301
Query: 211 GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSS------------QSLEVFSMF 258
L +L ++ + S L +++ N K L S S +
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361
Query: 259 NCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318
+ + + S L L + L N L + + + L +D L + +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420
Query: 319 CRL--------------------------ASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352
R + LDL N++ SIP + +L+ L+
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479
Query: 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFI 383
+ SN+L S+ L + Y+ L N +
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 26/184 (14%)
Query: 45 VSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLS 104
+ C T LN + T ++ L LQTL L N + ++ S
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404
Query: 105 IYFNNNTL----FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNL 160
+ + +L + L L +N LTG++ + + LDL +N +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI 462
Query: 161 TDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLN 220
+IP + + L L + N + F L +L+ +
Sbjct: 463 M-------------------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 221 LYDN 224
L+DN
Sbjct: 504 LHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 54/373 (14%), Positives = 109/373 (29%), Gaps = 72/373 (19%)
Query: 148 SSLSDLDLSHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD 204
S +D S+ NLT V +P + L L N+ S I S+L +L L N
Sbjct: 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 205 LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264
L + F +L+ L++ N L + +S
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQN----ISC----------------------------- 117
Query: 265 GILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASL 324
+ +L + L+ N + +P+ EF L L
Sbjct: 118 ------CPMASLRHLDLSFNDFD-VLPVC----------------------KEFGNLTKL 148
Query: 325 YELDLSGNKLSGSIPTCFGN-QTSLRILSLDSNKLISIIPSTLWNLK-DILYLNLSSNFF 382
L LS K + S +L L S + +L +L+L N
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 383 ISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVA 442
S ++ L + LS + + + ++ + ++ +
Sbjct: 209 FSVQVN--MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266
Query: 443 CDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVA--LALEYLHFGYSTPIIHC 500
+ + + + ++ + + F + ++ F +S ++
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326
Query: 501 DLKLSNVL-LGNN 512
N+ L +
Sbjct: 327 VFAEMNIKMLSIS 339
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 57/301 (18%), Positives = 99/301 (32%), Gaps = 45/301 (14%)
Query: 91 SIPSSIFNMSSLLSIYFNNN--TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS 148
SI I N SL F N + + + N + + ++
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59
Query: 149 SLSDLDLSHNNLT---DVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205
S+L L+ NL+ D P + L + N ++P + L L+ N L
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLSTL 115
Query: 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG 265
P +L K L++ +N LT L + LE + N ++
Sbjct: 116 -PELPASL---KHLDVDNNQLTM----------------LPELPALLEYINADNNQLTM- 154
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASL- 324
+ E ++L L + N+L +P L+ L + N LE +P R
Sbjct: 155 LPELPTSLEVL---SVRNNQLT-FLPELPESLEALDVS---TNLLES-LPAVPVRNHHSE 206
Query: 325 ---YELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381
N+++ IP + + L+ N L S I +L + +
Sbjct: 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 382 F 382
F
Sbjct: 266 F 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 9e-21
Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 36/280 (12%)
Query: 55 TTLNISGLS---LTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT 111
+ G + S + L ++ L L+ S S+P ++ + + N
Sbjct: 37 EKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA 91
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--QIPNLE 169
L +PE +L E L +N L+ T+ +SL LD+ +N LT + LE
Sbjct: 92 L-ISLPELPASL---EYLDACDNRLS-TLPELP---ASLKHLDVDNNQLTMLPELPALLE 143
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229
+ N + +P + L +L ++ N L P +L+ L++ N L S
Sbjct: 144 YINADNNQLT-MLPELP---TSLEVLSVRNNQLTFL-PEL---PESLEALDVSTNLLESL 195
Query: 230 TPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGS 289
+ ++ F I+ I E I +L I L N L+
Sbjct: 196 PAVPVRNHHSE---------ETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDL 329
I +L + + L +
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 13/192 (6%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLS----IYFNNN 110
L++ LT +P +L + LD+S N S+P+ N
Sbjct: 163 EVLSVRNNQLTF-LPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217
Query: 111 TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLEN 170
+ IPE + +L T+ L++N L+ I S+ ++ D +
Sbjct: 218 RI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
Query: 171 LLLWGNNFSGAIPHFIFNASKLSILELQK---NSFFDLIPNTFGNLINLKRLNLYDNYLT 227
+ + P + + + F + + ++ + + + +
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVA 336
Query: 228 SSTPELSFLYSL 239
+ +LS L
Sbjct: 337 AWLEKLSASAEL 348
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 9e-23
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 24/143 (16%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG K + G + +K E ++F +M+ L
Sbjct: 23 FGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRL 82
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+ EY+ G+L + S + QR++ D+A + YLH S IIH DL N
Sbjct: 83 NFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNC 139
Query: 508 LLGNNMVAHLSDFGMAKLLLKED 530
L+ N ++DFG+A+L++ E
Sbjct: 140 LVRENKNVVVADFGLARLMVDEK 162
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 61/266 (22%), Positives = 96/266 (36%), Gaps = 68/266 (25%)
Query: 124 AELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI------PNLENLLLWGN 176
+ L L N L + S F + L LDLS + ++ +L L+L GN
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 177 NFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
++ F+ S L L + + L G+L LK LN+ N + S
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------- 138
Query: 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI-TL 294
++ F SNLTNL + L+ NK+ SI L
Sbjct: 139 ----------------FKLPEYF------------SNLTNLEHLDLSSNKIQ-SIYCTDL 169
Query: 295 CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLD 354
L ++ LL+ LDLS N ++ I + L+ L+LD
Sbjct: 170 RVLHQMPLLNL--------------------SLDLSLNPMN-FIQPGAFKEIRLKELALD 208
Query: 355 SNKLISIIPSTLWNLKDILYLNLSSN 380
+N+L S+ L + + L +N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGN 332
+ + L+ N L + +LQ+L +++ I + L+ L L L+GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86
Query: 333 KLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE-- 389
+ S+ F +SL+ L L S+ + +LK + LN++ N I L
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144
Query: 390 ---IGNLKVLVGIDLSMNNFS 407
+ NL+ L DLS N
Sbjct: 145 FSNLTNLEHL---DLSSNKIQ 162
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 35/157 (22%)
Query: 408 GFGSIYKARIQDGMKVAVKVF----DLQYERAFKSFDVACDMMKKL-------------- 449
GFG +Y+A G +VAVK D + ++ + L
Sbjct: 19 GFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK 77
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+E+ G L + L + +N + +A + YLH PIIH DLK
Sbjct: 78 EPNLCLVMEFARGGPLNRVLSGKR--IPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK 135
Query: 504 LSNVLLGN--------NMVAHLSDFGMAKLLLKEDQS 532
SN+L+ N + ++DFG+A+ + +
Sbjct: 136 SSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM 172
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 3e-21
Identities = 55/267 (20%), Positives = 94/267 (35%), Gaps = 46/267 (17%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
N+ S+T + L+S+ + + + S+ I + ++ ++ N N L
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL- 77
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
+I + L NL L L+L N + + SS+ +L L L L HN ++D I L +L
Sbjct: 78 TDI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISD--INGLVHL-- 130
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
+L L L N D+ L L L+L DN ++ +
Sbjct: 131 ----------------PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD----I 168
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
L L+ L+ + +IS L ++ L NL + L +
Sbjct: 169 VPLAGLTK----------LQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINH 216
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCR 320
L + D L P
Sbjct: 217 QSNLVVPNTVKNTDGSLVTPEIISDDG 243
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 8e-20
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 30/248 (12%)
Query: 118 EELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLL 173
AE L+ +T + L+S+ + +++++ VQ +PN+ L L
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 72
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
GN + P + N L L L +N DL +L LK L+L N ++ +
Sbjct: 73 NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD----I 124
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
+ L L LE + N I+ + +S LT L + L N+++ I
Sbjct: 125 NGLVHLPQ----------LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP- 170
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353
L L KLQ L N + L +L L+L + N +
Sbjct: 171 LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228
Query: 354 DSNKLISI 361
L++
Sbjct: 229 TDGSLVTP 236
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 4e-19
Identities = 55/296 (18%), Positives = 96/296 (32%), Gaps = 49/296 (16%)
Query: 131 LQNNFLTGTIHSSIFNLSSLSD---LDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIF 187
+ T IF + ++ +L ++TD L
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTD--AVTQNEL---------------- 42
Query: 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247
+ + + + + L N+ +L L N LT + L +L N +L
Sbjct: 43 --NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD----IKPLTNLKNLGWL-- 92
Query: 248 SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307
+ I L + +L L ++ L N ++ I L L +L+ L +
Sbjct: 93 --------FLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGN 140
Query: 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367
NK+ RL L L L N++S I T L+ L L N + + L
Sbjct: 141 NKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDL--RALA 194
Query: 368 NLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKV 423
LK++ L L S ++ NL V + + + I + V
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 3e-20
Identities = 60/311 (19%), Positives = 89/311 (28%), Gaps = 41/311 (13%)
Query: 110 NTLFGEIPEELGNLAELETLWLQNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTDVQIPNL 168
N L E G LE L + + + I SL L + + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI--NLKRLNLYDNYL 226
+L S L L L+ P +L LNL +
Sbjct: 89 LRVL---------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
+ L+ L L+V S+ + E++ L+ + L+ N
Sbjct: 134 ATRDAWLAELQQWLK--------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 287 NGSI-------PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339
G P+ LQ L L + G L LDLS N L +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 340 -TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS-PLPLEIGNLKVLV 397
+ L L+L L + L L+LS N P P E+ + L
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGNL- 301
Query: 398 GIDLSMNNFSG 408
L N F
Sbjct: 302 --SLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 1e-17
Identities = 51/278 (18%), Positives = 80/278 (28%), Gaps = 37/278 (13%)
Query: 29 LAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88
L K +T + + +T + + R+T S + +S LQ L L
Sbjct: 48 LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107
Query: 89 SGSIPSSIFN--MSSLLSIYFNNNTL--FGEIPEELGNLAE--LETLWLQNNFLTGTIHS 142
+G+ P + L + N + EL + L+ L +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167
Query: 143 SIFNLSSLSDLDLSHNNLT----------DVQIPNLENLLLWGNNF---SGAIPHFIFNA 189
+ +LS LDLS N ++ P L+ L L SG
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 190 SKLSILELQKNSFFDLIPN-TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
+L L+L NS D + L LNL L L
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--------------- 272
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
L V + + L + + L GN
Sbjct: 273 PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-13
Identities = 43/215 (20%), Positives = 68/215 (31%), Gaps = 13/215 (6%)
Query: 1 LEVDIDNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNIS 60
E+ ++N ++ T N L + +T W + L+I+
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 61 GLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSI----FNMSSLLSIYFNNN---TLF 113
+ ++ +L TLDLS N G +L + N T
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ---IPNLE 169
G +L+ L L +N L + S L+ L+LS L V L
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277
Query: 170 NLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD 204
L L N P ++ L L+ N F D
Sbjct: 278 VLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 55 TTLNISGLSLTS---TIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNN 110
L + + + + LQ LDLS N + + S L S+ +
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 111 TLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ 164
L ++P+ L A+L L L N L S L + +L L N D +
Sbjct: 264 GL-KQVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDSE 312
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 31/216 (14%), Positives = 58/216 (26%), Gaps = 27/216 (12%)
Query: 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEE 269
+G +L+ L + + SLS L+ ++ I IL
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-----------LKRLTVRAARIPSRILFG 87
Query: 270 IS---NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF------CR 320
++ L + L ++ G+ P L + L + +
Sbjct: 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-------SIIPSTLWNLKDIL 373
L L ++ +L L L N + ++ P L+ +
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 374 YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409
N L G+DLS N+
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 46/268 (17%)
Query: 118 EELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNN 177
AE L+ +T + L+S+ + +++++ + ++ L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS--VQGIQYL------ 67
Query: 178 FSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237
++ L L N D+ P NL NL L L +N + LS L
Sbjct: 68 ------------PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD----LSSLK 109
Query: 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKL 297
L L+ S+ + IS + + +L L ++YL NK+ + L +L
Sbjct: 110 DLKK----------LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRL 155
Query: 298 QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357
KL LS DN++ +P L L L LS N +S + +L +L L S +
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQE 211
Query: 358 LISIIPSTLWNLKDILYLNLSSNFFISP 385
++ + NL + + ++P
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTP 239
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 30/248 (12%)
Query: 70 SELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
+ +L + ++ + ++S+ I NN+ + + + + L + L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI--KSVQGIQYLPNVTKL 73
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHF 185
+L N LT + NL +L L L N + D+ + L++L L N S
Sbjct: 74 FLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-- 129
Query: 186 IFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYL 245
+ + +L L L N D+ L L L+L DN ++ + L L+
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD----IVPLAGLTK---- 179
Query: 246 EQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSF 305
L+ + +IS L ++ L NL + L + L +
Sbjct: 180 ------LQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 306 VDNKLEGP 313
D L P
Sbjct: 232 TDGSLVTP 239
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
Query: 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326
+ L + +T +L + + ++ ++ ++ L ++ +
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTK 72
Query: 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL 386
L L+GNKL+ P N +L L LD NK+ + S+L +LK + L+L N
Sbjct: 73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN 128
Query: 387 PLEIGNLKVLVGIDLSMNN 405
L +L L + L N
Sbjct: 129 GLV--HLPQLESLYLGNNK 145
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 11/139 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+L + +T + L L+ L TL L N S I + ++ L ++Y + N +
Sbjct: 137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHI-- 190
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI----PNLEN 170
L L L+ L L + + NL + + + +L +I + E
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250
Query: 171 L-LLWGNNFSGAIPHFIFN 188
+ W FIF
Sbjct: 251 PNVKWHLPEFTNEVSFIFY 269
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-18
Identities = 31/190 (16%), Positives = 65/190 (34%), Gaps = 22/190 (11%)
Query: 191 KLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQ 250
L ++S ++ T + +L + L + +T L+ + N
Sbjct: 24 AYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTD----LTGIEYAHN--------- 67
Query: 251 SLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKL 310
++ ++ N + + IS L+NL + + G + L L L LL +
Sbjct: 68 -IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 311 EGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK 370
+ I + L + +DLS N I L+ L++ + + + +
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181
Query: 371 DILYLNLSSN 380
+ L S
Sbjct: 182 KLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-17
Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 27/176 (15%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
+T + ++ +++T + + +++ L ++ + + I +S+L + +
Sbjct: 46 LTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN-LTDVQIPNLENLL 172
+ L L L L + ++ +I + I L ++ +DLS+N +TD I L+ L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTL- 158
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228
+L L +Q + D + L +L + +
Sbjct: 159 -----------------PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 121 GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGN 176
+ L + L N +T + I ++ DL +++ + T+ + NLE L + G
Sbjct: 41 AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
+ + + + L++L++ ++ D I L + ++L N + + L
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD---IMPL 155
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288
+L L+ ++ + I + L +Y + G
Sbjct: 156 KTLPE----------LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-15
Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 40/215 (18%)
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGA 181
L + + ++SL+ + L++ N+TD + +E
Sbjct: 21 TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTD--LTGIEYA---------- 65
Query: 182 IPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN 241
+ L + + P L NL+RL + +TS +LS
Sbjct: 66 --------HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIP-----NLSG 110
Query: 242 CKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ 301
SL + + + IL +I+ L + +I L+ N I L L +L+
Sbjct: 111 LT-------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162
Query: 302 LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
L+ + + E L +L + G
Sbjct: 163 SLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L I G +TS L L+SL LD+S + SI + I + + SI + N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ 164
+I L L EL++L +Q + + I + L+ L + +
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-13
Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 5/144 (3%)
Query: 269 EISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELD 328
+ + +LT I LA + I ++ L+ + P L++L L
Sbjct: 39 TEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94
Query: 329 LSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPL 388
+ G ++ TSL +L + + I + + L + ++LS N I+ +
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM- 153
Query: 389 EIGNLKVLVGIDLSMNNFSGFGSI 412
+ L L +++ + + I
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGI 177
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
S L + + IT ++ L ++ + + E+ ++ +L ++
Sbjct: 20 STFKAYLNGLL---GQSSTANITEAQMNSLTYITLANINVTDLTGIEY--AHNIKDLTIN 74
Query: 331 GNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI 390
+ P ++L L + + S L L + L++S + + +I
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 391 GNLKVLVGIDLSMNN 405
L + IDLS N
Sbjct: 133 NTLPKVNSIDLSYNG 147
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 41/232 (17%), Positives = 72/232 (31%), Gaps = 29/232 (12%)
Query: 37 STVCHWTGVSCDVRSYRVT-----------TLNISGLSLTSTIPSELGNLSSLQTLDLSF 85
+CH + + +VT L L L+ +++S
Sbjct: 4 HRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63
Query: 86 NWFSGSIPSSIF-NMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSS 143
N I + +F N+ L I I E NL L+ L + N + +
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122
Query: 144 IF-NLSSLSDLDLSHNN-LTDVQ-------IPNLENLLLWGNNFSGAIPHFIFNASKLSI 194
+ LD+ N + ++ L L N I + FN ++L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE 181
Query: 195 LELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPE----LSFLYSLSN 241
L L N+ + +P + F L++ + S L L + S
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 29/256 (11%)
Query: 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
+ L + + IP + L + F +L+++ + N +
Sbjct: 10 SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCN----ISGGILEEISNLTNLTAIYLA 282
F +L + + N I+ + NL NL + ++
Sbjct: 67 LEVIEADVF-SNLPKLHEIR----------IEKANNLLYINPEAFQ---NLPNLQYLLIS 112
Query: 283 GNKLNGSIP-ITLCKLQKLQLLSFVDN-KLEGPIPYEFCRLAS-LYELDLSGNKLSGSIP 339
+ +P + + LL DN + F L+ L L+ N +
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEI-GNLKVLVG 398
+ F + D+N L + + L++S I LP NLK L
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKL-- 228
Query: 399 IDLSMNNFSGFGSIYK 414
S N ++ K
Sbjct: 229 RARSTYNLKKLPTLEK 244
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 47/240 (19%)
Query: 146 NLSSLSDLDLSHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF 202
++S +++ NLT + +P + L L N + ++L+ L L +
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 203 FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262
L G L L L+L N L S
Sbjct: 68 TKL--QVDGTLPVLGTLDLSHNQLQS---------------------------------- 91
Query: 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPI-TLCKLQKLQLLSFVDNKLEGPIPYEFCRL 321
+ L LT + ++ N+L S+P+ L L +LQ L N+L+ P
Sbjct: 92 ---LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 322 ASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L +L L+ N L+ +P +L L L N L + IP + + + L N
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 50/265 (18%), Positives = 80/265 (30%), Gaps = 73/265 (27%)
Query: 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133
++S ++ + ++P + + L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--------------------------KDTTILHLSE 40
Query: 134 NFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI----PNLENLLLWGNNFSGAIPHFIFN 188
N L T + + L+ L+L LT +Q+ P L L L N ++P
Sbjct: 41 NLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQT 98
Query: 189 ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248
L++L++ N L L L+ L L N L +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-------------------- 138
Query: 249 SQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVD 307
+ G+L + L + LA N L +P L L+ L L +
Sbjct: 139 -------------LPPGLL---TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 308 NKLEGPIPYEFCRLASLYELDLSGN 332
N L IP F L L GN
Sbjct: 182 NSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 23/207 (11%)
Query: 35 TSSTVCHWTGVSCDVRSYR---------VTTLNISGLSLTSTIPSELGNLSSLQTLDLSF 85
S V V+CD R+ T L++S L + + L + L L+L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 86 NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145
+ + + L ++ ++N L +P L L L + N LT ++
Sbjct: 65 AELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120
Query: 146 -NLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNA-SKLSILEL 197
L L +L L N L + P LE L L NN + +P + N L L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179
Query: 198 QKNSFFDLIPNTFGNLINLKRLNLYDN 224
Q+NS + + FG+ L L+ N
Sbjct: 180 QENSLYTIPKGFFGSH-LLPFAFLHGN 205
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 20/206 (9%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
TL + L + NL ++ + +S + + S F N+S + I N
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 113 FGEIPEE-LGNLAELETLWLQNNFLTGTI--HSSIFNLSSLSDLDLSHNN-LTDVQ---- 164
I + L L L+ L + N L + +++ L+++ N +T +
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 165 ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLIN-LKRL 219
L L+ N F+ ++ + FN +KL + L KN + +I + FG + + L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 220 NLYDNYLTSSTPE----LSFLYSLSN 241
++ +T+ + L L + +
Sbjct: 211 DVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 14/183 (7%)
Query: 53 RVTTLNISGLSLTSTIPSEL-GNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNN 110
++ + +S + S NLS + +++ I + L + N
Sbjct: 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Query: 111 TLFGEIPEE--LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLS-DLDLSHNNLTDVQI- 165
L P+ + + L + +N +I + F L + + L L +N T VQ
Sbjct: 116 GL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174
Query: 166 ----PNLENLLLWGNNFSGAIPHFIFN--ASKLSILELQKNSFFDLIPNTFGNLINLKRL 219
L+ + L N + I F S S+L++ + S L +L L
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Query: 220 NLY 222
N +
Sbjct: 235 NTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 58/260 (22%)
Query: 123 LAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGA 181
+TL L L TI S F NL ++S + +S + + LE+ ++F
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV----TLQQLES-----HSFYNL 79
Query: 182 IPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
SK++ +E++ I + L LK L +++ L P+L+ +YS
Sbjct: 80 --------SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130
Query: 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTA-IYLAGNKLNGSIPITLCKLQK 299
LE + N ++ + L N T + L N S+
Sbjct: 131 IFFILEITD---------NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ-------- 172
Query: 300 LQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CF-GNQTSLRILSLDSNK 357
Y F L + L+ NK I F G + +L +
Sbjct: 173 ---------------GYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Query: 358 LISIIPSTLWNLKDILYLNL 377
+ ++ L +LK+++ N
Sbjct: 217 VTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPS-TLWNLKDILYLNLSS 379
S L L L F N ++ + + + + + S + +NL + ++ + +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 380 NFFISPLPLEI-GNLKVLVGIDLSMNNFSGF 409
++ + + L +L + + F
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 65/238 (27%), Positives = 97/238 (40%), Gaps = 47/238 (19%)
Query: 150 LSDLDLSHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDL 205
+ +D S LT + IP + + L L N S ++P F+ +KL +L L N L
Sbjct: 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG 265
F L NL+ L + DN L + + G
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQA---------------------------------LPIG 103
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVDNKLEGPIPYE-FCRLAS 323
+ L NL + L N+L S+P + L KL LS N+L+ +P F +L S
Sbjct: 104 VF---DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTS 158
Query: 324 LYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L EL L N+L +P F T L+ L LD+N+L + +L+ + L L N
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFN-MSSLLSIYFNNNTLF 113
L++ L+S L+ L+ L L+ N ++P+ IF + +L +++ +N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL- 97
Query: 114 GEIPEEL-GNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDV------QI 165
+P + L L L L N L ++ +F +L+ L+ L L +N L + ++
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 166 PNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
+L+ L L+ N +P F ++L L+L N + F +L LK L L +N
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 49/238 (20%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
+++ S LT+ IPS + + LDL N S S+PS F+
Sbjct: 19 NSVDCSSKKLTA-IPS--NIPADTKKLDLQSNKLS-SLPSKAFH---------------- 58
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDV------QIPN 167
L +L L+L +N L T+ + IF L +L L ++ N L + Q+ N
Sbjct: 59 -------RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 168 LENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226
L L L N ++P +F++ +KL+ L L N L F L +LK L LY+N L
Sbjct: 111 LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGN 284
PE +F L+ K L+ + L+ + G +L L + L N
Sbjct: 170 K-RVPEGAF-DKLTELKTLKLDNNQLK-------RVPEGAF---DSLEKLKMLQLQEN 215
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 3e-17
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 21/185 (11%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
L+ S L + +P L S LDLS N S +++L S+ ++N L
Sbjct: 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL- 76
Query: 114 GEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQ------I 165
I E + L L L +N L T+ +F +L +L L L +N++ V +
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 166 PNLENLLLWGNNFSGAIPHFIFNA----SKLSILELQKNSFFDLIPNTFGNLINLKR--L 219
L+ L L N S P + KL +L+L N L L + L
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Query: 220 NLYDN 224
L++N
Sbjct: 195 YLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 61/300 (20%), Positives = 98/300 (32%), Gaps = 72/300 (24%)
Query: 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE--LGNLAELETLWLQNN 134
+ L S ++P S+ + ++LL + NN + + E L L +L L +N
Sbjct: 19 ASNILSCSKQQLP-NVPQSLPSYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHN 74
Query: 135 FLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIF-NASKL 192
L I S F + +L LDLS N+L + F+F + L
Sbjct: 75 HLN-FISSEAFVPVPNLRYLDLSSNHLH-------------------TLDEFLFSDLQAL 114
Query: 193 SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSL 252
+L L N + N F ++ L++L L N ++
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR------------------------ 150
Query: 253 EVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL--LSFVDNKL 310
++++ + L L + L+ NKL L KL L +N L
Sbjct: 151 ---------FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
Query: 311 EGPIPYEFCRLASL----YELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366
E C+L L LS C ++ I SLD S
Sbjct: 202 EC-----DCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAW 256
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 42/196 (21%)
Query: 215 NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT 274
L+L N L+ E + + LT
Sbjct: 40 YTALLDLSHNNLSRLRAEWTP-----------------------------------TRLT 64
Query: 275 NLTAIYLAGNKLNGSIPI-TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
NL ++ L+ N LN I + L+ L N L + F L +L L L N
Sbjct: 65 NLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPST---LWNLKDILYLNLSSNFFISPLPLE 389
+ + F + L+ L L N++ L ++ L+LSSN +
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 390 IGNLKVLVGIDLSMNN 405
+ L V L ++N
Sbjct: 183 LQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 274 TNLTAIYLAGNKLNGSIP--ITLCKLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLS 330
+ + L+ N L + T +L L L N L I E F + +L LDLS
Sbjct: 39 SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96
Query: 331 GNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE 389
N L ++ F + +L +L L +N ++ + + ++ + L LS N IS P+E
Sbjct: 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154
Query: 390 I----GNLKVLVGIDLSMNNFS 407
+ L L+ +DLS N
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK 176
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 35/160 (21%), Positives = 50/160 (31%), Gaps = 35/160 (21%)
Query: 409 FGSIYKAR----IQDGMKVAVKVF---DLQYERAFKSFDVACDMMKKL------------ 449
FG + + + VAVK L A F + M L
Sbjct: 31 FGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV 90
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIH 499
V E P GSL L + + VA + YL F IH
Sbjct: 91 LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRF------IH 144
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
DL N+LL + + DFG+ + L + D + +
Sbjct: 145 RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHR 184
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 32/152 (21%)
Query: 409 FGSIYKARIQDG---MKVAVKV----FDLQYERAF-------KSFD---------VACDM 445
FGS+ + + + VA+KV + D V
Sbjct: 23 FGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE 82
Query: 446 MKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCDL 502
LV+E G L K L + + ++ V++ ++YL +F +H DL
Sbjct: 83 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF------VHRDL 136
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
NVLL N A +SDFG++K L +D +T
Sbjct: 137 AARNVLLVNRHYAKISDFGLSKALGADDSYYT 168
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 40/161 (24%)
Query: 409 FGSIYKARIQDG---MKVAVKV-----FDLQYERAFKSFDVACDMMKKL----------- 449
FG++ K Q VAVK+ D + + ++M++L
Sbjct: 30 FGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA---EANVMQQLDNPYIVRMIGI 86
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPII 498
V+E G L K L + + + + ++ V++ ++YL +F +
Sbjct: 87 CEAESWMLVMEMAELGPLNKYLQQNRH-VKDKNIIELVHQVSMGMKYLEESNF------V 139
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
H DL NVLL A +SDFG++K L ++ + T+
Sbjct: 140 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHG 180
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 6e-16
Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 48/197 (24%)
Query: 36 SSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSS 95
C T V C S L IP + L L+ N F+ +
Sbjct: 7 EKCRCEGTTVDC------------SNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATG 51
Query: 96 IFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLD 154
IF L +L + NN +T I F S ++++
Sbjct: 52 IFK-----------------------KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87
Query: 155 LSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIP 207
L+ N L +VQ + +L+ L+L N + + + F S + +L L N + P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Query: 208 NTFGNLINLKRLNLYDN 224
F L +L LNL N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
L L I + NK+ + + N+LE F L SL L L
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113
Query: 331 GNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
N+++ + F +S+R+LSL N++ ++ P L + LNL +N
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 301 QLLSFVDNKLEG-PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359
L +N+ F +L L +++ S NK++ F + + + L SN+L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 360 SIIPSTLWNLKDILYLNLSSN 380
++ L+ + L L SN
Sbjct: 95 NVQHKMFKGLESLKTLMLRSN 115
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 7e-16
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 32/148 (21%)
Query: 409 FGSIYKARIQDG---MKVAVKV----FDLQYERAF-------KSFD---------VACDM 445
FGS+ + + + VA+KV + D V
Sbjct: 349 FGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE 408
Query: 446 MKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCDL 502
LV+E G L K L + + ++ V++ ++YL +F +H +L
Sbjct: 409 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF------VHRNL 462
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKED 530
NVLL N A +SDFG++K L +D
Sbjct: 463 AARNVLLVNRHYAKISDFGLSKALGADD 490
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 34/151 (22%)
Query: 409 FGSIYKARIQDG-----MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------- 449
FG++YK + VA+K + +A K +M +
Sbjct: 28 FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICL 87
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHC 500
+ + MP G L + + LN + +A + YL +H
Sbjct: 88 TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL------VHR 141
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
DL NVL+ ++DFG+AKLL E++
Sbjct: 142 DLAARNVLVKTPQHVKITDFGLAKLLGAEEK 172
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 31/153 (20%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
GF + + DG A+K ++ + DM +
Sbjct: 41 GFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERG 100
Query: 450 -------VLEYMPHGSLEKCLY---SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
+L + G+L + L Q L +++ + LE +H + H
Sbjct: 101 AKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAH 157
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
DLK +N+LLG+ L D G +
Sbjct: 158 RDLKPTNILLGDEGQPVLMDLGSMNQACIHVEG 190
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 34/147 (23%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL----------------- 449
FG ++ + KVA+K E F ++M KL
Sbjct: 21 FGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---EAEVMMKLSHPKLVQLYGVCLEQAP 77
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCDLK 503
V E+M HG L L + + L + +DV + YL IH DL
Sbjct: 78 ICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV------IHRDLA 131
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKED 530
N L+G N V +SDFGM + +L +
Sbjct: 132 ARNCLVGENQVIKVSDFGMTRFVLDDQ 158
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 45/245 (18%)
Query: 70 SELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
L++ +L S + S +S + + +N+ + + + L+ L
Sbjct: 13 FPDPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA 189
L +N ++ + S + +L+ L +L ++ N L + + + +
Sbjct: 69 HLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKN--LNGIPSA------------------ 106
Query: 190 SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSS 249
LS L L N D +L NL+ L++ +N L S + L LS
Sbjct: 107 -CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS----IVMLGFLSK-------- 151
Query: 250 QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
LEV + I+ ++ L + I L G K +L + D +
Sbjct: 152 --LEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207
Query: 310 LEGPI 314
P
Sbjct: 208 WISPY 212
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 27/209 (12%)
Query: 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247
+ L K S DL+ L ++ N ++ + S L+ + +N K L
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS----LAGMQFFTNLKEL-- 68
Query: 248 SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307
+ + IS L + +LT L + + N+L I L +L L +
Sbjct: 69 --------HLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL---DN 115
Query: 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367
N+L L +L L + NKL SI G + L +L L N++ + L
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT--GGLT 169
Query: 368 NLKDILYLNLSSNFFISPLPLEIGNLKVL 396
LK + +++L+ ++ L +
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
L+++ L + + L L L N S+ ++ +L + NN L
Sbjct: 88 EELSVNRNRLKNL---NGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNNKL-- 140
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
+ LG L++LE L L N +T + L ++ +DL+ + + L +
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 37/162 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL---------------------QYERAFKSFDVACDM 445
GFG ++KA+ DG +K Y + FD +
Sbjct: 23 GFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET 82
Query: 446 MKK-----------LVLEYMPHGSLEKCL-YSSNYILDIFQRLNIMIDVALALEYLHFGY 493
K + +E+ G+LE+ + LD L + + ++Y+H
Sbjct: 83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH--- 139
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
S +I+ DLK SN+ L + + DFG+ L + +
Sbjct: 140 SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRS 181
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 29/146 (19%)
Query: 409 FGSIYKARIQ-DGMKVAVKVF----DLQYERAF-------KSFD---------VACD--- 444
FG ++ R++ D VAVK + F K + V
Sbjct: 127 FGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQP 186
Query: 445 MMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
+ +V+E + G L + L + L ++ D A +EYL S IH DL
Sbjct: 187 IY--IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAA 241
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKED 530
N L+ V +SDFGM++
Sbjct: 242 RNCLVTEKNVLKISDFGMSREEADGV 267
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 30/149 (20%)
Query: 409 FGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL-------------- 449
FGS+ R G VAVK + F ++K L
Sbjct: 36 FGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG 95
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V+EY+P G L L LD + L + +EYL S +H D
Sbjct: 96 PGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRD 152
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
L N+L+ + ++DFG+AKLL +
Sbjct: 153 LAARNILVESEAHVKIADFGLAKLLPLDK 181
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 45/161 (27%)
Query: 409 FGSIYKARIQD--------GMKVAVKVFDLQYERAFKSFDVACDMMKKL----------- 449
F I+K ++ +V +KV D + +SF A MM KL
Sbjct: 21 FTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGV 80
Query: 450 ---------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPI 497
V E++ GSL+ L + ++I +L + +A A+ +L
Sbjct: 81 CVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTL------ 134
Query: 498 IHCDLKLSNVLL--------GNNMVAHLSDFGMAKLLLKED 530
IH ++ N+LL GN LSD G++ +L +D
Sbjct: 135 IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD 175
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 34/147 (23%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL----------------- 449
FG + + + VAVK+ E F M KL
Sbjct: 21 FGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQ---EAQTMMKLSHPKLVKFYGVCSKEYP 77
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCDLK 503
V EY+ +G L L S L+ Q L + DV + +L F IH DL
Sbjct: 78 IYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF------IHRDLA 131
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKED 530
N L+ ++ +SDFGM + +L +
Sbjct: 132 ARNCLVDRDLCVKVSDFGMTRYVLDDQ 158
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 409 FGSIYKARIQDG-----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG+++K + V +KV + + ++F++ + L
Sbjct: 26 FGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP 85
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V +Y+P GSL + L LN + +A + YL ++H +L
Sbjct: 86 GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLA 142
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
NVLL + ++DFG+A LL +D+
Sbjct: 143 ARNVLLKSPSQVQVADFGVADLLPPDDK 170
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 38/156 (24%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL----------------------------QYERAFKSF 439
+G ++K R +DG AVK + E+A++
Sbjct: 70 YGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG 129
Query: 440 DVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
+ L E SL++ + L Q + D LAL +LH S ++H
Sbjct: 130 GILY-----LQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVH 180
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
D+K +N+ LG L DFG+ L Q
Sbjct: 181 LDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQ 216
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 409 FGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
FG +Y + D + AVK + F +MK
Sbjct: 38 FGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR 97
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIH 499
VL YM HG L + + + + + + VA ++YL F +H
Sbjct: 98 SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF------VH 151
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
DL N +L ++DFG+A+ + ++
Sbjct: 152 RDLAARNCMLDEKFTVKVADFGLARDMYDKE 182
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 409 FGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL-------------- 449
FGS+ R G VAVK E + F+ +++K L
Sbjct: 54 FGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS 113
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
++EY+P+GSL L +D + L + +EYL + IH D
Sbjct: 114 AGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRD 170
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
L N+L+ N + DFG+ K+L ++
Sbjct: 171 LATRNILVENENRVKIGDFGLTKVLPQDK 199
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 30/158 (18%)
Query: 409 FGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL-------------- 449
FGS+ R G VAVK E + F+ +++K L
Sbjct: 23 FGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS 82
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
++EY+P+GSL L +D + L + +EYL + IH D
Sbjct: 83 AGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRD 139
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
L N+L+ N + DFG+ K+L ++ + F
Sbjct: 140 LATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPG 177
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 6e-15
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 37/178 (20%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
++ G LT IP+ L ++ + L N IP F+
Sbjct: 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIK-VIPPGAFS---------------- 53
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDV------QIPN 167
+L + L NN ++ + F L SL+ L L N +T++ + +
Sbjct: 54 -------PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105
Query: 168 LENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
L+ LLL N + + F L++L L N + TF L ++ ++L N
Sbjct: 106 LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 43/182 (23%)
Query: 156 SHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFG 211
LT++ +P + + L N IP F KL ++L N +L P+ F
Sbjct: 19 RGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
L +L L LY N +T +F
Sbjct: 78 GLRSLNSLVLYGNKITELPK---------------------SLF---------------E 101
Query: 272 NLTNLTAIYLAGNKLNGSIPI-TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
L +L + L NK+N + + L L LLS DNKL+ F L ++ + L+
Sbjct: 102 GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 331 GN 332
N
Sbjct: 161 QN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
+T I L N + P +KL+ + +N++ P F L SL L L GNK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392
++ +P F SL++L L++NK+ + +L ++ L+L N +
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 393 LKVLVGIDLSMNNF 406
L+ + + L+ N F
Sbjct: 151 LRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNT 111
++ +++S ++ P L SL +L L N + +P S+F + SL + N N
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANK 115
Query: 112 LFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158
+ + + +L L L L +N L + L ++ + L+ N
Sbjct: 116 I-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 34/147 (23%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL----------------- 449
FG + + + VA+K+ E F +M L
Sbjct: 37 FGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---EAKVMMNLSHEKLVQLYGVCTKQRP 93
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCDLK 503
+ EYM +G L L + Q L + DV A+EYL F +H DL
Sbjct: 94 IFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF------LHRDLA 147
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKED 530
N L+ + V +SDFG+++ +L ++
Sbjct: 148 ARNCLVNDQGVVKVSDFGLSRYVLDDE 174
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 33/149 (22%)
Query: 409 FGSIYKARIQDG----MKVAVKVF----DLQYERAF-------KSFD---------VACD 444
FG +Y+ + + VAVK L + F K+ D + +
Sbjct: 25 FGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE 84
Query: 445 MMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCD 501
+++E P+G L L + L + + + + A+ YL + +H D
Sbjct: 85 EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC------VHRD 138
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ + N+L+ + L DFG+++ + ED
Sbjct: 139 IAVRNILVASPECVKLGDFGLSRYIEDED 167
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 409 FGSIYKARIQDG----MKVAVKVF-DLQYERAFKSFDVACDMMKKL-------------- 449
FG +Y D ++ A+K + + ++F +M+ L
Sbjct: 34 FGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP 93
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIH 499
+L YM HG L + + S + ++ + VA +EYL F +H
Sbjct: 94 PEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF------VH 147
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
DL N +L + ++DFG+A+ +L +
Sbjct: 148 RDLAARNCMLDESFTVKVADFGLARDILDRE 178
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 409 FGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
FG +Y + D + AVK + F +MK
Sbjct: 102 FGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR 161
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIH 499
VL YM HG L + + + + + + VA +++L F +H
Sbjct: 162 SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF------VH 215
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
DL N +L ++DFG+A+ + ++
Sbjct: 216 RDLAARNCMLDEKFTVKVADFGLARDMYDKE 246
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG ++ +VA+K A +MKKL
Sbjct: 280 FGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEA-QVMKKLRHEKLVQLYAVVSEEPIYI 338
Query: 450 VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
V EYM GSL L L + Q +++ +A + Y+ +H DL+ +N+L
Sbjct: 339 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANIL 395
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTN 538
+G N+V ++DFG+A+L+ + + Q
Sbjct: 396 VGENLVCKVADFGLARLIEDNEYTARQGAK 425
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 34/150 (22%)
Query: 409 FGSIYKARIQDG-----MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------- 449
FG++YK + VA+K + +A K +M +
Sbjct: 28 FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICL 87
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHC 500
+ + MP G L + + LN + +A + YL +H
Sbjct: 88 TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL------VHR 141
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
DL NVL+ ++DFG+AKLL E+
Sbjct: 142 DLAARNVLVKTPQHVKITDFGLAKLLGAEE 171
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG ++ +VA+K A +MKKL
Sbjct: 197 FGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEA-QVMKKLRHEKLVQLYAVVSEEPIYI 255
Query: 450 VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
V EYM GSL L L + Q +++ +A + Y+ +H DL+ +N+L
Sbjct: 256 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANIL 312
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTN 538
+G N+V ++DFG+A+L+ + + Q
Sbjct: 313 VGENLVCKVADFGLARLIEDNEYTARQGAK 342
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 409 FGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
G + R++ + VA+K Y ER + F +M +
Sbjct: 62 SGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR 121
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHC 500
V EYM +GSL+ L + + I Q + ++ V + YL + +H
Sbjct: 122 GRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY------VHR 175
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
DL NVL+ +N+V +SDFG++++L +
Sbjct: 176 DLAARNVLVDSNLVCKVSDFGLSRVLEDDP 205
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 85/411 (20%), Positives = 140/411 (34%), Gaps = 87/411 (21%)
Query: 54 VTTLNISGLSLTSTIPSELG-NLSSLQTLDLSFNWFS----GSIPSSIFNMSSLLSIYFN 108
+ +L+I L+ +EL L Q + L + I S++ +L +
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 109 NNTLFGEIPEELGNL-----AELETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNN 159
+N L + +++ L LQN LTG + S++ L +L +L LS N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 160 LTDVQI-----------PNLENLLLWGNNFSGAIPHFIFNA----SKLSILELQKNSFFD 204
L D + LE L L + S A + + L + N +
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184
Query: 205 -----LIPNTFGNLINLKRLNLYDNYLT-----------SSTPELSFLYSLSN------- 241
L + L+ L L +T +S L L L +
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA-LGSNKLGDVG 243
Query: 242 ----CKYLEQSSQSLEVFSMFNCNIS----GGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
C L S L ++ C I+ G + + +L + LAGN+L
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 294 LCKL-----QKLQLLSFVDNKLEGPIPYEFCR-LAS-------LYELDLSGNKL--SGSI 338
LC+ +L+ L C +S L EL +S N+L +G
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 339 PTCFG---NQTSLRILSLDSNKL----ISIIPSTLWNLKDILYLNLSSNFF 382
C G + LR+L L + S + +TL + L+LS+N
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 64/356 (17%), Positives = 116/356 (32%), Gaps = 58/356 (16%)
Query: 76 SSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTL----FGEIPEELGNLAELETLW 130
+Q+LD+ S + + + ++ L +I L L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 131 LQNNFLTGTIHSSIFNL-----SSLSDLDLSHNNLTDV----------QIPNLENLLLWG 175
L++N L + + L L + LT +P L+ L L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 176 NNFSGAIPHFIFNA-----SKLSILELQKNSFFD----LIPNTFGNLINLKRLNLYDNYL 226
N A + +L L+L+ S + + + K L + +N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNIS----GGILEEISNLTNLTAIYLA 282
+ + L C+ L+ S LE + +C ++ + +++ +L + L
Sbjct: 183 NEAG--VRVL-----CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 283 GNKLNGS-----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNK 333
NKL P L +L+ L + + + SL EL L+GN+
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Query: 334 LSGS-----IPTCFGNQTSLRILSLDSNKL----ISIIPSTLWNLKDILYLNLSSN 380
L T L L + S S S L + +L L +S+N
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 63/366 (17%), Positives = 108/366 (29%), Gaps = 72/366 (19%)
Query: 53 RVTTLNISGLSLTST----IPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM-----SSLL 103
++ L++ LT + S L L +LQ L LS N + + L
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 104 SIYFNNNTLFGE----IPEELGNLAELETLWLQNNFLTGTIHSSI-----FNLSSLSDLD 154
+ +L + L + + L + NN + + + L L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 155 LSHNNLTDVQI----------PNLENLLLWGNNFSGAIPHFIFNA-----SKLSILELQK 199
L +T +L L L N + S+L L + +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265
Query: 200 NSFFD----LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF 255
+ +LK L+L N L L C+ L + LE
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLL-----CETLLEPGCQLESL 318
Query: 256 SMFNCNISGGILEEISNL----TNLTAIYLAGNKLNGSIPITLCKL-----QKLQLLSFV 306
+ +C+ + S++ L + ++ N+L + LC+ L++L
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378
Query: 307 DNKL--EGPIPYEFCRLAS-------LYELDLSGNKLSGSIPTCFG-----NQTSLRILS 352
D + LA+ L ELDLS N L + L L
Sbjct: 379 DCDVSDSS-----CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433
Query: 353 LDSNKL 358
L
Sbjct: 434 LYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 42/258 (16%), Positives = 81/258 (31%), Gaps = 44/258 (17%)
Query: 53 RVTTLNISGLSLTST----IPSELGNLSSLQTLDLSFNWFSGS-----IPSSIFNMSSLL 103
++ L + +TS + + + +SL+ L L N P + S L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 104 SIYFNNNTL----FGEIPEELGNLAELETLWLQNNFLTGT-----IHSSIFNLSSLSDLD 154
+++ + G++ L L+ L L N L + + L L
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319
Query: 155 LSHNNLTDVQI----------PNLENLLLWGNNFSGAIPHFIFNA-----SKLSILELQK 199
+ + T L L + N A + S L +L L
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379
Query: 200 NSFFD----LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF 255
D + T +L+ L+L +N L + + L + + Q LE
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA--GILQL-----VESVRQPGCLLEQL 432
Query: 256 SMFNCNISGGILEEISNL 273
+++ S + + + L
Sbjct: 433 VLYDIYWSEEMEDRLQAL 450
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 28/144 (19%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL----------------- 449
FG ++ A KVAVK AF + ++MK L
Sbjct: 201 FGEVWMATYNKHTKVAVKTMKPGSMSVEAFLA---EANVMKTLQHDKLVKLHAVVTKEPI 257
Query: 450 --VLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+ E+M GSL L S + + ++ +A + ++ IH DL+ +N
Sbjct: 258 YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAAN 314
Query: 507 VLLGNNMVAHLSDFGMAKLLLKED 530
+L+ ++V ++DFG+A+++ +
Sbjct: 315 ILVSASLVCKIADFGLARVIEDNE 338
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 31/146 (21%)
Query: 409 FGSIYKAR-----IQDGMKVAVKVF-DLQYERAFKSFDVACDMMKKL------------- 449
FG + R G +VAVK ++++ L
Sbjct: 34 FGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICT 93
Query: 450 ---------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
++E++P GSL++ L + +++ Q+L + + ++YL S +H
Sbjct: 94 EDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHR 150
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLL 526
DL NVL+ + + DFG+ K +
Sbjct: 151 DLAARNVLVESEHQVKIGDFGLTKAI 176
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 409 FGSIYKARIQD-GMKVAVKVF--DLQYERAFKSFDVACDMMKKL---------------- 449
+G +Y+ + + VAVK D F +MK++
Sbjct: 233 YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLK---EAAVMKEIKHPNLVQLLGVCTREP 289
Query: 450 ----VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
+ E+M +G+L L N + L + ++ A+EYL IH +L
Sbjct: 290 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAA 346
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
N L+G N + ++DFG+++L+ ++T +
Sbjct: 347 RNCLVGENHLVKVADFGLSRLM--TGDTYTAHAGAK 380
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 33/149 (22%)
Query: 409 FGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
FG +++ + VA+K + + F M++
Sbjct: 28 FGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE 87
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCD 501
++E G L L Y LD+ + ++ AL YL F +H D
Sbjct: 88 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF------VHRD 141
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ NVL+ +N L DFG+++ +
Sbjct: 142 IAARNVLVSSNDCVKLGDFGLSRYMEDST 170
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 30/145 (20%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA---CDMMKKL--------------- 449
F +Y+A + DG+ VA+K + K+ D++K+L
Sbjct: 45 FSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED 104
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIF---QRLNIMIDVALALEYLHFGYSTPIIHCD 501
VLE G L + + + + + ALE++H S ++H D
Sbjct: 105 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRD 161
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLL 526
+K +NV + V L D G+ +
Sbjct: 162 IKPANVFITATGVVKLGDLGLGRFF 186
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 409 FGSIYKARIQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL----------------- 449
FG ++ KVAVK AF + ++MK+L
Sbjct: 26 FGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA---EANLMKQLQHQRLVRLYAVVTQEPI 82
Query: 450 --VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+ EYM +GSL L + + L I + L++ +A + ++ IH DL+ +N
Sbjct: 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAAN 139
Query: 507 VLLGNNMVAHLSDFGMAKLLLKED 530
+L+ + + ++DFG+A+L+ +
Sbjct: 140 ILVSDTLSCKIADFGLARLIEDNE 163
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 39/160 (24%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL--------------------------QYERAFKSFD 440
GFG +++A+ D A+K L +Y A+ +
Sbjct: 17 GFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKN 76
Query: 441 VACDMMKK-------LVLEYMPHGSLEKCL--YSSNYILDIFQRLNIMIDVALALEYLHF 491
+ + ++ +L+ + + + L+I + +A A+E+LH
Sbjct: 77 TTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH- 135
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
S ++H DLK SN+ + V + DFG+ + ++++
Sbjct: 136 --SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE 173
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 28/138 (20%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG + + G KVAVK ++ + ++F +M +L
Sbjct: 206 FGDVMLGDYR-GNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL 262
Query: 450 --VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
V EYM GSL L S +L L +DV A+EYL +H DL N
Sbjct: 263 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARN 319
Query: 507 VLLGNNMVAHLSDFGMAK 524
VL+ + VA +SDFG+ K
Sbjct: 320 VLVSEDNVAKVSDFGLTK 337
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 35/163 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
+G +Y R + + +++A+K + R + + K L
Sbjct: 35 YGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFI 94
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRL--NIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+E +P GSL L S L ++ + L+YLH I+H D+K
Sbjct: 95 KIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGD 151
Query: 506 NVLLGN-NMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
NVL+ + V +SDFG +K L N C GT
Sbjct: 152 NVLINTYSGVLKISDFGTSKRL--------AGINPCTETFTGT 186
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 8e-14
Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 17/262 (6%)
Query: 156 SHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLIN 215
N + V + +L L + L K+ +
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQ 350
Query: 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTN 275
L R L T EL L + + + M + E + +
Sbjct: 351 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410
Query: 276 LTAI--------YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYEL 327
L A+ +K + + +++L L E +L + L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHL 468
Query: 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387
DLS N+L ++P L +L N L ++ + NL + L L +N +
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN-RLQQSA 524
Query: 388 --LEIGNLKVLVGIDLSMNNFS 407
+ + LV ++L N+
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 8e-14
Identities = 51/326 (15%), Positives = 96/326 (29%), Gaps = 30/326 (9%)
Query: 1 LEVDIDNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNIS 60
V + V + L + + W R V ++
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305
Query: 61 GLSLTSTIPSE------LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
SL +P G+ S + + L S+ L +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE--QLFRCELSVEKST- 362
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLW 174
+ EL + EL+ L +N + TI + L L + + ++ +
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 175 GNNFSGAIPHFIFN---ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231
+ S + + + +L L L L+ + L+L N L + P
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP 480
Query: 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG-SI 290
L+ L + LEV + + ++ ++NL L + L N+L +
Sbjct: 481 ALAAL-------------RCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSAA 525
Query: 291 PITLCKLQKLQLLSFVDNKLEGPIPY 316
L +L LL+ N L
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGI 551
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 5e-10
Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 30/196 (15%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-----PSSIFNMSSLLSIYFNNNT 111
+ L L ++ + ++ S + + ++ +
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENL 171
L + L L + L L +N L + ++ L L L S N L + + + NL
Sbjct: 453 L--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VDGVANL 507
Query: 172 LLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRLNLYDNYLTSST 230
+L L L N + L LNL N L
Sbjct: 508 ------------------PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549
Query: 231 PELSFLYS-LSNCKYL 245
L L + +
Sbjct: 550 GIQERLAEMLPSVSSI 565
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 47/168 (27%)
Query: 408 GFGSIYKAR--IQDGMKVAVKV----FDLQYERAFKS----------------FDVACDM 445
G G IY A +G V +K D + + + F+
Sbjct: 92 GLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHT 151
Query: 446 MKK------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
+ +V+EY+ SL++ L + + + ++++ AL YLH S +++
Sbjct: 152 DRHGDPVGYIVMEYVGGQSLKRSKGQK---LPVAEAIAYLLEILPALSYLH---SIGLVY 205
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
DLK N++L + L D G + +YGT
Sbjct: 206 NDLKPENIMLTEEQLK-LIDLGAVSRI-------NS-FGY----LYGT 240
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 46/171 (26%)
Query: 402 SMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDL---------------------- 430
SM + FG + +DG + +K ++
Sbjct: 22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMK 81
Query: 431 -----QYERAFKSFDVACDMMKKLVLEYMPHGSL-EKCLYSSNYILDIFQRLNIMIDVAL 484
QY +F+ +V++Y G L ++ + Q L+ + + L
Sbjct: 82 HPNIVQYRESFEENGSLY-----IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICL 136
Query: 485 ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
AL+++H I+H D+K N+ L + L DFG+A+ +L +
Sbjct: 137 ALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIAR-VLNSTVELAR 183
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 35/153 (22%)
Query: 409 FGSIYKARIQDG-----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG +YK ++ + VA+K Y E+ F +M +
Sbjct: 57 FGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS 116
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIH 499
+ EYM +G+L+K L + + Q + ++ +A ++YL ++ +H
Sbjct: 117 KYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY------VH 170
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
DL N+L+ +N+V +SDFG++++L + ++
Sbjct: 171 RDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA 203
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 34/152 (22%)
Query: 409 FGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
FG + R++ + VA+K + Y E+ + F +M +
Sbjct: 58 FGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK 117
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHC 500
V EYM +GSL+ L + + Q + ++ +A ++YL + +H
Sbjct: 118 SKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGY------VHR 171
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
DL N+L+ +N+V +SDFG+ ++L + ++
Sbjct: 172 DLAARNILINSNLVCKVSDFGLGRVLEDDPEA 203
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 45/161 (27%)
Query: 409 FGSIYKARIQDG----MKVAVKV--FDLQYERAFKSFDVACDMMKKL------------- 449
FGS+ + ++ +KVAVK D +R + F MK
Sbjct: 47 FGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106
Query: 450 ------------VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYL--- 489
+L +M +G L L + + + L M+D+AL +EYL
Sbjct: 107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR 166
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+F +H DL N +L ++M ++DFG++K + D
Sbjct: 167 NF------LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGD 201
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 30/146 (20%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL--QYERAFKSFDVACDMMKKL---------------- 449
F ++YK + ++VA + + F +M+K L
Sbjct: 39 FKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV 98
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V E M G+L K ++ I + + L++LH + PIIH D
Sbjct: 99 KGKKCIVLVTELMTSGTL-KTYLKRFKVMKIKVLRSWCRQILKGLQFLH-TRTPPIIHRD 156
Query: 502 LKLSNVLL-GNNMVAHLSDFGMAKLL 526
LK N+ + G + D G+A L
Sbjct: 157 LKCDNIFITGPTGSVKIGDLGLATLK 182
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 33/149 (22%)
Query: 409 FGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL-------------- 449
FG +++ M VA+K + + F M++
Sbjct: 403 FGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE 462
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL---HFGYSTPIIHCD 501
++E G L L + LD+ + ++ AL YL F +H D
Sbjct: 463 NPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRF------VHRD 516
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ NVL+ +N L DFG+++ +
Sbjct: 517 IAARNVLVSSNDCVKLGDFGLSRYMEDST 545
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
Query: 409 FGSIYKARIQDG-MKVAVKVF--DLQYERAFKSFDVACDMMKKL---------------- 449
+G +Y+ + + VAVK D F +MK++
Sbjct: 26 YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLK---EAAVMKEIKHPNLVQLLGVCTREP 82
Query: 450 ----VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
+ E+M +G+L L N + L + ++ A+EYL IH DL
Sbjct: 83 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAA 139
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
N L+G N + ++DFG+++L+ ++T +
Sbjct: 140 RNCLVGENHLVKVADFGLSRLM--TGDTYTAHAGA 172
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 31/152 (20%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG +++ + Q G + AVK L+ F+ ++ L
Sbjct: 71 FGEVHRMKDKQTGFQCAVKKVRLE---VFRVEEL--VACAGLSSPRIVPLYGAVREGPWV 125
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+E + GSL + + L + L + LEYLH + I+H D+K NV
Sbjct: 126 NIFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNV 181
Query: 508 LLGNN-MVAHLSDFGMAKLLLKEDQSFTQNTN 538
LL ++ A L DFG A L + + T
Sbjct: 182 LLSSDGSRAALCDFGHALCLQPDGLGKSLLTG 213
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 34/156 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG +YKA+ + G A KV + + E + + V +++
Sbjct: 32 FGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKL 91
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+++E+ P G+++ + + L Q + + AL +LH S IIH DLK NV
Sbjct: 92 WIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNV 148
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
L+ L+DFG++ +N T R
Sbjct: 149 LMTLEGDIRLADFGVS----------AKNLKTLQKR 174
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 31/157 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL------QYERAFK------------------SFDVAC 443
+G K R DG + K D + +
Sbjct: 19 YGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT 78
Query: 444 DMMKKLVLEYMPHGSLEKCLYSSNYILDIF---QRLNIMIDVALALEYLH--FGYSTPII 498
+ +V+EY G L + L +M + LAL+ H ++
Sbjct: 79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVL 138
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
H DLK +NV L L DFG+A+ +L D SF +
Sbjct: 139 HRDLKPANVFLDGKQNVKLGDFGLAR-ILNHDTSFAK 174
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 27/155 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKS-----------------FDVACDMMKK-LV 450
G+I + D VAVK + F D + +
Sbjct: 37 EGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIA 96
Query: 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510
+E +L++ + ++ + + ++ L +LH S I+H DLK N+L+
Sbjct: 97 IELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILIS 152
Query: 511 N-----NMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
+ A +SDFG+ K L SF++ +
Sbjct: 153 MPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVP 187
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 33/146 (22%)
Query: 409 FGSIYKARIQD-----GMKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG + G VAVK + + D+++ L
Sbjct: 44 FGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCE 103
Query: 450 ---------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
V+EY+P GSL L + + + Q L + + YLH + IH
Sbjct: 104 DAGAASLQLVMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHR 158
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLL 526
DL NVLL N+ + + DFG+AK +
Sbjct: 159 DLAARNVLLDNDRLVKIGDFGLAKAV 184
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 46/162 (28%)
Query: 409 FGSIYKARIQDG----MKVAVKVF--DLQYERAFKSFDVACDMMKKL------------- 449
FGS+ +A+++ +KVAVK+ D+ + F MK+
Sbjct: 36 FGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSL 95
Query: 450 -------------VLEYMPHGSLEKCLYSS-----NYILDIFQRLNIMIDVALALEYL-- 489
+L +M HG L L +S + L + + M+D+A +EYL
Sbjct: 96 RSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSS 155
Query: 490 -HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+F IH DL N +L +M ++DFG+++ + D
Sbjct: 156 RNF------IHRDLAARNCMLAEDMTVCVADFGLSRKIYSGD 191
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
G +++ + A+K +L+ + S+ + KL
Sbjct: 40 GSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT 99
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+E + L L +D ++R + ++ A+ +H I+H DLK
Sbjct: 100 DQYIYMVMECG-NIDLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 154
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
+N L+ + M+ L DFG+A + + S +++
Sbjct: 155 PANFLIVDGML-KLIDFGIANQMQPDTTSVVKDS 187
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-13
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 43 TGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL 102
TG +C + ++ G SL S +PS G + + LDL + ++ ++ L
Sbjct: 8 TGCTC---NEGKKEVDCQGKSLDS-VPS--GIPADTEKLDLQSTGLATLSDATFRGLTKL 61
Query: 103 LSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLT 161
+ + N L +L EL TL L NN L ++ +F +L+ L L L N L
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 162 DV------QIPNLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLI 214
+ ++ L+ L L N +IP F+ + L L L N + F L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 215 NLKRLNLYDN 224
L+ + L+ N
Sbjct: 180 KLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 195 LELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254
L+LQ L TF L L LNL N L +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-------------------------- 73
Query: 255 FSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGP 313
+S G+ ++ LT L + LA N+L S+P+ + L +L L N+L+
Sbjct: 74 -------LSAGVFDD---LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 314 IPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372
F RL L EL L+ N+L SIP F T+L+ LSL +N+L S+ L +
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 373 LYLNLSSN 380
+ L N
Sbjct: 182 QTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 57/217 (26%), Positives = 82/217 (37%), Gaps = 54/217 (24%)
Query: 165 IP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
IP + E L L + +KL+ L L N L F +L L L L +
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N L S P F +LT L +YL G
Sbjct: 93 NQLA-SLPLGVF-----------------------------------DHLTQLDKLYLGG 116
Query: 284 NKLNGSIPITLC-KLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGNKLSGSIP-T 340
N+L S+P + +L KL+ L N+L+ IP F +L +L L LS N+L S+P
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWN--LKDILYL 375
F L+ ++L N ++ +ILYL
Sbjct: 174 AFDRLGKLQTITLFGN------Q---FDCSRCEILYL 201
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 20/168 (11%)
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNN 177
A+ E L LQ+ L ++ L+ L+ L+L +N L + + L L L N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 178 FSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
+ ++P +F+ ++L L L N L F L LK L L N L S P +F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF- 151
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGN 284
L+N + L S+ L+ ++ G + L L I L GN
Sbjct: 152 DKLTNLQTLSLSTNQLQ-------SVPHGAFD---RLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 301 QLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLI 359
+ L L F L L L+L N+L ++ F + T L L L +N+L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 360 SIIPSTLWNLKDILYLNLSSN 380
S+ +L + L L N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGN 117
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 41/155 (26%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------ 448
F +Y+A I G++VA+K+ D K M+++
Sbjct: 23 SFAGVYRAESIHTGLEVAIKMID-------KKAMYKAGMVQRVQNEVKIHCQLKHPSILE 75
Query: 449 ------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP 496
LVLE +G + + L + + + M + + YLH S
Sbjct: 76 LYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHG 132
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
I+H DL LSN+LL NM ++DFG+A L +
Sbjct: 133 ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE 167
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 35/170 (20%)
Query: 388 LEIGNLKVLVGIDLSMNNFSGFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMM 446
+E+G L++ V L+ GF +Y+A+ + G + A+K E ++ M
Sbjct: 23 VELGELRLRVRRVLAE---GGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFM 79
Query: 447 KKL---------------VLEYMPHGSLEKCL---YSSNYILDIFQR------------L 476
KKL E G E L +++ ++ L
Sbjct: 80 KKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVL 139
Query: 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
I A++++H PIIH DLK+ N+LL N L DFG A +
Sbjct: 140 KIFYQTCRAVQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTI 188
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
G +++ + A+K +L+ + S+ + KL
Sbjct: 68 GSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT 127
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+E + L L +D ++R + ++ A+ +H I+H DLK
Sbjct: 128 DQYIYMVMEC-GNIDLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 182
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
+N L+ + M+ L DFG+A + + S +++
Sbjct: 183 PANFLIVDGML-KLIDFGIANQMQPDTTSVVKDS 215
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 3e-12
Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 68/197 (34%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL--------------------------------QYER 434
+ +A + G V V + R
Sbjct: 90 DPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLR 149
Query: 435 AFKSFDVACD-----------------MMKKLVLEYMPHGSLEKCL------YSSNYILD 471
FD+ D ++ + L +L+ S++ L
Sbjct: 150 FIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLV 209
Query: 472 IFQRLNIMIDVALALEYLH-FGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
RL + + V L LH +G ++H L+ +++L L+ F
Sbjct: 210 HHARLQLTLQVIRLLASLHHYG----LVHTYLRPVDIVLDQRGGVFLTGFEHLVRD---- 261
Query: 531 QSFTQNTNTCHHRIYGT 547
+ + R +
Sbjct: 262 ---GASAVSPIGRGFAP 275
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 39/158 (24%)
Query: 409 FGSIYKARIQDG------MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG +Y+ + +VA+K + R F +MK+
Sbjct: 38 FGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97
Query: 450 --------VLEYMPHGSL---------EKCLYSSNYILDIFQRLNIMIDVALALEYLHFG 492
++E M G L + + + + ++A + YL+
Sbjct: 98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN-- 155
Query: 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ +H DL N ++ + + DFGM + + + D
Sbjct: 156 -ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 192
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
G +++ + A+K +L+ + S+ + KL
Sbjct: 21 GSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT 80
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+E + L L +D ++R + ++ A+ +H I+H DLK
Sbjct: 81 DQYIYMVMEC-GNIDLNSWL-KKKKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLK 135
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
+N L+ + M+ L DFG+A + + S +++
Sbjct: 136 PANFLIVDGML-KLIDFGIANQMQPDTTSVVKDS 168
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 28/138 (20%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------- 449
FG + + G KVAVK ++ + ++F +M +L
Sbjct: 34 FGDVMLGDYR-GNKVAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGL 90
Query: 450 --VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
V EYM GSL L S +L L +DV A+EYL +H DL N
Sbjct: 91 YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARN 147
Query: 507 VLLGNNMVAHLSDFGMAK 524
VL+ + VA +SDFG+ K
Sbjct: 148 VLVSEDNVAKVSDFGLTK 165
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 61/282 (21%), Positives = 97/282 (34%), Gaps = 73/282 (25%)
Query: 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115
T+ +S P + +L + ++ + N + ++
Sbjct: 2 TITVSTPIKQI-FPD--DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 58
Query: 116 IPEELGNLAELETLWLQNNFLT--GTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
I L + L L N L + L++L+ L L+ N L
Sbjct: 59 IQY----LPNVRYLALGGNKLHDISALKE----LTNLTYLILTGNQLQ------------ 98
Query: 174 WGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
++P+ +F+ + L L L +N L F L NL LNL N L S
Sbjct: 99 -------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---- 147
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
L + VF LTNLT + L+ N+L S+P
Sbjct: 148 ------------LPKG-----VF---------------DKLTNLTELDLSYNQLQ-SLPE 174
Query: 293 TLC-KLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGN 332
+ KL +L+ L N+L+ +P F RL SL + L N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 23/220 (10%)
Query: 164 QIP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
L + + + + + + + L N++ L L
Sbjct: 16 DAFAETIKANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALG 71
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
N L +S L L+N YL + L+ ++ G+ + LTNL + L
Sbjct: 72 GNKLHD----ISALKELTNLTYLILTGNQLQ-------SLPNGVFD---KLTNLKELVLV 117
Query: 283 GNKLNGSIPITLC-KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT- 340
N+L S+P + KL L L+ N+L+ F +L +L ELDLS N+L S+P
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
F T L+ L L N+L S+ L + Y+ L N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 36/152 (23%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL------------------------QYERAFKSFDVA 442
FG + KAR D A+K +Y A+
Sbjct: 18 AFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNF 77
Query: 443 CDMMKK--------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYS 494
M + +EY +G+L ++S N + + + AL Y+H S
Sbjct: 78 VKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---S 134
Query: 495 TPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
IIH DLK N+ + + + DFG+AK +
Sbjct: 135 QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNV 166
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
G + AR G +VAVK+ DL+ ++ + +M+
Sbjct: 58 TGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEEL 117
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+++E++ G+L + S L+ Q + V AL YLH + +IH D+K ++
Sbjct: 118 WVLMEFLQGGALTDIV--SQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSI 172
Query: 508 LLGNNMVAHLSDFGMA 523
LL + LSDFG
Sbjct: 173 LLTLDGRVKLSDFGFC 188
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 56/336 (16%), Positives = 98/336 (29%), Gaps = 70/336 (20%)
Query: 72 LGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTLFGE----IPEELGNL 123
+ S ++ L + + S+ + + S+ I + NT+ E + E + +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 124 AELETLWLQNNFL----------TGTIHSSIFNLSSLSDLDLSHNNLTDV---------- 163
+LE + F + ++ L + LS N
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 164 QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
+ LE+L L N I A L L + K + N L+ +
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARA--LQELAVNKKA---------KNAPPLRSIICGR 168
Query: 224 NYLTS-STPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI-----SGGILEEISNLTNLT 277
N L + S E + + + + L M I +LE ++ L
Sbjct: 169 NRLENGSMKEWA--KTFQSHR-------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219
Query: 278 AIYLAGNKL--NGSIPI--TLCKLQKLQLLSFVDNKL--EGPIP----YEFCRLASLYEL 327
+ L N GS + L L+ L D L G + L L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279
Query: 328 DLSGNKLSGSIPTCFG-----NQTSLRILSLDSNKL 358
L N++ L L L+ N+
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
G++Y A + G +VA++ +LQ + + +M++
Sbjct: 33 SGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDEL 92
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+V+EY+ GSL + + +D Q + + ALE+LH S +IH D+K N+
Sbjct: 93 WVVMEYLAGGSLTDVV--TETCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNI 147
Query: 508 LLGNNMVAHLSDFGMA 523
LLG + L+DFG
Sbjct: 148 LLGMDGSVKLTDFGFC 163
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 39/169 (23%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY-------ERAFKS----------------FDVAC 443
G ++ AR ++D VAVKV R F+ +D
Sbjct: 24 GMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLR-FRREAQNAAALNHPAIVAVYDTGE 82
Query: 444 DMMKK-----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
+V+EY+ +L + + + + + + ++ D AL + H II
Sbjct: 83 AETPAGPLPYIVMEYVDGVTL-RDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGII 138
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
H D+K +N+++ + DFG+A+ + S TQ T + GT
Sbjct: 139 HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ-TAA----VIGT 182
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 2e-11
Identities = 91/632 (14%), Positives = 192/632 (30%), Gaps = 171/632 (27%)
Query: 20 HVTDDPTNFLAKNWNTSSTVCHWTGVSCDV-RSYRV-TTLNISGLSLTSTIPSELGNLSS 77
V D P + L + + H V + R+ TL + + +
Sbjct: 37 DVQDMPKSIL-----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEV-- 86
Query: 78 LQTLDLSFNWFSGSI------PSSIFNM-SSLLSIYFNNNTLFGE----IPEELGNLAEL 126
L +++ + I PS + M +N+N +F + + L +
Sbjct: 87 ---LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ- 142
Query: 127 ETLWLQ----NNFLTGTIHS------SIFNLSSLSD-------------LDLSHNNLTDV 163
L + I + L L+L + N +
Sbjct: 143 ---ALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 164 QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
+ L+ LL P++ + S ++L+ +S L+RL
Sbjct: 198 VLEMLQKLLY------QIDPNWTSRSDHSSNIKLRIHSIQA----------ELRRLLKSK 241
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL-----EEISN-LTNLT 277
Y L L N Q++++ F+ +C IL +++++ L+ T
Sbjct: 242 PYENC-------LLVLLNV----QNAKAWNAFN-LSCK----ILLTTRFKQVTDFLSAAT 285
Query: 278 AIYLAGNKLNGSIPITLCKLQKLQLLS-FVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
+++ + + TL + LL ++D + + +P E L + +
Sbjct: 286 TTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRR-LSIIAESIRD 339
Query: 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI----SPLPLEIGN 392
G T ++ +KL +II S+L L+ Y + + + +P +
Sbjct: 340 ------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-- 391
Query: 393 LKVL------VGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM 446
L ++ + + +N + + K + + + + E K + +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISIPSIYLELKVKLENEY-ALH 446
Query: 447 KKLVLEYMPHGSLEK----CLYSSNYILDIFQRLNIMIDVALALEYLHFGY--------- 493
+ +V Y + + Y Y Y H G+
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF------------------YSHIGHHLKNIEHPE 488
Query: 494 ---STPIIHCDL-----KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
++ D K+ + N + + L F + + Y
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQ--QLKFYKPYICDNDPKY 541
Query: 546 GTRRNPQMNFF--SGEMTLKSWVNDLLPISVM 575
N ++F E + S DLL I++M
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 4e-08
Identities = 56/322 (17%), Positives = 102/322 (31%), Gaps = 88/322 (27%)
Query: 9 HLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTI 68
H+S D+ + L K + C + L + L S I
Sbjct: 288 HIS-LDHHSMTLTPDEVKSLLLK----------YLD--CRPQDLPREVLTTNPRRL-SII 333
Query: 69 PSELGNLSSLQTLDLSFNW-------FSGSIPSSIFNMSS-LLSIYFNNNTLFGE---IP 117
+ + L T D NW + I SS+ + F+ ++F IP
Sbjct: 334 AESIRD--GLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 118 EELGNLAELETLWL----------------------QNNFLTGTIHSSIFNLSSLSDLDL 155
L L +W Q T +I S L + +
Sbjct: 389 TIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 156 S-HNNLTD-VQIP---NLENLLL--WGNNFSGAIPHFIFNASKLSILELQKNSFFDL--- 205
+ H ++ D IP + ++L+ F I H + N + L + F D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 206 ---------IPNTFGNLIN-LKRLNLYDNYLTSSTPELS-FLYSLSNCKYLEQSSQSLEV 254
N G+++N L++L Y Y+ + P+ + ++ + +L + ++L +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIEENL-I 560
Query: 255 FSMFNC-------NISGGILEE 269
S + I EE
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEE 582
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 31/152 (20%)
Query: 406 FSGFGSIYKAR-IQDGMKVAVKVFDL-----------QYE-------------RAFKSFD 440
F ++ AR G V V+ +L Q E +F
Sbjct: 37 FEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI 96
Query: 441 VACDMMKKLVLEYMPHGSLEKCL-YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
++ +V +M +GS + + ++ I+ V AL+Y+H +H
Sbjct: 97 ADNELW--VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVH 151
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
+K S++L+ + +LS ++ Q
Sbjct: 152 RSVKASHILISVDGKVYLSGLRSNLSMISHGQ 183
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 50/166 (30%)
Query: 409 FGSIYKARI------QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------- 449
FG ++ A +D M VAVK A K F +++ L
Sbjct: 28 FGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCG 87
Query: 450 -------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVALALE 487
V EYM HG L + + L + Q L+I +A +
Sbjct: 88 DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMV 147
Query: 488 YL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
YL HF +H DL N L+G N++ + DFGM++ + D
Sbjct: 148 YLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 187
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 36/157 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------ 448
+GS+YKA + G VA+K + E + +M++
Sbjct: 41 SYGSVYKAIHKETGQIVAIKQVPV--ESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD 98
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+V+EY GS+ + N L + I+ LEYLH IH D+K N
Sbjct: 99 LWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGN 155
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
+LL A L+DFG+A Q T+T R
Sbjct: 156 ILLNTEGHAKLADFGVA----------GQLTDTMAKR 182
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERA---FKSFDVACDMMKKL--------------- 449
FG++Y AR +++ VA+K +++ ++ ++KL
Sbjct: 67 FGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE 126
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
V+EY GS L L + + L YLH S +IH D+K
Sbjct: 127 HTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKA 182
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLK 528
N+LL + L DFG A ++
Sbjct: 183 GNILLSEPGLVKLGDFGSASIMAP 206
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 43/156 (27%)
Query: 409 FGSIYKARIQDG---MKVAVKVF-DLQYERAFKSFDVACDMMKKL--------------- 449
FG + KARI+ M A+K + + + F +++ KL
Sbjct: 38 FGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH 97
Query: 450 ------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVALALEY 488
+EY PHG+L S+ L Q L+ DVA ++Y
Sbjct: 98 RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDY 157
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
L IH DL N+L+G N VA ++DFG+++
Sbjct: 158 LS---QKQFIHRDLAARNILVGENYVAKIADFGLSR 190
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 41/168 (24%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKS-----------------FDVACDMMKK-LV 450
G++ G VAVK + + + +
Sbjct: 28 SGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIA 87
Query: 451 LEYMPHGSLE------KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
LE +L+ + + + ++++ +A + +LH S IIH DLK
Sbjct: 88 LELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKP 143
Query: 505 SNVLL-------------GNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
N+L+ N+ +SDFG+ K L SF N N
Sbjct: 144 QNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNN 191
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 4e-11
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
++T +YL GN+ +P L + L L+ +N++ F + L L LS N+
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L IP F SLR+LSL N + + +L + +L + +N
Sbjct: 90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 41/141 (29%)
Query: 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLE 253
L L N F L+P N +L ++L +N +++ + +
Sbjct: 35 ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQ--------------------- 72
Query: 254 VFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVDNKLEG 312
FS N+T L + L+ N+L IP L+ L+LLS N +
Sbjct: 73 SFS---------------NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV 116
Query: 313 PIPYE-FCRLASLYELDLSGN 332
+P F L++L L + N
Sbjct: 117 -VPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP 183
++ L+L N T + + N L+ +DLS+N ++ +
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-------------------TLS 70
Query: 184 HFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF--LYSLS 240
+ F N ++L L L N + P TF L +L+ L+L+ N + S PE +F L +LS
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALS 129
Query: 241 N 241
+
Sbjct: 130 H 130
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 165 IP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
IP ++ L L GN F+ +P + N L++++L N L +F N+ L L L
Sbjct: 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N L P +F L + + L + + G +L+ L+ + +
Sbjct: 88 NRLR-CIPPRTF-DGLKSLRLLSLHGNDIS-------VVPEGAFN---DLSALSHLAIGA 135
Query: 284 N 284
N
Sbjct: 136 N 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 6e-05
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
T + S L +P G + L L N F+ +P + N L I +NN +
Sbjct: 13 TVVRCSNKGLKV-LPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-S 67
Query: 115 EIPEEL-GNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDVQIPNLENLL 172
+ + N+ +L TL L N L I F+ L SL L L N+++
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS----------- 115
Query: 173 LWGNNFSGAIPHFIF-NASKLSILELQKN 200
+P F + S LS L + N
Sbjct: 116 --------VVPEGAFNDLSALSHLAIGAN 136
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 45/161 (27%)
Query: 409 FGSIYKARIQDG------MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG +Y+ ++ ++VAVK ++ E+ F + ++ K
Sbjct: 43 FGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 102
Query: 450 --------VLEYMPHGSLEKCLYSS------NYILDIFQRLNIMIDVALALEYL---HFG 492
++E M G L+ L + L + L++ D+A +YL HF
Sbjct: 103 LQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF- 161
Query: 493 YSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKED 530
IH D+ N LL G VA + DFGMA+ + +
Sbjct: 162 -----IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAS 197
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 33/157 (21%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY-------ERAFKS----------------FDVAC 443
G ++Y A +KVA+K + +R F+ DV
Sbjct: 23 GMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR-FEREVHNSSQLSHQNIVSMIDVDE 81
Query: 444 DM-MKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+ LV+EY+ +L S+ L + +N + +++ H I+H D+
Sbjct: 82 EDDCYYLVMEYIEGPTL-SEYIESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDI 137
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
K N+L+ +N + DFG+AK L + S TQ TN
Sbjct: 138 KPQNILIDSNKTLKIFDFGIAKAL--SETSLTQ-TNH 171
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 6e-11
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 450 VLEYMPHGSLEKCLYSSNYI--LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
++ +L+ + + + L+I I +A A+E+LH S ++H DLK SN+
Sbjct: 139 QMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNI 195
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQ----SFTQNTNTCHHRIYGTR 548
+ V + DFG+ + ++++ H GT+
Sbjct: 196 FFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 42/155 (27%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------ 448
GF ++ A K+ KS + +K
Sbjct: 53 GFAKCFEISDADTKEVFAGKIVP-------KSLLLKPHQREKMSMEISIHRSLAHQHVVG 105
Query: 449 ------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP 496
+VLE SL + + + R + + L +YLH
Sbjct: 106 FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLRQIVLGCQYLH---RNR 161
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
+IH DLKL N+ L ++ + DFG+A + + +
Sbjct: 162 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 196
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 42/155 (27%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------ 448
GF ++ A K+ KS + +K
Sbjct: 27 GFAKCFEISDADTKEVFAGKIVP-------KSLLLKPHQREKMSMEISIHRSLAHQHVVG 79
Query: 449 ------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP 496
+VLE SL + + + R + + L +YLH
Sbjct: 80 FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLRQIVLGCQYLH---RNR 135
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
+IH DLKL N+ L ++ + DFG+A + + +
Sbjct: 136 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE 170
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 8e-11
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLWLQNNFLTGTIHSSIF-NLS 148
+ +L +Y N + L L EL L + + L + F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 149 SLSDLDLSHNNLTDVQ-----IPNLENLLLWGNNF 178
LS L+LS N L + +L+ L+L GN
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 148 SSLSDLDLSHNNLTDV-----QIPNLENLLLWGNNFSGAIPHFIF-NASKLSILELQKNS 201
S L + + D NL L + + +L L + K+
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNC 242
+ P+ F L RLNL N L S + + SL
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASL 324
L + NLT +Y+ + + L L +L+ L+ V + L P F L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 325 YELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL 358
L+LS N L SL+ L L N L
Sbjct: 83 SRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-08
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 314 IPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372
+ +L EL + + + LR L++ + L + P +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 373 LYLNLSSNFF--ISPLPLEIGNLKVL 396
LNLS N +S ++ +L+ L
Sbjct: 83 SRLNLSFNALESLSWKTVQGLSLQEL 108
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 5e-06
Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 26/110 (23%)
Query: 53 RVTTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT 111
+T L I + L L L+ L + + + F+
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFH------------- 77
Query: 112 LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT 161
L L L N L ++ SL +L LS N L
Sbjct: 78 ----------FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 9e-11
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 36/152 (23%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD----------LQYE-------------RAFKSFDVAC 443
GFG + + G +VA+K E A + D
Sbjct: 26 GFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQ 85
Query: 444 DMMKK----LVLEYMPHGSLEKCL--YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
+ L +EY G L K L + + L ++ D++ AL YLH I
Sbjct: 86 KLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRI 142
Query: 498 IHCDLKLSNVLL---GNNMVAHLSDFGMAKLL 526
IH DLK N++L ++ + D G AK L
Sbjct: 143 IHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL 174
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 48/167 (28%)
Query: 409 FGSIYKARIQD--------GMKVAVK-VFDLQYERAFKSFDVACDMMKKL---------- 449
FG + A + VAVK + D E+ +MMK +
Sbjct: 48 FGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL 107
Query: 450 -----------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVA 483
++EY G+L + ++ +A
Sbjct: 108 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 167
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+EYL S IH DL NVL+ N V ++DFG+A+ + D
Sbjct: 168 RGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNID 211
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 54/170 (31%)
Query: 409 FGSIYKARIQD--------GMKVAVK-VFDLQYERAFKSFDVACDMMKKL---------- 449
FG + A + VAVK + D E+ +MMK +
Sbjct: 94 FGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL 153
Query: 450 -----------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVA 483
++EY G+L + ++ +A
Sbjct: 154 GACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 213
Query: 484 LALEYL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+EYL IH DL NVL+ N V ++DFG+A+ + D
Sbjct: 214 RGMEYLASQKC------IHRDLAARNVLVTENNVMKIADFGLARDINNID 257
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 66/196 (33%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD--------------------------------LQYER 434
+ +A + G V V + R
Sbjct: 85 DPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLR 144
Query: 435 AFKSFDVA-----------------CDMMKKLVLEYMPHGSLEKCL------YSSNYILD 471
FD+ ++ + L +L+ S++ L
Sbjct: 145 FIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLV 204
Query: 472 IFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531
RL + + V L LH ++H L+ +++L L+ F ++
Sbjct: 205 HHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV---RDGA 258
Query: 532 SFTQNTNTCHHRIYGT 547
+ R +
Sbjct: 259 RVV----SSVSRGFEP 270
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 47/166 (28%)
Query: 409 FGSIYKARIQD------GMKVAVK-VFDLQYERAFKSFDVACDMMKKL------------ 449
FG + +A VAVK + + ++ ++ +
Sbjct: 40 FGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 99
Query: 450 ----------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVAL 484
++E+ G+L L + + VA
Sbjct: 100 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAK 159
Query: 485 ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+E+L S IH DL N+LL V + DFG+A+ + K+
Sbjct: 160 GMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 202
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 59/169 (34%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL----------------------------QYERAFKSF 439
FGS++K DG A+K +Y A+
Sbjct: 24 FGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED 83
Query: 440 DVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIF---QRLNIMIDVALALEYLHFGYSTP 496
D + EY GSL + + I+ F + ++++ V L Y+H S
Sbjct: 84 DHML-----IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMS 135
Query: 497 IIHCDLKLSNVLLGNN-------------------MVAHLSDFGMAKLL 526
++H D+K SN+ + ++ + D G +
Sbjct: 136 LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRI 184
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 33/157 (21%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD-LQYERAFKSFDVACDMMKK----------------- 448
++++ R + G A+KVF+ + + R +++KK
Sbjct: 21 ATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT 80
Query: 449 -----LVLEYMPHGSLEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
L++E+ P GSL L + Y L + L ++ DV + +L I+H +
Sbjct: 81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRN 137
Query: 502 LKLSNVLLG----NNMVAHLSDFGMAKLLLKEDQSFT 534
+K N++ V L+DFG A+ L ++Q +
Sbjct: 138 IKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVS 174
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 42/149 (28%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG++Y AR Q +A+KV K+ + +
Sbjct: 22 FGNVYLAREKQSKFILALKVLF-------KAQLEKAGVEHQLRREVEIQSHLRHPNILRL 74
Query: 449 -----------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
L+LEY P G++ + L + + + ++A AL Y H S +
Sbjct: 75 YGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA-TYITELANALSYCH---SKRV 130
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
IH D+K N+LLG+ ++DFG +
Sbjct: 131 IHRDIKPENLLLGSAGELKIADFGWSVHA 159
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 45/161 (27%)
Query: 409 FGSIYKARIQDG------MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG +Y+ ++ ++VAVK ++ E+ F + ++ K
Sbjct: 84 FGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVS 143
Query: 450 --------VLEYMPHGSLEKCLYSS------NYILDIFQRLNIMIDVALALEYL---HFG 492
+LE M G L+ L + L + L++ D+A +YL HF
Sbjct: 144 LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF- 202
Query: 493 YSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKED 530
IH D+ N LL G VA + DFGMA+ + +
Sbjct: 203 -----IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG 238
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 47/161 (29%)
Query: 409 FGSIYKARIQDGMKVAVKVFD-------LQYERAFKSFDVACDMMKK------------- 448
F I +D A+K ++ + ++
Sbjct: 44 FNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKN 102
Query: 449 -----------------LVLEYMPHGSLEKCLYSSNYILDIFQRL-------NIMIDVAL 484
++ EYM + S+ K + + I+ V
Sbjct: 103 EYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLN 162
Query: 485 ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525
+ Y+H I H D+K SN+L+ N LSDFG ++
Sbjct: 163 SFSYIH--NEKNICHRDVKPSNILMDKNGRVKLSDFGESEY 201
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 49/165 (29%)
Query: 409 FGSIYKARIQDG------MKVAVKVFDLQYERAFKSFDVACDMMKKL------------- 449
FG ++ A + M VAVK E A + F +++ L
Sbjct: 54 FGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT 113
Query: 450 -------VLEYMPHGSL--------------EKCLYSSNYILDIFQRLNIMIDVALALEY 488
V EYM HG L + L + Q L + VA + Y
Sbjct: 114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVY 173
Query: 489 L---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
L HF +H DL N L+G +V + DFGM++ + D
Sbjct: 174 LAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD 212
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 53/157 (33%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+G +YK R ++ G A+KV D+ + + +M+KK
Sbjct: 37 YGQVYKGRHVKTGQLAAIKVMDVTGDE-EEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95
Query: 449 --------LVLEYMPHGSLEKCLYSSNYILDIFQRLN-----------IMIDVALALEYL 489
LV+E+ GS+ D+ + I ++ L +L
Sbjct: 96 PGMDDQLWLVMEFCGAGSV----------TDLIKNTKGNTLKEEWIAYICREILRGLSHL 145
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
H +IH D+K NVLL N L DFG++ L
Sbjct: 146 H---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL 179
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 37/163 (22%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL----------QYE-------------RAFKSFDVACD 444
+ A KVA+K +L E + SF V +
Sbjct: 28 TAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE 87
Query: 445 MMKKLVLEYMPHGSL-------EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
+ LV++ + GS+ + +LD I+ +V LEYLH
Sbjct: 88 LW--LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQ 142
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGM-AKLLLKEDQSFTQNTNT 539
IH D+K N+LLG + ++DFG+ A L D + + T
Sbjct: 143 IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 17/172 (9%), Positives = 33/172 (19%), Gaps = 58/172 (33%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD-------------------------------LQYERA 435
++ R ++ A+KVF R
Sbjct: 74 DRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRL 133
Query: 436 FKSFDVACDMMKK------------------LVLEYM-----PHGSLEKCLYSSNYILDI 472
D + L++ S +Y I
Sbjct: 134 LLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGI 193
Query: 473 FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
+ + L S ++H N+ + + L D
Sbjct: 194 LALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALW 242
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC---DMMKK--------------- 448
++++ R + G A+KVF+ + DV +++KK
Sbjct: 21 ATANVFRGRHKKTGDLFAIKVFNN--ISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE 78
Query: 449 -------LVLEYMPHGSLEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
L++E+ P GSL L + Y L + L ++ DV + +L I+H
Sbjct: 79 TTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVH 135
Query: 500 CDLKLSNVLLG----NNMVAHLSDFGMAKLLLKEDQSFT 534
++K N++ V L+DFG A+ L ++Q +
Sbjct: 136 RNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVS 174
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 50/166 (30%)
Query: 409 FGSIYKARIQD------GMKVAVK-VFDLQYERAFKSFDVACDMMKKL------------ 449
FG + +A +KVAVK + + ++ +M L
Sbjct: 59 FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118
Query: 450 ---------VLEYMPHGSL-------------EKCLYSSNYILDIFQRLNIMIDVALALE 487
+ EY +G L + +N L+ VA +
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMA 178
Query: 488 YL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+L + IH D+ NVLL N VA + DFG+A+ ++ +
Sbjct: 179 FLASKNC------IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS 218
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 36/175 (20%), Positives = 57/175 (32%), Gaps = 59/175 (33%)
Query: 409 FGSIYKARIQDG------MKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG +++AR VAVK+ + F +M +
Sbjct: 60 FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC 119
Query: 450 --------VLEYMPHGSL-----------------------EKCLYSSNYILDIFQRLNI 478
+ EYM +G L + L ++L I
Sbjct: 120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCI 179
Query: 479 MIDVALALEYL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
VA + YL F +H DL N L+G NMV ++DFG+++ + D
Sbjct: 180 ARQVAAGMAYLSERKF------VHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 228
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 59/175 (33%)
Query: 409 FGSIYKARIQDG------MKVAVK-VFDLQYERAFKSFDVACDMMKKL------------ 449
FG + KA VAVK + + + +++K++
Sbjct: 36 FGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC 95
Query: 450 --------VLEYMPHGSL-----------------------EKCLYSSNYILDIFQRLNI 478
++EY +GSL + L + ++
Sbjct: 96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISF 155
Query: 479 MIDVALALEYL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
++ ++YL +H DL N+L+ +SDFG+++ + +ED
Sbjct: 156 AWQISQGMQYLAEMKL------VHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 37/159 (23%)
Query: 408 GFGSIYKARIQD---GMKVAVKVFDLQY-------ERAFKS----------------FDV 441
G G +Y+A D VA+K+ R + D
Sbjct: 46 GMGDVYEAE--DTVRERIVALKLMSETLSSDPVFRTR-MQREARTAGRLQEPHVVPIHDF 102
Query: 442 -ACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
D + + + L L L + + I+ + AL+ H + H
Sbjct: 103 GEIDGQLYVDMRLINGVDLAAML-RRQGPLAPPRAVAIVRQIGSALDAAH---AAGATHR 158
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
D+K N+L+ + A+L DFG+A D+ TQ
Sbjct: 159 DVKPENILVSADDFAYLVDFGIASAT--TDEKLTQ-LGN 194
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 48/167 (28%)
Query: 409 FGSIYKARI------QDGMKVAVK-VFDLQYERAFKSFDVACDMMKKL------------ 449
FG + +A M VAVK + + ++ ++ L
Sbjct: 36 FGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGA 95
Query: 450 ---------VLEYMPHGSL-----------------EKCLYSSNYILDIFQRLNIMIDVA 483
+ EY +G L + LD+ L+ VA
Sbjct: 96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVA 155
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+ +L S IH DL N+LL + + + DFG+A+ + +
Sbjct: 156 KGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 48/167 (28%)
Query: 409 FGSIYKARIQD--------GMKVAVK-VFDLQYERAFKSFDVACDMMKKL---------- 449
FG + A KVAVK + E+ +MMK +
Sbjct: 82 FGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLL 141
Query: 450 -----------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVA 483
++EY G+L ++ L ++ VA
Sbjct: 142 GACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVA 201
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
+EYL S IH DL NVL+ + V ++DFG+A+ + D
Sbjct: 202 RGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 245
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 35/144 (24%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDL-QYERAFKSFDVACDMMKKL----------------- 449
FG ++K + VA+K+ DL + E + ++ +
Sbjct: 35 FGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTK 94
Query: 450 ---VLEYMPHGS----LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
++EY+ GS LE I I+ ++ L+YLH S IH D+
Sbjct: 95 LWIIMEYLGGGSALDLLEPGPLDETQIA------TILREILKGLDYLH---SEKKIHRDI 145
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLL 526
K +NVLL + L+DFG+A L
Sbjct: 146 KAANVLLSEHGEVKLADFGVAGQL 169
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 6e-10
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 46/175 (26%)
Query: 408 GFGSIYKAR------IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------- 448
F +Y+A ++ K +KV F + +K
Sbjct: 77 AFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAH 136
Query: 449 -------LVLEYMPHGSL----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
LV E +G+L + ++ ++ + + +E +H I
Sbjct: 137 LFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEI 193
Query: 498 IHCDLKLSNVLLGNNMVAH-----------LSDFGMAKLL--LKEDQSFTQNTNT 539
IH D+K N +LGN + L D G + + + FT T
Sbjct: 194 IHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCET 248
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 51/167 (30%)
Query: 409 FGSIYKARIQDG------MKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------ 449
FG +YK + VA+K + + F + +L
Sbjct: 22 FGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVV 81
Query: 450 --------VLEYMPHGSL---------------EKCLYSSNYILDIFQRLNIMIDVALAL 486
+ Y HG L + L+ ++++ +A +
Sbjct: 82 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGM 141
Query: 487 EYL---HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
EYL H +H DL NVL+ + + +SD G+ + + D
Sbjct: 142 EYLSSHHV------VHKDLATRNVLVYDKLNVKISDLGLFREVYAAD 182
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 274 TNLTAIYLAGNKLNGSIPIT--LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331
+ T + L N+L I +L L L N+L G P F + + EL L
Sbjct: 29 LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 332 NKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
NK+ I F L+ L+L N++ ++P + +L + LNL+SN
Sbjct: 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 37/172 (21%), Positives = 57/172 (33%), Gaps = 48/172 (27%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
TT++ +G L IP ++ L L+ N +F
Sbjct: 11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFG---------------- 51
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQIPNLENLLL 173
L L L L+ N LT I + F S + +L L N +
Sbjct: 52 -------RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK------------ 91
Query: 174 WGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
I + +F +L L L N ++P +F +L +L LNL N
Sbjct: 92 -------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 165 IP-NLENLLLWGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
IP + LLL N +F L LEL++N + PN F +++ L L
Sbjct: 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
+N + FL L K L + + G E +L +LT++ LA
Sbjct: 87 ENKIK-EISNKMFL-GLHQLKTLNLYDNQIS-------CVMPGSFE---HLNSLTSLNLA 134
Query: 283 GN 284
N
Sbjct: 135 SN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 41/142 (28%)
Query: 194 ILELQKNSFFDLIPN-TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSL 252
L L N + + FG L +L +L L N LT P
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-------------------- 72
Query: 253 EVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI-TLCKLQKLQLLSFVDNKLE 311
F +++ + L NK+ I L +L+ L+ DN++
Sbjct: 73 -AFE---------------GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115
Query: 312 GPIPYE-FCRLASLYELDLSGN 332
+ F L SL L+L+ N
Sbjct: 116 C-VMPGSFEHLNSLTSLNLASN 136
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 54/154 (35%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG++Y AR Q+ +A+KV KS + +
Sbjct: 27 FGNVYLAREKQNKFIMALKVLF-------KSQLEKEGVEHQLRREIEIQSHLRHPNILRM 79
Query: 449 -----------LVLEYMPHGSLEKCLYSSNYILDIFQRLN------IMIDVALALEYLHF 491
L+LE+ P G L K L R + M ++A AL Y H
Sbjct: 80 YNYFHDRKRIYLMLEFAPRGELYKELQKH-------GRFDEQRSATFMEELADALHYCH- 131
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525
+IH D+K N+L+G ++DFG +
Sbjct: 132 --ERKVIHRDIKPENLLMGYKGELKIADFGWSVH 163
|
| >1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
+ ALEYLH IIH DLK N+LL +M ++DFG AK+L E + N+
Sbjct: 139 IVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS 191
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
+ +AL+YL + IIH D+K N+LL + H++DF +A +L +E Q T
Sbjct: 124 LVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT 173
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 53/172 (30%)
Query: 409 FGSIYKARIQDG------MKVAVK-VFDLQYERAFKSFDVACDMMKKL------------ 449
FG + A ++VAVK + + ++ MM +L
Sbjct: 58 FGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGA 117
Query: 450 ---------VLEYMPHGSL----------------------EKCLYSSNYILDIFQRLNI 478
+ EY +G L +L L
Sbjct: 118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCF 177
Query: 479 MIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
VA +E+L +H DL NVL+ + V + DFG+A+ ++ +
Sbjct: 178 AYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 226
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKS------------------------FDVAC 443
F ++YKAR VA+K L + K D
Sbjct: 23 FATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG 82
Query: 444 DMMK-KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
LV ++M LE + ++ +L M+ LEYLH I+H DL
Sbjct: 83 HKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDL 138
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
K +N+LL N V L+DFG+AK ++++T
Sbjct: 139 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQ 172
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 29/142 (20%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFK-----------------------SFDVACD 444
G ++K G+ +A K+ L+ + A + +F +
Sbjct: 46 GGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGE 105
Query: 445 MMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
+ + +E+M GSL++ + + + I V L YL + I+H D+K
Sbjct: 106 I--SICMEHMDGGSLDQ-VLKKAGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKP 160
Query: 505 SNVLLGNNMVAHLSDFGMAKLL 526
SN+L+ + L DFG++ L
Sbjct: 161 SNILVNSRGEIKLCDFGVSGQL 182
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 41/169 (24%), Positives = 57/169 (33%), Gaps = 38/169 (22%)
Query: 165 IP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
IP N + L L N + P + L L L N L F +L L L+L
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N LT VF L +L +++
Sbjct: 98 NQLTVLPS---------------------AVF---------------DRLVHLKELFMCC 121
Query: 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332
NKL +P + +L L L+ N+L+ F RL+SL L GN
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLF 113
TT++ S +P+ G ++ Q L L N + + +F ++ +L +Y +N L
Sbjct: 22 TTVDCRSKRHAS-VPA--GIPTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL- 76
Query: 114 GEIPEEL-GNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDVQIPNLENL 171
G +P + +L +L L L N LT + S++F+ L L +L + N LT
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT---------- 125
Query: 172 LLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
+P I + L+ L L +N + F L +L L+ N
Sbjct: 126 ---------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 3/132 (2%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
TN +YL N++ P L L+ L N+L F L L LDL N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 334 LSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392
L+ +P+ F L+ L + NKL +P + L + +L L N S
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 393 LKVLVGIDLSMN 404
L L L N
Sbjct: 158 LSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 36/168 (21%), Positives = 55/168 (32%), Gaps = 45/168 (26%)
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNN 177
+ L+L +N +T +L +L +L L N L + + L L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 178 FSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
+ +P +F+ L L + N +P L +L L L N L S P +F
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS-IPHGAF- 155
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGN 284
L++LT YL GN
Sbjct: 156 ----------------------------------DRLSSLTHAYLFGN 169
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 34/175 (19%), Positives = 51/175 (29%), Gaps = 62/175 (35%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFD----------------LQYERAFKSFDVACDM------ 445
+G + A D A+KV A
Sbjct: 26 YGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQ 85
Query: 446 ----MKKL----------------------VLEYMPHGSL----EKCLYSSNYILDIFQR 475
+KKL V E + G + S + FQ
Sbjct: 86 EIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQ- 144
Query: 476 LNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530
D+ +EYLH IIH D+K SN+L+G + ++DFG++ D
Sbjct: 145 -----DLIKGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD 191
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 54/166 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA---------CDMMKK---------- 448
+ + + AVK+ D+ +F + +V D+++K
Sbjct: 30 SSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQL 89
Query: 449 -----------LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEY 488
LV + M G L EK S + + + +
Sbjct: 90 KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLE----------VICA 139
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
LH I+H DLK N+LL ++M L+DFG + L +
Sbjct: 140 LH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSC-QLDPGEKLR 181
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 50/166 (30%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERA----------------------------FKSF 439
+G + K R + G +AVK F+
Sbjct: 20 YGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG 79
Query: 440 DVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLN------IMIDVALALEYLHFGY 493
DV + +E M SL+K ++D Q + I + + ALE+LH
Sbjct: 80 DV------WICMELMD-TSLDKFY---KQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL 129
Query: 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
S +IH D+K SNVL+ + DFG++ L ++ +
Sbjct: 130 S--VIHRDVKPSNVLINALGQVKMCDFGISGYL---VDDVAKDIDA 170
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 60/336 (17%)
Query: 54 VTTLNISGLSLTSTIPSELG-----NLSSLQTLDLSFNWFSGSIPSSIFNM-----SSLL 103
VT+L++S +L S EL +S+ +L+LS N + + +++
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 104 SIYFNNNTLFGEIPEELGNL-----AELETLWLQNNFLTGTIHSSIFNL-----SSLSDL 153
S+ + N L + +EL + L L N + S +S++ L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 154 DLSHNNLTDV---------QIPN--LENLLLWGNNFS--GAI---PHFIFNASKLSILEL 197
+L N+L + +L L GNN + + ++ L+L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203
Query: 198 QKNSFFD-----LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSL 252
N L ++ LNL N L + E + K+L Q++
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN-LKLLKDSLKHL----QTV 258
Query: 253 EVFSMFNCNISG----GILEEISNLTNLTAIYLAGNKLNGSIPITL--------CKLQKL 300
+ N+S + N+ + + G +++ S I + K
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318
Query: 301 QLL--SFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334
LL + + + L E + L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 56/370 (15%), Positives = 116/370 (31%), Gaps = 66/370 (17%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-----NMSSLLSIYFNNNT 111
++ ++ + + +LDLS N + +S+ S+ + N+
Sbjct: 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62
Query: 112 LFGEIPEELG-----NLAELETLWLQNNFLTGTIHSSI-----FNLSSLSDLDLSHNNLT 161
L + +EL A + +L L NFL+ + +++ LDL N+ +
Sbjct: 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Query: 162 DVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD-----LIPNTFGNLINL 216
+ + ++ L L+ N LI N+
Sbjct: 123 SKSSSEFKQAFSNLP-------------ASITSLNLRGNDLGIKSSDELIQILAAIPANV 169
Query: 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-----S 271
LNL N L S + L K+L S+ + + E+ S
Sbjct: 170 NSLNLRGNNLASKN--CAEL-----AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222
Query: 272 NLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLAS---- 323
++ ++ L N L+G + + L+ LQ + + ++ + L +
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282
Query: 324 ---LYELDLSGNKLSGSIPTCFGN-----QTSLRILSLDSNKLISI-----IPSTLWNLK 370
+ +D +G ++ S N + SL + LI L
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342
Query: 371 DILYLNLSSN 380
++ +
Sbjct: 343 ELRESIQTCK 352
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYER------------AFKS---------FDVACDMMK 447
+G +YKA+ G VA+K L E K DV
Sbjct: 34 YGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERC 93
Query: 448 -KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV E+M L+K L + L Q + + + + H I+H DLK N
Sbjct: 94 LTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQN 149
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
+L+ ++ L+DFG+A+ +S+T
Sbjct: 150 LLINSDGALKLADFGLARAFGIPVRSYTHE 179
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 46/176 (26%)
Query: 401 LSMNNFS--------GFGSIYKARIQDGMKV-AVKVFDLQYERAFKSFDVACDMMKK--- 448
+ + F GFG ++ +++ K+ A K L +R K M++K
Sbjct: 182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKK--LNKKRLKKRKGYQGAMVEKKIL 239
Query: 449 ----------------------LVLEYMPHGSLEKCLYSSNYILDIF--QRLNIMI-DVA 483
LV+ M G + +Y+ + F R +
Sbjct: 240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIV 299
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
LE+LH II+ DLK NVLL ++ +SD G+A E ++ T
Sbjct: 300 SGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA----VELKAGQTKTKG 348
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 409 FGSIYKARIQDGMKVAVKVFDLQYER------------AFKS---------FDVACDMMK 447
+G +YKA+ G A+K L+ E K +DV +
Sbjct: 15 YGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR 74
Query: 448 -KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV E++ L+K L L+ + ++ + + Y H ++H DLK N
Sbjct: 75 LVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQN 130
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
+L+ ++DFG+A+ + +T
Sbjct: 131 LLINREGELKIADFGLARAFGIPVRKYTHE 160
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-08
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 272 NLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330
LT+LT +YL GNKL S+P + KL L L+ N+L+ F +L L EL L+
Sbjct: 50 ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
Query: 331 GNKLSGSIPT-CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
N+L S+P F T L+ L L N+L S+ L + Y+ L N
Sbjct: 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 25/172 (14%)
Query: 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114
TT+ TS +P+ G + LDL N ++SL +Y N L
Sbjct: 10 TTVECYSQGRTS-VPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDVQIPNLENLLL 173
L L L L N L ++ + +F+ L+ L +L L+ N L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ------------ 113
Query: 174 WGNNFSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
++P +F+ ++L L L +N + F L +L+ + L+DN
Sbjct: 114 -------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNN 177
A+ L L+ N L + L+SL+ L L N L + ++ +L L L N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 178 FSGAIPHFIFNA-SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228
++P+ +F+ ++L L L N L F L LK L LY N L S
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 43/171 (25%), Positives = 57/171 (33%), Gaps = 41/171 (23%)
Query: 165 IP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223
IP L L N+ + L+ L L N L F L +L LNL
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 224 NYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283
N L S VF LT L + L
Sbjct: 86 NQLQSLPN---------------------GVF---------------DKLTQLKELALNT 109
Query: 284 NKLNGSIPITLC-KLQKLQLLSFVDNKLEGPIPYE-FCRLASLYELDLSGN 332
N+L S+P + KL +L+ L N+L+ +P F RL SL + L N
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 31/107 (28%), Positives = 44/107 (41%)
Query: 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333
T + L N L +L L L NKL+ F +L SL L+LS N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 334 LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L F T L+ L+L++N+L S+ L + L L N
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFN-MSSLLSIYFNNNT 111
+T L + G L S L+SL L+LS N S+P+ +F+ ++ L + N N
Sbjct: 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQ 111
Query: 112 LFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158
L +P+ + L +L+ L L N L L+SL + L N
Sbjct: 112 L-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV E+ L+K S N LD + + + L + H S ++H DLK N+L
Sbjct: 78 LVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLL 133
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
+ N L++FG+A+ + ++
Sbjct: 134 INRNGELKLANFGLARAFGIPVRCYSAE 161
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 9e-08
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 26/149 (17%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKS--------------------FDVACDMMK 447
+ ++YK + VA+K L++E D+
Sbjct: 15 YATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKS 74
Query: 448 -KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV EY+ L++ L I+++ + + L Y H ++H DLK N
Sbjct: 75 LTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQN 130
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
+L+ L+DFG+A+ +++
Sbjct: 131 LLINERGELKLADFGLARAKSIPTKTYDN 159
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 122 NLAELETLWLQNNFLT-GTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGN 176
++++ L L N+ G + L L + LT + ++ L+ L L N
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRLNLYDN 224
SG + L+ L L N DL L NLK L+L++
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 272 NLTNLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDN---KLEGPIPYEFCRLASLYEL 327
+++ + L ++ N G + + ++L+ LS ++ + +L L +L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKL 69
Query: 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI-IPSTLWNLKDILYLNLSSN 380
+LS N++SG + +L L+L NK+ + L L+++ L+L +
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 74 NLSSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132
S ++ L L + + G + L + N L L L +L+ L L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELS 72
Query: 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGN 176
+N ++G + +L+ L+LS N + D+ ++ NL++L L+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 320 RLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLS 378
+ + EL L ++ + G + L LS + L SI + L L + L LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
N L + L ++LS N +I
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 250 QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
+ LE S N ++ + + L L + L+ N+++G + + K L L+ NK
Sbjct: 42 EELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 310 LEGP-IPYEFCRLASLYELDLSGN 332
++ +L +L LDL
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL- 112
+ L+ + LTS + L L+ L+ L+LS N SG + +L + + N +
Sbjct: 44 LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Query: 113 -FGEIPEELGNLAELETLWLQNNFLTGTIH---SSIFNLSSLSDLD 154
I E L L L++L L N +T + L L+ LD
Sbjct: 102 DLSTI-EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 39/148 (26%)
Query: 409 FGSIYKAR-IQDGMKVA--------------------------------VKVFDLQYERA 435
FG ++KAR + G KVA V + ++ +A
Sbjct: 30 FGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKA 89
Query: 436 FKSFDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
+ LV ++ H L L + + + +M + L Y+H
Sbjct: 90 SPYNRCKGSIY--LVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RN 143
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMA 523
I+H D+K +NVL+ + V L+DFG+A
Sbjct: 144 KILHRDMKAANVLITRDGVLKLADFGLA 171
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 70 SELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
++ N + LDL I + + +I F++N + + L L+TL
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI-------PNLENLLLWGN 176
+ NN + L L++L L++N+L ++ +L L + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN---KLEGPIPYEFCRLASL 324
+ +N + L G K+ I L + + F DN KL+G F L L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRL 66
Query: 325 YELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI-IPSTLWNLKDILYLNLSSN 380
L ++ N++ L L L +N L+ + L +LK + YL + N
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 25/129 (19%)
Query: 118 EELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNN 177
+ N L L+ + I + L +D S N + + L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLL------ 63
Query: 178 FSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237
+L L + N + L +L L L +N L EL L
Sbjct: 64 ------------RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV----ELGDLD 107
Query: 238 SLSNCKYLE 246
L++ K L
Sbjct: 108 PLASLKSLT 116
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 321 LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
ELDL G K+ I + N++ + L+ + L +++N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74
Query: 381 FFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
L L + L+ N+ G +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDL 106
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 16/122 (13%)
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
N + + L+L + + N L + + + I L+
Sbjct: 17 NAVRDRELDLRGYKIPV----------IEN---LGATLDQFDAIDFSDNEIR--KLDGFP 61
Query: 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR-LASLYELDLS 330
L L + + N++ L L L +N L + L SL L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 331 GN 332
N
Sbjct: 122 RN 123
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 53/296 (17%), Positives = 99/296 (33%), Gaps = 62/296 (20%)
Query: 294 LCKLQKL-QLL--SFVDNKLEGPIPYEFCRLASLYELDLSGNK--LSGSIPTCFGNQTSL 348
LC+ + +LL F + E F + YE+ + ++ F + T
Sbjct: 56 LCERNPIGRLLFREFCATRPELSRCVAFLDGVAEYEVTPDDKRKACGRNLTQNFLSHTGP 115
Query: 349 RILSLDSNKLISIIPSTLWN-------------LKDILYLNLSSNFFISPLPLEIGNLKV 395
++ +L++ L + L + +++ S K
Sbjct: 116 DLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQWKW 175
Query: 396 LVGIDLSMNNFS--------GFGSIYKARIQDGMKV-AVKVFDLQYERAFKSFDVACDMM 446
L ++ N F GFG + +++ K+ A K L+ +R K A +
Sbjct: 176 LERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKK--LEKKRIKKRKGEAMALN 233
Query: 447 KK-------------------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMI- 480
+K LVL M G L+ +Y + F +
Sbjct: 234 EKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIY--HMGQAGFPEARAVFY 291
Query: 481 --DVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
++ LE LH I++ DLK N+LL ++ +SD G+A + +
Sbjct: 292 AAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG 344
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 33/152 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYER-AFKS--------------------FDVACDMM 446
+G ++K R G VA+K F + K +V
Sbjct: 16 YGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV---FR 72
Query: 447 KK----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+K LV EY H ++ L + +I A+ + H IH D+
Sbjct: 73 RKRRLHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDV 128
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
K N+L+ + V L DFG A+LL +
Sbjct: 129 KPENILITKHSVIKLCDFGFARLLTGPSDYYD 160
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 32/268 (11%)
Query: 146 NLSSLSDLDLSHNNLTDVQI--------PNLENLLLWG-NNFSGA-IPHFIFNASKLSIL 195
NL L + ++D+ + +LE L L + F+ + + + K+ L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 196 ELQKNSFFDLIPNTFG----NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQS 251
++++SF + + +L+ LN Y +P+ + + + ++ +S
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK--------DLETIARNCRS 221
Query: 252 LEVFSMFNCNIS--GGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
L + + I G + +NL L + + L +KL L
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281
Query: 310 LEGPIPYEFCRLASLYELDLSG-NKLSGSIPTCFGNQTSLRILSLD---SNKLISIIPST 365
+P F A + +LDL + T +L +L ++ + ++
Sbjct: 282 PNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340
Query: 366 LWNLKDILYLNLSSNFFISPLPLEIGNL 393
LK L + + E G +
Sbjct: 341 CKQLK---RLRIERGADEQGMEDEEGLV 365
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 55/333 (16%), Positives = 106/333 (31%), Gaps = 27/333 (8%)
Query: 74 NLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTL--FGEIPEELGNLAELE 127
+ +SL+ L+ F+ + + N SL+S+ + + + NL E
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249
Query: 128 TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI-----PNLENL-LLWGNNFSGA 181
L + + ++ L L LS+ ++ I + L LL+ +
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309
Query: 182 IPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN 241
I L +LE + + LKRL + + L S
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369
Query: 242 CKYLEQSSQSLEVFSMFNCNISGGILEEIS----NLTNLTAIYLAG---------NKLNG 288
L Q Q LE +++ +I+ LE I NL + + L +
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429
Query: 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTS 347
S+ I KL++ + + Y ++ + L S + +
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489
Query: 348 LRILSLDSNKLISI-IPSTLWNLKDILYLNLSS 379
L+ L + I + + L + YL +
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 50/155 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFD-----------LQYER------------AFKSFDVACD 444
+G + + + + AVK+ ++ + DV +
Sbjct: 18 YGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN 77
Query: 445 MMKK---LVLEYMPHGSLEKCLYSSNYILD----------IFQRLNIMIDVALALEYLHF 491
K+ +V+EY G E + + + + F +L ID LEYLH
Sbjct: 78 EEKQKMYMVMEYCVCGMQE--ML--DSVPEKRFPVCQAHGYFCQL---ID---GLEYLH- 126
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
S I+H D+K N+LL +S G+A+ L
Sbjct: 127 --SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 33/153 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYER-AFKS--------------------FDVACDMM 446
+G + K R G VA+K F + K +V
Sbjct: 38 YGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEV---CK 94
Query: 447 KK----LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
KK LV E++ H ++ L LD + + + + H S IIH D+
Sbjct: 95 KKKRWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDI 150
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ 535
K N+L+ + V L DFG A+ L + +
Sbjct: 151 KPENILVSQSGVVKLCDFGFARTLAAPGEVYDD 183
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+VLE +K + Y+ ++ + ++ ++ + ++Y+H S I+H DLK +N L
Sbjct: 134 VVLEIADS-DFKKLFRTPVYLTELHIKT-LLYNLLVGVKYVH---SAGILHRDLKPANCL 188
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMT 561
+ + + DFG+A+ + + +Q + P ++T
Sbjct: 189 VNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLT 241
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 34/147 (23%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQ-----YERAFKSFDV---ACD----------MMKK- 448
+GS+ K G +AVK ++ DV + D + ++
Sbjct: 35 YGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG 94
Query: 449 ---LVLEYMPHGSLEKCLYSSNYILDIFQRLN------IMIDVALALEYLHFGYSTPIIH 499
+ +E M S +K + + I + AL +L IIH
Sbjct: 95 DCWICMELMS-TSFDKFY--KYVYSVLDDVIPEEILGKITLATVKALNHLKENLK--IIH 149
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLL 526
D+K SN+LL + L DFG++ L
Sbjct: 150 RDIKPSNILLDRSGNIKLCDFGISGQL 176
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 43/330 (13%), Positives = 101/330 (30%), Gaps = 45/330 (13%)
Query: 74 NLSSLQTLDLSFNWFSGSIPSSIF----NMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
+ + P+++ + S+ + F +P+ G
Sbjct: 39 EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG------- 91
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI-------PNLENLLLWG-NNFS-G 180
++ I + + + L ++ L +TD + N + L+L FS
Sbjct: 92 -----YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146
Query: 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI----NLKRLNLYDNYLTSSTPELSFL 236
+ L L+L+++ D+ + + +L LN+ L+
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC---------LASE 197
Query: 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG------SI 290
S S + L +L+ + + + L + G +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257
Query: 291 PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLR 349
+ L ++L+ LS + + +P + + L L+LS + + L+
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317
Query: 350 ILSLDSNKLISIIPSTLWNLKDILYLNLSS 379
L + + + KD+ L +
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 43/337 (12%), Positives = 107/337 (31%), Gaps = 38/337 (11%)
Query: 55 TTLNISGLSLTST---IPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFN--- 108
+LNIS L+ + + + +L++L L+ + + + L +
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246
Query: 109 ---NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQI 165
++ + L EL L + + + + S L+ L+LS+ + +
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 166 -------PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT--------- 209
P L+ L + + L L + + F + PN
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366
Query: 210 -FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ---SSQSLEVFSMFNCNIS-G 264
L+ + + +T++ + + N + + +
Sbjct: 367 VSMGCPKLESVLYFCRQMTNA----ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422
Query: 265 GILEEISNLTNLTAIYLAGNKLNGSIP--ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322
G + + +L + L+G + T K ++ ++F + G + +
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCD 481
Query: 323 SLYELDLSGNKLSG-SIPTCFGNQTSLRILSLDSNKL 358
SL +L++ ++ ++R L + S +
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN 512
E L + + VA +E+L S IH DL N+LL
Sbjct: 173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEK 229
Query: 513 MVAHLSDFGMAKLLLKED 530
V + DFG+A+ + K+
Sbjct: 230 NVVKICDFGLARDIYKDP 247
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 34/142 (23%)
Query: 408 GFGSIYKARIQD---GMKVAVKVFDLQYERA------FKS----------------FDVA 442
++A D +VA+ D Q S DV
Sbjct: 43 PPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVV 100
Query: 443 -CDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
+V E++ GSL++ +S + M +A A + H +
Sbjct: 101 HTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSI 154
Query: 502 LKLSNVLLGNNMVAHLSDFGMA 523
S V + + L+
Sbjct: 155 DHPSRVRVSIDGDVVLAYPATM 176
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 8e-07
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 60 SGLSLTSTIPSELG--NLSSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEI 116
SG+ + I EL ++++ L L + G I +L + N L
Sbjct: 6 SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--IS 63
Query: 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLE 169
L L +L+ L L N + G + L +L+ L+LS N L D+ + L+
Sbjct: 64 VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
Query: 170 NLLLWGN 176
+L L+
Sbjct: 124 SLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 272 NLTNLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDN---KLEGPIPYEFCRLASLYEL 327
+ + L K N G I + L+ LS ++ + +L L +L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKL 76
Query: 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI-IPSTLWNLKDILYLNLSSN 380
+LS N++ G + +L L+L NKL I L L+ + L+L +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 320 RLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLS 378
A++ EL L K + G I +L LSL + LIS+ S L L + L LS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 379 SNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
N L + L L ++LS N ++
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 32/126 (25%), Positives = 42/126 (33%), Gaps = 25/126 (19%)
Query: 122 NLAELETLWLQNNFLT-GTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSG 180
A + L L N G I +L L L + L + NL L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKL--------- 70
Query: 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
KL LEL +N F + L NL LNL N L ++S L L
Sbjct: 71 ---------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK----DISTLEPLK 117
Query: 241 NCKYLE 246
+ L+
Sbjct: 118 KLECLK 123
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 250 QSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
+LE S+ N + + + L L + L+ N++ G + + KL L L+ NK
Sbjct: 49 VNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
Query: 310 LEGPIPYE-FCRLASLYELDLSGN 332
L+ E +L L LDL
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 31/155 (20%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKS--------------------FDVACDMMK 447
+ ++YK G+ VA+K L E S +DV K
Sbjct: 18 YATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENK 77
Query: 448 -KLVLEYMPHGSLEKCLYSSNYI-----LDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
LV E+M + L+K + S L++ + L + H I+H D
Sbjct: 78 LTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRD 133
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
LK N+L+ L DFG+A+ +F+
Sbjct: 134 LKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSE 168
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVA--------LALEYLHFGYSTPIIHC 500
+V+EYMP G L +++ ++ A LAL+ +H S IH
Sbjct: 146 MVMEYMPGGDL----------VNLMSNYDVPEKWARFYTAEVVLALDAIH---SMGFIHR 192
Query: 501 DLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
D+K N+LL + L+DFG K ++ +T
Sbjct: 193 DVKPDNMLLDKSGHLKLADFGTCM---KMNKEGMVRCDT 228
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFTQNTNT 539
+++AL +LH II+ DLK N++L + H L+DFG+ K + + T+T
Sbjct: 130 ISMALGHLH---QKGIIYRDLKPENIMLNHQ--GHVKLTDFGLCKESIHDGTV----THT 180
|
| >3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFTQNTNT 539
+ALAL++LH S II+ DLK N+LL H L+DFG++K + ++ +
Sbjct: 135 LALALDHLH---SLGIIYRDLKPENILLDEE--GHIKLTDFGLSKESIDHEKK----AYS 185
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 27/98 (27%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMID----------VALALEYLHFGYSTPII 498
LV++Y G L L + + + + +A++ +H +
Sbjct: 151 LVMDYYVGGDL----------LTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYV 197
Query: 499 HCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFT 534
H D+K N+L+ N H L+DFG L+++ +
Sbjct: 198 HRDIKPDNILMDMN--GHIRLADFGSCLKLMEDGTVQS 233
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 67/189 (35%)
Query: 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD---LDLSHN 158
+ ++ + ++ L L + L L N + I +LS + + L L N
Sbjct: 27 KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRN 80
Query: 159 NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKR 218
+ I NL+ + L+
Sbjct: 81 LIKK--IENLDAV-----------------------------------------ADTLEE 97
Query: 219 LNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG-GILEEISNLTNLT 277
L + N + SLS + L +L V M N I+ G +++++ L L
Sbjct: 98 LWISYNQIA----------SLSGIEKLV----NLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 278 AIYLAGNKL 286
+ LAGN L
Sbjct: 144 DLLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 63/196 (32%)
Query: 118 EELGNLAELETLWLQNNF--LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWG 175
+ E E + L + + +++ L + L LS N I + +L
Sbjct: 17 RKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTN-----NIEKISSL---- 66
Query: 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
+ NL+ L+L N +
Sbjct: 67 -----------------------------------SGMENLRILSLGRNLIKK------- 84
Query: 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI-TL 294
+ N L+ + +LE + I+ L I L NL +Y++ NK+ I L
Sbjct: 85 ---IEN---LDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136
Query: 295 CKLQKLQLLSFVDNKL 310
L KL+ L N L
Sbjct: 137 AALDKLEDLLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131
L + +L+ L L N I + +L ++ + N + + L L L++
Sbjct: 66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYM 122
Query: 132 QNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTDVQIPNLE 169
NN +T + L L DL L+ N L + N
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPIT----LCKLQKLQLLSFVDNKLEGPIPYEFCRL 321
+ +S L + L+ N I L ++ L++LS N ++ I
Sbjct: 40 MDATLSTLKACKHLALSTNN------IEKISSLSGMENLRILSLGRNLIKK-IENLDAVA 92
Query: 322 ASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIP-STLWNLKDILYLNLSSN 380
+L EL +S N+++ S+ + +LR+L + +NK+ + L L + L L+ N
Sbjct: 93 DTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 285 KLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN 344
+ + K++ L + +E + L + L LS N + I +
Sbjct: 16 ERKSVVATEAEKVE----LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSG 68
Query: 345 QTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404
+LRILSL N I I + + L +S N I+ L I L L + +S N
Sbjct: 69 MENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNN 125
Query: 405 NFSGFGSIYK 414
+ +G I K
Sbjct: 126 KITNWGEIDK 135
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 33/154 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYE------------------------RAFKSFDVAC 443
G ++K R + G +AVK + F +F
Sbjct: 38 CGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT 97
Query: 444 DMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
D+ + +E M EK + + + + AL YL + +IH D+K
Sbjct: 98 DV--FIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG--VIHRDVK 152
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
SN+LL L DFG++ L ++
Sbjct: 153 PSNILLDERGQIKLCDFGISGRL---VDDKAKDR 183
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 34/104 (32%)
Query: 449 LVLEYMPHGSL-----------EK--CLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
V+EY G L E+ Y + ++ ALEYLH S
Sbjct: 82 FVMEYANGGELFFHLSRERVFTEERARFYGA--------------EIVSALEYLH---SR 124
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+++ D+KL N++L + ++DFG+ K + + + T
Sbjct: 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT----MKT 164
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFT 534
+ LALE+LH II+ D+KL N+LL +N H L+DFG++K + ++
Sbjct: 168 IVLALEHLH---KLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFVADETERA 217
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+ AL+YLH + +++ DLKL N++L + ++DFG+ KE T
Sbjct: 257 IVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLC----KEGIKDGATMKT 308
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 53/165 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC--------DMMKK----------- 448
+ + G + AVK+ ++ ER ++++
Sbjct: 107 SSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166
Query: 449 ----------LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYL 489
LV + M G L EK S + + + + A+ +L
Sbjct: 167 DSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLE----------AVSFL 216
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
H + I+H DLK N+LL +NM LSDFG + L+ +
Sbjct: 217 H---ANNIVHRDLKPENILLDDNMQIRLSDFGFSC-HLEPGEKLR 257
|
| >2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 449 LVLEYMPHGSLEKCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
LV E++ L+K + +S + + + + + L + H S ++H DLK N+
Sbjct: 79 LVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNL 134
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536
L+ L+DFG+A+ +++T
Sbjct: 135 LINTEGAIKLADFGLARAFGVPVRTYTHE 163
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFTQNTNT 539
+A AL YLH S I++ DLK N+LL + H L+DFG+ K ++ + + T+T
Sbjct: 148 IASALGYLH---SLNIVYRDLKPENILLDSQ--GHIVLTDFGLCKENIEHNST----TST 198
|
| >3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 44/171 (25%)
Query: 401 LSMNNFS--------GFGSIYKARIQDGMKV-AVKVFDLQYERAFKSFDVACDMMKK--- 448
L+MN+FS GFG +Y R D K+ A+K L +R + ++
Sbjct: 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKC--LDKKRIKMKQGETLALNERIML 243
Query: 449 -------------------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVA 483
+L+ M G L L + R ++
Sbjct: 244 SLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA-EII 302
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT 534
L LE++H + +++ DLK +N+LL + +SD G+A + +
Sbjct: 303 LGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC-DFSKKKPHA 349
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
LV E++ L L + L ++M L++LH + I+H DLK N+
Sbjct: 96 LVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENI 151
Query: 508 LLGNNMVAHLSDFGMAK 524
L+ + L+DFG+A+
Sbjct: 152 LVTSGGTVKLADFGLAR 168
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 45/162 (27%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFD---LQYERAFKSFDVA-----CDMMKK----------- 448
G + A + KVA+++ A ++ +++KK
Sbjct: 148 CGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKN 207
Query: 449 --------LVLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
+VLE M G L F + LA++YLH
Sbjct: 208 FFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFY------QMLLAVQYLH---EN 258
Query: 496 PIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
IIH DLK NVLL + + + ++DFG +K+L + T
Sbjct: 259 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRT 300
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 34/104 (32%)
Query: 449 LVLEYMPHGSL-------------EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
V+EY+ G L Y++ ++A+ L +L S
Sbjct: 419 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAA--------------EIAIGLFFLQ---SK 461
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
II+ DLKL NV+L + ++DFGM KE+ T T
Sbjct: 462 GIIYRDLKLDNVMLDSEGHIKIADFGMC----KENIWDGVTTKT 501
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
++LAL YLH II+ DLKL NVLL + L+D+GM K L+ + T+T
Sbjct: 119 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT----TST 169
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 54/164 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC-----DMMKKL------------- 449
F + + + G + A + + + + D + + L
Sbjct: 24 FSVVRRCVKVLAGQEYAAMIIN---TKKLSARDHQKLEREARICRLLKHPNIVRLHDSIS 80
Query: 450 -------VLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGY 493
+ + + G L + YS S+ I I + A+ + H
Sbjct: 81 EEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILE----------AVLHCH--- 127
Query: 494 STPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
++H +LK N+LL + L+DFG+A + E Q++
Sbjct: 128 QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWF 171
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
+ AL +LH II+ DLKL NVLL + L+DFGM K + + T T
Sbjct: 133 IISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVT----TAT 183
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
++LAL YLH II+ DLKL NVLL + L+D+GM K L+ + T+T
Sbjct: 162 ISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT----TST 212
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 46/162 (28%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFD---LQYERAFKSFDVA-----CDMMKK----------- 448
G + A + KVA+K+ A ++ +++KK
Sbjct: 23 CGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKN 82
Query: 449 --------LVLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
+VLE M G L F + LA++YLH
Sbjct: 83 FFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFY------QMLLAVQYLH---EN 133
Query: 496 PIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
IIH DLK NVLL + + + ++DFG +K +L E
Sbjct: 134 GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK-ILGETSLMR 174
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 34/104 (32%)
Query: 449 LVLEYMPHGSL-----------EK--CLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
V+EY+ G L E Y++ ++A+ L +L S
Sbjct: 98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAA--------------EIAIGLFFLQ---SK 140
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
II+ DLKL NV+L + ++DFGM K + + + T T
Sbjct: 141 GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT----TKT 180
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 36/146 (24%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKLVLE--YM-----PH-GSL 459
FG ++ A + +V VK E+ + + + K+ LE + + +
Sbjct: 37 FGFVWTAVDKEKNKEVVVKFIK--KEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKV 94
Query: 460 EKCLYSSNYI----------LDIF------QRLN------IMIDVALALEYLHFGYSTPI 497
+ + LD+F RL+ I + A+ YL I
Sbjct: 95 LDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLR---LKDI 151
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMA 523
IH D+K N+++ + L DFG A
Sbjct: 152 IHRDIKDENIVIAEDFTIKLIDFGSA 177
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 34/168 (20%), Positives = 51/168 (30%), Gaps = 55/168 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC-----DMMKKL------------- 449
F + + + G + AVK+ D+ + + L
Sbjct: 37 FSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS 96
Query: 450 -------VLEYMPHGSL---------EKCLYS----SNYILDIFQRLNIMIDVALALEYL 489
V E+M L +YS S+Y+ I + AL Y
Sbjct: 97 SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILE----------ALRYC 146
Query: 490 HFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFT 534
H IIH D+K VLL N+ L FG+A L +
Sbjct: 147 H---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAG 191
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAK 524
V LALEYLH S II+ DLK N+LL N H ++DFG AK
Sbjct: 115 VCLALEYLH---SKDIIYRDLKPENILLDKN--GHIKITDFGFAK 154
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 27/98 (27%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMID----------VALALEYLHFGYSTPII 498
LV+EY G L L + + I + +A++ +H +
Sbjct: 138 LVMEYYVGGDL----------LTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYV 184
Query: 499 HCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFT 534
H D+K N+LL H L+DFG L + +
Sbjct: 185 HRDIKPDNILLDRC--GHIRLADFGSCLKLRADGTVRS 220
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 56/163 (34%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+ + M+ AVK+ D + ++ +++
Sbjct: 35 YSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEI---LLRYGQHPNIITLKDVYDDGKYV 91
Query: 449 -LVLEYMPHGSLEKCLYSSNYILDIFQRL------------NIMIDVALALEYLHFGYST 495
+V E M G L ++ ++ + +EYLH +
Sbjct: 92 YVVTELMKGGEL-------------LDKILRQKFFSEREASAVLFTITKTVEYLH---AQ 135
Query: 496 PIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLKEDQSFT 534
++H DLK SN+L GN + DFG AK L E+
Sbjct: 136 GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLM 178
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH--LSDFGMAKLLLKEDQSFTQNTNT 539
+ L L++LH S I++ DLKL N+LL + H ++DFGM K + D TNT
Sbjct: 127 IILGLQFLH---SKGIVYRDLKLDNILLDKD--GHIKIADFGMCKENMLGDAK----TNT 177
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 47/164 (28%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG +++ G K + Y + +M +
Sbjct: 64 FGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEM 123
Query: 449 -LVLEYMPHGSL------EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
L+LE++ G L E S NY+ + L+++H I
Sbjct: 124 VLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE----------GLKHMH---EHSI 170
Query: 498 IHCDLKLSNVLLGNNMVAHL--SDFGMAKLLLKEDQSFTQNTNT 539
+H D+K N++ + + DFG+A L D+ T T
Sbjct: 171 VHLDIKPENIMCETKKASSVKIIDFGLAT-KLNPDEIVKVTTAT 213
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 449 LVLEYMPHGSLEKCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
LV E++ L L + ++M + L++LH S ++H DLK N+
Sbjct: 96 LVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNI 151
Query: 508 LLGNNMVAHLSDFGMAK 524
L+ ++ L+DFG+A+
Sbjct: 152 LVTSSGQIKLADFGLAR 168
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 36/169 (21%), Positives = 53/169 (31%), Gaps = 57/169 (33%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQ-----YERAFKSFDVACDMMKKL------------- 449
+G + A VAVK+ D++ E K + K L
Sbjct: 20 YGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICI----NKMLNHENVVKFYGHRR 75
Query: 450 -------VLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALALEYLHF 491
LEY G L + I F +L + + YLH
Sbjct: 76 EGNIQYLFLEYCSGGEL------FDRIEPDIGMPEPDAQRFFHQL---MA---GVVYLH- 122
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
I H D+K N+LL +SDFG+A + ++ N C
Sbjct: 123 --GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK-MC 168
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 48/159 (30%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
F ++ + G A+K S + ++KK
Sbjct: 22 FSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHY 81
Query: 449 -LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
LV++ + G L E+ +Y+ S I + A++YLH I+
Sbjct: 82 YLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLS----------AVKYLH---ENGIV 128
Query: 499 HCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
H DLK N+L N ++DFG++K+ ++ +
Sbjct: 129 HRDLKPENLLYLTPEENSKIMITDFGLSKME--QNGIMS 165
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 42/156 (26%)
Query: 408 GFGSIYKA-RIQDGMKVAVKVF--------DLQYERAF----KSFDVACDMMKKLVLEY- 453
GFG IY A K A V L E F D +++ L+Y
Sbjct: 49 GFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYL 108
Query: 454 -MPH----GSLEKCLYSSNYIL---------DIFQR---------LNIMIDVALALEYLH 490
+P G E S +++ I + L + I + LEY+H
Sbjct: 109 GIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIH 168
Query: 491 FGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAK 524
+H D+K +N+LLG N +L+D+G++
Sbjct: 169 ---ENEYVHGDIKAANLLLGYKNPDQVYLADYGLSY 201
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 37/164 (22%)
Query: 409 FGSIYKAR---IQDGMKVAVKVF-----------------DLQYERAFKSFDVACDMMKK 448
+G +YKA+ +D A+K +L++ V +
Sbjct: 34 YGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADR 93
Query: 449 ---LVLEYMPH-------GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
L+ +Y H L +++ + + YLH + ++
Sbjct: 94 KVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVL 150
Query: 499 HCDLKLSNVLLGNNMVAH----LSDFGMAKLLLKEDQSFTQNTN 538
H DLK +N+L+ ++D G A+L +
Sbjct: 151 HRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP 194
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 482 VALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524
+ L EYLH S +I+ DLK N+L+ ++DFG AK
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAK 189
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 38/140 (27%)
Query: 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLE 253
LEL+ N L F L L +L+L N + S
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD---------------------G 70
Query: 254 VFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFVDNKLEG 312
VF LT LT +YL NKL S+P + KL +L+ L+ N+L+
Sbjct: 71 VF---------------DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS 114
Query: 313 PIPYEFCRLASLYELDLSGN 332
F RL SL ++ L N
Sbjct: 115 VPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 124 AELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDV------QIPNLENLLLWGN 176
+ L L++N L ++ +F+ L+ L+ L LS N + + ++ L L L N
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 177 NFSGAIPHFIF-NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
++P+ +F ++L L L N + F L +L+++ L+ N
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 301 QLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILSLDSNKLI 359
L NKL+ F +L L +L LS N++ S+P F T L IL L NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89
Query: 360 SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404
S+ L + L L +N S L L I L N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 39/156 (25%)
Query: 409 FGSIYKARIQD-GMKVAVK-VF----------------------------DLQYERAFKS 438
FG++ + + GM VA+K V Y +
Sbjct: 36 FGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95
Query: 439 FDVACDMMKKLVLEYMP---HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
D+ +V+EY+P H I ++ + + ++ LH S
Sbjct: 96 RR---DIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKV-FLFQLIRSIGCLH-LPSV 150
Query: 496 PIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLLLKED 530
+ H D+K NVL+ + L DFG AK L +
Sbjct: 151 NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSE 186
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 49/165 (29%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQ-----YERAF---------------KSFDV-ACDMM 446
+G + A VAVK+ D++ E K + +
Sbjct: 20 YGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNI 79
Query: 447 KKLVLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALALEYLHFGYST 495
+ L LEY G L + I F +L + + YLH
Sbjct: 80 QYLFLEYCSGGEL------FDRIEPDIGMPEPDAQRFFHQL---MA---GVVYLH---GI 124
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC 540
I H D+K N+LL +SDFG+A + ++ N C
Sbjct: 125 GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK-MC 168
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 31/143 (21%)
Query: 408 GFGSIYKAR-IQDGMKVAVKV-------FDLQYERAFKSFDVACDMMKK----------- 448
FG + + + VA+K+ L E F + D + +
Sbjct: 21 NFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYN 80
Query: 449 -LVLEYMPHG-SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+VLE + G SLE + + L I I + +EY+H S +I+ D+K N
Sbjct: 81 AMVLELL--GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPEN 135
Query: 507 VLLG-----NNMVAHLSDFGMAK 524
L+G V H+ DF +AK
Sbjct: 136 FLIGRPGNKTQQVIHIIDFALAK 158
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-05
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 19/172 (11%)
Query: 20 HVTDDPTNFLAKNWNTSSTVCHWTGVSCD-VRSYRVTTLNISGLSLTSTIPSELG--NLS 76
D A + + +S + +L I L ++ ++ +L
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219
Query: 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLS---------IYFNNNTLFGEIPEELGN---LA 124
+L+ L L + L S + + + E L
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279
Query: 125 ELETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
+LET+ + LT + + + L +++ +N L+D L+ L
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 52/185 (28%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF--NMSSL--LSIYFN-NNT 111
LN + T+ + +L++L++ S+ I ++ +L L +Y +
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233
Query: 112 LFGEIPEEL------GNLAELETLWLQNNFLTGTIHSSIFN---LSSLSDLDLSHNNLTD 162
F L+ L + + + L L +D+S LTD
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293
Query: 163 VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
GA L+ + + +LK +N+
Sbjct: 294 ----------------EGA----------------------RLLLDHVDKIKHLKFINMK 315
Query: 223 DNYLT 227
NYL+
Sbjct: 316 YNYLS 320
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHL--SDFGMAKLLLKEDQSFT 534
NIM + AL YLH + I H D+K N L N + DFG++K K +
Sbjct: 172 NIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228
Query: 535 QNTNT 539
T
Sbjct: 229 YGMTT 233
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 31/151 (20%)
Query: 409 FGSIYKARIQD-GMKVAVK-VF-DLQYE-------RAFK---------SFDVACDMMKK- 448
FG +Y+A++ D G VA+K V D +++ R F + + +
Sbjct: 67 FGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126
Query: 449 ---LVLEYMP---HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
LVL+Y+P + + + I+ +L M + +L Y+H S I H D+
Sbjct: 127 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKL-YMYQLFRSLAYIH---SFGICHRDI 182
Query: 503 KLSNVLL-GNNMVAHLSDFGMAKLLLKEDQS 532
K N+LL + V L DFG AK L++ + +
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPN 213
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 56/163 (34%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
F K + AVK+ +R + +K
Sbjct: 24 FSICRKCVHKKSNQAFAVKIIS---KRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLH 80
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRL------------NIMIDVALALEYLHFGYS 494
LV+E + G L F+R+ IM + A+ ++H
Sbjct: 81 TFLVMELLNGGEL-------------FERIKKKKHFSETEASYIMRKLVSAVSHMH---D 124
Query: 495 TPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
++H DLK N+L + N+ + DFG A+L ++Q
Sbjct: 125 VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLK 167
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 33/156 (21%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYER------------AFKSF---------DVACDMM 446
+G +YKA VA+K L++E K V
Sbjct: 47 YGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH 106
Query: 447 K-KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+ L+ EY + L+K + N + + + + + + + H S +H DLK
Sbjct: 107 RLHLIFEYAEN-DLKKYM-DKNPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQ 161
Query: 506 NVLLGNNMVAH-----LSDFGMAKLLLKEDQSFTQN 536
N+LL + + + DFG+A+ + FT
Sbjct: 162 NLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHE 197
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 55/164 (33%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA-----CDMMKK-------------- 448
F + + G++ A K+ + + + D + +K
Sbjct: 42 FSVVRRCVHKTTGLEFAAKIIN---TKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ 98
Query: 449 ------LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGY 493
LV + + G L + YS S+ I I + ++ Y H
Sbjct: 99 EESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILE----------SIAYCH--- 145
Query: 494 STPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFT 534
S I+H +LK N+LL L+DFG+A + + +++
Sbjct: 146 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI-EVNDSEAWH 188
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 449 LVLEYMP---HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+++EY+P H L+ + S I + + + A+ ++H S I H D+K
Sbjct: 115 VIMEYVPDTLHKVLKSFIRSGRSIPMNLISI-YIYQLFRAVGFIH---SLGICHRDIKPQ 170
Query: 506 NVLL-GNNMVAHLSDFGMAKLLLKED 530
N+L+ + L DFG AK L+ +
Sbjct: 171 NLLVNSKDNTLKLCDFGSAKKLIPSE 196
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 49/157 (31%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC--------DMMKK---------- 448
GFGS+Y + D + VA+K + +R ++ ++KK
Sbjct: 55 GFGSVYSGIRVSDNLPVAIKHVE--KDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIR 112
Query: 449 ------------LVLEYMPHGSLEKCLYSSNYILDIFQRLN------IMIDVALALEYLH 490
L+LE P + L+ ++I + L V A+ + H
Sbjct: 113 LLDWFERPDSFVLILER-PEPVQD--LF--DFITE-RGALQEELARSFFWQVLEAVRHCH 166
Query: 491 FGYSTPIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLL 526
+ ++H D+K N+L+ N L DFG LL
Sbjct: 167 ---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALL 200
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 47/164 (28%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG ++K G+K+A K+ + + + +M +
Sbjct: 102 FGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDI 161
Query: 449 -LVLEYMPHGSL------EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
LV+EY+ G L E + ++ I + + ++H Y I
Sbjct: 162 VLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICE----------GIRHMHQMY---I 208
Query: 498 IHCDLKLSNVLLGNNMVAHL--SDFGMAKLLLKEDQSFTQNTNT 539
+H DLK N+L N + DFG+A+ K + N T
Sbjct: 209 LHLDLKPENILCVNRDAKQIKIIDFGLAR-RYKPREKLKVNFGT 251
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSL 348
IP Q+L L +N++ P F L +L +L + NKL+ +IPT F T L
Sbjct: 31 IPTDK---QRLWLN---NNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83
Query: 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
L L+ N L SI NLK + ++ L +N
Sbjct: 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 64/157 (40%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG + G KVAVK+ + + + D++ K
Sbjct: 24 FGKVKIGEHQLTGHKVAVKILN-------RQKIRSLDVVGKIKREIQNLKLFRHPHIIKL 76
Query: 449 -----------LVLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALAL 486
+V+EY+ G L +YI +FQ++ + A+
Sbjct: 77 YQVISTPTDFFMVMEYVSGGEL------FDYICKHGRVEEMEARRLFQQI---LS---AV 124
Query: 487 EYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMA 523
+Y H ++H DLK NVLL +M A ++DFG++
Sbjct: 125 DYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLS 158
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 290 IPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSL 348
IP T Q L L DN++ P F RL L LDL N+L+ +P F T L
Sbjct: 28 IPTTT---QVLYLY---DNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQL 80
Query: 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380
LSL+ N+L SI NLK + ++ L +N
Sbjct: 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 55/153 (35%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA-----CDMMKKL------------ 449
F + AR I G +VA+K+ D + + +MK L
Sbjct: 27 NFAKVKLARHILTGREVAIKIID---KTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI 83
Query: 450 --------VLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALALEYLH 490
++EY G + +Y++ F+++ A++Y H
Sbjct: 84 ETEKTLYLIMEYASGGEV------FDYLVAHGRMKEKEARSKFRQI------VSAVQYCH 131
Query: 491 FGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMA 523
I+H DLK N+LL +M ++DFG +
Sbjct: 132 ---QKRIVHRDLKAENLLLDADMNIKIADFGFS 161
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 41/163 (25%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA--CDMMKKL--------------- 449
+G + R ++ A+K+ + + ++K L
Sbjct: 49 AYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDK 108
Query: 450 -----VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
V+E G L + ++ I + V + YLH I+H
Sbjct: 109 RNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIK------QVLSGVTYLH---KHNIVH 159
Query: 500 CDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
DLK N+LL + + + + DFG++ + + + + T
Sbjct: 160 RDLKPENLLLESKEKDALIKIVDFGLSA-VFENQKKMKERLGT 201
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 48/155 (30%)
Query: 409 FGSIYKARIQDGMKVAVK-----------------------VFDLQYERAFKSFDVACDM 445
FG +++A++ + +VA+K V DL+ F S D
Sbjct: 53 FGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKA--FFYSNGDKKDE 110
Query: 446 MK-KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVAL----------ALEYLHFGYS 494
+ LVLEY+P + +Y + +L + + L +L Y+H S
Sbjct: 111 VFLNLVLEYVP-----ETVYR---ASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---S 159
Query: 495 TPIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLLLK 528
I H D+K N+LL + V L DFG AK+L+
Sbjct: 160 IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA 194
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 45/159 (28%)
Query: 408 GFGSIYKAR------IQDGMKVAVKVF-----DLQYERAF------KSFDVACDMMKKLV 450
GFG IY A + VKV L E F +KL
Sbjct: 47 GFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLK 106
Query: 451 LEYMPH----GSLEKCLYSSNYIL---------DIFQR----------LNIMIDVALALE 487
+P G +K S +++ I++ L + + + LE
Sbjct: 107 YLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILE 166
Query: 488 YLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAK 524
Y+H +H D+K SN+LL N +L D+G+A
Sbjct: 167 YIH---EHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAY 202
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 5e-05
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 12/143 (8%)
Query: 389 EIGNLKVLVGI-DLSMNNFSGFGSIYKARIQDG-----MKVAVKVFDLQYERAFKSFDVA 442
EI K L + N GF + G + A ++ A D
Sbjct: 73 EIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFF 132
Query: 443 CDMMKKLVLEYMPHG-SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
D +VLE+ G LE+ + + +I+ + +L H D
Sbjct: 133 KDDQLFIVLEFEFGGIDLEQMRTK---LSSLATAKSILHQLTASLAVAEASLR--FEHRD 187
Query: 502 LKLSNVLLGNNMVAHLSDFGMAK 524
L NVLL + L K
Sbjct: 188 LHWGNVLLKKTSLKKLHYTLNGK 210
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+VLE L+K + ++ + + I+ ++ L ++H + IIH DLK +N L
Sbjct: 107 IVLEIADS-DLKKLFKTPIFLTEEHIKT-ILYNLLLGENFIH---ESGIIHRDLKPANCL 161
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMT 561
L + + DFG+A+ + + ++TN + P ++T
Sbjct: 162 LNQDCSVKVCDFGLARTI-----NSEKDTNIVNDLEENEEPGPHNKNLKKQLT 209
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 55/164 (33%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA-----CDMMKK-------------- 448
F + + G++ A K+ + + + D + +K
Sbjct: 19 FSVVRRCVHKTTGLEFAAKIIN---TKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ 75
Query: 449 ------LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGY 493
LV + + G L + YS S+ I I + ++ Y H
Sbjct: 76 EESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILE----------SIAYCH--- 122
Query: 494 STPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFT 534
S I+H +LK N+LL L+DFG+A + + +++
Sbjct: 123 SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI-EVNDSEAWH 165
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 64/159 (40%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
FG + + G KVAVK+ + + + D++ K
Sbjct: 29 FGKVKVGKHELTGHKVAVKILN-------RQKIRSLDVVGKIRREIQNLKLFRHPHIIKL 81
Query: 449 -----------LVLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALAL 486
+V+EY+ G L +YI +FQ++ + +
Sbjct: 82 YQVISTPSDIFMVMEYVSGGEL------FDYICKNGRLDEKESRRLFQQI---LS---GV 129
Query: 487 EYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525
+Y H ++H DLK NVLL +M A ++DFG++ +
Sbjct: 130 DYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNM 165
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 29/141 (20%)
Query: 408 GFGSIYKAR-IQDGMKVAVKV-------FDLQYERAF-------------KSFDVACDMM 446
FG IY I G +VA+K+ L E +
Sbjct: 21 SFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGA-EGDY 79
Query: 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+V+E + SLE + + L + + +EY+H S IH D+K N
Sbjct: 80 NVMVMELLGP-SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDN 135
Query: 507 VLLG---NNMVAHLSDFGMAK 524
L+G + ++ DFG+AK
Sbjct: 136 FLMGLGKKGNLVYIIDFGLAK 156
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 51/159 (32%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------KLVLEYM 454
GFG+++ + D ++VA+KV ++ + + V
Sbjct: 43 GFGTVFAGHRLTDRLQVAIKVIP-------RNRVLGWSPLSDSVTCPLEVALLWKVGAGG 95
Query: 455 PHGSLEKCLY-----SSNYIL---------DIF------QRL------NIMIDVALALEY 488
H + + L ++L D+F L V A+++
Sbjct: 96 GHPGVIR-LLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQH 154
Query: 489 LHFGYSTPIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLL 526
H S ++H D+K N+L+ A L DFG LL
Sbjct: 155 CH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALL 190
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 42/164 (25%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD---LQYERAFKSFDVACDMMKKL-------------- 449
FG + + G + AVKV ++ + +S ++K+L
Sbjct: 38 SFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED 97
Query: 450 ------VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
V E G L + +S I ++ V + Y+H I+
Sbjct: 98 KGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQ------VLSGITYMH---KNKIV 148
Query: 499 HCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
H DLK N+LL + + + DFG++ + + T
Sbjct: 149 HRDLKPENLLLESKSKDANIRIIDFGLST-HFEASKKMKDKIGT 191
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 477 NIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKE 529
IM + A++YLH S I H D+K N+L + N + L+DFG AK E
Sbjct: 121 EIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE 173
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 41/163 (25%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA--CDMMKKL--------------- 449
FG + K + + AVKV + + + + +++KKL
Sbjct: 34 SFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS 93
Query: 450 -----VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
V E G L ++ +S + I + V + Y+H I+H
Sbjct: 94 SSFYIVGELYTGGELFDEIIKRKRFSEHDAARI------IKQVFSGITYMH---KHNIVH 144
Query: 500 CDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQNTNT 539
DLK N+LL + + + DFG++ +++ T
Sbjct: 145 RDLKPENILLESKEKDCDIKIIDFGLST-CFQQNTKMKDRIGT 186
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/150 (23%), Positives = 48/150 (32%), Gaps = 48/150 (32%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFD--------LQYE-RAFKSFD----------VACDMMKK 448
FG R VAVK + +Q E +S +
Sbjct: 33 FGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLA 92
Query: 449 LVLEYMPHGSLEKCLYSSNYILD-----------IFQRLNIMIDVALALEYLHFGYSTPI 497
+++EY G L I + FQ+L + + Y H S I
Sbjct: 93 IIMEYASGGEL------YERICNAGRFSEDEARFFFQQL---LS---GVSYCH---SMQI 137
Query: 498 IHCDLKLSNVLLGNNMVAHL--SDFGMAKL 525
H DLKL N LL + L DFG +K
Sbjct: 138 CHRDLKLENTLLDGSPAPRLKICDFGYSKS 167
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV E M L + ++ ++ M + L L LH ++H DL N+L
Sbjct: 111 LVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNIL 166
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQ 531
L +N + DF +A+ +
Sbjct: 167 LADNNDITICDFNLAREDTADAN 189
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 50/168 (29%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVAC-----DMMKK-------------- 448
F + + G + A K +R A +++
Sbjct: 42 FAVVRQCISKSTGQEYAAKFLK---KRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY 98
Query: 449 -------LVLEYMPHGSL-EKCLYSSNYILDIFQRL------NIMIDVALALEYLHFGYS 494
L+LEY G + C + ++ + + ++ + + YLH
Sbjct: 99 ENTSEIILILEYAAGGEIFSLC------LPELAEMVSENDVIRLIKQILEGVYYLHQNN- 151
Query: 495 TPIIHCDLKLSNVLLGNNMVAH---LSDFGMAKLLLKEDQSFTQNTNT 539
I+H DLK N+LL + + DFGM++ + + T
Sbjct: 152 --IVHLDLKPQNILLSSIYPLGDIKIVDFGMSR-KIGHACELREIMGT 196
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 49/161 (30%)
Query: 408 GFGSIYKAR---------IQDGMKVAVKV---------FDLQYERAFKSFDVACDMMKK- 448
G +Y+A K ++K+ ++RA K V
Sbjct: 54 NQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYS 113
Query: 449 ---------------------LVLEYMPHG-SLEKCL-YSSNYILDIFQRLNIMIDVALA 485
LVL + G SL+ L S ++L L + + A
Sbjct: 114 TPLLAIPTCMGFGVHQDKYRFLVLPSL--GRSLQSALDVSPKHVLSERSVLQVACRLLDA 171
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAK 524
LE+LH +H ++ N+ + + L+ +G A
Sbjct: 172 LEFLH---ENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAF 209
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 51/162 (31%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAF----------------KSFDVACDMMKK--- 448
G + + + K A+K+ +A + DV ++
Sbjct: 75 NGKVLQIFNKRTQEKFALKMLQ-DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 133
Query: 449 --LVLEYMPHGSLEKCLYSSNYILD-IFQRLN----------IMIDVALALEYLHFGYST 495
+V+E + G L I R + IM + A++YLH S
Sbjct: 134 LLIVMECLDGGEL----------FSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SI 180
Query: 496 PIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
I H D+K N+L + N + L+DFG AK S T
Sbjct: 181 NIAHRDVKPENLLYTSKRPNAILKLTDFGFAK-ETTSHNSLT 221
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 47/161 (29%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA-----CDMMKKL------------- 449
FG + K + + AVKV + + + K+ D + +++KKL
Sbjct: 35 FGEVLKCKDRITQQEYAVKVIN---KASAKNKDTSTILREVELLKKLDHPNIMKLFEILE 91
Query: 450 -------VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
V E G L ++ +S + I + V + Y+H I
Sbjct: 92 DSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIK------QVFSGITYMH---KHNI 142
Query: 498 IHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQ 535
+H DLK N+LL + + + DFG++ +++
Sbjct: 143 VHRDLKPENILLESKEKDCDIKIIDFGLST-CFQQNTKMKD 182
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 62/158 (39%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA--CDMMKK----------------- 448
G + + + G K A+K+ S D +
Sbjct: 42 NGKVLECFHRRTGQKCALKLLY-------DSPKARQEVDHHWQASGGPHIVCILDVYENM 94
Query: 449 --------LVLEYMPHGSLEKCLYSSNYILD-IFQRLN----------IMIDVALALEYL 489
+++E M G L I +R + IM D+ A+++L
Sbjct: 95 HHGKRCLLIIMECMEGGEL----------FSRIQERGDQAFTEREAAEIMRDIGTAIQFL 144
Query: 490 HFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAK 524
H S I H D+K N+L + + V L+DFG AK
Sbjct: 145 H---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 31/164 (18%), Positives = 48/164 (29%), Gaps = 47/164 (28%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG +++ G A K +E ++ M L
Sbjct: 170 FGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEM 229
Query: 450 --VLEYMPHGSL------EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPI 497
+ E+M G L E S Y+ + + L ++H
Sbjct: 230 VMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK----------GLCHMH---ENNY 276
Query: 498 IHCDLKLSNVLLGNNMVAHL--SDFGMAKLLLKEDQSFTQNTNT 539
+H DLK N++ L DFG+ L QS T T
Sbjct: 277 VHLDLKPENIMFTTKRSNELKLIDFGLTA-HLDPKQSVKVTTGT 319
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 54/176 (30%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKK------------------- 448
+ + + AVK+ + Q +M+ +
Sbjct: 26 HARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDR 85
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRL------------NIMIDVALALEYLHFGYS 494
LV E M GS+ + ++ DVA AL++LH +
Sbjct: 86 FYLVFEKMRGGSI-------------LSHIHKRRHFNELEASVVVQDVASALDFLH---N 129
Query: 495 TPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGT 547
I H DLK N+L + DF + +K + + + G+
Sbjct: 130 KGIAHRDLKPENILCEHPNQVSPVKICDFDLGS-GIKLNGDCSPISTPELLTPCGS 184
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 39/156 (25%)
Query: 409 FGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
+G + A ++ A K + F ++MK L
Sbjct: 22 WGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDI 81
Query: 450 --VLEYMPHGSL-----EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
V+E G L K ++ + I + DV A+ Y H + H DL
Sbjct: 82 YLVMELCTGGELFERVVHKRVFRESDAARIMK------DVLSAVAYCH---KLNVAHRDL 132
Query: 503 KLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQ 535
K N L + L DFG+A K +
Sbjct: 133 KPENFLFLTDSPDSPLKLIDFGLAA-RFKPGKMMRT 167
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 29/142 (20%)
Query: 408 GFGSIYKAR-IQDGMKVAVKV-------FDLQYERAFKSFDVAC------------DMMK 447
FG I++ + + +VA+K L+ E C +
Sbjct: 22 SFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHN 81
Query: 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
LV++ + SLE L + + ++ +H +++ D+K N
Sbjct: 82 VLVIDLLGP-SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNF 137
Query: 508 LLG-----NNMVAHLSDFGMAK 524
L+G N + ++ DFGM K
Sbjct: 138 LIGRPNSKNANMIYVVDFGMVK 159
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 46/287 (16%)
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLS--------SLSDLDLSHNNLTDVQIPNLENLLL 173
LA E+LW + +H + + ++++ L
Sbjct: 41 RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL 100
Query: 174 WGNNFS-GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD--------- 223
+ + + SKL L L+ D I NT NL RLNL
Sbjct: 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 224 NYLTSSTPELSFLYSLSNCKYL---------EQSSQSLEVFSMFNC--NISGGILEEIS- 271
L SS L L +LS C S+++ ++ N+ L +
Sbjct: 161 QTLLSSCSRLDEL-NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219
Query: 272 NLTNLTAIYLAG-NKLNGSIPITLCKLQKLQLLSFV------DNKLEGPIPYEFCRLASL 324
NL + L+ L +L LQ LS L E + +L
Sbjct: 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----ELGEIPTL 274
Query: 325 YELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKD 371
L + G G++ + +L L ++ + +I T+ N K+
Sbjct: 275 KTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKN 318
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 26/98 (26%)
Query: 449 LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
LVLE + G L EK YS ++ + I + A+ YLH I+H
Sbjct: 125 LVLELVTGGELFDRIVEKGYYSERDAADAVKQILE----------AVAYLH---ENGIVH 171
Query: 500 CDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT 534
DLK N+L + ++DFG++K +++
Sbjct: 172 RDLKPENLLYATPAPDAPLKIADFGLSK-IVEHQVLMK 208
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 37/167 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD-------LQYERAF-------------KSFDVACDMM 446
FG IY IQ +VA+K+ + L YE + F V
Sbjct: 19 SFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGV-EGDY 77
Query: 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV++ + SLE + L + L + + +E++H S +H D+K N
Sbjct: 78 NVLVMDLLGP-SLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDN 133
Query: 507 VLLGNNMVAH---LSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRN 550
L+G A+ + DFG+AK +T+T H Y +N
Sbjct: 134 FLMGLGRRANQVYIIDFGLAKKYR--------DTSTHQHIPYRENKN 172
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 485 ALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525
A+EY H I+H DLK N+LL +N+ ++DFG++ +
Sbjct: 120 AIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNI 157
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 449 LVLEYMP---HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+V+E M ++ L ++Q L +++LH S IIH DLK S
Sbjct: 107 IVMELMDANLCQVIQMELDHERMSYLLYQMLC-------GIKHLH---SAGIIHRDLKPS 156
Query: 506 NVLLGNNMVAHLSDFGMA 523
N+++ ++ + DFG+A
Sbjct: 157 NIVVKSDCTLKILDFGLA 174
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 27/104 (25%)
Query: 449 LVLEYMPHGSL-----EKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
L+LE + G L +K S +++I I + YLH + I H
Sbjct: 92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILD----------GVNYLH---TKKIAH 138
Query: 500 CDLKLSNVLLGNNMVAH----LSDFGMAKLLLKEDQSFTQNTNT 539
DLK N++L + + L DFG+A +++ F T
Sbjct: 139 FDLKPENIMLLDKNIPIPHIKLIDFGLAH-EIEDGVEFKNIFGT 181
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
LV M L + D Q ++ + L+Y+H S IIH DLK SN+
Sbjct: 111 LVTHLMGA-DLNNIVKCQKLTDDHVQ--FLIYQILRGLKYIH---SADIIHRDLKPSNLA 164
Query: 509 LGNNMVAHLSDFGMA 523
+ + + DFG+A
Sbjct: 165 VNEDCELKILDFGLA 179
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.96 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.96 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.91 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.91 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.9 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.9 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.88 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.87 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.86 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.86 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.86 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.85 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.85 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.85 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.85 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.85 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.84 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.84 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.84 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.84 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.84 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.84 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.84 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.84 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.84 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.84 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.84 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.84 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.83 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.83 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.83 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.83 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.83 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.83 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.83 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.83 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.83 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.83 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.82 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.82 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.82 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.82 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.82 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.82 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.82 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.82 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.82 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.82 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.82 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.82 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.81 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.81 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.81 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.81 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.81 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.81 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.81 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.81 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.81 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.81 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.81 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.81 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.81 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.81 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.81 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.81 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.8 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.8 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.8 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.8 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.8 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.8 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.8 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.8 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.8 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.8 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.8 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.79 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.79 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.79 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.79 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.79 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.79 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.79 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.79 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.79 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.79 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.79 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.79 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.79 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.79 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.78 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.78 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.78 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.78 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.78 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.78 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.78 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.77 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.77 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.77 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.77 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.77 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.77 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.77 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.77 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.77 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.76 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.76 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.76 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.76 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.76 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.76 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.76 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.76 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.76 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.76 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.76 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.75 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.75 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.75 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.75 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.75 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.75 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.75 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.75 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.75 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.75 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.75 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.75 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.75 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.75 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.75 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.74 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.74 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.74 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.74 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.74 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.74 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.74 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.74 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.74 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.74 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.74 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.73 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.73 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.73 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.73 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.73 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.73 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.73 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.73 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.73 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.73 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.73 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.73 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.73 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.73 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.73 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.73 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.73 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.73 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.73 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.72 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.72 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.72 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.72 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.72 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.72 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.72 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.72 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.72 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.72 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.72 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.71 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.71 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.71 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.71 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.71 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.71 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.71 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.71 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.71 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.71 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.71 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.71 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.71 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.71 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.71 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.71 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.71 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.7 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.7 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.7 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.7 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.7 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.7 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.69 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.69 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.69 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.69 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.69 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.69 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.69 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.69 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.69 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.68 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.68 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.68 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.67 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.67 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.67 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.67 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.66 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.66 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.66 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.66 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.65 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.65 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.65 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.65 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.64 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.56 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.48 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.47 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.44 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.38 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.38 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.37 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 99.36 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.35 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.25 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.25 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 99.2 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.2 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.19 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.17 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.12 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.08 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.94 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.85 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.84 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 98.72 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.63 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.59 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.48 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.37 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.15 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.69 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 97.56 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.43 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.27 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 97.13 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.61 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.52 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.13 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.92 | |
| 3sg8_A | 304 | APH(2'')-ID; antibiotic resistance enzyme, transfe | 95.75 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 94.74 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 94.24 | |
| 3tdw_A | 306 | Gentamicin resistance protein; kinase, phosphoryl | 92.76 | |
| 3ats_A | 357 | Putative uncharacterized protein; hypothetical pro | 91.5 | |
| 2q83_A | 346 | YTAA protein; 2635576, structural genomics, joint | 87.8 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 83.96 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-50 Score=457.86 Aligned_cols=393 Identities=28% Similarity=0.383 Sum_probs=304.9
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcCccceecCCCCCcEEEEEeCCCCCccc---CC-------------
Q 041082 6 DNNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTST---IP------------- 69 (639)
Q Consensus 6 ~~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~p------------- 69 (639)
....+++||++||+++. ||. .+++ |..+++||.|.||+|+ .++|+.|+|+++.+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp CHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 35678999999999995 887 8888 9988899999999998 47999999999998886 33
Q ss_pred ----------cCCCCCCCCCEEeccCCcCCccCCc--cccCCcccceeeccCCcCCCCCCccc-cCCCCCcEEecccccC
Q 041082 70 ----------SELGNLSSLQTLDLSFNWFSGSIPS--SIFNMSSLLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFL 136 (639)
Q Consensus 70 ----------~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l 136 (639)
..|+.+++|++|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+|++|++
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 5788889999999999999988888 89999999999999999998888876 8899999999999999
Q ss_pred ccccCcc---ccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 137 TGTIHSS---IFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 137 ~~~~p~~---~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
++..|.. +.++++|++|++++|.+++. .+++|++|+|++|++++.+|. +.++++|++|++++|.+++.+|..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH
Confidence 9888876 78899999999999988763 478999999999999998887 899999999999999999999999
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh---------------hhccCccEEEeecCccccccchhhcCCC
Q 041082 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE---------------QSSQSLEVFSMFNCNISGGILEEISNLT 274 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~---------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 274 (639)
|+.+++|++|++++|.+++..+.. .+.+++.+. ....+|+.|++++|.+.+.+|..++.++
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 999999999999999988654432 122222221 1125677777777777777777777777
Q ss_pred CCCEEECCCCCCCcccccc-ccCCcCCcEEEccCCcCCCCCchhhcCCC-C--------------------------CcE
Q 041082 275 NLTAIYLAGNKLNGSIPIT-LCKLQKLQLLSFVDNKLEGPIPYEFCRLA-S--------------------------LYE 326 (639)
Q Consensus 275 ~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~--------------------------L~~ 326 (639)
+|+.|++++|.++|.+|.. +..+++|++|++++|++.+.+|..+..++ + |+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 7777777777777666654 66777777777777777666666555544 4 455
Q ss_pred EECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 327 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 55555555555555666666666666666666666666666666666666666666666666666666666667766666
Q ss_pred CC
Q 041082 407 SG 408 (639)
Q Consensus 407 ~g 408 (639)
++
T Consensus 479 ~~ 480 (768)
T 3rgz_A 479 TG 480 (768)
T ss_dssp CS
T ss_pred cC
Confidence 64
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=425.20 Aligned_cols=407 Identities=19% Similarity=0.254 Sum_probs=324.6
Q ss_pred hHHHHHHHHHhcCCCCCCcc--------cccCCCCCCCCcCc---cceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCC
Q 041082 9 HLSFQVFVLKGHVTDDPTNF--------LAKNWNTSSTVCHW---TGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSS 77 (639)
Q Consensus 9 ~~~~~ll~~k~~~~~~~~~~--------l~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~ 77 (639)
.+..||.+++.++. ++... ..+ |..++++|.| .||+|+.. ++|+.|+|++++++|.+|++|++|++
T Consensus 30 ~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~-W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 30 KDYLALKEIWDALN-GKNWSQQGFGTQPGAN-WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHTT-GGGCCCCC------CC-CCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHcC-CCCcccCCcCCccCCC-CCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCcc
Confidence 57889999999874 33211 224 9988999999 99999865 79999999999999999999999999
Q ss_pred CCEEeccCCc----------------------------------------------------------------------
Q 041082 78 LQTLDLSFNW---------------------------------------------------------------------- 87 (639)
Q Consensus 78 L~~L~Ls~N~---------------------------------------------------------------------- 87 (639)
|++|+|++|.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 9999999884
Q ss_pred --------CCccCCccccCCcccceeeccCCcCCCC-----------------CCcccc--CCCCCcEEecccccCcccc
Q 041082 88 --------FSGSIPSSIFNMSSLLSIYFNNNTLFGE-----------------IPEELG--NLAELETLWLQNNFLTGTI 140 (639)
Q Consensus 88 --------l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~l~~~~ 140 (639)
++| +|.+|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.+.+
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 445 899999999999999999999996 999999 9999999999999999999
Q ss_pred CccccCCCCCCEEecCCCC-CCC--CC-----C------CCccEEEccCCccCccCCc--cccCCCCCcEEEcccCCCcc
Q 041082 141 HSSIFNLSSLSDLDLSHNN-LTD--VQ-----I------PNLENLLLWGNNFSGAIPH--FIFNASKLSILELQKNSFFD 204 (639)
Q Consensus 141 p~~~~~l~~L~~L~Ls~N~-l~~--~~-----l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~ 204 (639)
|..++++++|++|+|++|. +++ ++ + ++|+.|+|++|+++ .+|. .+.++++|+.|++++|.+.|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999999999999999998 886 22 3 89999999999999 8888 89999999999999999998
Q ss_pred cCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC-Ccchhhh---------------ccCccEEEeecCccccccch
Q 041082 205 LIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN-CKYLEQS---------------SQSLEVFSMFNCNISGGILE 268 (639)
Q Consensus 205 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-l~~l~~~---------------~~~l~~l~l~~n~l~~~~~~ 268 (639)
.+| .|+.+++|++|++++|.++..+..+.. +.+ ++.+... ..+|+.|++++|.+.+.+|.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~---l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCG---FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEECCTTSEE---ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred chh-hhCCCCCCCEEECCCCccccccHhhhh---hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 888 889999999999999988855543322 222 2222111 12577888888888887777
Q ss_pred hhc-------CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCC-------CCcEEECCCCcC
Q 041082 269 EIS-------NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA-------SLYELDLSGNKL 334 (639)
Q Consensus 269 ~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-------~L~~L~Ls~N~l 334 (639)
.+. .+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+.... +|+.|++++|.+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 777 677888888888888744334455678888888888888843333333332 788888888888
Q ss_pred cccCCcccc--CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEc------ccCCCCCCCccccccccccccccccCCCC
Q 041082 335 SGSIPTCFG--NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL------SSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 335 ~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
+ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|+|
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8 5677776 88888888888888887 6777888888888888 45777888888888888888888888888
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
+.+... ....++.++++++.
T Consensus 579 ~~ip~~--------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 579 RKVNEK--------ITPNISVLDIKDNP 598 (636)
T ss_dssp CBCCSC--------CCTTCCEEECCSCT
T ss_pred CccCHh--------HhCcCCEEECcCCC
Confidence 543322 11345566665553
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=419.78 Aligned_cols=401 Identities=20% Similarity=0.289 Sum_probs=331.7
Q ss_pred hhHHHHHHHHHhcCCCCCCcccccCCCCCC-----CC--cCc------------cceecCCCCCcEEEEEeCCCCCcccC
Q 041082 8 NHLSFQVFVLKGHVTDDPTNFLAKNWNTSS-----TV--CHW------------TGVSCDVRSYRVTTLNISGLSLTSTI 68 (639)
Q Consensus 8 ~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~ 68 (639)
..+.+||++||.++ .+| + |+.+. +| |.| .||+|+. .++|+.|+|++++++|.+
T Consensus 268 ~~d~~ALl~~k~~l-~~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 268 IKDYKALKAIWEAL-DGK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHT-TGG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred hHHHHHHHHHHHHc-CCC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence 46899999999998 466 4 86543 56 999 9999986 479999999999999999
Q ss_pred CcCCCCCCCCCEEec-cCCcCCcc--------------------------------------------------------
Q 041082 69 PSELGNLSSLQTLDL-SFNWFSGS-------------------------------------------------------- 91 (639)
Q Consensus 69 p~~l~~l~~L~~L~L-s~N~l~~~-------------------------------------------------------- 91 (639)
|++|++|++|++|+| ++|.++|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765444
Q ss_pred --------------------CCccccCCcccceeeccCCcCCC-----------------CCCcccc--CCCCCcEEecc
Q 041082 92 --------------------IPSSIFNMSSLLSIYFNNNTLFG-----------------EIPEELG--NLAELETLWLQ 132 (639)
Q Consensus 92 --------------------~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~L~ 132 (639)
+|..|+++++|+.|+|++|.+++ .+|..++ ++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 88999999999999999999999 4899988 99999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCC-CCC--C------------CCCCccEEEccCCccCccCCc--cccCCCCCcEE
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNN-LTD--V------------QIPNLENLLLWGNNFSGAIPH--FIFNASKLSIL 195 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~--~------------~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L 195 (639)
+|.+.+.+|..|.++++|+.|+|++|. +++ + .+++|+.|+|++|+++ .+|. .+.++++|+.|
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 999999999999999999999999998 876 2 2459999999999999 8888 89999999999
Q ss_pred EcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC-Ccchhhh---------------ccCccEEEeec
Q 041082 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN-CKYLEQS---------------SQSLEVFSMFN 259 (639)
Q Consensus 196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-l~~l~~~---------------~~~l~~l~l~~ 259 (639)
+|++|.+. .+| .|+.+++|+.|+|++|.++..+..+.. +.+ +..|... ..+|+.|++++
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~---l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA---FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCE---ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhh---ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 99999998 667 899999999999999999865544322 222 2222211 12388899999
Q ss_pred Cccccccchh---hc--CCCCCCEEECCCCCCCcccccc-ccCCcCCcEEEccCCcCCCCCchh-hcC-------CCCCc
Q 041082 260 CNISGGILEE---IS--NLTNLTAIYLAGNKLNGSIPIT-LCKLQKLQLLSFVDNKLEGPIPYE-FCR-------LASLY 325 (639)
Q Consensus 260 n~l~~~~~~~---~~--~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~-~~~-------l~~L~ 325 (639)
|.+.+.+|.. +. .+++|+.|++++|.++ .+|.. +..+++|+.|++++|++. .+|.. +.. +++|+
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 9998866532 22 3458999999999998 45554 458899999999999998 44543 332 23899
Q ss_pred EEECCCCcCcccCCcccc--CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEccc------CCCCCCCccccccccccc
Q 041082 326 ELDLSGNKLSGSIPTCFG--NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSS------NFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 326 ~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~p~~~~~l~~L~ 397 (639)
.|+|++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 9999999999 6788887 89999999999999998 688888999999999976 788899999999999999
Q ss_pred cccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 398 GIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 398 ~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
.|++++|+|+.+... ....++.++++++.
T Consensus 810 ~L~Ls~N~L~~Ip~~--------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 810 QLQIGSNDIRKVDEK--------LTPQLYILDIADNP 838 (876)
T ss_dssp EEECCSSCCCBCCSC--------CCSSSCEEECCSCT
T ss_pred EEECCCCCCCccCHh--------hcCCCCEEECCCCC
Confidence 999999999543322 11256677776654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=413.55 Aligned_cols=344 Identities=34% Similarity=0.483 Sum_probs=229.4
Q ss_pred cEEEEEeCCCCCcccCCcCCCCC-CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCcc-ccCCCCCcEEe
Q 041082 53 RVTTLNISGLSLTSTIPSELGNL-SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE-LGNLAELETLW 130 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~ 130 (639)
+++.|++++|.+++.+|..+..+ ++|++|+|++|.+++.+|..|.++++|+.|++++|.+.+.+|.. |..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 45666666666666666666554 67777777777777777777777777777777777776666655 67777777777
Q ss_pred cccccCccccCccccCCC-CCCEEecCCCCCCCC--------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCC
Q 041082 131 LQNNFLTGTIHSSIFNLS-SLSDLDLSHNNLTDV--------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201 (639)
Q Consensus 131 L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~--------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 201 (639)
|++|++++.+|..+.+++ +|++|++++|.+++. .+++|+.|++++|++++.+|..+.++++|+.|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 777777767776666665 677777777766531 14567777777777777777777777888888888888
Q ss_pred CcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEEC
Q 041082 202 FFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281 (639)
Q Consensus 202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L 281 (639)
+++.+|..|+.+++|+.|++++|.+++..|.. +. ...+|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----~~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-----LM-------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-----GG-------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHH-----Hc-------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 77777777777888888888888777654321 11 1235566666666666666666666666666666
Q ss_pred CCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccc-------------------
Q 041082 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCF------------------- 342 (639)
Q Consensus 282 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------- 342 (639)
++|++++.+|.+++.+++|++|++++|++++.+|..++.+++|+.|++++|.++|.+|..+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 6666666666666666666666666666666666666666666666666666655544322
Q ss_pred ---------------------------------------------------cCCCCCCEEeCCCCcCcccchhhhhcCCC
Q 041082 343 ---------------------------------------------------GNQTSLRILSLDSNKLISIIPSTLWNLKD 371 (639)
Q Consensus 343 ---------------------------------------------------~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 371 (639)
..+++|++|++++|++++.+|..+..++.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 22345666666666666666666666666
Q ss_pred CcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 372 ILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 372 L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
|+.|++++|+++|.+|..++.++.|+.||+++|+++|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 6666666666666666666666666666666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=345.04 Aligned_cols=291 Identities=31% Similarity=0.479 Sum_probs=209.7
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcC--ccceecCCCC--CcEEEEEeCCCCCcc--cCCcCCCCCCCCCE
Q 041082 7 NNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCH--WTGVSCDVRS--YRVTTLNISGLSLTS--TIPSELGNLSSLQT 80 (639)
Q Consensus 7 ~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~p~~l~~l~~L~~ 80 (639)
...+++||++||+++ .||. .+++ |..+++||. |.||+|+... .+|+.|+|+++.+++ .+|..|+++++|++
T Consensus 4 ~~~~~~aL~~~k~~~-~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 4 NPQDKQALLQIKKDL-GNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CHHHHHHHHHHHHHT-TCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CHHHHHHHHHHHHhc-CCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 356889999999998 4776 6777 988889998 9999998654 689999999999999 89999999999999
Q ss_pred EeccC-CcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 81 LDLSF-NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 81 L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
|+|++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999999999999999999999999999998899888887766666666555
Q ss_pred CCCCCCCCccEEEccCCccCccCCccccCCC-CCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNAS-KLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 160 l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
++ +.+|..++.++ +|+.|++++|.+.+.+|..|+.++ |++|++++|.+++
T Consensus 161 l~------------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~---------- 211 (313)
T 1ogq_A 161 IS------------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG---------- 211 (313)
T ss_dssp CE------------------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE----------
T ss_pred cc------------------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC----------
Confidence 44 45566666665 666666666666666665555554 5555555444332
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 318 (639)
..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|
T Consensus 212 --------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 212 --------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 2333444555555555555555544443 4445555555555555555555555
Q ss_pred cCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041082 319 CRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 357 (639)
..+++|+.|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555555555555543 445555555555554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=365.57 Aligned_cols=361 Identities=18% Similarity=0.190 Sum_probs=237.6
Q ss_pred CCCCCCCcC--ccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 33 WNTSSTVCH--WTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 33 w~~~~~~c~--w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
|....+.|. +..+.|... +..++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence 434444443 445777653 246899999999999988999999999999999999999999999999999
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWG 175 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~ 175 (639)
|++|++++|.+.+..|..|+++++|++|+|++|++++..|..+.++++|++|+|++|.++++. +++|+.|++++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 999999999999999999999999999999999999887888999999999999999998752 57899999999
Q ss_pred CccCccCCccccCCCCCc--EEEcccCCCcccCccccCCCCC--------------------------------------
Q 041082 176 NNFSGAIPHFIFNASKLS--ILELQKNSFFDLIPNTFGNLIN-------------------------------------- 215 (639)
Q Consensus 176 N~l~~~~p~~~~~l~~L~--~L~L~~N~l~~~~p~~~~~l~~-------------------------------------- 215 (639)
|++++..|..+..+++|+ .|++++|.+.+..|..|.. ..
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 999988888888888888 8888888888877765543 23
Q ss_pred --------------CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEEC
Q 041082 216 --------------LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281 (639)
Q Consensus 216 --------------L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L 281 (639)
|+.|++++|.+++.++.. +. ...+|+.|++++|.++ .+|..+..+++|++|++
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~--~~----------~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNT--FH----------CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT--TT----------TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEEC
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHH--hc----------cccCCCEEeccCCccC-CCChhhcccccCCEEEC
Confidence 334444444443332210 00 1124445555555544 34444445555555555
Q ss_pred CCCCCCccccccccCCcCCcEEEccCCcCCCCCch-hhcCCCCCcEEECCCCcCcccC--CccccCCCCCCEEeCCCCcC
Q 041082 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY-EFCRLASLYELDLSGNKLSGSI--PTCFGNQTSLRILSLDSNKL 358 (639)
Q Consensus 282 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l 358 (639)
++|.+++..|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+++.. |..+..+++|++|++++|.+
T Consensus 309 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 55555544444445555555555555544433332 2444455555555555444433 44444445555555555554
Q ss_pred cccchhhhhcCCCCcEEEcccCCCCCCCccc-cccccccccccccCCCCC
Q 041082 359 ISIIPSTLWNLKDILYLNLSSNFFISPLPLE-IGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 359 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~l~ls~N~l~ 407 (639)
.+..|..|..+++|++|++++|.+.+..|.. +..+++|+.|++++|.++
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 4444444444444555555554444433322 444444444444444443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=354.44 Aligned_cols=363 Identities=20% Similarity=0.211 Sum_probs=303.6
Q ss_pred CcCccc--eecCCCC--------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccC-CccccCCcccceeec
Q 041082 39 VCHWTG--VSCDVRS--------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYF 107 (639)
Q Consensus 39 ~c~w~g--v~c~~~~--------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L 107 (639)
.|.|.+ |.|+... .+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 455544 7776542 46899999999999988999999999999999999998665 567999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEecccccCccccCcc--ccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCcc
Q 041082 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSS--IFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNF 178 (639)
Q Consensus 108 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l 178 (639)
++|.+.+..|..|+++++|++|+|++|++++.+|.. +..+++|++|+|++|.++++ .+++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999999999999999999999999999866655 99999999999999999875 368999999999999
Q ss_pred CccCCccccCC--CCCcEEEcccCCCcccCcccc--------CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhh
Q 041082 179 SGAIPHFIFNA--SKLSILELQKNSFFDLIPNTF--------GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQS 248 (639)
Q Consensus 179 ~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~ 248 (639)
++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+... ... ..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~~-------~~ 237 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDA-------IA 237 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH--HHH-------TT
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh--hcc-------cc
Confidence 99999888765 789999999999988765543 367899999999999886432211 000 01
Q ss_pred ccCccEEEeecCcccccc----------chhhc--CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch
Q 041082 249 SQSLEVFSMFNCNISGGI----------LEEIS--NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY 316 (639)
Q Consensus 249 ~~~l~~l~l~~n~l~~~~----------~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 316 (639)
..+++.+++++|...+.. +..+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 246777888777554322 11222 236899999999999988888899999999999999999988888
Q ss_pred hhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccc
Q 041082 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL 396 (639)
Q Consensus 317 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 396 (639)
.|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+..|..|..+++|++|++++|++++..+..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999988888889999999999999999999889899999999999999999988777777889999
Q ss_pred ccccccCCCCCCcC
Q 041082 397 VGIDLSMNNFSGFG 410 (639)
Q Consensus 397 ~~l~ls~N~l~g~g 410 (639)
+.|++++|+|++..
T Consensus 398 ~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 398 QKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCCcccCC
Confidence 99999999998743
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=366.42 Aligned_cols=356 Identities=20% Similarity=0.181 Sum_probs=279.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46889999999999888888999999999999999999888888999999999999999999888999999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccCCCCCc----EEEcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFNASKLS----ILELQKN 200 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~N 200 (639)
++|.+++..+..+.++++|++|+|++|.++++ .+++|++|++++|++++..|..+..+++|+ .|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 99999888778889999999999999988753 267888888888888876665544333222 3444444
Q ss_pred CCcccCcc------------------------------------------------------------------------
Q 041082 201 SFFDLIPN------------------------------------------------------------------------ 208 (639)
Q Consensus 201 ~l~~~~p~------------------------------------------------------------------------ 208 (639)
.+.+..+.
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 44333222
Q ss_pred ------------------------------ccCCCCCCCEEEccCCCCCCCCCcchhhc-------------------cc
Q 041082 209 ------------------------------TFGNLINLKRLNLYDNYLTSSTPELSFLY-------------------SL 239 (639)
Q Consensus 209 ------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------~l 239 (639)
.+..+++|++|++++|.+...+ .+ ... .+
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccC
Confidence 2333344444444444442222 11 000 01
Q ss_pred cCCcchh----------------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc-ccccCCcCCcE
Q 041082 240 SNCKYLE----------------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP-ITLCKLQKLQL 302 (639)
Q Consensus 240 ~~l~~l~----------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~ 302 (639)
.+++.+. ....+|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..+++|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 1111111 012456666666666554 44667788899999999999988877 68889999999
Q ss_pred EEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc-cCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCC
Q 041082 303 LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG-SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 303 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
|++++|++.+..|..|..+++|+.|++++|.+++ .+|..|..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999999999999999999999999999999998 479999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCCcC
Q 041082 382 FISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 382 l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
+++..|..+..+++|+.||+++|+|+.+.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 99999999999999999999999998643
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=357.47 Aligned_cols=388 Identities=19% Similarity=0.180 Sum_probs=275.1
Q ss_pred CCcCccceecCCCC-----------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 38 TVCHWTGVSCDVRS-----------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 38 ~~c~w~gv~c~~~~-----------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..|.|.|+ |+.+. .+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 45899988 86531 3689999999999998899999999999999999999998889999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCcc-ccCccccCCCCCCEEecCCCC-CCCC------CCCCccEEEccCCcc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTG-TIHSSIFNLSSLSDLDLSHNN-LTDV------QIPNLENLLLWGNNF 178 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~-l~~~------~l~~L~~L~L~~N~l 178 (639)
+++|.+.+..|..|+++++|++|+|++|.+++ ..|..+.++++|++|++++|. ++.+ .+++|++|++++|++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999999888889999999999999999987 357789999999999999998 4432 378999999999999
Q ss_pred CccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCc-chh----------------------
Q 041082 179 SGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE-LSF---------------------- 235 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~---------------------- 235 (639)
++.+|..+..+++|+.|+++.|.+....+..++.+++|++|++++|.+++.... ...
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 999999999888888888888887554333345678888888888887764100 000
Q ss_pred ------------------------------------hccccCCcch-------------------hhhccCccEEEeecC
Q 041082 236 ------------------------------------LYSLSNCKYL-------------------EQSSQSLEVFSMFNC 260 (639)
Q Consensus 236 ------------------------------------~~~l~~l~~l-------------------~~~~~~l~~l~l~~n 260 (639)
+..+.++..+ .....+++.+++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 0001111110 011234556666666
Q ss_pred ccccccchhh-cCCCCCCEEECCCCCCCccccc---cccCCcCCcEEEccCCcCCCCCc--hhhcCCCCCcEEECCCCcC
Q 041082 261 NISGGILEEI-SNLTNLTAIYLAGNKLNGSIPI---TLCKLQKLQLLSFVDNKLEGPIP--YEFCRLASLYELDLSGNKL 334 (639)
Q Consensus 261 ~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l 334 (639)
.+. .+|..+ ..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 554 344433 4566667777777766655432 24556666666666666654432 3456666666666666666
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccchh-----------------hhhcCCCCcEEEcccCCCCCCCccccccccccc
Q 041082 335 SGSIPTCFGNQTSLRILSLDSNKLISIIPS-----------------TLWNLKDILYLNLSSNFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 335 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-----------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 397 (639)
+ .+|..+..+++|++|++++|.++..... .+..+++|++|++++|+++ .+|. ...++.|+
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~ 476 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL 476 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred c-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence 6 3555555555666666655555432111 0136788999999999987 5665 46788999
Q ss_pred cccccCCCCCCcCcceEEEecCCceeeeEEechhhhhh
Q 041082 398 GIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYERA 435 (639)
Q Consensus 398 ~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~~ 435 (639)
.||+++|++++...... +....++.++++.+..
T Consensus 477 ~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 477 VMKISRNQLKSVPDGIF-----DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCCCCCTTGG-----GGCTTCCEEECCSSCB
T ss_pred EEecCCCccCCcCHHHH-----hcCcccCEEEecCCCc
Confidence 99999999987543211 1233556666666543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=344.98 Aligned_cols=366 Identities=19% Similarity=0.160 Sum_probs=308.6
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC-CccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI-PEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N 134 (639)
.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4778888887 4565 43 78999999999999988999999999999999999998666 567999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCC-------C-CCCCccEEEccCCccCccCCcc-ccCCCCCcEEEcccCCCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTD-------V-QIPNLENLLLWGNNFSGAIPHF-IFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------~-~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~ 205 (639)
++++..|..|.++++|++|+|++|.+++ + .+++|++|+|++|++++..|.. +.++++|+.|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9999999999999999999999999986 2 3789999999999999988876 78999999999999999999
Q ss_pred CccccCCC--CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCC---CCCCEEE
Q 041082 206 IPNTFGNL--INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL---TNLTAIY 280 (639)
Q Consensus 206 ~p~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l---~~L~~L~ 280 (639)
.|..+..+ .+|+.|++++|.+...++........... ....+|+.|++++|.+.+..+..+... ++|+.|+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP----FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT----TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccc----cccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 99888776 78999999999998865432111111111 012478999999999999888877554 8899999
Q ss_pred CCCCCCCccc----------cccccC--CcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCC
Q 041082 281 LAGNKLNGSI----------PITLCK--LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348 (639)
Q Consensus 281 Ls~N~l~~~~----------p~~~~~--l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 348 (639)
+++|.+.+.. +..+.. .++|+.|++++|++.+.+|..|+.+++|+.|++++|.+++..|..|..+++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 9998655431 222222 3689999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEe
Q 041082 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVF 428 (639)
Q Consensus 349 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l 428 (639)
++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|+.|++++|+|+++..... .....++.+
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L 400 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF-----DRLTSLQKI 400 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-----TTCTTCCEE
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh-----ccCCcccEE
Confidence 999999999999999999999999999999999999889999999999999999999987543211 123456666
Q ss_pred chhhhh
Q 041082 429 DLQYER 434 (639)
Q Consensus 429 ~~~~~~ 434 (639)
+++.+.
T Consensus 401 ~l~~N~ 406 (455)
T 3v47_A 401 WLHTNP 406 (455)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 666554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.49 Aligned_cols=343 Identities=20% Similarity=0.208 Sum_probs=298.3
Q ss_pred CcEEEEEeCCCCCccc-----------------CCcCCC--CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-
Q 041082 52 YRVTTLNISGLSLTST-----------------IPSELG--NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT- 111 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~- 111 (639)
.+++.|+|++|.++|. +|..++ ++++|++|+|++|.+.+.+|..|+++++|+.|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 4789999999999996 999999 99999999999999999999999999999999999998
Q ss_pred CCC-CCCccccCC------CCCcEEecccccCccccCc--cccCCCCCCEEecCCCCCC-CC----CCCCccEEEccCCc
Q 041082 112 LFG-EIPEELGNL------AELETLWLQNNFLTGTIHS--SIFNLSSLSDLDLSHNNLT-DV----QIPNLENLLLWGNN 177 (639)
Q Consensus 112 l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~-~~----~l~~L~~L~L~~N~ 177 (639)
++| .+|..++++ ++|++|+|++|+++ .+|. .+.++++|++|+|++|.++ .+ .+++|+.|+|++|+
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 998 899999887 99999999999999 7888 8999999999999999998 34 36789999999999
Q ss_pred cCccCCccccCCCC-CcEEEcccCCCcccCccccCCCC--CCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccE
Q 041082 178 FSGAIPHFIFNASK-LSILELQKNSFFDLIPNTFGNLI--NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254 (639)
Q Consensus 178 l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~ 254 (639)
++ .+|..+..+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+++..|.......... ....+|+.
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~-----~~~~~L~~ 437 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP-----FKGINVSS 437 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC-----CCCCCEEE
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc-----ccCCCCCE
Confidence 99 88988999999 999999999998 6677787765 899999999999986543211000000 11247899
Q ss_pred EEeecCccccccchhhcCCCCCCEEECCCCCCCccccccc-cCC-------cCCcEEEccCCcCCCCCchhhc--CCCCC
Q 041082 255 FSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL-CKL-------QKLQLLSFVDNKLEGPIPYEFC--RLASL 324 (639)
Q Consensus 255 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l-------~~L~~L~l~~N~l~~~~p~~~~--~l~~L 324 (639)
|++++|.+++..+..+..+++|+.|++++|.++ .+|..+ ... ++|+.|++++|+++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 999999999644445667999999999999999 555443 322 29999999999999 6777776 99999
Q ss_pred cEEECCCCcCcccCCccccCCCCCCEEeC------CCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccccc
Q 041082 325 YELDLSGNKLSGSIPTCFGNQTSLRILSL------DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398 (639)
Q Consensus 325 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 398 (639)
+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|.+ +.+|..+. +.|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCE
Confidence 999999999998 8999999999999999 56888999999999999999999999999 77888766 79999
Q ss_pred ccccCCCCCC
Q 041082 399 IDLSMNNFSG 408 (639)
Q Consensus 399 l~ls~N~l~g 408 (639)
||+++|++..
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 9999999864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=349.83 Aligned_cols=356 Identities=20% Similarity=0.177 Sum_probs=273.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 35777788888777777777777888888888888777777777777777777777777777766666777777777777
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC------CCCC--------------------------------------
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPN-------------------------------------- 167 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~-------------------------------------- 167 (639)
++|++++.....+..+++|++|++++|.++++ .+++
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 77777764434444467777777777666542 1333
Q ss_pred ---------------------------------------ccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 168 ---------------------------------------LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 168 ---------------------------------------L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
|+.|++++|++++..+..|..+++|+.|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 444555555555555555777889999999999887 4577
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh---------------hhccCccEEEeecCcccccc--chhhc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE---------------QSSQSLEVFSMFNCNISGGI--LEEIS 271 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~---------------~~~~~l~~l~l~~n~l~~~~--~~~~~ 271 (639)
.+..+++|++|++++|.+++..+. .+..+.+++.+. ....+|+.|++++|.+.+.. +..+.
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGG--CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred hhcccccCCEEECccCCcCcCchh--hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 788899999999999988865431 112222222221 12457889999999988766 67788
Q ss_pred CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch-hhcCCCCCcEEECCCCcCcccCCccccCCCCCCE
Q 041082 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY-EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350 (639)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 350 (639)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+. .|..+++|+.|++++|.+++..|..|..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 899999999999999888888899999999999999999877654 4888999999999999999888889999999999
Q ss_pred EeCCCCcCccc---chhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 351 LSLDSNKLISI---IPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 351 L~l~~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..++.|+.|++++|++++..
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 99999998873 3356888999999999999998888888999999999999999988754
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=362.31 Aligned_cols=319 Identities=22% Similarity=0.226 Sum_probs=269.3
Q ss_pred CcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccC-CccccCCcccceeeccCCcCCCCCC
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYFNNNTLFGEIP 117 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p 117 (639)
.|.|..|.+ ...+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 356777877 3468999999999999999999999999999999999776666 8889999999999999999999999
Q ss_pred ccccCCCCCcEEecccccCccccCcc--ccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccC
Q 041082 118 EELGNLAELETLWLQNNFLTGTIHSS--IFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFN 188 (639)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~ 188 (639)
..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++. .+++|++|+|++|.+++..|..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999999877665 99999999999999999874 3789999999999999999998887
Q ss_pred C--CCCcEEEcccCCCcccCccccCCCCC------CCEEEccCCCCCCCCCcchhhccc--cC-----------------
Q 041082 189 A--SKLSILELQKNSFFDLIPNTFGNLIN------LKRLNLYDNYLTSSTPELSFLYSL--SN----------------- 241 (639)
Q Consensus 189 l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~~~l--~~----------------- 241 (639)
+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+++..+.... ..+ ..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-NAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG-GTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH-hhcCcccccceecccccccccccc
Confidence 7 89999999999999988887777666 99999999988765432111 000 00
Q ss_pred --Ccchh------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 242 --CKYLE------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 242 --l~~l~------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
+.... ....+++.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 00000 0135788899999988888888888889999999999999888888888888999999999998888
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS 360 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 360 (639)
.|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88888889999999999998888888888888888888888888765
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=353.26 Aligned_cols=353 Identities=22% Similarity=0.233 Sum_probs=188.7
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|+
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 34555555555555555555555555555555555554333345666666666666666655555556666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC--------CCCCccEEEccCCccCccCCccc------------------
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--------QIPNLENLLLWGNNFSGAIPHFI------------------ 186 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--------~l~~L~~L~L~~N~l~~~~p~~~------------------ 186 (639)
+|.+++..|..+.++++|++|++++|.++++ .+++|+.|++++|++++..|..+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHH
T ss_pred CCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccCh
Confidence 6666666566666666666666666665542 12456666666666655444332
Q ss_pred ---------------------------------cCC--CCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 187 ---------------------------------FNA--SKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 187 ---------------------------------~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
..+ ++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 222 237777777777777767777777777777777777765433
Q ss_pred cchhhccccCCcchh-----------------------hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 232 ELSFLYSLSNCKYLE-----------------------QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~-----------------------~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
.. +..+.+++.+. ....+|+.+++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 290 ~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 290 HS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp TT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred hh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 21 11122222111 113567788888888887777777777777777766664322
Q ss_pred cc--cccccCC--cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC-ccccCCCCCCEEeCCCCcCcccch
Q 041082 289 SI--PITLCKL--QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP-TCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 289 ~~--p~~~~~l--~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
.. +..+..+ ++|+.|++++|++++..|..|..+++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 11 1111111 244444444455544444455555555555555555544333 344444555555555554444444
Q ss_pred hhhhcCCCCcEEEcccCCCC--CCCccccccccccccccccCCCCC
Q 041082 364 STLWNLKDILYLNLSSNFFI--SPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
..|..+++|+.|++++|.+. +.+|..+..+++|+.|++++|+++
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 44444444444444444432 233334444444444444444443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=346.88 Aligned_cols=358 Identities=20% Similarity=0.209 Sum_probs=257.0
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35777888888887777777888888888888888887776777788888888888888877777777888888888888
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCccccCCCCC----cEEEcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIFNASKL----SILELQKN 200 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~L~~N 200 (639)
++|++++..+..+.++++|++|+|++|.++.+. +++|+.|++++|++++..|..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 888777665556777778888888877776532 5677777777777766655555544444 45555555
Q ss_pred CCcccCcc------------------------------------------------------------------------
Q 041082 201 SFFDLIPN------------------------------------------------------------------------ 208 (639)
Q Consensus 201 ~l~~~~p~------------------------------------------------------------------------ 208 (639)
.+.+..|.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 44433332
Q ss_pred ---------ccCCCCCCCEEEccCCCCCCCCCcchhh-----------------ccccCCcchh------------hhcc
Q 041082 209 ---------TFGNLINLKRLNLYDNYLTSSTPELSFL-----------------YSLSNCKYLE------------QSSQ 250 (639)
Q Consensus 209 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------~~l~~l~~l~------------~~~~ 250 (639)
.|..+++|+.|++++|.++..+..+... ..+.+++.+. ...+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 2233344444444444444322111000 0111222111 1245
Q ss_pred CccEEEeecCcccccc--chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCc-hhhcCCCCCcEE
Q 041082 251 SLEVFSMFNCNISGGI--LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIP-YEFCRLASLYEL 327 (639)
Q Consensus 251 ~l~~l~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L 327 (639)
+|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|++.+..| ..|..+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 7888888888887654 67788888999999999988865444 8888889999999988887765 567888889999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 328 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
++++|.+++..|..|..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999888888888888888999999988887 56788888888888999998888888788888888888889988888
Q ss_pred CCcC
Q 041082 407 SGFG 410 (639)
Q Consensus 407 ~g~g 410 (639)
++..
T Consensus 507 ~~~~ 510 (570)
T 2z63_A 507 KSVP 510 (570)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=344.45 Aligned_cols=341 Identities=21% Similarity=0.188 Sum_probs=246.3
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57889999999999887788999999999999999999888999999999999999999998 46665 8999999999
Q ss_pred ccccCcc-ccCccccCCCCCCEEecCCCCCCCC---CCCCc--cEEEccCCcc--CccCCccccCCC-------------
Q 041082 132 QNNFLTG-TIHSSIFNLSSLSDLDLSHNNLTDV---QIPNL--ENLLLWGNNF--SGAIPHFIFNAS------------- 190 (639)
Q Consensus 132 ~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~---~l~~L--~~L~L~~N~l--~~~~p~~~~~l~------------- 190 (639)
++|++++ .+|..|+++++|++|+|++|.+++. .+++| +.|++++|++ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 9999987 4788999999999999999998863 35667 9999999998 666666655532
Q ss_pred ----------------------------------------------------------------------CCcEEEcccC
Q 041082 191 ----------------------------------------------------------------------KLSILELQKN 200 (639)
Q Consensus 191 ----------------------------------------------------------------------~L~~L~L~~N 200 (639)
+|+.|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 4445555555
Q ss_pred CCcccCcccc-----CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCC
Q 041082 201 SFFDLIPNTF-----GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTN 275 (639)
Q Consensus 201 ~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~ 275 (639)
.+.+.+|..+ +.+++|+.+++++|.+ ..+... . ..+ ....+++.|++++|.+..... ...+++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~-~-~~~-------~~~~~L~~L~l~~n~l~~~~~--~~~l~~ 325 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSY-I-YEI-------FSNMNIKNFTVSGTRMVHMLC--PSKISP 325 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHH-H-HHH-------HHTCCCSEEEEESSCCCCCCC--CSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccce-ecchhh-h-hcc-------cccCceeEEEcCCCccccccc--hhhCCc
Confidence 5554455544 5555555555555554 221100 0 000 001346777777776654321 246677
Q ss_pred CCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC--CCchhhcCCCCCcEEECCCCcCcccCCc-cccCCCCCCEEe
Q 041082 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG--PIPYEFCRLASLYELDLSGNKLSGSIPT-CFGNQTSLRILS 352 (639)
Q Consensus 276 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ 352 (639)
|++|++++|.+++.+|..+..+++|+.|++++|++.+ .+|..++.+++|+.|++++|.+++.+|. .+..+++|+.|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 7777777777777777777777777777777777775 4456677777777777777777764443 466777777777
Q ss_pred CCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 353 LDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 353 l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
+++|++++..|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|+|+.+.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 777777776665543 56777777777776 56666667777777777777776544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=348.00 Aligned_cols=361 Identities=21% Similarity=0.221 Sum_probs=250.0
Q ss_pred ceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC
Q 041082 44 GVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 44 gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
.|.|..++ ..++.|||++|.|++..|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++.+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 46787532 368999999999998888899999999999999999998888899999999999999999998
Q ss_pred CCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCcccc
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIF 187 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~ 187 (639)
..|..|.++++|++|+|++|++++..+..|+++++|++|+|++|.++.+. +++|++|+|++|++++..|..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 88889999999999999999999888888999999999999999998643 68999999999999988777665
Q ss_pred CCCCC----cEEEcccCCCcccCccccCC---------------------------------------------------
Q 041082 188 NASKL----SILELQKNSFFDLIPNTFGN--------------------------------------------------- 212 (639)
Q Consensus 188 ~l~~L----~~L~L~~N~l~~~~p~~~~~--------------------------------------------------- 212 (639)
.+.++ ..++++.|.+....+..+..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 43332 34555555554433322211
Q ss_pred ----------------------------------------------------CCCCCEEEccCCCCCCCCCcchhhcccc
Q 041082 213 ----------------------------------------------------LINLKRLNLYDNYLTSSTPELSFLYSLS 240 (639)
Q Consensus 213 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 240 (639)
...|+.|++.+|.+....... +.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~ 349 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----LK 349 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB-----CT
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc-----ch
Confidence 122233333333222211100 00
Q ss_pred CCcchh------------hhccCccEEEeecCccccc-------------------------cchhhcCCCCCCEEECCC
Q 041082 241 NCKYLE------------QSSQSLEVFSMFNCNISGG-------------------------ILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 241 ~l~~l~------------~~~~~l~~l~l~~n~l~~~-------------------------~~~~~~~l~~L~~L~Ls~ 283 (639)
.++.+. ....+++.++++.|.+... .+..+..+++|+.++++.
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence 000000 0123455666655554321 122334455566666665
Q ss_pred CCCCcccc-ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcC-cccCCccccCCCCCCEEeCCCCcCccc
Q 041082 284 NKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL-SGSIPTCFGNQTSLRILSLDSNKLISI 361 (639)
Q Consensus 284 N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~l~~N~l~~~ 361 (639)
|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++++.|++++|.+ .+..|..|..+++|++|++++|+++++
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 55444333 3456667777777777777777777777777777777777753 344566777777777777777777777
Q ss_pred chhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCc
Q 041082 362 IPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409 (639)
Q Consensus 362 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 409 (639)
.|..|.++++|++|+|++|++++..|..+..+++|+.||+++|+|++.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 777777777777777777777776666777777777777777777654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=346.18 Aligned_cols=370 Identities=20% Similarity=0.170 Sum_probs=306.9
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4677777786 4676665 799999999999999888899999999999999999999999999999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCc-cCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSG-AIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+++..|..|.++++|++|+|++|.++++. +++|++|++++|++++ .+|..+.++++|+.|++++|.+.+..|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 99999999999999999999999998643 7899999999999986 6799999999999999999999998888
Q ss_pred ccCCCCCCC----EEEccCCCCCCCCCcchhh------------------------------------------------
Q 041082 209 TFGNLINLK----RLNLYDNYLTSSTPELSFL------------------------------------------------ 236 (639)
Q Consensus 209 ~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 236 (639)
.|+.+++|+ +|++++|.+++.++.....
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 777665544 6777777666443321000
Q ss_pred ------------------------------cccc----------------------CCcc--------------------
Q 041082 237 ------------------------------YSLS----------------------NCKY-------------------- 244 (639)
Q Consensus 237 ------------------------------~~l~----------------------~l~~-------------------- 244 (639)
..+. +++.
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~ 331 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCC
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccc
Confidence 0000 0000
Q ss_pred -hhh------------hccCccEEEeecCccccc--cchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCc
Q 041082 245 -LEQ------------SSQSLEVFSMFNCNISGG--ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309 (639)
Q Consensus 245 -l~~------------~~~~l~~l~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 309 (639)
+.. ...+|+.+++++|.+++. ++..+..+++|++|++++|.+++ +|..+..+++|+.|++++|+
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 000 123566777777777665 37778889999999999999885 66889999999999999999
Q ss_pred CCCCCc-hhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc-cchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 310 LEGPIP-YEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS-IIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 310 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
+.+..| ..|..+++|+.|++++|.+++..|..|..+++|++|++++|.+.+ .+|..|..+++|++|++++|.+++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 999888 689999999999999999999999999999999999999999998 578899999999999999999999999
Q ss_pred cccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 388 LEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+..+++|+.|++++|++++...... +....++.++++++.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHY-----NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGT-----TTCTTCCEEECTTSC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHc-----cCCCcCCEEECCCCc
Confidence 999999999999999999987522111 123456667766654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=343.41 Aligned_cols=345 Identities=21% Similarity=0.205 Sum_probs=253.0
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC-----CCCc----cccCCC
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG-----EIPE----ELGNLA 124 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----~~p~----~~~~l~ 124 (639)
++.|++++|.+++..|..|+.+++|++|+|++|.+.+..|..|.++++|+.|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6667777777766666666777777777777777776666667777777777776654433 2232 566777
Q ss_pred CCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC----------CCCCccEEEccCCccCccCCccccCCCCCcE
Q 041082 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194 (639)
Q Consensus 125 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 194 (639)
+|++|+|++|.+++..+..|.++++|++|++++|.++.. ..++|+.|++++|++++..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 777777777777777777777777777777777764321 1246778888888888777777777888888
Q ss_pred EEcccCCCcccCc-cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccc--cccchhhc
Q 041082 195 LELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNIS--GGILEEIS 271 (639)
Q Consensus 195 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~--~~~~~~~~ 271 (639)
|++++|.+.+.+| ..|..+++|++|++++|++++..+.. +. ..++++.|++++|.+. +.+|..+.
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~-------~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-----FA-------LVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT-----TT-------TCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh-----hh-------cCcccccchhccccccccccCCcccc
Confidence 8888888776544 56777888888888888776543321 11 1246778888888776 55677788
Q ss_pred CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCc--------hhhcCCCCCcEEECCCCcCcccCCcccc
Q 041082 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIP--------YEFCRLASLYELDLSGNKLSGSIPTCFG 343 (639)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 343 (639)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+ ..|..+++|+.|++++|+++...+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 88888888888888887777778888888888888888875422 2367788888888888888866566788
Q ss_pred CCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccc-cccccccccccCCCCCCcC
Q 041082 344 NQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG-NLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 344 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~l~ls~N~l~g~g 410 (639)
++++|+.|++++|+++++.+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.+-.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 888888888888888887777788888888888888888887777676 6788888888888887643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=337.07 Aligned_cols=350 Identities=21% Similarity=0.216 Sum_probs=230.1
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46778888888887776677888888888888888888777778888888888888888877 45554 7788888888
Q ss_pred ccccCccc-cCccccCCCCCCEEecCCCCCCCCC---CCCc--cEEEccCCcc--CccCCccccCCC-------------
Q 041082 132 QNNFLTGT-IHSSIFNLSSLSDLDLSHNNLTDVQ---IPNL--ENLLLWGNNF--SGAIPHFIFNAS------------- 190 (639)
Q Consensus 132 ~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~---l~~L--~~L~L~~N~l--~~~~p~~~~~l~------------- 190 (639)
++|++++. +|..|.++++|++|+|++|.++... +++| +.|++++|++ ++..|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 88888763 4577888888888888888776532 3445 7888888877 666665554432
Q ss_pred -------------CCcEEEcccCCC-----ccc---------------------------CccccCCCCCCCEEEccCCC
Q 041082 191 -------------KLSILELQKNSF-----FDL---------------------------IPNTFGNLINLKRLNLYDNY 225 (639)
Q Consensus 191 -------------~L~~L~L~~N~l-----~~~---------------------------~p~~~~~l~~L~~L~Ls~N~ 225 (639)
+|+.+++++|.. .+. .+..+ ..++|++|++++|.
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccE
Confidence 333333333320 000 00000 11256666666666
Q ss_pred CCCCCCcchhhccccCCcchhh-------------------hccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC
Q 041082 226 LTSSTPELSFLYSLSNCKYLEQ-------------------SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286 (639)
Q Consensus 226 l~~~~~~~~~~~~l~~l~~l~~-------------------~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 286 (639)
+++..|...+.....+++.+.. ...+++.+++++|.+..... ...+++|++|++++|.+
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCcc
Confidence 6643322111000111111110 01347777777777653221 15677788888888888
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCC--chhhcCCCCCcEEECCCCcCcccCC-ccccCCCCCCEEeCCCCcCcccch
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPI--PYEFCRLASLYELDLSGNKLSGSIP-TCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
++.+|..+..+++|+.|++++|++++.. |..|..+++|+.|++++|.+++.+| ..+..+++|++|++++|++++..|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 8777777777888888888888877633 4567777888888888888877344 457777788888888888777666
Q ss_pred hhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
..+. ++|++|++++|+++ .+|..+..++.|+.|++++|+|+.+.
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 5443 57778888888776 46666667778888888888877544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=348.24 Aligned_cols=341 Identities=20% Similarity=0.264 Sum_probs=297.7
Q ss_pred CcEEEEEeCCCCCcc-----------------cCCcCCC--CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-
Q 041082 52 YRVTTLNISGLSLTS-----------------TIPSELG--NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT- 111 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~- 111 (639)
.+++.|+|++|.++| .+|..++ ++++|++|+|++|.+.+.+|..|+++++|+.|+|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 478999999999998 4999988 99999999999999999999999999999999999998
Q ss_pred CCC-CCCccccCCC-------CCcEEecccccCccccCc--cccCCCCCCEEecCCCCCCCCC----CCCccEEEccCCc
Q 041082 112 LFG-EIPEELGNLA-------ELETLWLQNNFLTGTIHS--SIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNN 177 (639)
Q Consensus 112 l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~----l~~L~~L~L~~N~ 177 (639)
+++ .+|..+++++ +|++|+|++|+++ .+|. .+.++++|+.|+|++|.++.++ +++|+.|+|++|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence 988 8998777665 9999999999999 8888 8999999999999999998653 6789999999999
Q ss_pred cCccCCccccCCCC-CcEEEcccCCCcccCccccCCCCC--CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccE
Q 041082 178 FSGAIPHFIFNASK-LSILELQKNSFFDLIPNTFGNLIN--LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEV 254 (639)
Q Consensus 178 l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~ 254 (639)
++ .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+++..|.+. ..+..+ ...+|+.
T Consensus 607 l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--~~l~~~-----~~~~L~~ 677 (876)
T 4ecn_A 607 IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--CSMDDY-----KGINAST 677 (876)
T ss_dssp CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--SCTTTC-----CCCCEEE
T ss_pred cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch--hhhccc-----cCCCcCE
Confidence 99 89988999999 999999999998 66888877755 9999999999998655332 111111 1247899
Q ss_pred EEeecCccccccchh-hcCCCCCCEEECCCCCCCccccccccC--------CcCCcEEEccCCcCCCCCchhhc--CCCC
Q 041082 255 FSMFNCNISGGILEE-ISNLTNLTAIYLAGNKLNGSIPITLCK--------LQKLQLLSFVDNKLEGPIPYEFC--RLAS 323 (639)
Q Consensus 255 l~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~l~~N~l~~~~p~~~~--~l~~ 323 (639)
|++++|.+.. +|.. +..+++|+.|+|++|.++ .+|..+.. +++|+.|++++|+++ .+|..+. .+++
T Consensus 678 L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 678 VTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp EECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred EEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 9999999995 5554 458999999999999998 56655433 238999999999999 6788876 8999
Q ss_pred CcEEECCCCcCcccCCccccCCCCCCEEeCCC------CcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccc
Q 041082 324 LYELDLSGNKLSGSIPTCFGNQTSLRILSLDS------NKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLV 397 (639)
Q Consensus 324 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 397 (639)
|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 9999999999998 788999999999999976 888999999999999999999999999 78888766 6999
Q ss_pred cccccCCCCCCc
Q 041082 398 GIDLSMNNFSGF 409 (639)
Q Consensus 398 ~l~ls~N~l~g~ 409 (639)
.||+++|++..+
T Consensus 831 ~LdLs~N~l~~i 842 (876)
T 4ecn_A 831 ILDIADNPNISI 842 (876)
T ss_dssp EEECCSCTTCEE
T ss_pred EEECCCCCCCcc
Confidence 999999998653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=325.50 Aligned_cols=310 Identities=20% Similarity=0.166 Sum_probs=218.7
Q ss_pred CCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc
Q 041082 60 SGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT 139 (639)
Q Consensus 60 ~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 139 (639)
++++++ .+|..+. +++++|+|++|.+++..|..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|++++.
T Consensus 19 ~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 19 HRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 334454 4565554 5788899999998888888888889999999999988888888888899999999999988877
Q ss_pred cCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCC
Q 041082 140 IHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL 213 (639)
Q Consensus 140 ~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 213 (639)
.+..|.++++|++|+|++|.++.+ .+++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..+..|..+
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 666778888888777777766542 13344444444444444444444444455555555554444444444444
Q ss_pred CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccc
Q 041082 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293 (639)
Q Consensus 214 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 293 (639)
++|+.|+++ +|.+.+..+..+..+++|+.|++++|.+.+.+|..
T Consensus 176 ~~L~~L~l~------------------------------------~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 176 HGLIVLRLR------------------------------------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp TTCCEEEEE------------------------------------SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred CCCcEEeCC------------------------------------CCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 444444444 44444444455666777777777777766666666
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCc
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDIL 373 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 373 (639)
.....+|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+..|..|..+++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 55566777888888877766556777778888888888888777777777788888888888888887777777788888
Q ss_pred EEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 374 YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 374 ~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 88888888777666677777888888888887764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=327.30 Aligned_cols=361 Identities=20% Similarity=0.163 Sum_probs=281.1
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.|++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999998 5787776 89999999999999888899999999999999999999999999999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCCccccCCCCC--cEEEcccCCC--c
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIPHFIFNASKL--SILELQKNSF--F 203 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~ 203 (639)
+++. +|.. .+++|++|+|++|.++++ .+++|++|++++|++++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9994 5655 899999999999999874 26799999999999986 356677788 9999999999 7
Q ss_pred ccCccccCCCC-CCCEEEccCCCCCCCCCcc-----------------------------hhhccccCCcchhh------
Q 041082 204 DLIPNTFGNLI-NLKRLNLYDNYLTSSTPEL-----------------------------SFLYSLSNCKYLEQ------ 247 (639)
Q Consensus 204 ~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~-----------------------------~~~~~l~~l~~l~~------ 247 (639)
+..|..+..+. ....+++++|.+.+..+.. ..+..+.+++.+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 77777776643 1223344444443321110 00111222222111
Q ss_pred -----------hccCccEEEeecCccccccchhh-----cCCCCCCEEECCCCCCCcccc-c------------------
Q 041082 248 -----------SSQSLEVFSMFNCNISGGILEEI-----SNLTNLTAIYLAGNKLNGSIP-I------------------ 292 (639)
Q Consensus 248 -----------~~~~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~p-~------------------ 292 (639)
...+++.|++++|.+.|.+|..+ +.+++|+.+++++|.+ .+| .
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 02378899999999988888777 6666666666665555 222 0
Q ss_pred ------c-ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc--cCCccccCCCCCCEEeCCCCcCcccch
Q 041082 293 ------T-LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG--SIPTCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 293 ------~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
. +..+++|++|++++|++++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|.+.+.+|
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 1 2678899999999999999999999999999999999999997 556789999999999999999999555
Q ss_pred h-hhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 364 S-TLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 364 ~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
. .+..+++|++|++++|.+++.+|..+. +.|+.|++++|+|+.+..... ....++.++++.+.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~------~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV------KLEALQELNVASNQ 455 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG------GCTTCCEEECCSSC
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh------cCCCCCEEECCCCc
Confidence 5 478899999999999999988887665 789999999999986543221 23345666666554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.34 Aligned_cols=369 Identities=21% Similarity=0.207 Sum_probs=294.5
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
.+.++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|++.+..|..|+++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 444455565 4666664 5799999999999988888999999999999999999998889999999999999999999
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCc-cCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSG-AIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
++..|..|.++++|++|++++|.++.+ .+++|++|++++|.+++ .+|..+.++++|+.|++++|.+.+..|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 998889999999999999999999874 36899999999999987 57999999999999999999999998888
Q ss_pred cCCCCCC----CEEEccCCCCCCCCCcchhhccc----------------------cC----------------------
Q 041082 210 FGNLINL----KRLNLYDNYLTSSTPELSFLYSL----------------------SN---------------------- 241 (639)
Q Consensus 210 ~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~l----------------------~~---------------------- 241 (639)
++.+++| +.+++++|.+++.++.......+ .+
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 8888888 89999999887654421100000 00
Q ss_pred -----Cc-------------c-------hhhhccCccEEEeecCcccc---------------------ccch-h-----
Q 041082 242 -----CK-------------Y-------LEQSSQSLEVFSMFNCNISG---------------------GILE-E----- 269 (639)
Q Consensus 242 -----l~-------------~-------l~~~~~~l~~l~l~~n~l~~---------------------~~~~-~----- 269 (639)
+. . .-....+++.+++++|.+.+ .+|. .
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~ 328 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCC
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccC
Confidence 00 0 00001233333333333321 1111 0
Q ss_pred --------------hcCCCCCCEEECCCCCCCccc--cccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCc
Q 041082 270 --------------ISNLTNLTAIYLAGNKLNGSI--PITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNK 333 (639)
Q Consensus 270 --------------~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 333 (639)
...+++|+.|++++|.+++.. |..+..+++|+.|++++|++.+..+. +..+++|+.|++++|.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred EEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 046789999999999998654 67788999999999999999876555 9999999999999999
Q ss_pred CcccCC-ccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCC-CCCccccccccccccccccCCCCCCcCc
Q 041082 334 LSGSIP-TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFI-SPLPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 334 l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++...
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 998776 57899999999999999999999999999999999999999997 5789999999999999999999987532
Q ss_pred ceEEEecCCceeeeEEechhhhh
Q 041082 412 IYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 412 vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
... +....++.++++.+.
T Consensus 488 ~~~-----~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 488 TAF-----NSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTT-----TTCTTCCEEECCSSC
T ss_pred hhh-----hcccCCCEEeCCCCc
Confidence 111 123345666665543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=344.73 Aligned_cols=345 Identities=25% Similarity=0.241 Sum_probs=204.7
Q ss_pred CcEEEEEeCCCCCcccC-CcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCcc--ccCCCCCcE
Q 041082 52 YRVTTLNISGLSLTSTI-PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEE--LGNLAELET 128 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~ 128 (639)
.+++.|+|++|...+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+|.. |+++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 35677778777655555 566777788888888888777777777777888888888888777766654 777777888
Q ss_pred EecccccCccccC-ccccCCCCCCEEecCCCCCCCCC------C--CC------------------------------cc
Q 041082 129 LWLQNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTDVQ------I--PN------------------------------LE 169 (639)
Q Consensus 129 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~------l--~~------------------------------L~ 169 (639)
|+|++|.+++..+ ..|.++++|++|+|++|.+++.. + ++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 8888887776654 46777777777777777765421 1 23 55
Q ss_pred EEEccCCccCccCCccccC--------------------------------------CCCCcEEEcccCCCcccCccccC
Q 041082 170 NLLLWGNNFSGAIPHFIFN--------------------------------------ASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 170 ~L~L~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
.|++++|.+++.+|..+.. .++|+.|++++|.+.+..|..|.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 5555555554443332211 14566666666666666666666
Q ss_pred CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc
Q 041082 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 291 (639)
.+++|+.|+|++|++++..+.. +.. ..+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~-----~~~-------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEA-----FYG-------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTT-----TTT-------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred cCCCCCEEECCCCcCCCCChHH-----hcC-------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 6666666666666666543321 111 2356666666666666656666666666666666666665555
Q ss_pred ccccCCcCCcEEEccCCcCCCCC----------------------------------------chhhcCCCCCcEEECCC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPI----------------------------------------PYEFCRLASLYELDLSG 331 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~----------------------------------------p~~~~~l~~L~~L~Ls~ 331 (639)
..|..+++|+.|++++|.+++.. +..++.+++|+.|++++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 55666666666666666554321 01123455666666666
Q ss_pred CcCcccCCc-cccCCCCCCEEeCCCCcCc-----ccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCC
Q 041082 332 NKLSGSIPT-CFGNQTSLRILSLDSNKLI-----SIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 332 N~l~~~~p~-~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
|.+++..+. .+..+++|+.|++++|.+. +..|..|..+++|+.|+|++|.+++..|..+..+++|+.|++++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 666543222 2223344444444444443 2222334444555555555555555555555555555555555555
Q ss_pred CCC
Q 041082 406 FSG 408 (639)
Q Consensus 406 l~g 408 (639)
|++
T Consensus 516 l~~ 518 (844)
T 3j0a_A 516 LTV 518 (844)
T ss_dssp CSS
T ss_pred CCc
Confidence 544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=324.50 Aligned_cols=360 Identities=22% Similarity=0.175 Sum_probs=277.3
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++++++ +|..+. ++|++|+|++|.+.+..|..|.++++|++|++++|++++..|..|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999986 777665 89999999999999888899999999999999999999999999999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCccCccCCccccCCCCC--cEEEcccCCC--c
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNNFSGAIPHFIFNASKL--SILELQKNSF--F 203 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~ 203 (639)
+++ .+|.. .+++|++|+|++|.++++. +++|++|+|++|++++. .+..+++| +.|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 45655 8999999999999998753 67999999999999863 34455556 9999999999 7
Q ss_pred ccCccccCCCC--CCCEEEccCCCCCCCCCcch---------------------------hhccccCCcchhh-------
Q 041082 204 DLIPNTFGNLI--NLKRLNLYDNYLTSSTPELS---------------------------FLYSLSNCKYLEQ------- 247 (639)
Q Consensus 204 ~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~---------------------------~~~~l~~l~~l~~------- 247 (639)
+..|..|..+. .+ .+++++|.+.+..+... .+..+..+..+..
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 77777776544 11 23444444433221100 0011111111110
Q ss_pred ----------hccCccEEEeecCccccccchhh-----cCC--------------------------CCCCEEECCCCCC
Q 041082 248 ----------SSQSLEVFSMFNCNISGGILEEI-----SNL--------------------------TNLTAIYLAGNKL 286 (639)
Q Consensus 248 ----------~~~~l~~l~l~~n~l~~~~~~~~-----~~l--------------------------~~L~~L~Ls~N~l 286 (639)
...++++|++++|.+.|.+|..+ ..+ .+|+.|++++|.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 01378899999999988777665 222 3466777777766
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCccc--CCccccCCCCCCEEeCCCCcCcccch-
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGS--IPTCFGNQTSLRILSLDSNKLISIIP- 363 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~l~~N~l~~~~p- 363 (639)
.... ....+++|++|++++|++++.+|..+..+++|+.|++++|++++. +|..|..+++|++|++++|++.+.+|
T Consensus 344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 4221 126789999999999999999999999999999999999999974 35678999999999999999999444
Q ss_pred hhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 364 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+..+++|++|++++|.+++.+|..+. +.|+.|++++|+++.+.... .....++.++++++.
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~------~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV------THLQALQELNVASNQ 484 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT------TSSCCCSEEECCSSC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh------cCCCCCCEEECCCCC
Confidence 4588899999999999999887776654 68999999999998543321 123456666666654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=325.00 Aligned_cols=305 Identities=17% Similarity=0.170 Sum_probs=254.4
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+.+++.|++++|.+....+..|.++++|+.|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788888888888886655667788888888888888888888888888888888888888888888788888888888
Q ss_pred ecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 154 DLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 154 ~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
+|++|.|+.+. +++|++|+|++|.+++..|..+..+++|+.|++++|.+.+.. ++.+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888887643 678888999999998888888999999999999999998763 556788999999999887
Q ss_pred CCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC
Q 041082 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 307 (639)
+... ..+++.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++
T Consensus 206 ~l~~-----------------~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 TLAI-----------------PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp EEEC-----------------CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred cccC-----------------CchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 5311 236788899999887543322 3689999999999986 46788899999999999
Q ss_pred CcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 308 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
|.+.+.+|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+++.
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-- 339 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-- 339 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC--
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc--
Confidence 99999999999999999999999999986 46677788999999999999985 667788899999999999998764
Q ss_pred cccccccccccccccCCCCCC
Q 041082 388 LEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g 408 (639)
.+..++.|+.|++++|+|.+
T Consensus 340 -~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 340 -KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCCTTCCCSEEECCSSCEEH
T ss_pred -ChhhcCCCCEEEeeCCCCCC
Confidence 26677889999999999865
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=323.07 Aligned_cols=371 Identities=21% Similarity=0.203 Sum_probs=285.4
Q ss_pred ecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCC
Q 041082 46 SCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAE 125 (639)
Q Consensus 46 ~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 125 (639)
.|.. ..+ .+.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++.+..|..|+++++
T Consensus 3 ~C~~--~~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDA--SGV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECT--TSE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCC--Cce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 5654 334 789999998 5677665 79999999999999988999999999999999999999999999999999
Q ss_pred CcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-------CCCCccEEEccCCccCccCC-ccccCCCCCcEEEc
Q 041082 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV-------QIPNLENLLLWGNNFSGAIP-HFIFNASKLSILEL 197 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L 197 (639)
|++|+|++|++++..|..|.++++|++|+|++|.++++ .+++|++|++++|++.+.+| ..+.++++|+.|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 99999999999998888899999999999999999853 26799999999999555555 68999999999999
Q ss_pred ccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhh-----------------hccCccEEEeecC
Q 041082 198 QKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ-----------------SSQSLEVFSMFNC 260 (639)
Q Consensus 198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~-----------------~~~~l~~l~l~~n 260 (639)
++|.+.+..|..++.+++|++|+++.|.+...+... ...+.+++.+.. ...+++.+++++|
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHH--HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cCCcccccChhhhhccccCceEecccCcccccchhh--HhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 999999999999999999999999999876432211 111222221110 1123333444333
Q ss_pred ccccccchh---------------------------------------------------------------hcCCCCCC
Q 041082 261 NISGGILEE---------------------------------------------------------------ISNLTNLT 277 (639)
Q Consensus 261 ~l~~~~~~~---------------------------------------------------------------~~~l~~L~ 277 (639)
.+.+..+.. +...++|+
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 332211110 11235688
Q ss_pred EEECCCCCCCccccccc-cCCcCCcEEEccCCcCCCCCch---hhcCCCCCcEEECCCCcCcccCC--ccccCCCCCCEE
Q 041082 278 AIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGPIPY---EFCRLASLYELDLSGNKLSGSIP--TCFGNQTSLRIL 351 (639)
Q Consensus 278 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 351 (639)
.|++++|.+. .+|..+ ..+++|+.|++++|++.+.+|. .++.+++|+.|++++|++++..+ ..+..+++|++|
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 8888888886 567665 5799999999999999987653 37889999999999999987543 568899999999
Q ss_pred eCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccc------------------cccccccccccccCCCCCCcCcce
Q 041082 352 SLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE------------------IGNLKVLVGIDLSMNNFSGFGSIY 413 (639)
Q Consensus 352 ~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~------------------~~~l~~L~~l~ls~N~l~g~g~vy 413 (639)
++++|+++. +|..+..+++|++|++++|.+... |.. +..++.|+.|++++|+|+.+...
T Consensus 393 ~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~- 469 (549)
T 2z81_A 393 DISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA- 469 (549)
T ss_dssp ECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-
T ss_pred ECCCCCCcc-CChhhcccccccEEECCCCCcccc-cchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-
Confidence 999999985 677788888888888888887532 221 12577888889999988765431
Q ss_pred EEEecCCceeeeEEechhhhhh
Q 041082 414 KARIQDGMKVAVKVFDLQYERA 435 (639)
Q Consensus 414 ~~~l~~g~~vavK~l~~~~~~~ 435 (639)
+....++.++++++..
T Consensus 470 ------~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 470 ------SLFPVLLVMKISRNQL 485 (549)
T ss_dssp ------GGCTTCCEEECCSSCC
T ss_pred ------ccCccCCEEecCCCcc
Confidence 1234567777776643
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=306.37 Aligned_cols=305 Identities=17% Similarity=0.175 Sum_probs=260.0
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.++++++|++++|.+....+..|..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999886555557889999999999999988888889999999999999999998888889999999999
Q ss_pred ecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 154 DLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 154 ~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
+|++|.++.+. +++|++|++++|++++..|..+..+++|+.|++++|.+.+.. ++.+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 99999888643 678999999999999888888999999999999999998763 567889999999999887
Q ss_pred CCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC
Q 041082 228 SSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307 (639)
Q Consensus 228 ~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 307 (639)
+.. ...+++.+++++|.+... +. ...++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 200 ~~~-----------------~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 200 TLA-----------------IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp EEE-----------------CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ccC-----------------CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 531 123688899999988764 32 2357899999999999864 5788899999999999
Q ss_pred CcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCc
Q 041082 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLP 387 (639)
Q Consensus 308 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 387 (639)
|++.+..|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++.+ +|..+..+++|++|++++|.++.. |
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred CcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C
Confidence 99999889999999999999999999986 46667888999999999999986 566678899999999999998764 3
Q ss_pred cccccccccccccccCCCCCC
Q 041082 388 LEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 388 ~~~~~l~~L~~l~ls~N~l~g 408 (639)
+..++.|+.|++++|+|.+
T Consensus 335 --~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEH
T ss_pred --chhhccCCEEEcCCCCccc
Confidence 6778899999999999865
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=306.06 Aligned_cols=320 Identities=29% Similarity=0.384 Sum_probs=216.4
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++|.+++..| ++++++|++|++++|.+.+..| +.++++|++|++++|.+.+..+ +.++++|++|+|+
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 56666666666665433 6666666666666666664433 6666666666666666665433 6666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+|.+++. + .+..+++|++|+++ |.+... .+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 143 ~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 143 SNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCccCCC-h-hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 6666643 2 36666666666665 333332 356677777777776643 235666777777777777766554
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
++.+++|+.|++++|.+++.+ .+. ...+|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~-------~l~-------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIG-------TLA-------SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-------GGG-------GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred -ccccCCCCEEECCCCCcccch-------hhh-------cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 566777777777777766531 111 12467778888887776544 6777888888888888776
Q ss_pred cccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc
Q 041082 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN 368 (639)
Q Consensus 289 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 368 (639)
..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+.+. ..+..
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 351 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 351 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc
Confidence 544 6677788888888888776544 6777888888888888877655 66778888888888887775 35677
Q ss_pred CCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCc
Q 041082 369 LKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 369 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|+.|++++|++++..| +..++.|+.|++++|++++...
T Consensus 352 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 7888888888888777666 6777788888888888776543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=297.24 Aligned_cols=277 Identities=18% Similarity=0.226 Sum_probs=186.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccccCC----CCCCCCcCccceecCC--------CCCcEEEEEeCCCCCcccCCcCCC
Q 041082 6 DNNHLSFQVFVLKGHVTDDPTNFLAKNW----NTSSTVCHWTGVSCDV--------RSYRVTTLNISGLSLTSTIPSELG 73 (639)
Q Consensus 6 ~~~~~~~~ll~~k~~~~~~~~~~l~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~p~~l~ 73 (639)
...++.+||++||+.+..|+.+++.. | ....++|.|.|+.|.. ...+|+.|+|++|.++ .+|..++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 34678899999999876688788877 9 3456899999999952 2357888888888887 6787888
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
++++|++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..|+++++|++|+|++|++.+.+|..+...
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------
Confidence 8888888888888888 78888888888888888888887 678888888888888888888877777655431
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
.++..+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++.
T Consensus 174 ---------------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l---- 221 (328)
T 4fcg_A 174 ---------------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL---- 221 (328)
T ss_dssp ---------------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC----
T ss_pred ---------------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC----
Confidence 01122334555666666666555 3455555666666666666555432
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.
T Consensus 222 ---------------------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 222 ---------------------------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ---------------------------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ---------------------------------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 22234455555556665555555555555555555555555555555
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 357 (639)
+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++..|.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 55555555555555555555555555555555555555555443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=313.79 Aligned_cols=395 Identities=22% Similarity=0.248 Sum_probs=287.3
Q ss_pred cccccCCCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 27 NFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 27 ~~l~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..++. |+.. .|..|..-.|.... ...+-++.+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+
T Consensus 11 ~~~~~-~~~~-~p~~~~~c~~~~~~---~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~ 82 (635)
T 4g8a_A 11 DKLAA-ANSS-IPESWEPCVEVVPN---ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 82 (635)
T ss_dssp ----------------CCSEEEETT---TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred chhhc-ccCC-CCCCCCCccccCCC---CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEE
Confidence 34555 5433 34456543343222 23477888887 5777665 5899999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSG 180 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~ 180 (639)
|++|++.+..|..|.+|++|++|+|++|+|++..+..|.++++|++|+|++|.++++. +++|++|+|++|++++
T Consensus 83 Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 83 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 9999999988889999999999999999999888889999999999999999998753 6899999999999976
Q ss_pred -cCCccccCCCCCcEEEcccCCCcccCccccCCCCCC----CEEEccCCCCCCCCCcchhh-------------------
Q 041082 181 -AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL----KRLNLYDNYLTSSTPELSFL------------------- 236 (639)
Q Consensus 181 -~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~------------------- 236 (639)
.+|..+..+++|+.|++++|++.+..|..|..+.++ ..++++.|.++..++.....
T Consensus 163 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~ 242 (635)
T 4g8a_A 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 242 (635)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHH
T ss_pred CCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccc
Confidence 468888999999999999999999988887665544 36788888776443211000
Q ss_pred ---ccccCC---------------------------------------------------------cchh----------
Q 041082 237 ---YSLSNC---------------------------------------------------------KYLE---------- 246 (639)
Q Consensus 237 ---~~l~~l---------------------------------------------------------~~l~---------- 246 (639)
..+..+ ..+.
T Consensus 243 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (635)
T 4g8a_A 243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK 322 (635)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG
T ss_pred hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc
Confidence 000000 0000
Q ss_pred --hhccCccEEEeecCccccccch-------------------hhcCCCCCCEEECCCCCCCcc--cc------------
Q 041082 247 --QSSQSLEVFSMFNCNISGGILE-------------------EISNLTNLTAIYLAGNKLNGS--IP------------ 291 (639)
Q Consensus 247 --~~~~~l~~l~l~~n~l~~~~~~-------------------~~~~l~~L~~L~Ls~N~l~~~--~p------------ 291 (639)
.....++.+++.+|.+.+..+. ....+++|+.|+++.|.+... .+
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhh
Confidence 0012455666666655432211 123467788888888876421 12
Q ss_pred -----------ccccCCcCCcEEEccCCcCCCCC-chhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcC-
Q 041082 292 -----------ITLCKLQKLQLLSFVDNKLEGPI-PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKL- 358 (639)
Q Consensus 292 -----------~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l- 358 (639)
..+..+++|+.+++..|+..... +..|..+.+++.++++.|.+.+..|..+..+++|+.|++++|.+
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 23344556666666665554443 35678899999999999999999999999999999999999985
Q ss_pred cccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 359 ISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 359 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
.+..|..|..+++|++|++++|++++..|..+.++++|+.|+|++|+|++...... +....++.++++.+.
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-----KCLNSLQVLDYSLNH 553 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG-----TTCTTCCEEECTTSC
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH-----hCCCCCCEEECCCCc
Confidence 45678889999999999999999999999999999999999999999987543211 123456677777654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=295.32 Aligned_cols=311 Identities=20% Similarity=0.158 Sum_probs=249.1
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+.+. | ++++++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4688999999999874 5 699999999999999999974 4 89999999999999999875 4 899999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC---CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
++|++++. | +..+++|++|++++|.++++. +++|+.|++++|+..+.+ .+..+++|+.|++++|++++. |
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~- 186 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D- 186 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c-
Confidence 99999974 4 899999999999999998864 678999999999776666 477899999999999999885 4
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 209 TFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
++.+++|+.|++++|.+++.. +.. ..+|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~--------l~~-------l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLD--------LNQ-------NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCC--------CTT-------CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred -cccCCCCCEEECcCCcCCeec--------ccc-------CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 889999999999999998752 122 2478899999999998 45 7889999999999999998
Q ss_pred cccccccCCc-------CCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCc--------cccCCCCCCEEeC
Q 041082 289 SIPITLCKLQ-------KLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPT--------CFGNQTSLRILSL 353 (639)
Q Consensus 289 ~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~l 353 (639)
..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 6554444443 45566666666666665 46778889999998887666553 2445567788888
Q ss_pred CCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCc
Q 041082 354 DSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGF 409 (639)
Q Consensus 354 ~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~ 409 (639)
++|++++. + +..+++|+.|++++|++++ ++.|..+++++|.|.|.
T Consensus 326 ~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 326 NNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp TTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred CCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 88888774 2 6777788888888887765 23455566677766653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=281.30 Aligned_cols=302 Identities=25% Similarity=0.359 Sum_probs=208.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.+.. +| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+... +.|.++++|++|+|+
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECc
Confidence 45566666666653 23 25566666666666666653 232 66666666666666665542 246666666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGN 212 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 212 (639)
+|.+++..+ +..+++|++|++++| .....++. +..+++|+.|++++|.+.+..+ +..
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n------------------~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~ 175 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGAN------------------HNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IAN 175 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTC------------------TTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred CCcccCchh--hccCCceeEEECCCC------------------CCcccccc-hhhCCCCcEEEecCCCcCCchh--hcc
Confidence 666654322 555555555555555 33322222 5566667777777766655443 566
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+++|+.|++++|.+++.++ +. ...+++.+++++|.+.+..+ +..+++|+.|++++|.+++..+
T Consensus 176 l~~L~~L~l~~n~l~~~~~-------~~-------~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-------LA-------SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-------GG-------GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCEEEccCCccccccc-------cc-------CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 6777777777776655321 11 12356667777776665433 6778899999999999886544
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCC
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDI 372 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 372 (639)
+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 78889999999999998864 4688899999999999999865 458889999999999999999999999999999
Q ss_pred cEEEcccCCCCCCCccccccccccccccccCCCCC
Q 041082 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 373 ~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
++|++++|++++..| +..++.|+.+|+++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999988766 888999999999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=299.97 Aligned_cols=294 Identities=20% Similarity=0.214 Sum_probs=246.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
+.++.+++.++ .+|..+. +.++.|+|++|++.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56788888887 6787665 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCc
Q 041082 159 NLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232 (639)
Q Consensus 159 ~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 232 (639)
.++.+. +++|++|+|++|++++..|..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 887642 455666666666666655666666666666666666666555555666666666665555544
Q ss_pred chhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 233 ~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 166 -------------------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 166 -------------------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp -------------------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred -------------------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 3345567889999999999999998888899999999999999999888
Q ss_pred CCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccc
Q 041082 313 PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392 (639)
Q Consensus 313 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 392 (639)
.+|..+....+|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 88877777779999999999999766678999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCcCc
Q 041082 393 LKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 393 l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|+.|++++|+|+++..
T Consensus 295 l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CTTCCEEECCSSCCSCCCG
T ss_pred cccCCEEECCCCcCceeCH
Confidence 9999999999999987654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=297.62 Aligned_cols=322 Identities=27% Similarity=0.289 Sum_probs=224.0
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccc-------------ceeeccCCcCCCCCCc
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL-------------LSIYFNNNTLFGEIPE 118 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~ 118 (639)
.+++.|++++|.+ |.+|.+|+++++|++|++++|.+.|.+|.+++++++| +.|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4688899999999 8999999999999999999999999999999999875 999999999886 344
Q ss_pred cccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-C-CCccEEEccCCccCccCCccccCCCCCcEEE
Q 041082 119 ELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-I-PNLENLLLWGNNFSGAIPHFIFNASKLSILE 196 (639)
Q Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 196 (639)
. .++|++|+|++|++++ +|.. +++|++|++++|.++++. + ++|++|++++|++++ +| .+.++++|++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 2 3789999999999997 5643 478999999999998753 3 689999999999986 67 588899999999
Q ss_pred cccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh----------hhccCccEEEeecCcccccc
Q 041082 197 LQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE----------QSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~----------~~~~~l~~l~l~~n~l~~~~ 266 (639)
+++|++++ +|.. .++|++|++++|.+++.+ .+ ..+.+++.+. ....+++.|++++|.+. .+
T Consensus 160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~---~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-EL---QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CC---TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SC
T ss_pred CCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cc---cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cc
Confidence 99998886 3443 357888888888887753 22 2222222221 22347888999998888 45
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc--cCCccc--
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG--SIPTCF-- 342 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~-- 342 (639)
| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|.. +++|+.|++++|.+++ ..|..+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred c-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCE
Confidence 6 47888899999999998885 4432 3677888888888776 3332 3566777777776665 222211
Q ss_pred -----------cCC-CCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 343 -----------GNQ-TSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 343 -----------~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
..+ ++|++|++++|++.+ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|+++++.
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCC
Confidence 122 478889999998887 4443 5789999999999874 565 4788999999999998843
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=292.48 Aligned_cols=296 Identities=28% Similarity=0.390 Sum_probs=259.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..| ++++++|++|+|++|.+.+..| +..+++|++|++++|.+.+. | .++.+++|++|++
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeec
Confidence 478999999999987655 9999999999999999996533 99999999999999998864 4 5999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
+ |.+.+.. .+.++++|++|++++|.++.+ .+++|+.|++++|++++..| +..+++|+.|++++|.+.+.
T Consensus 164 ~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 164 G-NQVTDLK--PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp E-ESCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred C-CcccCch--hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--
Confidence 7 5665443 389999999999999999875 37899999999999998766 67799999999999999875
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
..+..+++|+.|++++|.+++.++ +.. ..+|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~-------~~~-------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP-------LSG-------LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-------GTT-------CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred hhhhcCCCCCEEECCCCccccchh-------hhc-------CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 358899999999999999987542 112 3478999999999987554 889999999999999999
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+..| +.
T Consensus 301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence 7655 7889999999999999998776 78899999999999999975 478899999999999999999887 88
Q ss_pred cCCCCcEEEcccCCCCC
Q 041082 368 NLKDILYLNLSSNFFIS 384 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~ 384 (639)
.+++|+.|++++|.+++
T Consensus 373 ~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeccCCcccC
Confidence 99999999999999987
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=291.78 Aligned_cols=306 Identities=19% Similarity=0.206 Sum_probs=258.8
Q ss_pred ccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCcccc
Q 041082 66 STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145 (639)
Q Consensus 66 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 145 (639)
+..+..++++++|++|++++|.+++ +| .+..+++|++|++++|++++. | ++.+++|++|+|++|++++. | +.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3445567889999999999999996 46 799999999999999999885 4 89999999999999999975 3 89
Q ss_pred CCCCCCEEecCCCCCCCCC---CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEcc
Q 041082 146 NLSSLSDLDLSHNNLTDVQ---IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222 (639)
Q Consensus 146 ~l~~L~~L~Ls~N~l~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 222 (639)
++++|++|++++|.++++. +++|+.|++++|++++. + +..+++|+.|++++|...+.+ .++.+++|++|+++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 9999999999999999864 67999999999999984 3 788999999999999766655 48899999999999
Q ss_pred CCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcE
Q 041082 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQL 302 (639)
Q Consensus 223 ~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 302 (639)
+|++++.+ +.. ..+++.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.
T Consensus 179 ~n~l~~l~--------l~~-------l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 179 FNKITELD--------VSQ-------NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp SSCCCCCC--------CTT-------CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred CCccceec--------ccc-------CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 99998753 112 24788999999999985 47889999999999999998 56 788999999
Q ss_pred EEccCCcCCCCCchhhcCCC-------CCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh--------hh
Q 041082 303 LSFVDNKLEGPIPYEFCRLA-------SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST--------LW 367 (639)
Q Consensus 303 L~l~~N~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--------~~ 367 (639)
|++++|++++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. +.
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99999999987665554444 45666667776666666 567899999999999987776643 45
Q ss_pred cCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 368 NLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
.+++|++|++++|++++. .+..++.|+.||+++|+|+++.
T Consensus 316 ~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCT
T ss_pred hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCcc
Confidence 567899999999999884 3889999999999999998853
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=290.40 Aligned_cols=304 Identities=20% Similarity=0.200 Sum_probs=265.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..++.|+++++.++...+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+.+..|..|+++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 35778999999988655556889999999999999999888889999999999999999999999999999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
++|+++...+..|.++++|++|++++|.++++ .+++|+.|++++|++++.. +..+++|+.|++++|.+.+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence 99999966666679999999999999999875 3689999999999998652 55678999999999998754
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCC
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 285 (639)
...++|+.|++++|.++..+.. ...+++.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred -----CCCCcceEEECCCCeeeecccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc
Confidence 3456899999999999865321 124789999999999874 578899999999999999
Q ss_pred CCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh
Q 041082 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365 (639)
Q Consensus 286 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 365 (639)
+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++...
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--- 334 (390)
T 3o6n_A 260 LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--- 334 (390)
T ss_dssp CCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---
T ss_pred CCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---
Confidence 999889999999999999999999986 4666778999999999999998 46667888999999999999998763
Q ss_pred hhcCCCCcEEEcccCCCCCC
Q 041082 366 LWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 366 ~~~l~~L~~L~ls~N~l~~~ 385 (639)
+..+++|+.|++++|++...
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred chhhccCCEEEcCCCCccch
Confidence 66788999999999998653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=307.81 Aligned_cols=326 Identities=19% Similarity=0.197 Sum_probs=279.1
Q ss_pred cccCCCCCCCCcC----ccceecCC------C----------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC
Q 041082 29 LAKNWNTSSTVCH----WTGVSCDV------R----------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88 (639)
Q Consensus 29 l~~~w~~~~~~c~----w~gv~c~~------~----------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l 88 (639)
+++ |.++.+||. |.++.|+. . -..++.++++++.++...+..|+++++|++|+|++|.+
T Consensus 9 l~~-~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 9 VKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp --C-CCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred ccC-CCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 455 877666663 66655442 1 02467899999999876666788999999999999999
Q ss_pred CccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC-----
Q 041082 89 SGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----- 163 (639)
Q Consensus 89 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----- 163 (639)
++..|..|..+++|+.|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.++++
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 998888999999999999999999999999999999999999999999977777789999999999999999875
Q ss_pred -CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCC
Q 041082 164 -QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNC 242 (639)
Q Consensus 164 -~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l 242 (639)
.+++|+.|+|++|.+++.. +..+++|+.|++++|.+.+. ...++|+.|++++|.++..++..
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--------- 230 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--------- 230 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---------
T ss_pred hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---------
Confidence 3689999999999998753 45678999999999998764 34578999999999998653321
Q ss_pred cchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCC
Q 041082 243 KYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322 (639)
Q Consensus 243 ~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 322 (639)
..+|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++ +|..+..++
T Consensus 231 ------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 231 ------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 2478999999999997 4778999999999999999999999999999999999999999987 566778899
Q ss_pred CCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCC
Q 041082 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 323 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
+|+.|+|++|.++ .+|..+..+++|++|++++|.+.+.. +..++.|+.|++++|++.+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9999999999999 57778889999999999999998864 56778999999999998754
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=275.96 Aligned_cols=287 Identities=21% Similarity=0.264 Sum_probs=179.7
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+|++|
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 34556666665 4565554 57888899888888777777888888888888888888877888888888888888888
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcc--cCccccCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD--LIPNTFGN 212 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~ 212 (639)
+++ .+|..+. + +|++|++++|++++..+..+..+++|+.|++++|.+.. ..+..|..
T Consensus 111 ~l~-~l~~~~~--~------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 111 QLK-ELPEKMP--K------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp CCS-BCCSSCC--T------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred cCC-ccChhhc--c------------------cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 887 3444332 3 45555555556655666677888888888888888853 66777888
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+++|++|++++|.++..+... .++|+.|++++|.+++..|.
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~---------------------------------------~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGL---------------------------------------PPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSC---------------------------------------CTTCSEEECTTSCCCEECTG
T ss_pred CCCcCEEECCCCccccCCccc---------------------------------------cccCCEEECCCCcCCccCHH
Confidence 889999999888887643211 02344444444444444444
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc----
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN---- 368 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~---- 368 (639)
.+..+++|+.|++++|++++..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|+++++.+..|..
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 4444455555555555554444444555555555555555554 34444555555555555555555544444432
Q ss_pred --CCCCcEEEcccCCCCC--CCccccccccccccccccCCC
Q 041082 369 --LKDILYLNLSSNFFIS--PLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 369 --l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~l~ls~N~ 405 (639)
...+..+++++|++.. ..|..+..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2455666666666542 345566666667777776663
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=279.32 Aligned_cols=286 Identities=20% Similarity=0.243 Sum_probs=176.0
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|+.|++++|.+.+..|..|+++++|++|+|++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 44566666665 4555553 56777777777777666666777777777777777776666666777777777777777
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc--ccCccccCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF--DLIPNTFGN 212 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~ 212 (639)
+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+. +..|..|..
T Consensus 113 ~l~-~l~~~~~--------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 113 HLV-EIPPNLP--------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp CCC-SCCSSCC--------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred cCC-ccCcccc--------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 666 3333322 34555555555665555666778888888888888885 366777777
Q ss_pred CCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccc
Q 041082 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 292 (639)
+ +|++|++++|.+++.+... .++|+.|++++|.+++..+.
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~---------------------------------------~~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL---------------------------------------PETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS---------------------------------------CSSCSCCBCCSSCCCCCCTT
T ss_pred C-ccCEEECcCCCCCccCccc---------------------------------------cCCCCEEECCCCcCCccCHH
Confidence 7 8888888888887643211 03455555555555555445
Q ss_pred cccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhc----
Q 041082 293 TLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWN---- 368 (639)
Q Consensus 293 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~---- 368 (639)
.+..+++|+.|++++|++.+..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 5555555555555555555555555555556666666666555 44555555666666666666665555554433
Q ss_pred --CCCCcEEEcccCCCC--CCCccccccccccccccccCCC
Q 041082 369 --LKDILYLNLSSNFFI--SPLPLEIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 369 --l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~l~ls~N~ 405 (639)
...|+.+++++|++. ...|..+..++.|+.+++++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 244566666666655 4455566666666666666653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=274.43 Aligned_cols=277 Identities=25% Similarity=0.356 Sum_probs=202.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++..+ +..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEEC
Confidence 478999999999986433 9999999999999999985 44 69999999999999999986544 899999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCC----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|.....++ .+..+++|++|++++|.++.+. +++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 216 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch
Confidence 9997665554 4889999999999998887642 5566666666666654332 4555666666666666655433
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
+..+++|++|++++|.+++. .+ +..+++|+.|++++|.++
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~------------------------------------~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDL------------------------------------SP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCC------------------------------------GG--GTTCTTCCEEECCSSCCC
T ss_pred --hhcCCcCCEEEccCCccCCC------------------------------------cc--hhcCCCCCEEECCCCccC
Confidence 55556666666666555432 22 556667777777777776
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| +.
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 53 3466677777777777777654 346777777888888887777777777777788888888888777666 66
Q ss_pred cCCCCcEEEcccCCCC
Q 041082 368 NLKDILYLNLSSNFFI 383 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~ 383 (639)
.+++|++|++++|.++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 7778888888887763
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-32 Score=281.54 Aligned_cols=249 Identities=27% Similarity=0.381 Sum_probs=166.3
Q ss_pred CCCCEEeccCCcCCc--cCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 76 SSLQTLDLSFNWFSG--SIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
.++++|+|++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 478999999999998 8999999999999999995 9999999999999999999999999999888888887666555
Q ss_pred EecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCC-CCCEEEccCCCCCCCCC
Q 041082 153 LDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI-NLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 153 L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~ 231 (639)
|+|++ |++++.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|.+++
T Consensus 130 L~Ls~------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--- 188 (313)
T 1ogq_A 130 LDFSY------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--- 188 (313)
T ss_dssp EECCS------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---
T ss_pred EeCCC------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---
Confidence 55544 444456677777777777777777777766676666655 55555555554432
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
.+|..+..++ |+.|++++|.+++..|..+..+++|+.|++++|+++
T Consensus 189 ---------------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 189 ---------------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ---------------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ---------------------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 2333344443 555666665555555555555555555555555554
Q ss_pred CCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccc
Q 041082 312 GPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIG 391 (639)
Q Consensus 312 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 391 (639)
+.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. .
T Consensus 235 ~~~~~-------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 235 FDLGK-------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp CBGGG-------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred eecCc-------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 44333 344455555555555555555555555555555555555555555544 5
Q ss_pred cccccccccccCCC
Q 041082 392 NLKVLVGIDLSMNN 405 (639)
Q Consensus 392 ~l~~L~~l~ls~N~ 405 (639)
.++.|+.+++++|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 55666666666665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=268.62 Aligned_cols=286 Identities=21% Similarity=0.259 Sum_probs=190.4
Q ss_pred CCCCcCccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceee
Q 041082 36 SSTVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 106 (639)
..+.|.|..+.|.... .+++.|++++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 3456889999997531 3689999999999988888999999999999999999998899999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFI 186 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~ 186 (639)
+++|.+. .+|..+. ++|++|+|++|++++..+..|.++++|+.|++++|.++.. +..|..+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~ 169 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------GFEPGAF 169 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------GSCTTSS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------CCCcccc
Confidence 9999998 5666555 8999999999999988777899999999999988887631 1223333
Q ss_pred cCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccccc
Q 041082 187 FNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 187 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~ 266 (639)
..+ +|+.|++++|.+.+. |..+. ++|++|++++|.+++.+
T Consensus 170 ~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~------------------------------------ 209 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIE------------------------------------ 209 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCC------------------------------------
T ss_pred cCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccC------------------------------------
Confidence 333 455555555555442 22221 45555555555544321
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccC--
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN-- 344 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-- 344 (639)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..|..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 112233444455555555555444444555555555555555554 34444555555555555555555554444433
Q ss_pred ----CCCCCEEeCCCCcCc--ccchhhhhcCCCCcEEEcccCC
Q 041082 345 ----QTSLRILSLDSNKLI--SIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 345 ----l~~L~~L~l~~N~l~--~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
..+|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245677777777766 5666677777777777777664
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=264.05 Aligned_cols=286 Identities=23% Similarity=0.261 Sum_probs=195.7
Q ss_pred CCCcCccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeec
Q 041082 37 STVCHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYF 107 (639)
Q Consensus 37 ~~~c~w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 107 (639)
.+.|.|+.+.|+.. ...++.|++++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45678999999742 236889999999999887888999999999999999999888999999999999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCcccc
Q 041082 108 NNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIF 187 (639)
Q Consensus 108 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~ 187 (639)
++|.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++.. +..+..+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~~ 168 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------GIENGAFQ 168 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------GBCTTGGG
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------CcChhhcc
Confidence 999997 4666554 7999999999999988888899999999999988887641 13344455
Q ss_pred CCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccc
Q 041082 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL 267 (639)
Q Consensus 188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~ 267 (639)
.+++|+.|++++|.+... |..+ .++|++|++++|.+++.. +
T Consensus 169 ~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~------------------------------------~ 209 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVD------------------------------------A 209 (330)
T ss_dssp GCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEEC------------------------------------T
T ss_pred CCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccC------------------------------------H
Confidence 555666666666665543 2222 155666666665554321 2
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccC---
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGN--- 344 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--- 344 (639)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+..|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 23334445555555555555444445555555555555555555 44445555556666666666665554444432
Q ss_pred ---CCCCCEEeCCCCcCcc--cchhhhhcCCCCcEEEcccCC
Q 041082 345 ---QTSLRILSLDSNKLIS--IIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 345 ---l~~L~~L~l~~N~l~~--~~p~~~~~l~~L~~L~ls~N~ 381 (639)
..+++.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2567777777777753 566777777788888887774
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=272.05 Aligned_cols=304 Identities=24% Similarity=0.269 Sum_probs=229.3
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|++.+ +| +|+++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 467888888888887 6643 3788899999998875 4432 2689999999999987 77 5999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|++++ +|..+ .+|++|++++|.++++ .+++|+.|++++|++++ +|... ++|+.|++++|.+. .+|
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc
Confidence 9999986 55543 5899999999999875 37899999999999986 45432 58999999999998 456
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
. ++.+++|++|++++|++++.+.. ..+++.|++++|.+.+ +|.. +++|+.|++++|.++
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~l~~~----------------~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKTLPDL----------------PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSSCCSC----------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred c-cCCCCCCCEEECCCCcCCccccc----------------ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 4 89999999999999999875421 2478899999999887 4443 478999999999998
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCC-CCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL-ASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 366 (639)
+. |.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|++|++++|+++++ |.
T Consensus 291 ~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~-- 354 (454)
T 1jl5_A 291 GL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE-- 354 (454)
T ss_dssp EE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC--
T ss_pred cc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc--
Confidence 62 211 26899999999998862 2 23 589999999999986 5554 57899999999999864 44
Q ss_pred hcCCCCcEEEcccCCCCC--CCccccccc-------------cccccccccCCCCCCcCcc
Q 041082 367 WNLKDILYLNLSSNFFIS--PLPLEIGNL-------------KVLVGIDLSMNNFSGFGSI 412 (639)
Q Consensus 367 ~~l~~L~~L~ls~N~l~~--~~p~~~~~l-------------~~L~~l~ls~N~l~g~g~v 412 (639)
.+++|++|++++|++++ .+|..+..+ ++|+.||+++|++++++.+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i 414 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI 414 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc
Confidence 47889999999999998 788888887 7899999999999986543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=266.09 Aligned_cols=281 Identities=22% Similarity=0.243 Sum_probs=185.3
Q ss_pred CCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC
Q 041082 33 WNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112 (639)
Q Consensus 33 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 112 (639)
|......|.|.|+ |+. ++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|+.|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKG----------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EEC----------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-eeC----------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 6666788999887 653 456665 4676665 4899999999999977777899999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC-------CCCccEEEccCCc-cCccCCc
Q 041082 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------IPNLENLLLWGNN-FSGAIPH 184 (639)
Q Consensus 113 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------l~~L~~L~L~~N~-l~~~~p~ 184 (639)
.+..|..|.++++|++|+|++|++++..+..+.++++|++|+|++|.++.+. +++|++|++++|+ +.+..|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 9888888999999999999999998766666888888888888888876532 4455666666552 4444455
Q ss_pred cccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccc
Q 041082 185 FIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264 (639)
Q Consensus 185 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~ 264 (639)
.+..+++|+.|++++|.+.+..|..|+.+++|++|++++|.++..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----------------------------------- 213 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL----------------------------------- 213 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-----------------------------------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-----------------------------------
Confidence 555566666666666666655555566666666666655554321
Q ss_pred ccchhhcCCCCCCEEECCCCCCCcccccccc---CCcCCcEEEccCCcCCC----CCchhhcCCCCCcEEECCCCcCccc
Q 041082 265 GILEEISNLTNLTAIYLAGNKLNGSIPITLC---KLQKLQLLSFVDNKLEG----PIPYEFCRLASLYELDLSGNKLSGS 337 (639)
Q Consensus 265 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 337 (639)
....+..+++|+.|++++|.+++..+..+. ....++.++++++.+.+ .+|..+..+++|+.|++++|+++..
T Consensus 214 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 214 -LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp -HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred -hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 111223355566666666665544333221 23455666666666554 2455666777777777777777644
Q ss_pred CCccccCCCCCCEEeCCCCcCcccch
Q 041082 338 IPTCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 338 ~p~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
.+..|..+++|++|++++|.+.+..|
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 33345667777777777777666544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-33 Score=299.32 Aligned_cols=351 Identities=20% Similarity=0.171 Sum_probs=278.1
Q ss_pred CcEEEEEeCCCCCcccCCcC-CCCCCCCCEEeccCCcCCc----cCCccccCCcccceeeccCCcCCCCCCccc-cCCC-
Q 041082 52 YRVTTLNISGLSLTSTIPSE-LGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTLFGEIPEEL-GNLA- 124 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~- 124 (639)
.+++.|+|+++.++...... +..+++|++|+|++|.+.+ .+|..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 36899999999987544333 7788999999999999985 467788889999999999999876555443 3455
Q ss_pred ---CCcEEecccccCcc----ccCccccCCCCCCEEecCCCCCCCC-----------CCCCccEEEccCCccCcc----C
Q 041082 125 ---ELETLWLQNNFLTG----TIHSSIFNLSSLSDLDLSHNNLTDV-----------QIPNLENLLLWGNNFSGA----I 182 (639)
Q Consensus 125 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~-----------~l~~L~~L~L~~N~l~~~----~ 182 (639)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++. ..++|++|+|++|++++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 5688899999999999999998752 245799999999999874 3
Q ss_pred CccccCCCCCcEEEcccCCCcccCccccC-----CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEe
Q 041082 183 PHFIFNASKLSILELQKNSFFDLIPNTFG-----NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSM 257 (639)
Q Consensus 183 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l 257 (639)
+..+..+++|+.|++++|.+....+..+. ..++|++|++++|.++..... .....+ ....+|+.|++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l-------~~~~~L~~L~L 234 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIV-------ASKASLRELAL 234 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHH-------HHCTTCCEEEC
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHH-------HhCCCccEEec
Confidence 56667789999999999998765444443 367999999999988753100 011111 12457899999
Q ss_pred ecCccccccch-----hhcCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcCCCCCchhhcC-----CCC
Q 041082 258 FNCNISGGILE-----EISNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLEGPIPYEFCR-----LAS 323 (639)
Q Consensus 258 ~~n~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----l~~ 323 (639)
++|.+.+.... .+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 99998764322 223588999999999999864 5677778999999999999987654444433 369
Q ss_pred CcEEECCCCcCccc----CCccccCCCCCCEEeCCCCcCcccchhhhhc-----CCCCcEEEcccCCCCC----CCcccc
Q 041082 324 LYELDLSGNKLSGS----IPTCFGNQTSLRILSLDSNKLISIIPSTLWN-----LKDILYLNLSSNFFIS----PLPLEI 390 (639)
Q Consensus 324 L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~ 390 (639)
|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.++. .+|..+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 99999999999865 4666778899999999999998876665543 6799999999999986 778888
Q ss_pred ccccccccccccCCCCCCcC
Q 041082 391 GNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 391 ~~l~~L~~l~ls~N~l~g~g 410 (639)
..+++|+.||+++|+|++.|
T Consensus 395 ~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHCCCCCEEECCSSSCCHHH
T ss_pred HhCCCccEEECCCCCCCHHH
Confidence 89999999999999998654
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=260.94 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=150.0
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.+. ++..||||++........+.|..|+++++. +|||||++|+|.
T Consensus 24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~ 103 (299)
T 4asz_A 24 GAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLN 103 (299)
T ss_dssp --CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred CCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHH
Confidence 469999999874 367899999987666666789999988543 799999999999
Q ss_pred hccccC------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 461 KCLYSS------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 461 ~~l~~~------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++|+.. ...++|.++.+|+.|||+||+||| +.+|+||||||+|||+++++.+||+|||+|+....
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 180 (299)
T 4asz_A 104 KFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYS 180 (299)
T ss_dssp HHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTG
T ss_pred HHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEECCcccceecCC
Confidence 999642 246999999999999999999999 66899999999999999999999999999997654
Q ss_pred cCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecc
Q 041082 529 EDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVN 581 (639)
Q Consensus 529 ~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 581 (639)
..... .. ...+.++||| | | |+.|..+. ....+...+... ..
T Consensus 181 ~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~--~~~~~~~~i~~~---~~------- 248 (299)
T 4asz_A 181 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL--SNNEVIECITQG---RV------- 248 (299)
T ss_dssp GGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CHHHHHHHHHHT---CC-------
T ss_pred CCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHcC---CC-------
Confidence 33210 00 0112378888 6 6 78777532 111222222211 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+..+...+.+++.+||+.+|++||||.||++.|+++.++
T Consensus 249 --------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 249 --------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 011223445678899999999999999999999999988654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=254.31 Aligned_cols=288 Identities=22% Similarity=0.243 Sum_probs=205.1
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC--
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG-- 114 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-- 114 (639)
.+.|.|.+|.|+.. +++ .+|..+. ++|++|+|++|.++...+..|.++++|+.|++++|.+..
T Consensus 4 ~C~C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCeeCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence 35678888888642 343 4565554 689999999999985544557899999999999998873
Q ss_pred CCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCC-ccccCCCCCc
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP-HFIFNASKLS 193 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~ 193 (639)
..|..+..+++|++|+|++|.++. +|..+..+++|++|++++|.++++ .+ ..+..+++|+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~------------------~~~~~~~~l~~L~ 129 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM------------------SEFSVFLSLRNLI 129 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESS------------------TTTTTTTTCTTCC
T ss_pred CcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccc------------------ccchhhhhccCCC
Confidence 336777788999999999999874 566677877777777777665532 22 3566677788
Q ss_pred EEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCC
Q 041082 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNL 273 (639)
Q Consensus 194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l 273 (639)
.|++++|.+.+..+..|..+++|++|++++|.+++. ..|..+..+
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------------------~~~~~~~~l 174 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------------------------------FLPDIFTEL 174 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-----------------------------------EECSCCTTC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccc-----------------------------------cchhHHhhC
Confidence 888888887777777777777777777777765420 124445667
Q ss_pred CCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCC-CCCEEe
Q 041082 274 TNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT-SLRILS 352 (639)
Q Consensus 274 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ 352 (639)
++|++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|..+..++ +|++|+
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 7788888888888777777777888888888888888877777788888888888888888888888888774 888888
Q ss_pred CCCCcCcccchh--hhhcCCCCcEEEcccCCCCCCCccccccc
Q 041082 353 LDSNKLISIIPS--TLWNLKDILYLNLSSNFFISPLPLEIGNL 393 (639)
Q Consensus 353 l~~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 393 (639)
+++|.+.+..+. ....+...+.+.+..+.+....|..+.+.
T Consensus 255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred ccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 888888764321 11112223334444555555556555543
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-30 Score=262.50 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=144.0
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.+. ++..||||++........+.|..|+++++. +|||||++|+|.
T Consensus 52 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~ 131 (329)
T 4aoj_A 52 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLN 131 (329)
T ss_dssp CSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred CCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHH
Confidence 569999999875 368899999987666666789999988543 799999999999
Q ss_pred hccccC--------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 461 KCLYSS--------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 461 ~~l~~~--------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++++.. ...++|.++++|+.+||+||+||| ..+|+||||||+|||+|+++.+||+|||+|+.+
T Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~ 208 (329)
T 4aoj_A 132 RFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208 (329)
T ss_dssp HHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-----
T ss_pred HHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcEEEcccccceec
Confidence 998652 135899999999999999999999 678999999999999999999999999999976
Q ss_pred cccCCC--cccc---------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeee
Q 041082 527 LKEDQS--FTQN---------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579 (639)
Q Consensus 527 ~~~~~~--~~~~---------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d 579 (639)
...... .+.. ..+.++||| | | |+.|..+. ....+.+.+....
T Consensus 209 ~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~--~~~~~~~~i~~g~--------- 277 (329)
T 4aoj_A 209 YSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL--SNTEAIDCITQGR--------- 277 (329)
T ss_dssp -----------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS--CHHHHHHHHHHTC---------
T ss_pred cCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC--CHHHHHHHHHcCC---------
Confidence 543211 0000 122378888 6 6 77776532 1112222222110
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.+.+..+...+.+|+.+||+.+|++||||.||+++|+.+.+.
T Consensus 278 ---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 278 ---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 0111223445678899999999999999999999999988653
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=259.82 Aligned_cols=199 Identities=23% Similarity=0.411 Sum_probs=145.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.+||.||+|.+. .+..||||++..... ...+.|..|+.+++. +|||||++|+|
T Consensus 37 G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L 116 (308)
T 4gt4_A 37 DRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDL 116 (308)
T ss_dssp CSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBH
T ss_pred CCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcH
Confidence 569999999874 457899999865432 234678888888543 79999999999
Q ss_pred hhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 460 EKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 460 ~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.++|+.. ...++|.++.+|+.+||+||+||| +.+|+||||||+|||+|+++.+||+|||+|+
T Consensus 117 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar 193 (308)
T 4gt4_A 117 HEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKISDLGLFR 193 (308)
T ss_dssp HHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCSCCBC
T ss_pred HHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCCEEECCcccce
Confidence 9998542 135899999999999999999999 6679999999999999999999999999999
Q ss_pred cccccCCC--cccc---------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCccee
Q 041082 525 LLLKEDQS--FTQN---------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEV 577 (639)
Q Consensus 525 ~~~~~~~~--~~~~---------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 577 (639)
.+...+.. .+.. ..+.++||| | | |+.|+.+. ....+.+.+.. ...
T Consensus 194 ~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~--~~~~~~~~i~~---~~~--- 265 (308)
T 4gt4_A 194 EVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY--SNQDVVEMIRN---RQV--- 265 (308)
T ss_dssp GGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC--CHHHHHHHHHT---TCC---
T ss_pred eccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc---CCC---
Confidence 77543321 0111 112378888 6 6 67776532 11222222221 110
Q ss_pred eeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 578 VDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 578 ~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+.+|...+.+|+.+||+.+|++||||.||+++|+.+
T Consensus 266 ------------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 266 ------------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp ------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ------------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 112234556688899999999999999999999999854
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=271.96 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=210.5
Q ss_pred ccccCCCCCCCCcCccceec------CCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 28 FLAKNWNTSSTVCHWTGVSC------DVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 28 ~l~~~w~~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
..+. |....++|.|.|..| .+....++.|++++++++ .+|..+. ++|++|+|++|.++ .+|. .+++
T Consensus 11 ~w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 11 VWSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp HHHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCC
Confidence 4455 887888999976422 211235889999999998 6787776 89999999999998 5776 5789
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC--CCCccEEEccCCccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ--IPNLENLLLWGNNFS 179 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--l~~L~~L~L~~N~l~ 179 (639)
|+.|+|++|++++ +|. .+++|++|+|++|++++. |. .+++|+.|++++|.|+.++ +++|++|+|++|+++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC
Confidence 9999999999875 555 779999999999999864 43 6788999999999998864 578999999999888
Q ss_pred ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeec
Q 041082 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN 259 (639)
Q Consensus 180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~ 259 (639)
+ +|. .+++|+.|++++|.++++ | ..+++|+.|++++|.+++.+.. ..+|+.|++++
T Consensus 155 ~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~----------------~~~L~~L~L~~ 210 (622)
T 3g06_A 155 S-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPTL----------------PSELYKLWAYN 210 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCS
T ss_pred C-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCCc----------------cchhhEEECcC
Confidence 5 343 246788999999988774 3 4568888999998888764321 13566777777
Q ss_pred CccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC
Q 041082 260 CNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339 (639)
Q Consensus 260 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 339 (639)
|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|+++. +|. .+++|+.|+|++|.++ .+|
T Consensus 211 N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 211 NRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp SCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC
T ss_pred Ccccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC
Confidence 77664 332 23567777777777764 34 344667777777777664 333 4566777777777776 456
Q ss_pred ccccCCCCCCEEeCCCCcCcccchhhhhcC
Q 041082 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNL 369 (639)
Q Consensus 340 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 369 (639)
..|..+++|+.|++++|.+++..|..+..+
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 666677777777777777776666655443
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-30 Score=257.39 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=147.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.+.+ .+|||++.... ....+.|..|+.+++. +|||||++|+|.++|+.
T Consensus 47 G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~gGsL~~~l~~ 124 (307)
T 3omv_A 47 GSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHV 124 (307)
T ss_dssp CSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSSCBHHHHHHT
T ss_pred CCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCCCCHHHHHhh
Confidence 5699999998764 58999886433 3345678888888543 79999999999999987
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c-----c----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-----T---- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-----~---- 534 (639)
....++|.++.+|+.|||+||+||| +.+|+||||||+|||+|+++.+||+|||+|+........ . +
T Consensus 125 ~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ym 201 (307)
T 3omv_A 125 QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWM 201 (307)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCcc
Confidence 6667999999999999999999999 568999999999999999999999999999876532211 0 0
Q ss_pred --cc-------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 --QN-------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 --~~-------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.. ..+.++||| | ||+.|+.+.- ....+...+... ...|.+. ..+.++
T Consensus 202 APE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~-~~~~~~~~~~~~-------~~~p~~~-------~~~~~~ 266 (307)
T 3omv_A 202 APEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN-NRDQIIFMVGRG-------YASPDLS-------KLYKNC 266 (307)
T ss_dssp CHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHTT-------CCCCCST-------TSCTTS
T ss_pred CHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC-hHHHHHHHHhcC-------CCCCCcc-------cccccc
Confidence 00 113368888 6 8888875321 111111111111 1111111 112234
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+.+++.+||+.+|++||||.||+++|+.++..+
T Consensus 267 ~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 267 PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999886543
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=254.03 Aligned_cols=212 Identities=22% Similarity=0.258 Sum_probs=145.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH------------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM------------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------~~Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.+ .|..||||+++...... ..+..|+..+ ..+|||||++|+|.++
T Consensus 14 G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~-~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~ 91 (303)
T 3hmm_A 14 GRFGEVWRGKW-RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY 91 (303)
T ss_dssp CSSSEEEEEEE-TTEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEE-CCEEEEEEEECccchhh-HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHH
Confidence 57999999998 48899999997543221 1222333321 1379999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
++. ..++|..+.+|+.++|+||+|||+.+ .++|+||||||+|||+|.++++||+|||+|+........
T Consensus 92 l~~--~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~ 169 (303)
T 3hmm_A 92 LNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAP 169 (303)
T ss_dssp HHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-
T ss_pred HHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeec
Confidence 975 35899999999999999999999652 569999999999999999999999999999876543211
Q ss_pred ----cc------cc----------ccccccccc--c-------CCCCCCCccCC----------CccchHHHHHhhCCCC
Q 041082 533 ----FT------QN----------TNTCHHRIY--G-------TRRNPQMNFFS----------GEMTLKSWVNDLLPIS 573 (639)
Q Consensus 533 ----~~------~~----------~~~~~~dvy--G-------tg~~p~~~~~~----------~~~~l~~~~~~~~~~~ 573 (639)
.+ .. ..+.++||| | ||+.|...... ......++.......
T Consensus 170 ~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~- 248 (303)
T 3hmm_A 170 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ- 248 (303)
T ss_dssp ----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS-
T ss_pred ccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcc-
Confidence 00 00 012267888 6 66655432110 111122222111111
Q ss_pred cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 574 VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 574 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.++|.+... ....++...+.+|+.+||+.+|++||||.||+++|+++.+.
T Consensus 249 ---~~rp~~p~~-----~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 249 ---KLRPNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp ---CCCCCCCGG-----GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---cCCCCCCcc-----ccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 122222111 11235677889999999999999999999999999988653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=260.12 Aligned_cols=244 Identities=24% Similarity=0.218 Sum_probs=157.7
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
++.++.+++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|++
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 445555555 4565554 5788888888888887788888888888888888888877778888888888888888888
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCcccCccccCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDLIPNTFGNLIN 215 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~ 215 (639)
++..+..|.++++|++|+|++|.++ ...+..|.++++|+.|++++| .+....+..|..+++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIE------------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCC------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred CccChhhhcccCCCCEEECCCCCcc------------------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 8666666777666666666665554 233445666677777777763 344444445667777
Q ss_pred CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccccc
Q 041082 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295 (639)
Q Consensus 216 L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 295 (639)
|++|+|++|.+++.+ .+..+++|+.|+|++|.+++..|..|.
T Consensus 198 L~~L~L~~n~l~~~~--------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMP--------------------------------------NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp CCEEECTTSCCSSCC--------------------------------------CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred CCEEECCCCcccccc--------------------------------------cccccccccEEECcCCcCcccCccccc
Confidence 777777777665421 123345566666666666655555555
Q ss_pred CCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 041082 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359 (639)
Q Consensus 296 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 359 (639)
.+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5556666666666555555555555556666666666655555555555555555555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-31 Score=284.49 Aligned_cols=326 Identities=20% Similarity=0.249 Sum_probs=258.0
Q ss_pred cEEEEEeCCCCCcc----cCCcCCCCCCCCCEEeccCCcCCccCCcccc-CCc----ccceeeccCCcCCC----CCCcc
Q 041082 53 RVTTLNISGLSLTS----TIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMS----SLLSIYFNNNTLFG----EIPEE 119 (639)
Q Consensus 53 ~v~~L~L~~~~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~----~L~~L~L~~N~l~~----~~p~~ 119 (639)
+++.|+++++.++. .++..+..+++|++|+|++|.+.+..+..+. .++ +|++|++++|.+.. .+|..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 67899999999874 4567788899999999999999865444443 355 69999999999984 56889
Q ss_pred ccCCCCCcEEecccccCccccCcccc-----CCCCCCEEecCCCCCCCC----------CCCCccEEEccCCccCccCCc
Q 041082 120 LGNLAELETLWLQNNFLTGTIHSSIF-----NLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNFSGAIPH 184 (639)
Q Consensus 120 ~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l~~~~p~ 184 (639)
+..+++|++|+|++|.+++..+..+. ..++|++|+|++|.+++. .+++|+.|++++|.++...+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 99999999999999999765444332 367899999999999873 258999999999998765444
Q ss_pred ccc-----CCCCCcEEEcccCCCccc----CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEE
Q 041082 185 FIF-----NASKLSILELQKNSFFDL----IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF 255 (639)
Q Consensus 185 ~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l 255 (639)
.+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.++...... .... +.....+++.|
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~------~~~~~~~L~~L 261 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE-LCPG------LLHPSSRLRTL 261 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH-HHHH------HTSTTCCCCEE
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH-HHHH------HhcCCCCceEE
Confidence 443 366999999999999874 4667788999999999999886421000 0000 01123589999
Q ss_pred EeecCccccc----cchhhcCCCCCCEEECCCCCCCccccccccC-----CcCCcEEEccCCcCCCC----CchhhcCCC
Q 041082 256 SMFNCNISGG----ILEEISNLTNLTAIYLAGNKLNGSIPITLCK-----LQKLQLLSFVDNKLEGP----IPYEFCRLA 322 (639)
Q Consensus 256 ~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~~----~p~~~~~l~ 322 (639)
++++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 9999999875 5677788999999999999997654444433 26999999999999865 466777889
Q ss_pred CCcEEECCCCcCcccCCccccC-----CCCCCEEeCCCCcCcc----cchhhhhcCCCCcEEEcccCCCCCC
Q 041082 323 SLYELDLSGNKLSGSIPTCFGN-----QTSLRILSLDSNKLIS----IIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 323 ~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
+|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++.+.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999999999998765544432 6799999999999986 7888899999999999999998654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=252.93 Aligned_cols=279 Identities=20% Similarity=0.196 Sum_probs=160.8
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
++.....++++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344456889999998 6787766 5899999999999988777899999999999999999988888899988888888
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEEccCCC-CCCCCCc
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNY-LTSSTPE 232 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~~~ 232 (639)
|++|.++.+ .+..+..+++|++|++++|.+.+..+ ..|..+++|++|++++|. ++..++.
T Consensus 107 Ls~n~l~~~------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 107 LSYNYLSNL------------------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CCSSCCSSC------------------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CCCCcCCcC------------------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 888777653 22335555666666666666655433 356666666666666653 3321110
Q ss_pred chhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 233 ~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
.+.+ ..+|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++
T Consensus 169 -----~~~~-------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 169 -----DFAG-------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp -----TTTT-------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred -----HccC-------CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 0000 0122333333333333334445555555556666555543222223345555555555555554
Q ss_pred CCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcc----cchhhhhcCCCCcEEEcccCCCCCCCcc
Q 041082 313 PIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS----IIPSTLWNLKDILYLNLSSNFFISPLPL 388 (639)
Q Consensus 313 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 388 (639)
..+..+.. ......++.++++++.+.+ .+|..+..+++|++|++++|+++. +|.
T Consensus 237 ~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~ 294 (353)
T 2z80_A 237 FHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPD 294 (353)
T ss_dssp CCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCT
T ss_pred cccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCH
Confidence 33322211 0122334444444444443 234445555555555555555542 333
Q ss_pred c-cccccccccccccCCCCCC
Q 041082 389 E-IGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 389 ~-~~~l~~L~~l~ls~N~l~g 408 (639)
. +..+++|+.|++++|++.+
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcCCCCCEEEeeCCCccC
Confidence 3 3555555555555555544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=252.73 Aligned_cols=245 Identities=23% Similarity=0.221 Sum_probs=170.4
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++.++.+++ .+|..+. +++++|+|++|.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556666676 5676665 689999999999998888899999999999999999988888889999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCcccCccccCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDLIPNTFGNLI 214 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~ 214 (639)
+++..+..|..+++|++|+|++|.++ ...+..|..+++|+.|++++| .+....+..|..++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIE------------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCC------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred CCeeCHhHhhccccCceeeCCCCccc------------------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 98777667877777777766666554 334455667777777777774 34444445677777
Q ss_pred CCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccc
Q 041082 215 NLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITL 294 (639)
Q Consensus 215 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 294 (639)
+|++|++++|.++..+ .+..+++|+.|+|++|.+++..|..|
T Consensus 186 ~L~~L~L~~n~l~~~~--------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIP--------------------------------------NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp SCCEEECTTSCCSSCC--------------------------------------CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ccCeecCCCCcCcccc--------------------------------------ccCCCcccCEEECCCCccCccChhhh
Confidence 7777777777665421 12344556666666666665555566
Q ss_pred cCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 041082 295 CKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI 359 (639)
Q Consensus 295 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 359 (639)
..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 66666666666666666555555666666666666666666555555555666666666665543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=244.11 Aligned_cols=249 Identities=24% Similarity=0.299 Sum_probs=188.1
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc--cCccccCCCCCCEEecC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT--IHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls 156 (639)
+.++.+++.++ .+|..+. ++|+.|++++|.+....+..|.++++|++|+|++|.++.. .|..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46788888877 5666554 5788888888888755555577888888888888887633 24555666666666666
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc-cccCCCCCCCEEEccCCCCCCCCCcchh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINLKRLNLYDNYLTSSTPELSF 235 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 235 (639)
+|.++ .+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 140 (306)
T 2z66_A 87 FNGVI-------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------- 140 (306)
T ss_dssp SCSEE-------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------
T ss_pred CCccc-------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------
Confidence 55543 244556677888888888888876654 467777777777777766543
Q ss_pred hccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc-cccccccCCcCCcEEEccCCcCCCCC
Q 041082 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG-SIPITLCKLQKLQLLSFVDNKLEGPI 314 (639)
Q Consensus 236 ~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~ 314 (639)
..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..
T Consensus 141 -----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 191 (306)
T 2z66_A 141 -----------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191 (306)
T ss_dssp -----------------------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred -----------------------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence 234456677889999999998876 57788888888999999999888887
Q ss_pred chhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCC-CCcEEEcccCCCCCC
Q 041082 315 PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK-DILYLNLSSNFFISP 385 (639)
Q Consensus 315 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~ 385 (639)
|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..++ +|++|++++|++.+.
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 88888888899999999988887777788888888888888888888888887774 888888888888664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-29 Score=254.19 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=141.2
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC-CCCCCcccc-------CCCCCcEEecccccCccccCcc
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL-FGEIPEELG-------NLAELETLWLQNNFLTGTIHSS 143 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~ 143 (639)
++..++|++|++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567788889999988 678777654 88889999888 456777666 7889999999999998888877
Q ss_pred c--cCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCC-----CCCcEEEcccCCCcccCccccCCCCCC
Q 041082 144 I--FNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA-----SKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 144 ~--~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
+ ..+++|++|+|++|.+++. |..+..+ ++|++|++++|++.+..|..|+.+++|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHHhcCCCccEEEccCCCCcch-------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 6 7777777777777766653 2222222 455555555555555544555555555
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhh--cCCCCCCEEECCCCCCCcc--cc-
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEI--SNLTNLTAIYLAGNKLNGS--IP- 291 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~--~p- 291 (639)
++|++++|++.+.. . .+..+ ..+++|++|++++|.+++. ++
T Consensus 176 ~~L~Ls~N~l~~~~---~-------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 176 STLDLSDNPELGER---G-------------------------------LISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp CEEECCSCTTCHHH---H-------------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CEEECCCCCcCcch---H-------------------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 55555555443210 0 00111 2333444444444444311 11
Q ss_pred ccccCCcCCcEEEccCCcCCCCCc-hhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPIP-YEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLK 370 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 370 (639)
..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 112233444444444444444332 22333455555555555555 3444433 4555555555555554 33 55555
Q ss_pred CCcEEEcccCCCCC
Q 041082 371 DILYLNLSSNFFIS 384 (639)
Q Consensus 371 ~L~~L~ls~N~l~~ 384 (639)
+|++|++++|++++
T Consensus 297 ~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 297 QVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECTTCTTTC
T ss_pred CCCEEeccCCCCCC
Confidence 55555555555543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=242.85 Aligned_cols=281 Identities=22% Similarity=0.265 Sum_probs=165.0
Q ss_pred CCCCcccccCCCC--CCCCcCccceecCCCC--CcEEEEEeCCCCCcccCCcCC--CCCCCCCEEeccCCcCCccCCccc
Q 041082 23 DDPTNFLAKNWNT--SSTVCHWTGVSCDVRS--YRVTTLNISGLSLTSTIPSEL--GNLSSLQTLDLSFNWFSGSIPSSI 96 (639)
Q Consensus 23 ~~~~~~l~~~w~~--~~~~c~w~gv~c~~~~--~~v~~L~L~~~~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~ 96 (639)
.|+..++.. |.. ..++|.|.++-|.... ..+. ...+.... .++..+ ...+++++|+|++|.+. .+|..+
T Consensus 26 ~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~-~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 26 RPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHH-HHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred chHHHHHHH-HHHhccCCchhhhhhhccccccccccc--ccCCcchh-hhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 345556666 865 3578998877763211 1110 00000000 111111 13467889999998888 778888
Q ss_pred cCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCC
Q 041082 97 FNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGN 176 (639)
Q Consensus 97 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N 176 (639)
+.+++|++|+|++|.+. .+|..|+++++|++|+|++|+++ .+|..+.++++|++|+|++|
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n------------------ 160 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC------------------ 160 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE------------------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC------------------
Confidence 88888888888888887 77888888888888888888887 56766666555544444433
Q ss_pred ccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEE
Q 041082 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFS 256 (639)
Q Consensus 177 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~ 256 (639)
++.+.+|..+.. . ..+..|+.+++|++|++++|.++.
T Consensus 161 ~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~---------------------------- 197 (328)
T 4fcg_A 161 PELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRS---------------------------- 197 (328)
T ss_dssp TTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCC----------------------------
T ss_pred CCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCc----------------------------
Confidence 333344443221 0 011223445555555555554432
Q ss_pred eecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc
Q 041082 257 MFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336 (639)
Q Consensus 257 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 336 (639)
+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+.+|..|+.+++|+.|++++|.+.+
T Consensus 198 ---------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 198 ---------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ---------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred ---------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 33445556666666666666664 44456666666666666666666666666666666666666666666
Q ss_pred cCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCC
Q 041082 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNF 381 (639)
Q Consensus 337 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 381 (639)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..|.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 666666666666666666666666666666666666666555443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=249.40 Aligned_cols=248 Identities=24% Similarity=0.194 Sum_probs=187.6
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
..+.++.+++.++ .+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3568888888887 5777665 688999999999988888889999999999999999988888888887777766666
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 236 (639)
+|.|+ +..+..+..+++|+.|+|++|.+....+..|..+++|++|++++|...+.
T Consensus 132 ~n~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------- 186 (452)
T 3zyi_A 132 DNWLT------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------- 186 (452)
T ss_dssp SSCCS------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-------
T ss_pred CCcCC------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-------
Confidence 66554 34456677888999999999999888777888888888888887432210
Q ss_pred ccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCch
Q 041082 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPY 316 (639)
Q Consensus 237 ~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 316 (639)
..+..+..+++|++|++++|.+++. | .+..+++|+.|++++|++++..|.
T Consensus 187 ----------------------------i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 187 ----------------------------ISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp ----------------------------ECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred ----------------------------cChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcc
Confidence 1123456778888888888888753 3 466777778888888877777777
Q ss_pred hhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCC
Q 041082 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 317 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 382 (639)
.|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 777777777777777777777777777777777777777777776666666666666666666655
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=247.68 Aligned_cols=247 Identities=23% Similarity=0.220 Sum_probs=190.1
Q ss_pred CCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 78 LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 78 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.+.++.+++.++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 567888888888 6887776 6889999999999988888999999999999999999988888888887777777766
Q ss_pred CCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhc
Q 041082 158 NNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237 (639)
Q Consensus 158 N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 237 (639)
|.|+ +..+..|..+++|+.|+|++|.+....+..|..+++|++|++++|...+.
T Consensus 122 n~l~------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------- 175 (440)
T 3zyj_A 122 NRLT------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-------- 175 (440)
T ss_dssp SCCS------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------
T ss_pred CcCC------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--------
Confidence 6655 34455677888999999999999888888888899999998887533211
Q ss_pred cccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 238 ~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
..+..+..+++|++|++++|.++. +| .+..+++|+.|++++|++++..|..
T Consensus 176 ---------------------------i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 176 ---------------------------ISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp ---------------------------ECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred ---------------------------eCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhh
Confidence 112345677888888888888873 44 3667777777777777777777777
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCC
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 382 (639)
|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77777777777777777777777777777777777777777776666666667777777777665
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=252.03 Aligned_cols=255 Identities=21% Similarity=0.173 Sum_probs=156.3
Q ss_pred EEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 80 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
.++++.+.+...++..+..+++|+.|++++|++.+..|..|.++++|++|+|++|++++..+ +..+++|++|+|++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444433333333344455555555555554444455555555555555555544332 4555555555555555
Q ss_pred CCCCC-CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 160 LTDVQ-IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 160 l~~~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
++++. .++|+.|++++|++++..+.. +++|+.|++++|.+.+..+..|+.+++|++|++++|.+++.
T Consensus 92 l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 159 (317)
T 3o53_A 92 VQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------- 159 (317)
T ss_dssp EEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---------
T ss_pred cccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---------
Confidence 44432 345556666666655544332 45677777777777777666777777777777777766542
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhh-cCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEI-SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
.+..+ ..+++|++|++++|.+++. |. ...+++|+.|++++|++++..+ .
T Consensus 160 ---------------------------~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~ 209 (317)
T 3o53_A 160 ---------------------------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-E 209 (317)
T ss_dssp ---------------------------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-G
T ss_pred ---------------------------cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-h
Confidence 12222 3566788888888877754 22 2246778888888888775444 4
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEccc
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLSS 379 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls~ 379 (639)
|..+++|+.|++++|.++. +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++++
T Consensus 210 ~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 7778888888888888874 5667777788888888888887 66677777777777776663
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=236.46 Aligned_cols=223 Identities=25% Similarity=0.250 Sum_probs=141.5
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++.++++++. +|..+ .++|++|+|++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456777777763 56544 368899999999998777777888888888888888888777888888888888888888
Q ss_pred c-CccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCC
Q 041082 135 F-LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNL 213 (639)
Q Consensus 135 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 213 (639)
. +....|..+..+++|++|++++|.++ +..|..+..+++|+.|++++|.+.+..+..|+.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ------------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCC------------------EECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 6 66555666666655555555554443 3445556666667777777776666655556666
Q ss_pred CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccc
Q 041082 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293 (639)
Q Consensus 214 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 293 (639)
++|++|++++|.+++.+ +..+..+++|+.|++++|.+++..|..
T Consensus 153 ~~L~~L~l~~n~l~~~~------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVP------------------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp TTCCEEECCSSCCCEEC------------------------------------TTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCccEEECCCCcccccC------------------------------------HHHhcCccccCEEECCCCcccccCHhH
Confidence 66666666666554321 122344555666666666555555555
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcC
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKL 334 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 334 (639)
+..+++|+.|++++|++++..+..+..+++|+.|++++|.+
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 55555555555555555544444444444444444444444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=238.47 Aligned_cols=267 Identities=25% Similarity=0.295 Sum_probs=205.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
++++.+++.+. .+|..+ .++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 567654 368899999999998887788889999999999999998888888888888888888777
Q ss_pred C-CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhc
Q 041082 159 N-LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237 (639)
Q Consensus 159 ~-l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 237 (639)
. ++. ..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++.+
T Consensus 91 ~~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 145 (285)
T 1ozn_A 91 AQLRS------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------- 145 (285)
T ss_dssp TTCCC------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------
T ss_pred CCccc------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------
Confidence 5 443 34666778889999999999998888888888999999999888876532
Q ss_pred cccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchh
Q 041082 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317 (639)
Q Consensus 238 ~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 317 (639)
+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..
T Consensus 146 -----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 146 -----------------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp -----------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred -----------------------------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 223556778889999999888766667888899999999999998888888
Q ss_pred hcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccc--ccc
Q 041082 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN--LKV 395 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~--l~~ 395 (639)
|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. +-...++.+..+.|.+....|..+.+ +..
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~ 275 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhh
Confidence 888999999999999998877777888899999999999887644421 11112333445667777777776654 334
Q ss_pred cccccccC
Q 041082 396 LVGIDLSM 403 (639)
Q Consensus 396 L~~l~ls~ 403 (639)
+...++++
T Consensus 276 l~~~~l~~ 283 (285)
T 1ozn_A 276 LAANDLQG 283 (285)
T ss_dssp SCGGGSCC
T ss_pred cCHHHhcc
Confidence 44444443
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-28 Score=247.64 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=145.5
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.+||.||++...+ ++.||||.+..... ...+.|..|+.+++ .+|||||++|
T Consensus 75 G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G 154 (353)
T 4ase_A 75 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 154 (353)
T ss_dssp CSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTE
T ss_pred CCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCC
Confidence 5699999998653 35799999865432 23456777777643 2689999999
Q ss_pred CchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.++|+.. ...++|.++..|+.+||+||+||| +.+|+||||||+|||+++++.+||+|||+
T Consensus 155 ~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~vKi~DFGl 231 (353)
T 4ase_A 155 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGL 231 (353)
T ss_dssp EHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGG
T ss_pred CHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceeeCCCCCEEECcchh
Confidence 999998642 234899999999999999999999 67899999999999999999999999999
Q ss_pred cccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 523 AKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 523 a~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
|+.+..+.... .. ...+.++||| | | |+.|+.+.-. ...+...+....
T Consensus 232 ar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-~~~~~~~i~~g~----- 305 (353)
T 4ase_A 232 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGT----- 305 (353)
T ss_dssp GSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHTC-----
T ss_pred hhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-HHHHHHHHHcCC-----
Confidence 99775443210 00 0122378888 6 6 7888753211 111222221110
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.+.+..+...+.+++.+||+.+|++||||.||+++|+++.++
T Consensus 306 -------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 306 -------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp -------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 0011222344577899999999999999999999999887553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=248.11 Aligned_cols=268 Identities=24% Similarity=0.335 Sum_probs=223.5
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEec
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 155 (639)
.++++|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|+|++|++++ +|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46899999999999 7888776 899999999999984 555 57899999999999985 554 7899999999
Q ss_pred CCCCCCCCC--CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 156 SHNNLTDVQ--IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 156 s~N~l~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
++|.++.++ +++|+.|++++|++++ +|.. +++|+.|++++|.++++ |. .+++|+.|++++|.+++.+.
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~-- 178 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLPM-- 178 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCcc--
Confidence 999998864 6899999999999986 5543 48999999999999875 33 35789999999999987541
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
...+|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|+.|++++|++++
T Consensus 179 --------------~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 179 --------------LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS- 235 (622)
T ss_dssp --------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-
T ss_pred --------------cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-
Confidence 12478899999999986 443 35789999999999984 4532 4789999999999987
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNL 393 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l 393 (639)
+| ..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 44 456899999999999985 554 5688999999999999 467889999999999999999998888877665
Q ss_pred cc
Q 041082 394 KV 395 (639)
Q Consensus 394 ~~ 395 (639)
+.
T Consensus 308 ~~ 309 (622)
T 3g06_A 308 TS 309 (622)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-28 Score=252.32 Aligned_cols=253 Identities=20% Similarity=0.173 Sum_probs=194.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC-CccCCcccc-------CCcccceeeccCCcCCCCCCccc--c
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF-SGSIPSSIF-------NMSSLLSIYFNNNTLFGEIPEEL--G 121 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~ 121 (639)
.+++.|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|++++|.+.+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3567788899998 678776654 99999999999 567887776 89999999999999999999986 8
Q ss_pred CCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCC
Q 041082 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNS 201 (639)
Q Consensus 122 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 201 (639)
.+++|++|+|++|++++. |..+..+... .+++|++|+|++|++++..|..+..+++|+.|++++|+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQW-------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTT-------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHh-------------hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 999999999999999987 7777665110 12455555555566666677888889999999999999
Q ss_pred Cccc--Ccccc--CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCC
Q 041082 202 FFDL--IPNTF--GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277 (639)
Q Consensus 202 l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~ 277 (639)
+.+. .|..+ +.+++|++|++++|.+++.+. .....+..+++|+
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSG---------------------------------VCSALAAARVQLQ 231 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH---------------------------------HHHHHHHTTCCCS
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHH---------------------------------HHHHHHhcCCCCC
Confidence 8765 23334 889999999999998874210 0112234667888
Q ss_pred EEECCCCCCCcccc-ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCC
Q 041082 278 AIYLAGNKLNGSIP-ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356 (639)
Q Consensus 278 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 356 (639)
.|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 88888888887664 34556788888888888887 5565554 7888888888888876 55 788888888888888
Q ss_pred cCcc
Q 041082 357 KLIS 360 (639)
Q Consensus 357 ~l~~ 360 (639)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8875
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-28 Score=249.66 Aligned_cols=255 Identities=22% Similarity=0.233 Sum_probs=187.3
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
++..++++.+.+...++..+..+++|++|+|++|.+++..|..|..+++|+.|++++|.+.+..| |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 55667777777765555566778899999999999998888899999999999999999987665 9999999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC---CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV---QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
+|++++.. ..++|++|++++|.++++ .+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 99998543 348999999999999875 3789999999999999988889999999999999999999987777
Q ss_pred c-CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCc
Q 041082 210 F-GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288 (639)
Q Consensus 210 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 288 (639)
+ ..+++|++|++++|.+++.+.. ..+++|+.|++++|.+++
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------------~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ--------------------------------------VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC--------------------------------------CCCTTCCEEECCSSCCCE
T ss_pred HhhccCcCCEEECCCCcCcccccc--------------------------------------cccccCCEEECCCCcCCc
Confidence 6 4789999999999998754211 113344455555555443
Q ss_pred cccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCc-ccCCccccCCCCCCEEeCC
Q 041082 289 SIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSLD 354 (639)
Q Consensus 289 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~ 354 (639)
. |..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++
T Consensus 206 l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 206 M-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred c-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 2 2234444555555555555542 3444444555555555555554 4444444455555555444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=254.92 Aligned_cols=236 Identities=22% Similarity=0.192 Sum_probs=144.6
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++.+| |+.+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3366666666666666555666666666666666666655444 5666666666666666654322 14444444
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcch
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 234 (639)
|+ +|.+++..+. .+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++.
T Consensus 106 L~------------------~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 159 (487)
T 3oja_A 106 AA------------------NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV----- 159 (487)
T ss_dssp CC------------------SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-----
T ss_pred Cc------------------CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-----
Confidence 44 4444443332 235566666666666666666666666666666666655432
Q ss_pred hhccccCCcchhhhccCccEEEeecCccccccchhhc-CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCC
Q 041082 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGP 313 (639)
Q Consensus 235 ~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 313 (639)
.|..+. .+++|+.|+|++|.+++..+ ...+++|+.|++++|++++.
T Consensus 160 -------------------------------~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 160 -------------------------------NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp -------------------------------EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred -------------------------------ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 233332 45667777777777765422 23467777777777777764
Q ss_pred CchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCc-ccchhhhhcCCCCcEEEcc
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLI-SIIPSTLWNLKDILYLNLS 378 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~ls 378 (639)
+| .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|..++++
T Consensus 207 ~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44 37777788888888888775 5666777778888888888776 5566666666666555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=258.53 Aligned_cols=233 Identities=22% Similarity=0.224 Sum_probs=170.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|+.|+|++|.+++..+ .++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 79999999999999888899999999999999999997766 9999999999999999986443 3899999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC-
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG- 211 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~- 211 (639)
+|.+++..+.. + ++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+.
T Consensus 108 ~N~l~~~~~~~---l------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 108 NNNISRVSCSR---G------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp SSCCCCEEECC---C------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCcCCCCCccc---c------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 99999776532 3 3455555556666666677777788888888888888887777775
Q ss_pred CCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccc
Q 041082 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIP 291 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 291 (639)
.+++|+.|+|++|.+++.++ ...+++|+.|+|++|.+++..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~--------------------------------------~~~l~~L~~L~Ls~N~l~~~~- 207 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG--------------------------------------QVVFAKLKTLDLSSNKLAFMG- 207 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC--------------------------------------CCCCTTCCEEECCSSCCCEEC-
T ss_pred hCCcccEEecCCCccccccc--------------------------------------cccCCCCCEEECCCCCCCCCC-
Confidence 68888888888887765311 112455666666666666433
Q ss_pred ccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCc-ccCCccccCCCCCCEEeC
Q 041082 292 ITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS-GSIPTCFGNQTSLRILSL 353 (639)
Q Consensus 292 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l 353 (639)
..+..+++|+.|++++|++++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 335566666666666666664 4555666666777777777665 455555666655555544
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=220.74 Aligned_cols=170 Identities=29% Similarity=0.420 Sum_probs=125.2
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.+.|.|.|+.|... ..++.+++++++++. +|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36799999999763 245689999999984 676665 68999999999999777778999999999999999988776
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEE
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILE 196 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 196 (639)
+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++. ..|..+..+++|+.|+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS------------------LPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC------------------CCTTTTTTCTTCCEEE
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe------------------eCHHHhCcCcCCCEEE
Confidence 6677889999999999999887766667777666666666665543 3344455556666666
Q ss_pred cccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 197 LQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
+++|.+.+..+..|..+++|++|++++|.+++
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 66666655555555556666666665555544
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=227.50 Aligned_cols=194 Identities=24% Similarity=0.288 Sum_probs=142.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .|..||||+++.........+..|+.+++. +||||+++|+|.+++..
T Consensus 85 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~ 164 (346)
T 4fih_A 85 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH 164 (346)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc
Confidence 569999999864 689999999987665556677888888653 78999999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT-------- 537 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~-------- 537 (639)
..+++.....|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...........
T Consensus 165 --~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP 239 (346)
T 4fih_A 165 --TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 239 (346)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCH
Confidence 35899999999999999999999 66899999999999999999999999999998754432111111
Q ss_pred -------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 538 -------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 538 -------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
.+.++||| | ||+.|..+. ....+...+....+ +.+. ........+.
T Consensus 240 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~~~~--------~~~~--------~~~~~s~~~~ 301 (346)
T 4fih_A 240 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLP--------PRLK--------NLHKVSPSLK 301 (346)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSSC--------CCCS--------CGGGSCHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHcCCC--------CCCC--------ccccCCHHHH
Confidence 12378888 6 888887531 11112222221111 1110 0111223456
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++..+|++.+|++|||+.|+++
T Consensus 302 dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 302 GFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHcCCChhHCcCHHHHhc
Confidence 7888999999999999999875
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=212.33 Aligned_cols=147 Identities=28% Similarity=0.299 Sum_probs=100.6
Q ss_pred CCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcccc
Q 041082 61 GLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTI 140 (639)
Q Consensus 61 ~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 140 (639)
+.+++ .+|..+. ++|++|+|++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++|.+++..
T Consensus 16 ~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 33443 4666554 57899999999998777778888888888888888888777778888888888888888888777
Q ss_pred CccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc-CccccCCCCCCCEE
Q 041082 141 HSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL-IPNTFGNLINLKRL 219 (639)
Q Consensus 141 p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 219 (639)
+..|.++++|++|++++|.++. ..+..+..+++|+.|++++|.+.+. +|..|+.+++|++|
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred hhhhcCCccccEEECCCCCccc------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 7777776666666666555442 2233455556666666666666543 35555555555555
Q ss_pred EccCCCCCC
Q 041082 220 NLYDNYLTS 228 (639)
Q Consensus 220 ~Ls~N~l~~ 228 (639)
++++|++++
T Consensus 155 ~Ls~N~l~~ 163 (276)
T 2z62_A 155 DLSSNKIQS 163 (276)
T ss_dssp ECCSSCCCE
T ss_pred ECCCCCCCc
Confidence 555555543
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-25 Score=218.08 Aligned_cols=197 Identities=21% Similarity=0.269 Sum_probs=137.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .+..||+|.+.... ......|..|+.+++ .+|||||++|+|
T Consensus 37 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L 116 (290)
T 3fpq_A 37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL 116 (290)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBH
T ss_pred CcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCH
Confidence 579999999864 57899999986543 223456778887743 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS---FT- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~---~~- 534 (639)
.+++.. ...+++.....|+.+|+.||+|||+. .++|+||||||.|||+++ ++.+||+|||+|+........ ++
T Consensus 117 ~~~l~~-~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp 194 (290)
T 3fpq_A 117 KTYLKR-FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194 (290)
T ss_dssp HHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCc
Confidence 999975 34689999999999999999999943 346999999999999985 799999999999865433211 00
Q ss_pred -----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|..+ ...................++ ..+.
T Consensus 195 ~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~----~~~~~~~~~~i~~~~~~~~~~--------------~~~~ 256 (290)
T 3fpq_A 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSE----CQNAAQIYRRVTSGVKPASFD--------------KVAI 256 (290)
T ss_dssp CCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTT----CSSHHHHHHHHTTTCCCGGGG--------------GCCC
T ss_pred cccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC----CCcHHHHHHHHHcCCCCCCCC--------------ccCC
Confidence 0 0112378888 6 88888753 122222222111110000000 0111
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 257 ~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 257 PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhHCcCHHHHhc
Confidence 24667889999999999999999875
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=210.51 Aligned_cols=206 Identities=26% Similarity=0.206 Sum_probs=95.8
Q ss_pred ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCc
Q 041082 101 SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSG 180 (639)
Q Consensus 101 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~ 180 (639)
+|+.|++++|.+.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++ +
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------~ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------S 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------E
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------------c
Confidence 4555555555555444444555555555555555555444444444444444444333332 2
Q ss_pred cCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecC
Q 041082 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNC 260 (639)
Q Consensus 181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n 260 (639)
..|..+.++++|+.|++++|.+.+..+..++.+++|++|++++|.+++..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------------ 140 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------------------------------ 140 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC------------------------------
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec------------------------------
Confidence 23334444455555555555555444444555555555555555443310
Q ss_pred ccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCc----EEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc
Q 041082 261 NISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ----LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336 (639)
Q Consensus 261 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 336 (639)
+|..+..+++|+.|++++|.+++..+..+..+.+|+ .|++++|++.+..+..+.. .+|+.|++++|.+++
T Consensus 141 -----l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 141 -----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred -----CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 122333344444444444444443333343333333 4444555444433333322 245555555555554
Q ss_pred cCCccccCCCCCCEEeCCCCcCcc
Q 041082 337 SIPTCFGNQTSLRILSLDSNKLIS 360 (639)
Q Consensus 337 ~~p~~~~~l~~L~~L~l~~N~l~~ 360 (639)
..+..|..+++|+.|++++|.+.+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCHhHhcccccccEEEccCCcccc
Confidence 444444555555555555555554
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=227.34 Aligned_cols=194 Identities=20% Similarity=0.304 Sum_probs=137.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||++.. ..|..||||++.... ......+..|+.+++. +||||+++|+|.+++
T Consensus 35 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i 114 (350)
T 4b9d_A 35 GSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRI 114 (350)
T ss_dssp ----CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHH
Confidence 46999999985 468999999987543 2234567788877553 789999999999999
Q ss_pred ccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----cc---
Q 041082 464 YSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----FT--- 534 (639)
Q Consensus 464 ~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----~~--- 534 (639)
... ...+++.+...|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...... ++
T Consensus 115 ~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~Y 191 (350)
T 4b9d_A 115 NAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYY 191 (350)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTT
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccc
Confidence 653 345788888999999999999999 678999999999999999999999999999977543210 00
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|... .+..+.+........ .+ + +.....
T Consensus 192 mAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~-----~~~~~~~~~i~~~~~----~~-~----------~~~~s~ 251 (350)
T 4b9d_A 192 LSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA-----GSMKNLVLKIISGSF----PP-V----------SLHYSY 251 (350)
T ss_dssp CCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHTCC----CC-C----------CTTSCH
T ss_pred cCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHcCCC----CC-C----------CccCCH
Confidence 00112378998 7 89888753 222222222111110 00 0 011122
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++|||+.|+++
T Consensus 252 ~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 252 DLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHccCChhHCcCHHHHhc
Confidence 4667888999999999999999975
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=206.95 Aligned_cols=186 Identities=24% Similarity=0.293 Sum_probs=167.0
Q ss_pred CCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCC
Q 041082 38 TVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP 117 (639)
Q Consensus 38 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 117 (639)
+||.|.|.+|.. ..+.+++++++++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 467899999953 3456899999998 5777666 689999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCC
Q 041082 118 EELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASK 191 (639)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~ 191 (639)
..|.++++|++|+|++|++++..+..|..+++|++|+|++|.|+.+. +++|+.|+|++|++++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 89999999999999999999888888999999999999999998743 688999999999999888878999999
Q ss_pred CcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 192 LSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 192 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
|+.|+|++|++.+..+..|..+++|+.|++++|.++..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999998888899999999999999999875
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=227.28 Aligned_cols=194 Identities=24% Similarity=0.289 Sum_probs=142.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .|..||||+++.........+..|+.+++. +|||||++|+|.+++..
T Consensus 162 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~ 241 (423)
T 4fie_A 162 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH 241 (423)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhc
Confidence 569999999864 689999999987766556678888888653 78999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT-------- 537 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~-------- 537 (639)
..+++.+...|+.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...........
T Consensus 242 --~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAP 316 (423)
T 4fie_A 242 --TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAP 316 (423)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCH
Confidence 34899999999999999999999 66899999999999999999999999999997754432111111
Q ss_pred -------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 538 -------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 538 -------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
.+.++||| | ||+.|+.+. ....+...+....+ +.+.. .......+.
T Consensus 317 Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--~~~~~~~~i~~~~~--------~~~~~--------~~~~s~~~~ 378 (423)
T 4fie_A 317 ELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLP--------PRLKN--------LHKVSPSLK 378 (423)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC--------CCCSC--------TTSSCHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--CHHHHHHHHHcCCC--------CCCcc--------cccCCHHHH
Confidence 12378888 6 888887531 11112222221111 11100 011122456
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++..+|++.+|++|||+.|+++
T Consensus 379 dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 379 GFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHcCCChhHCcCHHHHhc
Confidence 7888999999999999999875
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-24 Score=217.49 Aligned_cols=216 Identities=32% Similarity=0.468 Sum_probs=165.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++...++..+|+|++...... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 41 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 3uim_A 41 GGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE 120 (326)
T ss_dssp CSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHC
T ss_pred CCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHh
Confidence 4689999999888999999998754322 2235666776643 268999999999999876
Q ss_pred C---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc------
Q 041082 466 S---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ------ 535 (639)
Q Consensus 466 ~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~------ 535 (639)
. ...++|..+..|+.+++.||+|||..+.++|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 121 ~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~ 200 (326)
T 3uim_A 121 RPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIG 200 (326)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcC
Confidence 2 2359999999999999999999997767799999999999999999999999999998765332210 00
Q ss_pred ---------cccccccccc--c-------CCCCCCCcc---CCCccchHHHHHhhCCCC-cceeeeccccccccccccch
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNF---FSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~---~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | ||+.|.+.. ......+.+|+....... ....+++.+... ..
T Consensus 201 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 274 (326)
T 3uim_A 201 HIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN------YK 274 (326)
T ss_dssp GCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS------CC
T ss_pred ccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc------cC
Confidence 0123378999 7 899998532 234567788887766554 556666655432 34
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.++...+.+++..|++.+|++||||.||+++|+..
T Consensus 275 ~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 275 DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp HHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 67788899999999999999999999999999753
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=214.79 Aligned_cols=215 Identities=29% Similarity=0.453 Sum_probs=164.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++..........+..|+..++ .+|+||+++|+|.+++...
T Consensus 50 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 129 (321)
T 2qkw_B 50 GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGS 129 (321)
T ss_dssp CSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSS
T ss_pred CCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhcc
Confidence 46899999998889999999987665555567777777643 3689999999999998753
Q ss_pred C---ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c-----c--
Q 041082 467 N---YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-----T-- 534 (639)
Q Consensus 467 ~---~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-----~-- 534 (639)
. ..++|.++.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ . +
T Consensus 130 ~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~ 206 (321)
T 2qkw_B 130 DLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLG 206 (321)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETT
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCcc
Confidence 2 35899999999999999999999 568999999999999999999999999999865432111 0 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccC-CCccchHHHHHhhCCC-CcceeeeccccccccccccchHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFF-SGEMTLKSWVNDLLPI-SVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~-~~~~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.++||| | ||+.|..... .....+.+|+...... ...+.+++.+.. ....+
T Consensus 207 y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 280 (321)
T 2qkw_B 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLAD------KIRPE 280 (321)
T ss_dssp TCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTT------CSCHH
T ss_pred ccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcc------ccCHH
Confidence 01123478999 7 8998876543 2345667776543333 345566665543 22467
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+...+.+++.+|++.+|++||+|.||+++|+.+.+
T Consensus 281 ~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 281 SLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp HHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 78889999999999999999999999999997753
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-23 Score=203.40 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=174.9
Q ss_pred CCCCCCCc--CccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcc
Q 041082 33 WNTSSTVC--HWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSS 101 (639)
Q Consensus 33 w~~~~~~c--~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 101 (639)
|.+..+.| .|..|.|+... ..++.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++
T Consensus 7 ~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 7 KDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp GGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 76666556 47788887531 35889999999999877778999999999999999999766667789999
Q ss_pred cceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWG 175 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~ 175 (639)
|++|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++.+. +++|+.|+|++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 999999999999888888999999999999999999988888999999999999999998743 67999999999
Q ss_pred CccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCC
Q 041082 176 NNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 176 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
|++++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999888888889999999999999999888888999999999999999887643
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=220.94 Aligned_cols=198 Identities=24% Similarity=0.282 Sum_probs=137.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.. ..|..||||+++..... ..|+.+++ ++|||||++|+|.+++..
T Consensus 69 G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~ 143 (336)
T 4g3f_A 69 GSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQ 143 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHH
Confidence 46999999986 46899999999754321 23555532 378999999999999975
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc-----ccccc-
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF-----TQNTN- 538 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~-----~~~~~- 538 (639)
. ..+++.....|+.+|+.||+||| +.+|+||||||.|||++.++ .+||+|||+|+.+..+.... ....+
T Consensus 144 ~-~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT 219 (336)
T 4g3f_A 144 M-GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGT 219 (336)
T ss_dssp H-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccC
Confidence 3 35899999999999999999999 67899999999999999987 69999999999775432110 00011
Q ss_pred --------------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 539 --------------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 539 --------------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+.++||| | ||+.|..+.... .+..-+... +.... +.++.
T Consensus 220 ~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~i~~~-~~~~~---------------~~~~~ 281 (336)
T 4g3f_A 220 ETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG--PLCLKIASE-PPPIR---------------EIPPS 281 (336)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS--CCHHHHHHS-CCGGG---------------GSCTT
T ss_pred ccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHcC-CCCch---------------hcCcc
Confidence 2267888 6 788887543211 111111110 00000 01122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+...+.++..+|++.+|++|||+.|+++.|..+...
T Consensus 282 ~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 282 CAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 334566788899999999999999999998876544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=248.66 Aligned_cols=357 Identities=13% Similarity=0.113 Sum_probs=238.8
Q ss_pred CcEEEEEeCCCCC---cccCCcCCC------------CCCCCCEEeccCCcCCccCCccccCC--cccceeeccCCcC-C
Q 041082 52 YRVTTLNISGLSL---TSTIPSELG------------NLSSLQTLDLSFNWFSGSIPSSIFNM--SSLLSIYFNNNTL-F 113 (639)
Q Consensus 52 ~~v~~L~L~~~~l---~~~~p~~l~------------~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l-~ 113 (639)
.+++.|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|+.|+|++|.. .
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 5688888877532 245555444 68889999999998887666666653 4488888888762 1
Q ss_pred C-CCCccccCCCCCcEEecccccCccc----cCccccCCCCCCEEecCCCCCCCC----------CCCCccEEEccCCcc
Q 041082 114 G-EIPEELGNLAELETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNF 178 (639)
Q Consensus 114 ~-~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l 178 (639)
. .++....++++|++|+|++|.+++. ++..+..+++|++|+|++|.++++ .+++|+.|+|++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1222334778888888888887655 334556788888888888888732 267888888888877
Q ss_pred CccCCccccCCCCCcEEEcc---------------------------cCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 179 SGAIPHFIFNASKLSILELQ---------------------------KNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~---------------------------~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
.+ +|..+..+++|+.|+++ ++. ...+|..+..+++|++|++++|.++....
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 64 44444455555555554 321 23345566677888888888887643210
Q ss_pred cchhhccccCCcchh--------------hhccCccEEEeec-----------Ccccccc-chhhcCCCCCCEEECCCCC
Q 041082 232 ELSFLYSLSNCKYLE--------------QSSQSLEVFSMFN-----------CNISGGI-LEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~--------------~~~~~l~~l~l~~-----------n~l~~~~-~~~~~~l~~L~~L~Ls~N~ 285 (639)
...+..+.+++.|. ....+|+.|++++ +.+++.. ......+++|++|+++.|.
T Consensus 311 -~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 311 -CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp -HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred -HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 01122333443332 1246788888883 4555432 2234557888888888888
Q ss_pred CCccccccccC-CcCCcEEEcc----CCcCCCC-----CchhhcCCCCCcEEECCCCc--CcccCCcccc-CCCCCCEEe
Q 041082 286 LNGSIPITLCK-LQKLQLLSFV----DNKLEGP-----IPYEFCRLASLYELDLSGNK--LSGSIPTCFG-NQTSLRILS 352 (639)
Q Consensus 286 l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~ 352 (639)
+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++.|. +++..+..+. .+++|++|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 88766666655 7888888885 6677764 34456778889999987543 5544333333 478899999
Q ss_pred CCCCcCcc-cchhhhhcCCCCcEEEcccCCCCCC-CccccccccccccccccCCCCCCcCc
Q 041082 353 LDSNKLIS-IIPSTLWNLKDILYLNLSSNFFISP-LPLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 353 l~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+++|.+++ .++..+..+++|++|++++|.++.. ++.....+++|+.|++++|+++..|.
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 99999876 3455567889999999999987644 34445678889999999999887553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=202.85 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
++++++++++++++|.++ .+|..+. +.++.|++++|.+.+..|..|..+++|++|+|++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 455666777777777766 4555443 4666666666666666666666666666666666666644321 3444444
Q ss_pred EEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 152 DLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 152 ~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
+|+|++|.|+ .+|..+..+++|+.|++++|++++..|..|..+++|++|+|++|++++
T Consensus 81 ~L~Ls~N~l~-------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 81 TLDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp EEECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred EEECCCCcCC-------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 4444444433 234444455555555555555555555555555555555555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=206.77 Aligned_cols=229 Identities=25% Similarity=0.251 Sum_probs=162.2
Q ss_pred cccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccC
Q 041082 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFS 179 (639)
Q Consensus 100 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~ 179 (639)
..+..+++..+.+... ..+..+++|+.|++++|.++.. ..+..+++|++|+|++|.++++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------------- 78 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI---------------- 78 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC----------------
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc----------------
Confidence 3455566666665443 2345667777777777776632 2456666666666666555431
Q ss_pred ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeec
Q 041082 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN 259 (639)
Q Consensus 180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~ 259 (639)
..+..+++|++|++++|.+++..+..|+.+++|++|++++|++++.+
T Consensus 79 ----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------------- 125 (272)
T 3rfs_A 79 ----SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP----------------------------- 125 (272)
T ss_dssp ----GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------------------
T ss_pred ----hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-----------------------------
Confidence 24556677777777777777776666777777777777777666432
Q ss_pred CccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCC
Q 041082 260 CNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339 (639)
Q Consensus 260 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 339 (639)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|
T Consensus 126 -------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 126 -------DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 2234566777777888777776666667778888888888888887777777888888888888888888777
Q ss_pred ccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccc
Q 041082 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKV 395 (639)
Q Consensus 340 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 395 (639)
..|..+++|++|++++|.+.+. ++.|+++++..|.++|.+|.+++.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7788888888888888887754 445778888888888888888877654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=201.03 Aligned_cols=113 Identities=26% Similarity=0.194 Sum_probs=51.4
Q ss_pred ccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCc
Q 041082 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDIL 373 (639)
Q Consensus 294 ~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 373 (639)
+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++.+.+..|..+++|+
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 33344444444444444433334444444444444444444444444444444444444444444444444444444444
Q ss_pred EEEcccCCCCCCCccccccccccccccccCCCCC
Q 041082 374 YLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 374 ~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
.|++++|++. .+|..+.....|+.+++++|++.
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 4444444443 23444444445555555555553
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=203.21 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=132.1
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.++. + ..++.+++|++|+|++|.+.+ + ..+..+++|++|++++|.+.+..|..|+++++|++|+|+
T Consensus 42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 57788888888763 2 347788888888888888875 3 478888888888888888888777778888888888888
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 206 (639)
+|++++..+..+..+++|++|+|++|.++++. +++|+.|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 88888777777888888888888888777642 466777777777777666666667777777777777777766
Q ss_pred ccccCCCCCCCEEEccCCCCCC
Q 041082 207 PNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
|..|+.+++|++|++++|.+.+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHHhCCcCCCEEEccCCCccc
Confidence 6666777777777777776654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=197.90 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=106.4
Q ss_pred cCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCc-CCCCCCccccCCCCCcEEeccc-ccCccccCccc
Q 041082 67 TIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT-LFGEIPEELGNLAELETLWLQN-NFLTGTIHSSI 144 (639)
Q Consensus 67 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~ 144 (639)
.+|. +. ++|++|+|++|++++..+..|.++++|+.|++++|. +.+..+..|.++++|++|+|++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4565 44 389999999999997777789999999999999997 7777677899999999999998 99987777788
Q ss_pred cCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCc---EEEcccC-CCcccCccccCCCCCCC-EE
Q 041082 145 FNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLS---ILELQKN-SFFDLIPNTFGNLINLK-RL 219 (639)
Q Consensus 145 ~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L 219 (639)
.++++|++|++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|
T Consensus 102 ~~l~~L~~L~l~~n~l~~-------------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-------------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-------------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred CCCCCCCEEeCCCCCCcc-------------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE
Confidence 888777777777666653 233 44555665 7777777 77776666677777777 77
Q ss_pred EccCCCCCC
Q 041082 220 NLYDNYLTS 228 (639)
Q Consensus 220 ~Ls~N~l~~ 228 (639)
++++|+++.
T Consensus 162 ~l~~n~l~~ 170 (239)
T 2xwt_C 162 KLYNNGFTS 170 (239)
T ss_dssp ECCSCCCCE
T ss_pred EcCCCCCcc
Confidence 777776653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-24 Score=237.49 Aligned_cols=387 Identities=13% Similarity=0.070 Sum_probs=260.6
Q ss_pred CCc-CccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC---CccCCcccc------------CCcc
Q 041082 38 TVC-HWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF---SGSIPSSIF------------NMSS 101 (639)
Q Consensus 38 ~~c-~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~ 101 (639)
-.| .|.++.+..+ ..+.+.+ .....++..+..+++|++|+|+++.. .+.+|..++ .+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 456 6998865432 2233332 22333344567888999999988542 244554444 7899
Q ss_pred cceeeccCCcCCCCCCccccCC--CCCcEEecccccC-cc-ccCccccCCCCCCEEecCCCCCCCC----------CCCC
Q 041082 102 LLSIYFNNNTLFGEIPEELGNL--AELETLWLQNNFL-TG-TIHSSIFNLSSLSDLDLSHNNLTDV----------QIPN 167 (639)
Q Consensus 102 L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l-~~-~~p~~~~~l~~L~~L~Ls~N~l~~~----------~l~~ 167 (639)
|+.|+|++|.+.+..+..++.+ .+|++|+|++|.- +. .++....++++|++|+|++|.+++. .+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 9999999999887777777664 4599999999872 11 1222345789999999999988653 3689
Q ss_pred ccEEEccCCccC----ccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCC-CCcchhhccccCC
Q 041082 168 LENLLLWGNNFS----GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS-TPELSFLYSLSNC 242 (639)
Q Consensus 168 L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~l~~l 242 (639)
|+.|++++|.++ +.++..+.++++|+.|++++|.+.+ +|..+..+++|+.|+++....... .+....+..+.++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 999999999997 3455666788999999999999887 467788899999999985322210 1100111111111
Q ss_pred c-------------chhhhccCccEEEeecCccccccc-hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccC-
Q 041082 243 K-------------YLEQSSQSLEVFSMFNCNISGGIL-EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD- 307 (639)
Q Consensus 243 ~-------------~l~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~- 307 (639)
. .+.....+|+.|++++|.+++..+ ..+..+++|+.|+++++...+.++..+..+++|+.|++++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 1 112235689999999999776544 3467899999999994332333444456788999999993
Q ss_pred ----------CcCCCC-CchhhcCCCCCcEEECCCCcCcccCCccccC-CCCCCEEeCC----CCcCccc-----chhhh
Q 041082 308 ----------NKLEGP-IPYEFCRLASLYELDLSGNKLSGSIPTCFGN-QTSLRILSLD----SNKLISI-----IPSTL 366 (639)
Q Consensus 308 ----------N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~----~N~l~~~-----~p~~~ 366 (639)
|.+++. ++..+..+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 555533 2333456889999999888888766666655 8889999995 6778764 45557
Q ss_pred hcCCCCcEEEcccC--CCCCCCccccc-cccccccccccCCCCCCcCcceEEEecCCceeeeEEechhhhh
Q 041082 367 WNLKDILYLNLSSN--FFISPLPLEIG-NLKVLVGIDLSMNNFSGFGSIYKARIQDGMKVAVKVFDLQYER 434 (639)
Q Consensus 367 ~~l~~L~~L~ls~N--~l~~~~p~~~~-~l~~L~~l~ls~N~l~g~g~vy~~~l~~g~~vavK~l~~~~~~ 434 (639)
..+++|+.|+++.+ .+++..+..+. .+++|+.|++++|++++.+.... . .....++.++++.+.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~--~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF--S--RGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH--H--TCCTTCCEEEEESCC
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH--H--hcCcccCeeeccCCC
Confidence 77899999999743 35544444444 37889999999998875322110 0 012345666666554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-24 Score=220.33 Aligned_cols=163 Identities=19% Similarity=0.287 Sum_probs=119.4
Q ss_pred CcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCC--CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC-
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNL--SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE- 115 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 115 (639)
+..|.++.|+. ..++.++++++.+. |..+..+ ++++.|++++|.+.+..|. +..+++|+.|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 34699998864 34678999998876 4456666 8999999999999977665 66899999999999998866
Q ss_pred CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC-CCCCCCCCCccEEEccCCccCccCCccccCCCCCcE
Q 041082 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN-NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194 (639)
Q Consensus 116 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 194 (639)
+|..+..+++|++|+|++|.+++..+..+..+++|++|+|++| .+++. .+|..+..+++|+.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------ALQTLLSSCSRLDE 172 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------HHHHHHHHCTTCCE
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------HHHHHHhcCCCCCE
Confidence 8888999999999999999998888888888888888888887 56531 12333444455555
Q ss_pred EEcccC-CCccc-CccccCCCC-CCCEEEccCC
Q 041082 195 LELQKN-SFFDL-IPNTFGNLI-NLKRLNLYDN 224 (639)
Q Consensus 195 L~L~~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N 224 (639)
|++++| .+++. ++..+..++ +|++|++++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 555555 55432 344455555 6666666655
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-24 Score=222.21 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=73.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCC----ccccCCc-ccceeeccCCcCCCCCCccccCC-----CC
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIP----SSIFNMS-SLLSIYFNNNTLFGEIPEELGNL-----AE 125 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 125 (639)
..+++.|+++|.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+.+..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777766666668888888887776555 5666777 77777777777777666666654 77
Q ss_pred CcEEecccccCccccCcccc----CC-CCCCEEecCCCCCCC
Q 041082 126 LETLWLQNNFLTGTIHSSIF----NL-SSLSDLDLSHNNLTD 162 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~ 162 (639)
|++|+|++|.+++..+..+. .+ ++|++|+|++|.+++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 77777777777765555333 33 566666666666654
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-23 Score=205.18 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=128.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. ..|..+|+|+++... ......+..|+.+++. +||||+ +|+|.++
T Consensus 24 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~ 102 (275)
T 3hyh_A 24 GSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDY 102 (275)
T ss_dssp ---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHH
Confidence 46899999985 468999999986432 2234567788877553 689999 6899988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----c----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----T---- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~---- 534 (639)
+... ..++......++.+++.||+||| +.+|+||||||+|||+++++.+||+|||+|+......... +
T Consensus 103 l~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~ 178 (275)
T 3hyh_A 103 IVQR-DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYA 178 (275)
T ss_dssp HHHS-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTS
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccC
Confidence 8653 45899999999999999999999 6689999999999999999999999999998765432210 0
Q ss_pred --c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+ ...+.++||| | ||+.|..+ .+..+..+....... .+.. ....
T Consensus 179 APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~-----~~~~~~~~~i~~~~~--~~p~--------------~~s~ 237 (275)
T 3hyh_A 179 APEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-----ESIPVLFKNISNGVY--TLPK--------------FLSP 237 (275)
T ss_dssp CHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC--CCCT--------------TSCH
T ss_pred ChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHcCCC--CCCC--------------CCCH
Confidence 0 0112367888 7 88888753 122222221111100 0000 0112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++|||+.|+++
T Consensus 238 ~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 238 GAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHccCChhHCcCHHHHHc
Confidence 3567888999999999999999976
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=221.06 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=146.5
Q ss_pred cccCCCCCCCCc-----Cccce-ecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccc
Q 041082 29 LAKNWNTSSTVC-----HWTGV-SCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSL 102 (639)
Q Consensus 29 l~~~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 102 (639)
+.+ |..+.++| .|.|+ .|.. .+++.|+|++|++++ +|..+. ++|++|+|++|.|+ .+| ..+++|
T Consensus 33 l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCC
Confidence 555 87777888 69999 7864 478999999999987 777664 78999999999999 678 457899
Q ss_pred ceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccC
Q 041082 103 LSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAI 182 (639)
Q Consensus 103 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~ 182 (639)
+.|++++|++++ +|. |.+ +|++|+|++|++++ +|. .+++|+.|+|++|.|+++
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l------------------- 155 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML------------------- 155 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------------------
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-------------------
Confidence 999999999988 676 765 89999999999987 554 566677776666666543
Q ss_pred CccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcc
Q 041082 183 PHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262 (639)
Q Consensus 183 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l 262 (639)
|. .+++|+.|+|++|.+++ +|. |. ++|+.|+|++|.++..+. +. . +|
T Consensus 156 p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~-------------~L---------- 202 (571)
T 3cvr_A 156 PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VP--V-------------RN---------- 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------------------------
T ss_pred CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HH--H-------------hh----------
Confidence 33 34667777777777766 444 54 777777777777765432 10 0 11
Q ss_pred ccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCC
Q 041082 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRL 321 (639)
Q Consensus 263 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 321 (639)
....+.|+.|+|++|.|+ .+|..+..+++|+.|++++|.+++.+|..++.+
T Consensus 203 -------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 203 -------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 011122455555555555 345555555566666666666655555555543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=205.39 Aligned_cols=199 Identities=19% Similarity=0.179 Sum_probs=111.3
Q ss_pred cccceeeccCCcCCCCCCccc--cCCCCCcEEecccccCccccC----ccccCCCCCCEEecCCCCCCCC------CCCC
Q 041082 100 SSLLSIYFNNNTLFGEIPEEL--GNLAELETLWLQNNFLTGTIH----SSIFNLSSLSDLDLSHNNLTDV------QIPN 167 (639)
Q Consensus 100 ~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~------~l~~ 167 (639)
++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.++++ .+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555555 555555555555555554333 2233455555555555555442 2455
Q ss_pred ccEEEccCCccCcc--C--CccccCCCCCcEEEcccCCCcccCcc---ccCCCCCCCEEEccCCCCCCCCCcchhhcccc
Q 041082 168 LENLLLWGNNFSGA--I--PHFIFNASKLSILELQKNSFFDLIPN---TFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240 (639)
Q Consensus 168 L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 240 (639)
|++|+|++|++.+. + +..+..+++|++|++++|+++...+. .++.+++|++|+|++|.+++..|.. +.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-----~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-----AP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-----CS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-----HH
Confidence 56666666655431 1 22235667777777777777533211 2456677777777777776642210 00
Q ss_pred CCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcC
Q 041082 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCR 320 (639)
Q Consensus 241 ~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 320 (639)
.+..+++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..
T Consensus 246 ----------------------------~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 246 ----------------------------RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp ----------------------------SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred ----------------------------hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 0111246666677777666 4455443 5677777777777654 22 456
Q ss_pred CCCCcEEECCCCcCcc
Q 041082 321 LASLYELDLSGNKLSG 336 (639)
Q Consensus 321 l~~L~~L~Ls~N~l~~ 336 (639)
+++|+.|++++|.++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 6777777777777653
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-23 Score=208.38 Aligned_cols=191 Identities=22% Similarity=0.285 Sum_probs=137.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. ..|..+|+|+++... ......+..|+++++. +||||+++|+|.++
T Consensus 43 G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~ 122 (311)
T 4aw0_A 43 GSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKY 122 (311)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHH
Confidence 46899999985 468999999997543 2334567778877543 78999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--cccccc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQNTN-- 538 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~~~~-- 538 (639)
+... ..++......++.+|+.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+...... .....+
T Consensus 123 i~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp 198 (311)
T 4aw0_A 123 IRKI-GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTA 198 (311)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCG
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCc
Confidence 8753 35888888999999999999999 678999999999999999999999999999987543211 001111
Q ss_pred -------------ccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 539 -------------TCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 539 -------------~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+.++|+| | ||+.|... .+..+.......... + +... .
T Consensus 199 ~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-----~~~~~~~~~i~~~~~-~-~p~~--------------~ 257 (311)
T 4aw0_A 199 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-----GNEGLIFAKIIKLEY-D-FPEK--------------F 257 (311)
T ss_dssp GGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC-C-CCTT--------------C
T ss_pred ccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC-----CCHHHHHHHHHcCCC-C-CCcc--------------c
Confidence 2278898 7 89998753 112221111111100 0 0000 1
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
...+.++..+|++.+|++|||+.|+.
T Consensus 258 s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 258 FPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CHHHHHHHHHHccCCHhHCcChHHHc
Confidence 12356788899999999999999874
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-24 Score=220.41 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=55.3
Q ss_pred EEeccCCcCCccCCccccCCcccceeeccCCcCCCCCC----ccccCCC-CCcEEecccccCccccCccccCC-----CC
Q 041082 80 TLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP----EELGNLA-ELETLWLQNNFLTGTIHSSIFNL-----SS 149 (639)
Q Consensus 80 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 149 (639)
+++|++|.+++.+|..+...++|+.|+|++|.+.+..+ ..|..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677777777777766666667777777777776666 5666777 77777777777776655555543 55
Q ss_pred CCEEecCCCCCC
Q 041082 150 LSDLDLSHNNLT 161 (639)
Q Consensus 150 L~~L~Ls~N~l~ 161 (639)
|++|+|++|.++
T Consensus 82 L~~L~Ls~n~l~ 93 (362)
T 3goz_A 82 VTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECCSSCGG
T ss_pred ccEEECcCCcCC
Confidence 555555555544
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=206.01 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=145.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH------------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|||++....... ..+..|+..++ .+|+||+++|+|.++
T Consensus 35 G~~g~Vy~~~~~-~~~vavK~~~~~~~~~-~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~ 112 (322)
T 3soc_A 35 GRFGCVWKAQLL-NEYVAVKIFPIQDKQS-WQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF 112 (322)
T ss_dssp STTCEEEEEEET-TEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred cCceEEEEEEEC-CCEEEEEEeecCchHH-HHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHH
Confidence 568999999876 7899999987553322 23333444321 478999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccC-------CCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGY-------STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-------~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~ 533 (639)
+... .++|..+.+|+.++++||+|||..+ .++|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 113 l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~ 190 (322)
T 3soc_A 113 LKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT 190 (322)
T ss_dssp HHHC--CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCC
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCcccc
Confidence 8653 4899999999999999999999431 228999999999999999999999999999876543211 0
Q ss_pred -----c------c---------cccccccccc--c-------CCCCCCCccCCCcc-----------chHHHHHhhCCCC
Q 041082 534 -----T------Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEM-----------TLKSWVNDLLPIS 573 (639)
Q Consensus 534 -----~------~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~-----------~l~~~~~~~~~~~ 573 (639)
+ . ...+.++||| | ||+.|......... ...++........
T Consensus 191 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (322)
T 3soc_A 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKK 270 (322)
T ss_dssp TTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSC
T ss_pred ccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhccc
Confidence 0 0 0111256999 7 88888764322111 1222222111111
Q ss_pred cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 574 VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 574 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
. .+.+.. ......+...+.+++.+|++.+|++||||.||+++|+++++.
T Consensus 271 ~----~~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 271 K----RPVLRD-----YWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp C----CCCCCG-----GGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred C----CCCccc-----cccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 1 111110 011234566789999999999999999999999999998654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=202.94 Aligned_cols=219 Identities=19% Similarity=0.182 Sum_probs=169.0
Q ss_pred CcEEEEEeCCCCCcccC-Cc--CCCCCCCCCEEeccCCcCCccCCccc--cCCcccceeeccCCcCCCCCC----ccccC
Q 041082 52 YRVTTLNISGLSLTSTI-PS--ELGNLSSLQTLDLSFNWFSGSIPSSI--FNMSSLLSIYFNNNTLFGEIP----EELGN 122 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~-p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 122 (639)
.+++.+.+.+..++... .. .+..+++|++|+|++|.+.+..|..+ ..+++|++|++++|.+.+..| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45788888888775311 10 12245679999999999999999998 899999999999999998766 45668
Q ss_pred CCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC----------CCCCCccEEEccCCccCccC--Cc-cccCC
Q 041082 123 LAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD----------VQIPNLENLLLWGNNFSGAI--PH-FIFNA 189 (639)
Q Consensus 123 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----------~~l~~L~~L~L~~N~l~~~~--p~-~~~~l 189 (639)
+++|++|+|++|++++..|..+..+++|++|+|++|.+.+ ..+++|++|+|++|+++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 9999999999999999888999999999999999999754 25789999999999997322 12 35678
Q ss_pred CCCcEEEcccCCCcccCccccCCC---CCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcccccc
Q 041082 190 SKLSILELQKNSFFDLIPNTFGNL---INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGI 266 (639)
Q Consensus 190 ~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~ 266 (639)
++|++|+|++|.+.+..|..+..+ ++|++|+|++|+++..+..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---------------------------------- 269 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG---------------------------------- 269 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC----------------------------------
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh----------------------------------
Confidence 999999999999999888777776 6999999999998854321
Q ss_pred chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 267 LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 267 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+ .++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 270 ---~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 270 ---L--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ---C--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred ---h--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 1 13556666666666643 22 445566666666666654
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=200.07 Aligned_cols=207 Identities=24% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .+..+|||++..... ..+..+.+... .+|+||+++|+|.
T Consensus 19 G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 94 (301)
T 3q4u_A 19 GRYGEVWRGSW-QGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLY 94 (301)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHH
T ss_pred CCCcEEEEEEE-CCEEEEEEEeccccc---hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHH
Confidence 56899999987 588999999865432 23333333311 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+++.. ..+++..+.+|+.++|.||+|||... ..+|+||||||+||+++.++.+||+|||+|+........
T Consensus 95 ~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~ 172 (301)
T 3q4u_A 95 DYLQL--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV 172 (301)
T ss_dssp HHHTT--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEEC
T ss_pred HHHhh--cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccc
Confidence 99954 45899999999999999999999432 678999999999999999999999999999765432211
Q ss_pred ------c------ccc----------ccccccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 533 ------F------TQN----------TNTCHHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 533 ------~------~~~----------~~~~~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
. +.. ..+.++||| | || +.|..+..........+......
T Consensus 173 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~ 252 (301)
T 3q4u_A 173 GNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCV 252 (301)
T ss_dssp CCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred cccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhc
Confidence 0 000 111367888 6 77 55554433333333332222211
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.... +.+.. ......+...+.+++.+|++.+|++||||.||+++|+++
T Consensus 253 ~~~~----~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 253 DQQR----PNIPN-----RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCCC----CCCCG-----GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCC----CCCCh-----hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 1111 11100 011234667788999999999999999999999999876
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=220.73 Aligned_cols=251 Identities=20% Similarity=0.201 Sum_probs=144.1
Q ss_pred CCcCCCCCCCCCEEeccCCcCCccC----CccccCCcccceeeccCC---cCCCCCCccc-------cCCCCCcEEeccc
Q 041082 68 IPSELGNLSSLQTLDLSFNWFSGSI----PSSIFNMSSLLSIYFNNN---TLFGEIPEEL-------GNLAELETLWLQN 133 (639)
Q Consensus 68 ~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~~ 133 (639)
++..+..+++|++|+|++|.+.+.. +..+..+++|+.|+|++| ++.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4455666777888888888777553 334667777777777774 4445556554 5777778888888
Q ss_pred ccCcc----ccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCC---------CCCcEEEcccC
Q 041082 134 NFLTG----TIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNA---------SKLSILELQKN 200 (639)
Q Consensus 134 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---------~~L~~L~L~~N 200 (639)
|.+++ .+|..+..+++|++|+|++|.++.... ..++..+..+ ++|+.|++++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--------------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--------------AKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--------------HHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH--------------HHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 77776 456667777777777777776653110 0011111111 45555555555
Q ss_pred CCc-ccCc---cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCC
Q 041082 201 SFF-DLIP---NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNL 276 (639)
Q Consensus 201 ~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L 276 (639)
.+. +.+| ..+..+++|++|++++|.++.. . +....+..+..+++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----g---------------------------~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----G---------------------------IEHLLLEGLAYCQEL 218 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH----H---------------------------HHHHHHTTGGGCTTC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh----H---------------------------HHHHHHHHhhcCCCc
Confidence 554 2222 2344566666666666655410 0 000011133444555
Q ss_pred CEEECCCCCCC----ccccccccCCcCCcEEEccCCcCCCC----Cchhh--cCCCCCcEEECCCCcCcc----cCCccc
Q 041082 277 TAIYLAGNKLN----GSIPITLCKLQKLQLLSFVDNKLEGP----IPYEF--CRLASLYELDLSGNKLSG----SIPTCF 342 (639)
Q Consensus 277 ~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~ 342 (639)
+.|+|++|.++ +.+|..+..+++|+.|++++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 55555555553 34455555555666666666655543 34444 236677777777777776 355555
Q ss_pred -cCCCCCCEEeCCCCcCcccch
Q 041082 343 -GNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 343 -~~l~~L~~L~l~~N~l~~~~p 363 (639)
.++++|++|++++|.+++..+
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSH
T ss_pred HhcCCCceEEEccCCcCCcchh
Confidence 456777788888887776654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-23 Score=220.06 Aligned_cols=137 Identities=20% Similarity=0.291 Sum_probs=88.1
Q ss_pred CccEEEeecCccc-cccc---hhhcCCCCCCEEECCCCCCC--c---cccccccCCcCCcEEEccCCcCC----CCCchh
Q 041082 251 SLEVFSMFNCNIS-GGIL---EEISNLTNLTAIYLAGNKLN--G---SIPITLCKLQKLQLLSFVDNKLE----GPIPYE 317 (639)
Q Consensus 251 ~l~~l~l~~n~l~-~~~~---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~l~~N~l~----~~~p~~ 317 (639)
+|+.|++++|.++ +.++ ..+..+++|+.|++++|.++ | ..|..+..+++|+.|++++|.++ +.+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 3444444444443 2223 34556777888888888776 2 23436667777788888877775 456666
Q ss_pred hcCCCCCcEEECCCCcCccc----CCccc--cCCCCCCEEeCCCCcCcc----cchhhh-hcCCCCcEEEcccCCCCCCC
Q 041082 318 FCRLASLYELDLSGNKLSGS----IPTCF--GNQTSLRILSLDSNKLIS----IIPSTL-WNLKDILYLNLSSNFFISPL 386 (639)
Q Consensus 318 ~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~l~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 386 (639)
+..+++|+.|+|++|.+++. +|..+ +.+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777777777777777654 34444 336777777777777776 355555 55677777777777776555
Q ss_pred c
Q 041082 387 P 387 (639)
Q Consensus 387 p 387 (639)
+
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=208.58 Aligned_cols=187 Identities=22% Similarity=0.254 Sum_probs=123.8
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.+||.||++.-. .+..+|+|+++.... .....+..|+++++ ++||||+++|+|.
T Consensus 35 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~ 114 (304)
T 3ubd_A 35 GSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLF 114 (304)
T ss_dssp GGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEH
T ss_pred CCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHH
Confidence 468999998752 357899999864432 12234555655532 3799999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT--- 537 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~--- 537 (639)
+++... ..+++.....++.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.............
T Consensus 115 ~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~ 190 (304)
T 3ubd_A 115 TRLSKE-VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTV 190 (304)
T ss_dssp HHHHHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCG
T ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCc
Confidence 998753 35899999999999999999999 66899999999999999999999999999986543221111111
Q ss_pred ------------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 538 ------------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 538 ------------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+.++||| | ||+.|... .+..+.......... .. +...
T Consensus 191 ~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~-----~~~~~~~~~i~~~~~------~~----------p~~~ 249 (304)
T 3ubd_A 191 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG-----KDRKETMTMILKAKL------GM----------PQFL 249 (304)
T ss_dssp GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CC----------CTTS
T ss_pred ccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCC-----cCHHHHHHHHHcCCC------CC----------CCcC
Confidence 12378888 6 88888753 122222211111100 00 0011
Q ss_pred HHHHHHHHhhccCCCCCCCCCH
Q 041082 597 LSFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m 618 (639)
...+.++..+|++.+|++|||+
T Consensus 250 s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 250 SPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp CHHHHHHHHHHTCSSGGGSTTC
T ss_pred CHHHHHHHHHHcccCHHHCCCC
Confidence 1245678889999999999985
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-23 Score=206.55 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=128.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------------------~Lv~e 452 (639)
.+||.||++.. .+|..+|||++...... ....+..|+.+++ ++|||
T Consensus 16 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE 95 (299)
T 4g31_A 16 GGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQ 95 (299)
T ss_dssp CC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEe
Confidence 57899999986 46899999998754432 3356777777732 36899
Q ss_pred cCCCCCchhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 453 YMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 453 y~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
|+++|+|.+++.... ...++.....|+.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+..+.
T Consensus 96 ~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~ 172 (299)
T 4g31_A 96 LCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDE 172 (299)
T ss_dssp CCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCCCC-------
T ss_pred cCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEccCccceecCCCc
Confidence 999999999987532 34677778899999999999999 6689999999999999999999999999999876543
Q ss_pred CCccc------------ccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCc-ceeeec--ccccccccccc
Q 041082 531 QSFTQ------------NTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDV--NLLSMEDKYFT 591 (639)
Q Consensus 531 ~~~~~------------~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~--~l~~~~~~~~~ 591 (639)
...+. ..+|. ...++ |.+-.+..|+|+-|..+.+.+ .|... .+.+.. .+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell---~Pf~~~~~~~~~~~~~~~~--~~p~ 247 (299)
T 4g31_A 173 EEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL---YPFSTQMERVRTLTDVRNL--KFPP 247 (299)
T ss_dssp -------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHH---SCCSSHHHHHHHHHHHHTT--CCCH
T ss_pred cccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHc---cCCCCccHHHHHHHHHhcC--CCCC
Confidence 21100 01111 00011 111122234445555555443 23210 000000 00000 0011
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+......++..+|++.+|++|||+.|+++
T Consensus 248 ~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 248 LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 12233344567889999999999999999986
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=205.63 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=144.2
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.+ ..+..+|+|++..........+..|+..++ .+|+||+++|+|
T Consensus 21 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L 100 (295)
T 3ugc_A 21 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100 (295)
T ss_dssp CSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBH
T ss_pred cCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCH
Confidence 56899999974 357899999987665555566777777633 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~- 535 (639)
.+++......+++..+.+++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 177 (295)
T 3ugc_A 101 RDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPG 177 (295)
T ss_dssp HHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CT
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCC
Confidence 9999765556999999999999999999999 6689999999999999999999999999998765432110 00
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeee----ccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD----VNLLSMEDK 588 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d----~~l~~~~~~ 588 (639)
...+.++||| | ||..|..... .++.............. ..+.. ..
T Consensus 178 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 249 (295)
T 3ugc_A 178 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIVFHLIELLKN--NG 249 (295)
T ss_dssp TCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH------HHHHHHHCTTCCTHHHHHHHHHHHHT--TC
T ss_pred CCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh------HHHHhhhcCccccchhHHHHHHHHhc--cC
Confidence 0112367888 5 6666654211 11111111000000000 00000 00
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+..+...+.+++..|++.+|++|||+.|++++|+++++.+
T Consensus 250 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 250 RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred cCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 01112234456788999999999999999999999999987654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-23 Score=211.02 Aligned_cols=256 Identities=20% Similarity=0.216 Sum_probs=143.1
Q ss_pred CCCEEeccCCcCCccCCccccCC--cccceeeccCCcCCCCCCccccCCCCCcEEecccccCccc-cCccccCCCCCCEE
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNM--SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGT-IHSSIFNLSSLSDL 153 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 153 (639)
.++.+++++|.+. |..+..+ +.++.|++++|.+.+..|. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 4455555 6677777777776665554 44567777777777766544 55555555444444
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccC-CCccc-CccccCCCCCCCEEEccCC-CCCCCC
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKN-SFFDL-IPNTFGNLINLKRLNLYDN-YLTSST 230 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~ 230 (639)
+|++| ++++..|..+..+++|+.|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 124 ~L~~~------------------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 124 SLEGL------------------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp ECTTC------------------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred eCcCc------------------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 44443 333445555666667777777776 45432 4444556666666666666 54421
Q ss_pred CcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCC-CCCEEECCCC--CCC-ccccccccCCcCCcEEEcc
Q 041082 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT-NLTAIYLAGN--KLN-GSIPITLCKLQKLQLLSFV 306 (639)
Q Consensus 231 ~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~ 306 (639)
.++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+++
T Consensus 185 ----------------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 185 ----------------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ----------------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ----------------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 1233445555 6666666666 333 3344455556666666666
Q ss_pred CCc-CCCCCchhhcCCCCCcEEECCCCc-CcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 307 DNK-LEGPIPYEFCRLASLYELDLSGNK-LSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 307 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
+|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++...-..+. ..+..|+++.|.+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 666 454555556666666666666663 22111124556666667766666 3221111111 123444566677766
Q ss_pred CCcccccc
Q 041082 385 PLPLEIGN 392 (639)
Q Consensus 385 ~~p~~~~~ 392 (639)
..|..++.
T Consensus 308 ~~~~~~~~ 315 (336)
T 2ast_B 308 IARPTIGN 315 (336)
T ss_dssp TTCSSCSS
T ss_pred ccCCcccc
Confidence 66655543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=184.32 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=140.1
Q ss_pred CCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC
Q 041082 36 SSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 115 (639)
..+.|.|.+|.|+.. +++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++.+.
T Consensus 3 ~~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp TTCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 346688999999753 233 345444 35899999999999977777788999999999999999987
Q ss_pred CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEE
Q 041082 116 IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSIL 195 (639)
Q Consensus 116 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 195 (639)
.+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.++ +..+..+..+++|+.|
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ------------------SLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEE
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc------------------ccCHhHhccCCcCCEE
Confidence 7777899999999999999999777767778777777776666555 3445567778889999
Q ss_pred EcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCC
Q 041082 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLT 274 (639)
Q Consensus 196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~ 274 (639)
++++|.+++..+..|..+++|++|++++|.+.+..+ .++.++++.|+++|.+|..++.++
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------------------~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------------------GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------------------TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------------------CHHHHHHHHHhCCceeeccCcccc
Confidence 999998888777778888999999999887765321 233444555556666665555443
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-22 Score=208.90 Aligned_cols=202 Identities=25% Similarity=0.348 Sum_probs=145.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..||+|.+..... .....|..|+..++ .+|+||+++|+|.+++.
T Consensus 125 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~ 204 (377)
T 3cbl_A 125 GNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204 (377)
T ss_dssp ETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred CCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHH
Confidence 468999999986 688999999864322 22345666776643 37899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---------- 534 (639)
.....+++..+..++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 205 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y 281 (377)
T 3cbl_A 205 TEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKW 281 (377)
T ss_dssp HHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGG
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCc
Confidence 65556899999999999999999999 56799999999999999999999999999986543211100
Q ss_pred ---c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ---Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ---~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | | |+.|.... ......+++..... . ..+..+.
T Consensus 282 ~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~--~~~~~~~~~~~~~~-----~-------------~~~~~~~ 341 (377)
T 3cbl_A 282 TAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL--SNQQTREFVEKGGR-----L-------------PCPELCP 341 (377)
T ss_dssp SCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS--CHHHHHHHHHTTCC-----C-------------CCCTTCC
T ss_pred CCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC-----C-------------CCCCCCC
Confidence 0 0112378888 6 5 77776532 11112222221100 0 0112233
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+.+++.+|++.+|++||||.+|+++|+++++.
T Consensus 342 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 342 DAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 4577889999999999999999999999988654
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-22 Score=203.92 Aligned_cols=224 Identities=22% Similarity=0.281 Sum_probs=145.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... ++..+|+|.+..........+..|+..++. +|+||+++|+|.+++..
T Consensus 21 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 100 (310)
T 3s95_A 21 GCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS 100 (310)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHh
Confidence 568999999874 588999998865545556677788877542 68999999999999986
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT----------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~----------- 534 (639)
....++|.++..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 101 ~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~ 177 (310)
T 3s95_A 101 MDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRK 177 (310)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccc
Confidence 5567999999999999999999999 56799999999999999999999999999987654322100
Q ss_pred ---cccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCC--cceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 535 ---QNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPIS--VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 535 ---~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...++. ...++ |....+..|+|+-|..+.+.+....+.. ..+..+.............+..+...+.+++.
T Consensus 178 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 257 (310)
T 3s95_A 178 KRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITV 257 (310)
T ss_dssp --CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHH
T ss_pred cccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHH
Confidence 000000 00000 1111122233444444444443322211 00000000000000000001122345778899
Q ss_pred hccCCCCCCCCCHHHHHHHHHHhHHHHH
Q 041082 606 ECTAESPKQRINAKESVTRLLKIRDLLL 633 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~~l~~~~~~~~ 633 (639)
+|++.+|++||++.|+++.|+.++....
T Consensus 258 ~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 258 RCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999987653
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=188.17 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=100.2
Q ss_pred cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc-CccccCccccCCCCCCEEecCC-CCCCCCCCCCc
Q 041082 91 SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF-LTGTIHSSIFNLSSLSDLDLSH-NNLTDVQIPNL 168 (639)
Q Consensus 91 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~l~~L 168 (639)
.+|. +. .+|+.|++++|++++..+..|.++++|++|+|++|+ +++..+..|.++++|++|++++ |.++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------- 94 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT------- 94 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-------
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-------
Confidence 4555 33 377788888888777766677777888888888876 7655555666655555555544 4433
Q ss_pred cEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCC---EEEccCC-CCCCCCCcchhhccccCCcc
Q 041082 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLK---RLNLYDN-YLTSSTPELSFLYSLSNCKY 244 (639)
Q Consensus 169 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~~~l~~l~~ 244 (639)
+..+..|.++++|+.|++++|.+++ +|. |..+++|+ +|++++| .+++
T Consensus 95 -----------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~---------------- 145 (239)
T 2xwt_C 95 -----------YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS---------------- 145 (239)
T ss_dssp -----------EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE----------------
T ss_pred -----------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhh----------------
Confidence 2334445556666666666666655 233 44444444 4444444 3332
Q ss_pred hhhhccCccEEEeecCccccccchhhcCCCCCC-EEECCCCCCCccccccccCCcCCcEEEccCCc-CCCCCchhhcCC-
Q 041082 245 LEQSSQSLEVFSMFNCNISGGILEEISNLTNLT-AIYLAGNKLNGSIPITLCKLQKLQLLSFVDNK-LEGPIPYEFCRL- 321 (639)
Q Consensus 245 l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l- 321 (639)
..+..+..+++|+ .|++++|.++ .+|......++|+.|++++|+ +++..+..|..+
T Consensus 146 --------------------i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 146 --------------------IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp --------------------ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred --------------------cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 2223344555566 6666666655 233222122445555555552 444444444444
Q ss_pred CCCcEEECCCCcCc
Q 041082 322 ASLYELDLSGNKLS 335 (639)
Q Consensus 322 ~~L~~L~Ls~N~l~ 335 (639)
++|+.|++++|+++
T Consensus 205 ~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 205 SGPSLLDVSQTSVT 218 (239)
T ss_dssp BCCSEEECTTCCCC
T ss_pred cCCcEEECCCCccc
Confidence 44444554444444
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=197.05 Aligned_cols=212 Identities=27% Similarity=0.362 Sum_probs=152.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhh----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY----ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 42 G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 120 (307)
T 2nru_A 42 GGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDR 120 (307)
T ss_dssp CSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHH
Confidence 46889999987 57899999886432 223456667776643 268999999999998
Q ss_pred ccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------c
Q 041082 463 LYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------F 533 (639)
Q Consensus 463 l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~ 533 (639)
+.. ....++|..+.+|+.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ .
T Consensus 121 l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g 197 (307)
T 2nru_A 121 LSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVG 197 (307)
T ss_dssp HHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCS
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCC
Confidence 864 2346899999999999999999999 568999999999999999999999999999865432211 0
Q ss_pred cc---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC--Ccceeeeccccccccccccch
Q 041082 534 TQ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI--SVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 ~~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+. ...+.++||| | ||+.|..... ....+..+....... ...+.+++.+.. ..
T Consensus 198 ~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (307)
T 2nru_A 198 TTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHR-EPQLLLDIKEEIEDEEKTIEDYIDKKMND-------AD 269 (307)
T ss_dssp CGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTB-SSSBTTHHHHHHHTTSCCHHHHSCSSCSC-------CC
T ss_pred CcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCc-chHHHHHHHHHhhhhhhhhhhhccccccc-------cc
Confidence 00 0123378999 6 8888876432 222233333322211 123334443321 23
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
..+...+.+++.+|++.+|++||++.+|+++|+++..
T Consensus 270 ~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 5667788999999999999999999999999998854
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=192.04 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+++|++|++++|.+.. +| .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|++++. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 44556666666665553 33 45556666666666665554333 55666666666666665542 2 45555555555
Q ss_pred ecCCCCCCC
Q 041082 154 DLSHNNLTD 162 (639)
Q Consensus 154 ~Ls~N~l~~ 162 (639)
+|++|.+++
T Consensus 113 ~l~~n~l~~ 121 (308)
T 1h6u_A 113 DLTSTQITD 121 (308)
T ss_dssp ECTTSCCCC
T ss_pred ECCCCCCCC
Confidence 555555443
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-22 Score=210.28 Aligned_cols=202 Identities=22% Similarity=0.423 Sum_probs=137.0
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+.... ......|..|+.+++ .+||||+++|+|.+
T Consensus 56 G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~ 135 (373)
T 2qol_A 56 GEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135 (373)
T ss_dssp CSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHH
Confidence 468999999865 46789999987543 233456777777743 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ--- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~--- 535 (639)
+++.....++|.++..|+.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 136 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 212 (373)
T 2qol_A 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKI 212 (373)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------------------
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCc
Confidence 99876667999999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 536 ------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | | |+.|.... ....+.+.+.. . ... ..+
T Consensus 213 ~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~--~~~~~~~~i~~---~---------~~~------~~~ 272 (373)
T 2qol_A 213 PIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM--SNQDVIKAVDE---G---------YRL------PPP 272 (373)
T ss_dssp -CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC--CHHHHHHHHHT---T---------EEC------CCC
T ss_pred CCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc---C---------CCC------CCC
Confidence 0112367888 6 4 77776431 11111111110 0 000 011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+...+.+++.+|++.+|++||+|.||+++|+++...
T Consensus 273 ~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 273 MDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp TTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 22344678899999999999999999999999988643
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-22 Score=212.08 Aligned_cols=200 Identities=22% Similarity=0.385 Sum_probs=146.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++....+..||||.+..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 199 G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 277 (454)
T 1qcf_A 199 GQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKGSLLDFLKSDE 277 (454)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHHSHH
T ss_pred CCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCCcHHHHHHhcc
Confidence 568999999998889999999875432 34677778877542 689999999999999753
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~------ 534 (639)
...+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++........ .+
T Consensus 278 ~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP 354 (454)
T 1qcf_A 278 GSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAP 354 (454)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCH
Confidence 235889999999999999999999 567999999999999999999999999999876432110 00
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ....+...+..... ...+..+...+
T Consensus 355 E~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~--~~~~~~~~i~~~~~------------------~~~~~~~~~~l 414 (454)
T 1qcf_A 355 EAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNPEVIRALERGYR------------------MPRPENCPEEL 414 (454)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHHTCC------------------CCCCTTSCHHH
T ss_pred HHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 77776531 11112222211110 01112334567
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++.+|++.+|++||||.+|+++|+.+..
T Consensus 415 ~~li~~cl~~dp~~RPt~~~i~~~L~~~~~ 444 (454)
T 1qcf_A 415 YNIMMRCWKNRPEERPTFEYIQSVLDDFYT 444 (454)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence 889999999999999999999999987743
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=197.46 Aligned_cols=210 Identities=24% Similarity=0.334 Sum_probs=138.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++... +..+|||++..... ..+..+.+.. ..+|+||+++|+|.
T Consensus 48 G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 123 (337)
T 3mdy_A 48 GRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLY 123 (337)
T ss_dssp ETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHH
T ss_pred CCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHH
Confidence 468999999876 88999999864432 1222222221 13789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT- 534 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~- 534 (639)
+++... .+++..+..++.+++.||+|||..+ .++|+||||||+||+++.++.+||+|||+|+..........
T Consensus 124 ~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~ 201 (337)
T 3mdy_A 124 DYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDI 201 (337)
T ss_dssp HHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred HHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccC
Confidence 998643 5899999999999999999999431 33899999999999999999999999999976543321100
Q ss_pred ---ccccc---------------c------ccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 535 ---QNTNT---------------C------HHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 535 ---~~~~~---------------~------~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
...++ . ++||| | || +.|.............+......
T Consensus 202 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 281 (337)
T 3mdy_A 202 PPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCI 281 (337)
T ss_dssp -CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred CCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhh
Confidence 00000 1 26887 5 66 33333222222222222111111
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
......+.. .....++...+.+++.+|++.+|++|||+.||+++|+.+.+.
T Consensus 282 ~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 282 KKLRPSFPN---------RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp SCCCCCCCG---------GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred hccCccccc---------cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence 111111100 011246778899999999999999999999999999988764
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=193.47 Aligned_cols=201 Identities=24% Similarity=0.384 Sum_probs=145.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 21 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 99 (269)
T 4hcu_A 21 GQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ 99 (269)
T ss_dssp CSSCEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTT
T ss_pred CCccEEEEEEecCCCeEEEEEecccccC-HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhc
Confidence 5689999999988889999998754322 345677777643 2689999999999999765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ . +
T Consensus 100 ~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 176 (269)
T 4hcu_A 100 RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 176 (269)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCH
Confidence 667899999999999999999999 667999999999999999999999999999866432110 0 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ...+.+...... .....+. .....+
T Consensus 177 E~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~-----~~~~~~~~~~~~--~~~~~~~-------------~~~~~~ 236 (269)
T 4hcu_A 177 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTG--FRLYKPR-------------LASTHV 236 (269)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTT--CCCCCCT-------------TSCHHH
T ss_pred HHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHhcC--ccCCCCC-------------cCCHHH
Confidence 0 1123378888 6 6 77776531 111111111111 0011111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+++..|++.+|++||++.|++++|+++.+.
T Consensus 237 ~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 237 YQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 7788899999999999999999999998753
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=199.76 Aligned_cols=203 Identities=25% Similarity=0.352 Sum_probs=143.2
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++
T Consensus 92 G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 171 (370)
T 2psq_A 92 GCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171 (370)
T ss_dssp CSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred CCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCC
Confidence 468999999753 346799999865432 234556677766442 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..++|..+.+++.++++||+||| ..+|+||||||.||+++.++.+||+|||
T Consensus 172 g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG 248 (370)
T 2psq_A 172 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFG 248 (370)
T ss_dssp CBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCS
T ss_pred CCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEECCCCCEEEcccc
Confidence 99999886422 34899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++........ ... ...+.++||| | | |+.|.... ....+...+.....
T Consensus 249 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~--- 323 (370)
T 2psq_A 249 LARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGHR--- 323 (370)
T ss_dssp SCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCC---
T ss_pred CCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHhcCCC---
Confidence 99866543211 000 0122367888 6 6 77776532 11122222211100
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+.+..+...+.+++..|++.+|++||++.|+++.|+++....
T Consensus 324 ---------------~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 324 ---------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp ---------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0011223345778899999999999999999999999987543
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-22 Score=206.75 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=141.8
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhhhhhhhHH-----------HHHHHH-----------------------
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYERAFKSFD-----------VACDMM----------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~~~~~~f~-----------~e~~~~----------------------- 446 (639)
.++|.||++.... +..+|+|++.........+.. .++...
T Consensus 46 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~ 125 (364)
T 3op5_A 46 GGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS 125 (364)
T ss_dssp C-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEE
T ss_pred CCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcc
Confidence 5689999998764 478999998654322111111 111110
Q ss_pred -HhhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeecccccc
Q 041082 447 -KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMA 523 (639)
Q Consensus 447 -~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla 523 (639)
..+||||+ +|+|.+++......++|..+..|+.+++.||+||| ..+|+||||||+||+++ .++.+||+|||+|
T Consensus 126 ~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a 201 (364)
T 3op5_A 126 YRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA 201 (364)
T ss_dssp EEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSCTTCEEECCCTTC
T ss_pred eEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCCCCeEEEEECCcc
Confidence 24789999 99999998765567999999999999999999999 56899999999999999 8899999999999
Q ss_pred ccccccCCCcc-------c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC
Q 041082 524 KLLLKEDQSFT-------Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI 572 (639)
Q Consensus 524 ~~~~~~~~~~~-------~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~ 572 (639)
+.+........ . ...+.++||| | ||+.|....... .....+.......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~~~~~~~~~~~~~ 280 (364)
T 3op5_A 202 YRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-PKYVRDSKIRYRE 280 (364)
T ss_dssp EESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-HHHHHHHHHHHHH
T ss_pred eecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-HHHHHHHHHHhhh
Confidence 87654321100 0 0112367888 6 888887643222 1222222222222
Q ss_pred CcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 573 SVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 573 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+.. ..+...+.+++..|++.+|++||+|.+|++.|+++...
T Consensus 281 ~~~~~~~~~~~~---------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~ 330 (364)
T 3op5_A 281 NIASLMDKCFPA---------ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA 330 (364)
T ss_dssp CHHHHHHHHSCT---------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccc---------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 222222222210 11234577888899999999999999999999987654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=183.32 Aligned_cols=156 Identities=27% Similarity=0.242 Sum_probs=98.5
Q ss_pred cEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCC
Q 041082 253 EVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332 (639)
Q Consensus 253 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 332 (639)
+.|++++|.+.+..+..+..+++|++|+|++|.+++..|..+..+++|++|++++|++++..+..|..+++|+.|+|++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 33333334443334444556666666666666666665656666666666666666666666666666666666666666
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 333 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
.+++..+..|..+++|++|++++|++.++.+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|+|.+
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666555556666666666666666666666566666666666666666666555566666666666666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=190.29 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=108.6
Q ss_pred EEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 128 TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 128 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
.+.+..+.++..+ .+..+++|++|++++|.++.+ | .+..+++|+.|++++|.+.+..+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-------------------~-~~~~l~~L~~L~L~~n~i~~~~~ 80 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-------------------E-GVQYLNNLIGLELKDNQITDLAP 80 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-------------------T-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-------------------h-hhhccCCCCEEEccCCcCCCChh
Confidence 3344555554432 234556666666666666543 2 23445555555555555554433
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN 287 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 287 (639)
+..+++|++|++++|.+++.+ .+.. ..+|+.|++++|.+.+. + .+..+++|+.|++++|.++
T Consensus 81 --~~~l~~L~~L~L~~n~l~~~~-------~~~~-------l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 81 --LKNLTKITELELSGNPLKNVS-------AIAG-------LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp --GTTCCSCCEEECCSCCCSCCG-------GGTT-------CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred --HccCCCCCEEEccCCcCCCch-------hhcC-------CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC
Confidence 555555555555555554321 0000 11223333333333221 1 2455666666666666665
Q ss_pred ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 288 GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 288 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..| +.
T Consensus 143 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~ 214 (308)
T 1h6u_A 143 NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214 (308)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence 4333 5556666666666666654333 5566666666666666654433 5556666666666666655443 55
Q ss_pred cCCCCcEEEcccCCCCC
Q 041082 368 NLKDILYLNLSSNFFIS 384 (639)
Q Consensus 368 ~l~~L~~L~ls~N~l~~ 384 (639)
.+++|+.|++++|++++
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 55666666666665543
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-22 Score=203.09 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=143.7
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|||.+.... ......+..|+..++ .+||||+++|+|.+
T Consensus 60 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 139 (325)
T 3kul_A 60 GDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139 (325)
T ss_dssp TTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHH
T ss_pred CCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHH
Confidence 568999999874 34569999987543 233456777777643 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ--- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~--- 535 (639)
++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 140 ~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 216 (325)
T 3kul_A 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKI 216 (325)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---C
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCC
Confidence 99765567999999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 536 ------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 536 ------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
...+.++||| | | |+.|.... ....+...+...... ..+
T Consensus 217 t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~ 276 (325)
T 3kul_A 217 PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM--TNRDVISSVEEGYRL------------------PAP 276 (325)
T ss_dssp CGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS--CHHHHHHHHHTTCCC------------------CCC
T ss_pred cccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHHcCCCC------------------CCC
Confidence 0112267888 6 5 77776431 111111111111000 001
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+...+.+++..|++.+|++||+|.||+++|+.+...
T Consensus 277 ~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 277 MGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 12234577889999999999999999999999988653
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=196.17 Aligned_cols=204 Identities=26% Similarity=0.354 Sum_probs=135.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. .|..+|+|++.... ......+..|+..++ .+|+||+++|+|.+++.
T Consensus 48 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 126 (309)
T 3p86_A 48 GSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLH 126 (309)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHH
T ss_pred CCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHh
Confidence 46899999987 57889999986443 223345667776644 26899999999999987
Q ss_pred cCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 465 SSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 465 ~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
... ..+++..+..++.++++||+|||.. .++|+||||||+||+++.++.+||+|||+++..........
T Consensus 127 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y 205 (309)
T 3p86_A 127 KSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEW 205 (309)
T ss_dssp STTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTT
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccc
Confidence 633 2489999999999999999999942 23499999999999999999999999999986543321100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ........+.. ..... +.+..+..
T Consensus 206 ~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~--~~~~~~~~~~~--~~~~~---------------~~~~~~~~ 266 (309)
T 3p86_A 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL--NPAQVVAAVGF--KCKRL---------------EIPRNLNP 266 (309)
T ss_dssp SCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS--CHHHHHHHHHH--SCCCC---------------CCCTTSCH
T ss_pred cChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHh--cCCCC---------------CCCccCCH
Confidence 01123367777 5 777776431 11111111110 00000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+++.+|++.+|++||++.||++.|+.+...
T Consensus 267 ~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 267 QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 567788999999999999999999999988654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=225.75 Aligned_cols=344 Identities=14% Similarity=0.133 Sum_probs=213.1
Q ss_pred CcEEEEEeCCCCCc---ccCCcC------------CCCCCCCCEEeccCCcCCccCCcccc-CCcccceeeccCC-cCCC
Q 041082 52 YRVTTLNISGLSLT---STIPSE------------LGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNN-TLFG 114 (639)
Q Consensus 52 ~~v~~L~L~~~~l~---~~~p~~------------l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~ 114 (639)
.+++.|+++++... +..|.. ...+++|++|+|++|.+++..+..+. .+++|+.|++++| .+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 35778888876532 122222 23577899999999988877776775 6889999999988 4433
Q ss_pred C-CCccccCCCCCcEEecccccCccccCccc----cCCCCCCEEecCCCC--CCC-------CCCCCccEEEccCCccCc
Q 041082 115 E-IPEELGNLAELETLWLQNNFLTGTIHSSI----FNLSSLSDLDLSHNN--LTD-------VQIPNLENLLLWGNNFSG 180 (639)
Q Consensus 115 ~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~Ls~N~--l~~-------~~l~~L~~L~L~~N~l~~ 180 (639)
. ++..+.++++|++|+|++|.+++..+..+ ..+++|+.|++++|. ++. ..+++|+.|+|++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 44445578999999999998876544433 367789999999886 322 125889999999883323
Q ss_pred cCCccccCCCCCcEEEcccCC--------------------------Ccc----cCccccCCCCCCCEEEccCCCCCCCC
Q 041082 181 AIPHFIFNASKLSILELQKNS--------------------------FFD----LIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 181 ~~p~~~~~l~~L~~L~L~~N~--------------------------l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
.+|..+..+++|+.|+++.+. +.. .++..+..+++|++|++++|.++..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~- 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY- 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH-
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH-
Confidence 366666677777777755442 111 1222233567888888888875531
Q ss_pred CcchhhccccCCcchhhhccCccEEEeecCccccc-cchhhcCCCCCCEEECC---------CCCCCcccccccc-CCcC
Q 041082 231 PELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG-ILEEISNLTNLTAIYLA---------GNKLNGSIPITLC-KLQK 299 (639)
Q Consensus 231 ~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~-~~~~~~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l~~ 299 (639)
.... +....++|+.|++++| +... ++.....+++|+.|+++ .+.+++.....+. .+++
T Consensus 305 ---~l~~-------~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 305 ---DLVK-------LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ---HHHH-------HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred ---HHHH-------HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 0000 0112346777777776 3322 22223347778888773 3444433222222 3677
Q ss_pred CcEEEccCCcCCCCCchhhc-CCCCCcEEECC--C----CcCcccC-----CccccCCCCCCEEeCCCCcCcccchhhhh
Q 041082 300 LQLLSFVDNKLEGPIPYEFC-RLASLYELDLS--G----NKLSGSI-----PTCFGNQTSLRILSLDSNKLISIIPSTLW 367 (639)
Q Consensus 300 L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 367 (639)
|+.|.+..|++++.....+. .+++|+.|+++ + |.++... +..+..+++|+.|++++ .+++..+..+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 77777777777655444443 46778888877 3 4444211 12245667778888866 55555444444
Q ss_pred c-CCCCcEEEcccCCCCCCCcccc-ccccccccccccCCCCCC
Q 041082 368 N-LKDILYLNLSSNFFISPLPLEI-GNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 368 ~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~l~ls~N~l~g 408 (639)
. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 4 6777888888777655444444 556777778888777743
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=208.66 Aligned_cols=198 Identities=21% Similarity=0.355 Sum_probs=145.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..||||.+..... ....|..|+..++. +|+||+++|+|.+++..
T Consensus 231 G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~ 309 (495)
T 1opk_A 231 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 309 (495)
T ss_dssp GTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred CCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHh
Confidence 4689999999865 78999999875432 34567777777543 68999999999999875
Q ss_pred -CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc--------
Q 041082 466 -SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ-------- 535 (639)
Q Consensus 466 -~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~-------- 535 (639)
....+++..+..|+.++|+||+||| ..+|+||||||+|||++.++.+||+|||+++......... ..
T Consensus 310 ~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~ 386 (495)
T 1opk_A 310 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 386 (495)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGC
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCccee
Confidence 3346899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred -------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | | |+.|.... ....+.+.+..... ...+..+..
T Consensus 387 aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~ 446 (495)
T 1opk_A 387 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYR------------------MERPEGCPE 446 (495)
T ss_dssp CHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCC------------------CCCCTTCCH
T ss_pred CHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCCCCH
Confidence 0112378888 6 6 77776532 11122222221110 011122344
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+++.+|++.+|++||+|.+|+++|+.+
T Consensus 447 ~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 447 KVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 677889999999999999999999999886
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-22 Score=211.77 Aligned_cols=198 Identities=26% Similarity=0.348 Sum_probs=143.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +..+|||.+.... ....|..|+..++ .+|+||+++|+|.+++..
T Consensus 204 G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~ 280 (450)
T 1k9a_A 204 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 280 (450)
T ss_dssp CSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHH
T ss_pred cCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHh
Confidence 468999999886 6799999987543 3456777777743 268999999999999976
Q ss_pred CC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c--------
Q 041082 466 SN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T-------- 534 (639)
Q Consensus 466 ~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~-------- 534 (639)
.. ..+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 281 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~ 357 (450)
T 1k9a_A 281 RGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 357 (450)
T ss_dssp HCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHH
Confidence 33 34799999999999999999999 5689999999999999999999999999998654321110 0
Q ss_pred --ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 --QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 --~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.++||| | | |+.|..... ...+...+..... ...+..+...+.+
T Consensus 358 ~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~~~~------------------~~~p~~~~~~l~~ 417 (450)
T 1k9a_A 358 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEKGYK------------------MDAPDGCPPAVYD 417 (450)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--TTTHHHHHHTTCC------------------CCCCTTCCHHHHH
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCCC------------------CCCCCcCCHHHHH
Confidence 01123378888 6 5 777765321 1122222221100 0111233456778
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
++..|++.+|++|||+.++++.|+.+..
T Consensus 418 li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 418 VMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 8999999999999999999999998865
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=180.31 Aligned_cols=164 Identities=24% Similarity=0.267 Sum_probs=139.2
Q ss_pred CCCCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcC
Q 041082 33 WNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112 (639)
Q Consensus 33 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 112 (639)
|....+.|+|.+|.|+.. +++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 667789999999999752 233 4666554 8999999999999998899999999999999999999
Q ss_pred CCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCC
Q 041082 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKL 192 (639)
Q Consensus 113 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 192 (639)
....+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.|+ .+|..+..+++|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------------~lp~~~~~l~~L 137 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-------------------ELPRGIERLTHL 137 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------SCCTTGGGCTTC
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-------------------ccCcccccCCCC
Confidence 8777778899999999999999999887777888888887777777665 456667788899
Q ss_pred cEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCC
Q 041082 193 SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
+.|+|++|++.+..+..|..+++|+.|++++|.+....
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999998888788999999999999999887643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=195.41 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCcCccceecCCCC---------CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCc-cccCCcccce-ee
Q 041082 38 TVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLS-IY 106 (639)
Q Consensus 38 ~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~-L~ 106 (639)
+.|.|..|.|+... ..++.|+|++|.|+...+..|.++++|++|+|++|.+.+.+|. .|.++++|+. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 44678788886421 2345555555555543334455555555555555555443432 3445554443 33
Q ss_pred ccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC-CCCCCCC------C-CCccEEEccCCcc
Q 041082 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH-NNLTDVQ------I-PNLENLLLWGNNF 178 (639)
Q Consensus 107 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~------l-~~L~~L~L~~N~l 178 (639)
++.|++....|..|..+++|++|++++|++++..+..+....++..|++.. |.++.+. + ..++.|+|++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 444555555555555555555555555555544444444444455555432 3333321 1 2344555555555
Q ss_pred CccCCccccCCCCCcEEEccc-CCCcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 179 SGAIPHFIFNASKLSILELQK-NSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 179 ~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+. +|...+...+|+.+++++ |.+..+.++.|+.+++|++|++++|+++..
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 43 222223334455555543 333333334455555555555555555443
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-21 Score=198.40 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=140.3
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+. .+++|.+.... ......+..|+..++. +|++|+++|+|.+
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~g~L~~ 105 (327)
T 3poz_A 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 105 (327)
T ss_dssp ETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCcHHH
Confidence 468999999854 444 35778775332 2334567777766543 6889999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+......... ..
T Consensus 106 ~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t 182 (327)
T 3poz_A 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 182 (327)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCcc
Confidence 99876667999999999999999999999 5689999999999999999999999999998765432210 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+...+...... ..+.
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~ 242 (327)
T 3poz_A 183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERL------------------PQPP 242 (327)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCC------------------CCCT
T ss_pred ccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC--CHHHHHHHHHcCCCC------------------CCCc
Confidence 0112378888 6 6 77777532 122233332211100 0011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++.+|++.+|++||+|.||+++|+.+...
T Consensus 243 ~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 243 ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 2234577899999999999999999999999987643
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=194.56 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=139.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..||||++..........+..|+..++ .+||||+++|+|.+++..
T Consensus 56 G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 135 (321)
T 2c30_A 56 GSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ 135 (321)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT
T ss_pred CCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh
Confidence 468999999876 68999999998765555566777777643 278999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 136 --~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP 210 (321)
T 2c30_A 136 --VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAP 210 (321)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCH
Confidence 35899999999999999999999 568999999999999999999999999999876543211000
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|.... ........+....+ +.+.. .......+.
T Consensus 211 E~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~l~ 272 (321)
T 2c30_A 211 EVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD--SPVQAMKRLRDSPP--------PKLKN--------SHKVSPVLR 272 (321)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSSC--------CCCTT--------GGGSCHHHH
T ss_pred hhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhcCCC--------CCcCc--------cccCCHHHH
Confidence 1122367888 6 788776531 11111111211111 11100 011123466
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||++.|+++
T Consensus 273 ~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 273 DFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHccCChhhCcCHHHHhc
Confidence 7888999999999999999986
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=207.25 Aligned_cols=199 Identities=23% Similarity=0.371 Sum_probs=141.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.++|.||++...++..+|||.+..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 195 G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~gsL~~~l~~~~ 273 (452)
T 1fmk_A 195 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGET 273 (452)
T ss_dssp CSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHH
T ss_pred CCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCCCHHHHHHhcC
Confidence 468999999998888899999875432 23567777777543 689999999999999752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------------ 534 (639)
...+++..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 274 ~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aP 350 (452)
T 1fmk_A 274 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 350 (452)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCH
Confidence 245899999999999999999999 56899999999999999999999999999987653321100
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... .-.+.......... ...+..+...+
T Consensus 351 E~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~-----~~~~~~~~i~~~~~---------------~~~~~~~~~~l 410 (452)
T 1fmk_A 351 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGYR---------------MPCPPECPESL 410 (452)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTCC---------------CCCCTTSCHHH
T ss_pred hHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCCC---------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 77776531 11111111111100 01112334467
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+++.+|++.+|++||||.++++.|+.+.
T Consensus 411 ~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 411 HDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 78999999999999999999999998764
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=200.92 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=140.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gsL 459 (639)
.++|.||++.. .+..+|||++...... .+..+.++. ..+|+||+++|+|
T Consensus 24 G~~g~Vy~~~~-~~~~vavK~~~~~~~~---~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L 99 (336)
T 3g2f_A 24 GRYGAVYKGSL-DERPVAVKVFSFANRQ---NFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSL 99 (336)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEEEGGGHH---HHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBH
T ss_pred CCCeEEEEEEE-CCeEEEEEEeeccchh---hHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcH
Confidence 56899999976 5789999998754322 222232221 0378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccC------CCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGY------STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~------~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
.+++... ..+|..+.+|+.++++||+|||..+ .++|+||||||+||+++.++.+||+|||+++.+......
T Consensus 100 ~~~l~~~--~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~ 177 (336)
T 3g2f_A 100 XKYLSLH--TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVR 177 (336)
T ss_dssp HHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC-
T ss_pred HHHHhhc--ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccC
Confidence 9998643 3589999999999999999999542 228999999999999999999999999999876432110
Q ss_pred ------------c------cc-----------cccccccccc--c-------CCCCCCCccCCC-c--c----------c
Q 041082 533 ------------F------TQ-----------NTNTCHHRIY--G-------TRRNPQMNFFSG-E--M----------T 561 (639)
Q Consensus 533 ------------~------~~-----------~~~~~~~dvy--G-------tg~~p~~~~~~~-~--~----------~ 561 (639)
. +. ...+.++||| | ||+.|....... . . .
T Consensus 178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 257 (336)
T 3g2f_A 178 PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPT 257 (336)
T ss_dssp --------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCC
T ss_pred ccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCch
Confidence 0 00 0011257888 6 665543221110 0 0 0
Q ss_pred hHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHhh
Q 041082 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 562 l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
..++......... .+.+.. .......+...+.+++.+|++.+|++|||+.||+++|+++...+.++-
T Consensus 258 ~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~ 324 (336)
T 3g2f_A 258 FEDMQVLVSREKQ----RPKFPE----AWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK 324 (336)
T ss_dssp HHHHHHHHTTSCC----CCCCCT----TCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHhhhccccc----CCCCCc----ccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence 0000000000000 000000 011123456678999999999999999999999999999987765543
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=197.79 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=148.3
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. ..+..+|+|.+..........+..|+..++ .+|+||+++|+|
T Consensus 52 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L 131 (326)
T 2w1i_A 52 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 131 (326)
T ss_dssp CSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBH
T ss_pred CCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCH
Confidence 46889999974 357899999987655555566777777643 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~- 535 (639)
.+++......+++..+.+++.++++||+||| ..+|+||||||.||+++.++.+||+|||+++........ ...
T Consensus 132 ~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~ 208 (326)
T 2w1i_A 132 RDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPG 208 (326)
T ss_dssp HHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCC
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCC
Confidence 9999765556899999999999999999999 568999999999999999999999999999876543211 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc--------ceeeeccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV--------MEVVDVNLLS 584 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~--------~~~~d~~l~~ 584 (639)
...+.++||| | ||+.|.... ..++......... .+.+....
T Consensus 209 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 280 (326)
T 2w1i_A 209 ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP------PAEFMRMIGNDKQGQMIVFHLIELLKNNG-- 280 (326)
T ss_dssp SCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH------HHHHHHHHCTTCCTHHHHHHHHHHHHTTC--
T ss_pred CCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC------HHHHHHhhccccchhhhHHHHHHHhhcCC--
Confidence 0112368888 6 777665421 0111111000000 00000000
Q ss_pred cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 585 MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+..+...+.+++.+|++.+|++||++.||+++|+.+++.+
T Consensus 281 ----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 281 ----RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp ----CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 00111223456778999999999999999999999999998765
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=192.35 Aligned_cols=210 Identities=22% Similarity=0.325 Sum_probs=146.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .+..+|+|.+..... ..+..|.+.++ .+|+||+++|+|.
T Consensus 53 G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~ 128 (342)
T 1b6c_B 53 GRFGEVWRGKW-RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLF 128 (342)
T ss_dssp ETTEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHH
T ss_pred CCCcEEEEEEE-cCccEEEEEeCchhH---HHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHH
Confidence 46889999987 488999999865432 33444444321 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+++.. ..+++..+.+++.++|+||+|||... ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 129 ~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~ 206 (342)
T 1b6c_B 129 DYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 206 (342)
T ss_dssp HHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEE
T ss_pred HHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceecccccccccc
Confidence 99864 35899999999999999999999432 468999999999999999999999999999766543210
Q ss_pred ------c------ccc----------ccccccccc--c-------CC----------CCCCCccCCCccchHHHHHhhCC
Q 041082 533 ------F------TQN----------TNTCHHRIY--G-------TR----------RNPQMNFFSGEMTLKSWVNDLLP 571 (639)
Q Consensus 533 ------~------~~~----------~~~~~~dvy--G-------tg----------~~p~~~~~~~~~~l~~~~~~~~~ 571 (639)
. +.. ..+.++||| | || ..|.............+......
T Consensus 207 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 286 (342)
T 1b6c_B 207 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE 286 (342)
T ss_dssp CCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred ccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHH
Confidence 0 000 011367888 6 77 44544333233334444333222
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
... .+.+... ....++...+.+++.+|++.+|++||++.||+++|+++.+.
T Consensus 287 ~~~----~~~~~~~-----~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 287 QKL----RPNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SCC----CCCCCGG-----GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHh----CCCCccc-----ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 211 1111110 01235677889999999999999999999999999998654
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-21 Score=191.44 Aligned_cols=200 Identities=23% Similarity=0.356 Sum_probs=142.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|++...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 35 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 113 (283)
T 3gen_A 35 GQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM 113 (283)
T ss_dssp --CEEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCG
T ss_pred CCCceEEEEEEcCCCeEEEEEecCCCCC-HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHh
Confidence 4688999999998889999998754322 345667776643 2689999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++.++..++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........ . +
T Consensus 114 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 190 (283)
T 3gen_A 114 RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 190 (283)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCH
Confidence 556999999999999999999999 568999999999999999999999999999866432110 0 0
Q ss_pred ----ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | | |+.|.... .-.+........ .....+. .....+
T Consensus 191 E~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~-----~~~~~~~~~~~~--~~~~~~~-------------~~~~~l 250 (283)
T 3gen_A 191 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-----TNSETAEHIAQG--LRLYRPH-------------LASEKV 250 (283)
T ss_dssp HHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTT--CCCCCCT-------------TCCHHH
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc-----ChhHHHHHHhcc--cCCCCCC-------------cCCHHH
Confidence 01123367888 6 6 77776531 111111111110 0000111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++..|++.+|++||++.|+++.|+++.+
T Consensus 251 ~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 251 YTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 778899999999999999999999998864
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=199.45 Aligned_cols=203 Identities=20% Similarity=0.295 Sum_probs=140.9
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|||++..... .....+..|+.+++ .+|+||+++|
T Consensus 33 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g 112 (359)
T 3vhe_A 33 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 112 (359)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTE
T ss_pred CCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCC
Confidence 56899999974 3457899999875432 22345666666533 2679999999
Q ss_pred CchhccccCC-----------------------------------------------------------------ccCCH
Q 041082 458 SLEKCLYSSN-----------------------------------------------------------------YILDI 472 (639)
Q Consensus 458 sL~~~l~~~~-----------------------------------------------------------------~~l~~ 472 (639)
+|.+++.... ..+++
T Consensus 113 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (359)
T 3vhe_A 113 NLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTL 192 (359)
T ss_dssp EHHHHHHTTTTSBCSCC------------------------------------------------------CTTTTCBCH
T ss_pred cHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCH
Confidence 9999886522 12889
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--ccc---------------
Q 041082 473 FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQ--------------- 535 (639)
Q Consensus 473 ~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~--------------- 535 (639)
..+.+++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 193 ~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~ 269 (359)
T 3vhe_A 193 EHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD 269 (359)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcC
Confidence 999999999999999999 568999999999999999999999999999866433211 000
Q ss_pred cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 536 NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 536 ~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...+.++||| | | |+.|....... ..+...+....... . +..+...+.+++.
T Consensus 270 ~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~-----~-------------~~~~~~~l~~li~ 330 (359)
T 3vhe_A 270 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-----A-------------PDYTTPEMYQTML 330 (359)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHHHHHTCCCC-----C-------------CTTCCHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHHHHcCCCCC-----C-------------CCCCCHHHHHHHH
Confidence 1122378888 6 6 77776532111 11111111111000 0 0112234677889
Q ss_pred hccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 606 ECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.|++.+|++||+|.||+++|+++..+
T Consensus 331 ~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 331 DCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHccCChhhCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-20 Score=188.89 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=79.5
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCc-cccCCCCCcE-Eeccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPE-ELGNLAELET-LWLQN 133 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~-L~L~~ 133 (639)
.++.++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.++++|++ +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4678888887 5677663 6889999999999865556788899999999999988776654 5788888765 66677
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|+++...|..|..+++|++|++++|.++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred CcccccCchhhhhcccccccccccccccc
Confidence 88887777778877777777766666553
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-22 Score=196.31 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=144.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|.+...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 19 G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 97 (268)
T 3sxs_A 19 GQFGVVKLGKWKGQYDVAVKMIKEGSMS-EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSH 97 (268)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECBTTBC-HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHH
T ss_pred CCCceEEEEEecCceeEEEEEeccCCCc-HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHc
Confidence 4688999999988889999998754322 345666666643 2789999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc--------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ-------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~-------- 535 (639)
...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 98 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 174 (268)
T 3sxs_A 98 GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAP 174 (268)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCH
Confidence 556899999999999999999999 5689999999999999999999999999998665432110 00
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | | |+.|.... .-.+......... ....+. .....+
T Consensus 175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~--~~~~~~-------------~~~~~l 234 (268)
T 3sxs_A 175 EVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY-----TNSEVVLKVSQGH--RLYRPH-------------LASDTI 234 (268)
T ss_dssp HHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTTC--CCCCCT-------------TSCHHH
T ss_pred HHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc-----ChHHHHHHHHcCC--CCCCCC-------------cChHHH
Confidence 0122378888 6 6 77776421 1111111111110 011111 112246
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+++..|++.+|++|||+.|+++.|+.+++.
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 235 YQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 7788999999999999999999999988654
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=197.67 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=141.6
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..... .....+..|++.++. +|+||+++
T Consensus 80 G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 159 (382)
T 3tt0_A 80 GAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 159 (382)
T ss_dssp CSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred CCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCC
Confidence 568999999853 235799999865432 233456666666432 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..+++..+.+|+.++++||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 160 g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DFG 236 (382)
T 3tt0_A 160 GNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFG 236 (382)
T ss_dssp CBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSCS
T ss_pred CcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEcCCCcEEEcccC
Confidence 99999886422 35899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+|+........ ... ...+.++||| | | |+.|.... ....+.+.+......
T Consensus 237 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~-- 312 (382)
T 3tt0_A 237 LARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--PVEELFKLLKEGHRM-- 312 (382)
T ss_dssp CCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCCC--
T ss_pred cccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCCC--
Confidence 99876543211 000 0112368888 6 6 77776531 111122222111100
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+ .+..+...+.+++..|++.+|++||+|.||++.|+++...
T Consensus 313 -~---------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 353 (382)
T 3tt0_A 313 -D---------------KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 353 (382)
T ss_dssp -C---------------CCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -C---------------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 0 0111233577888999999999999999999999988654
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=192.34 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=138.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH------------------hhhhhcCCCCCchhccccCC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------KLVLEYMPHGSLEKCLYSSN- 467 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------~Lv~ey~~~gsL~~~l~~~~- 467 (639)
.++|.||++... +..+|+|.+... .....|..|+..++ .+|+||+++|+|.+++....
T Consensus 19 G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~ 95 (307)
T 2eva_A 19 GAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEP 95 (307)
T ss_dssp CSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCBHHHHHHCSSS
T ss_pred CCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCCHHHHHhccCC
Confidence 468999999875 678999998643 23356667776643 26899999999999987633
Q ss_pred -ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-eeeccccccccccccCCC--c------c---
Q 041082 468 -YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-AHLSDFGMAKLLLKEDQS--F------T--- 534 (639)
Q Consensus 468 -~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-~~i~dfgla~~~~~~~~~--~------~--- 534 (639)
..+++..+.+++.++++||+|||+....+|+||||||+||+++.++. +||+|||+++........ . +
T Consensus 96 ~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~ 175 (307)
T 2eva_A 96 LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVF 175 (307)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhh
Confidence 24789999999999999999999644478999999999999998876 799999999765432111 0 0
Q ss_pred -ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHH
Q 041082 535 -QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604 (639)
Q Consensus 535 -~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~ 604 (639)
....+.++||| | ||+.|..........+ .|... .... +.. ...+...+.+++
T Consensus 176 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~--~~~~-----~~~----------~~~~~~~l~~li 237 (307)
T 2eva_A 176 EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-MWAVH--NGTR-----PPL----------IKNLPKPIESLM 237 (307)
T ss_dssp TCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH-HHHHH--TTCC-----CCC----------BTTCCHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH-HHHHh--cCCC-----CCc----------ccccCHHHHHHH
Confidence 01123478888 6 8888876422111111 11111 0000 000 011223467788
Q ss_pred hhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 605 MECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 605 ~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+|++.+|++||||.||+++|+.+.+.
T Consensus 238 ~~~l~~dp~~Rps~~ell~~L~~~~~~ 264 (307)
T 2eva_A 238 TRCWSKDPSQRPSMEEIVKIMTHLMRY 264 (307)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHGGG
T ss_pred HHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 999999999999999999999988643
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=193.72 Aligned_cols=202 Identities=22% Similarity=0.318 Sum_probs=139.9
Q ss_pred CCcCcceEEEec-CCce----eeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK----VAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+.. +++|.+.... ......+..++..++ .+|+||+++|+|.+
T Consensus 24 G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~ 103 (325)
T 3kex_A 24 GVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLD 103 (325)
T ss_dssp CSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEEEECCTTCBSHH
T ss_pred cCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEEEEeCCCCCHHH
Confidence 568999999864 4444 6777764332 222334445555432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 104 ~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~ 180 (325)
T 3kex_A 104 HVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTP 180 (325)
T ss_dssp HHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CC
T ss_pred HHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCc
Confidence 98765557899999999999999999999 5679999999999999999999999999998775432210 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|....- ...+.+.+..... ...+.
T Consensus 181 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~~~~~~~-----~~~~~------------- 240 (325)
T 3kex_A 181 IKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR--LAEVPDLLEKGER-----LAQPQ------------- 240 (325)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--TTHHHHHHHTTCB-----CCCCT-------------
T ss_pred ccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC--HHHHHHHHHcCCC-----CCCCC-------------
Confidence 1123378888 6 7 888876421 1222222221110 00010
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||++.||+++|+++...
T Consensus 241 ~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 241 ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 1112356688899999999999999999999987543
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-21 Score=215.79 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=147.6
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||++... .+..||||++..... .....|..|+.+++. +||||+++|+|.+++
T Consensus 347 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L~~~l 426 (613)
T 2ozo_A 347 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFL 426 (613)
T ss_dssp CSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHH
T ss_pred CCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcHHHHH
Confidence 468999999874 456799999875432 234677788877542 789999999999999
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......+++..+..|+.+||+||+||| ..+|+||||||+|||++.++.+||+|||+|+.+....... ..
T Consensus 427 ~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~ 503 (613)
T 2ozo_A 427 VGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 503 (613)
T ss_dssp TTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CC
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCcc
Confidence 766667999999999999999999999 5689999999999999999999999999998765332110 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | | |+.|.... ....+.+.+..... ...+..
T Consensus 504 ~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~~~~~------------------~~~p~~ 563 (613)
T 2ozo_A 504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGKR------------------MECPPE 563 (613)
T ss_dssp TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CSHHHHHHHHTTCC------------------CCCCTT
T ss_pred ceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCc
Confidence 1122378888 6 6 77776532 12222222221100 011123
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+...+.+++..||+.+|++||+|.+|+++|+.+....
T Consensus 564 ~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~ 600 (613)
T 2ozo_A 564 CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 600 (613)
T ss_dssp CCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999876554
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=189.76 Aligned_cols=204 Identities=25% Similarity=0.428 Sum_probs=141.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh-------hhhHHHHHHHHH------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA-------FKSFDVACDMMK------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~-------~~~f~~e~~~~~------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. .++..+|+|.+....... ...+..|+..++ .+|+||+++|+|.
T Consensus 30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~lv~e~~~~~~L~ 109 (287)
T 4f0f_A 30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLY 109 (287)
T ss_dssp CSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEEEEECCTTCBHH
T ss_pred CCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeEEEEecCCCCHH
Confidence 46899999987 468899999986443221 245667776643 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCC---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~--- 532 (639)
+.+......+++..+..++.+++.||+|||.. .++|+||||||+||+++.++. +||+|||+++........
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g 188 (287)
T 4f0f_A 110 HRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLG 188 (287)
T ss_dssp HHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCC
T ss_pred HHHhcccCCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCC
Confidence 98876666799999999999999999999932 233999999999999988776 999999999855432111
Q ss_pred -----cccc------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 -----FTQN------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 -----~~~~------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+.. ..+.++||| | ||+.|..............+.. ... .+.+
T Consensus 189 ~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~---~~~----~~~~---------- 251 (287)
T 4f0f_A 189 NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE---EGL----RPTI---------- 251 (287)
T ss_dssp CCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHH---SCC----CCCC----------
T ss_pred CccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhc---cCC----CCCC----------
Confidence 1111 112367888 6 7887775422221111111111 100 0000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+..+...+.+++..|++.+|++||++.||+++|+++
T Consensus 252 ~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 252 PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 112234577888999999999999999999999753
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-21 Score=198.16 Aligned_cols=210 Identities=24% Similarity=0.329 Sum_probs=145.5
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. ..+..+|+|++..........+..|++.++ .+|+||+++|+|
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L 113 (327)
T 3lxl_A 34 GNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCL 113 (327)
T ss_dssp ETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBH
T ss_pred CCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCH
Confidence 46889999984 467899999997665555566777777743 278999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~- 535 (639)
.+++......+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 114 ~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 190 (327)
T 3lxl_A 114 RDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPG 190 (327)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCC
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccC
Confidence 9998764456899999999999999999999 668999999999999999999999999999876533211 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC-C---c---ceeeecccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI-S---V---MEVVDVNLLSM 585 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~-~---~---~~~~d~~l~~~ 585 (639)
...+.+.||| | ||+.|..... .++....... . . .+.+.....
T Consensus 191 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (327)
T 3lxl_A 191 QSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS------AEFLRMMGCERDVPALSRLLELLEEGQR-- 262 (327)
T ss_dssp CSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHCC----CCHHHHHHHHHHTTCC--
T ss_pred CccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc------chhhhhcccccccccHHHHHHHhhcccC--
Confidence 0112378888 6 7877754211 0111100000 0 0 000100000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+..+...+.+++..|++.+|++|||+.|++++|+.+...
T Consensus 263 ----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 263 ----LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred ----CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 011123345677889999999999999999999999988643
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=186.91 Aligned_cols=206 Identities=19% Similarity=0.332 Sum_probs=143.7
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|.+.... ......+..|+..++. +|+||+++|+|.++
T Consensus 23 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~ 102 (281)
T 3cc6_A 23 GFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGELGHY 102 (281)
T ss_dssp CSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEEEECCTTCBHHHH
T ss_pred cCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEEEecCCCCCHHHH
Confidence 4689999998643 2469999986542 2234556666666432 68999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~-- 534 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........ .+
T Consensus 103 l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 179 (281)
T 3cc6_A 103 LERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIK 179 (281)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGG
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcc
Confidence 8765556899999999999999999999 668999999999999999999999999999876543211 00
Q ss_pred ----c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ----Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ----~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++||| | | |+.|.... ....+.+.+....... . +..+
T Consensus 180 y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~--~~~~~~~~~~~~~~~~-----~-------------~~~~ 239 (281)
T 3cc6_A 180 WMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--ENKDVIGVLEKGDRLP-----K-------------PDLC 239 (281)
T ss_dssp GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CGGGHHHHHHHTCCCC-----C-------------CTTC
T ss_pred eeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC--ChHHHHHHHhcCCCCC-----C-------------CCCC
Confidence 0 1112368888 6 6 88776532 1222222222111000 0 0112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
...+.+++.+|++.+|++||++.|+++.|+.+.+.....
T Consensus 240 ~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~i 278 (281)
T 3cc6_A 240 PPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDI 278 (281)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhhhh
Confidence 234677889999999999999999999999997765443
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=190.05 Aligned_cols=194 Identities=24% Similarity=0.322 Sum_probs=136.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..+..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 31 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 110 (297)
T 3fxz_A 31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 110 (297)
T ss_dssp ETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhh
Confidence 46899999974 568899999997665555556666776643 278999999999998865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
. .+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 111 ~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP 185 (297)
T 3fxz_A 111 T--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185 (297)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred c--CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccCh
Confidence 3 5889999999999999999999 568999999999999999999999999999876543321110
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|...... ...+........+. . ..+......+.
T Consensus 186 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~ 247 (297)
T 3fxz_A 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-LRALYLIATNGTPE----L-------------QNPEKLSAIFR 247 (297)
T ss_dssp HHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHHCSCC----C-------------SCGGGSCHHHH
T ss_pred hhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhCCCCC----C-------------CCccccCHHHH
Confidence 0112367888 6 77777643100 00000011100000 0 00112223467
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++|||+.|+++
T Consensus 248 ~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 248 DFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHccCChhHCcCHHHHhh
Confidence 7888999999999999999985
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-21 Score=195.87 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=142.9
Q ss_pred CCcCcceEEEecC------CceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++...+ +..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 58 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 137 (343)
T 1luf_A 58 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137 (343)
T ss_dssp CSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred cCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcH
Confidence 4689999998753 4789999987543 223456777777754 268999999999
Q ss_pred hhccccC-----------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSS-----------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+++... ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~k 214 (343)
T 1luf_A 138 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVK 214 (343)
T ss_dssp HHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEE
T ss_pred HHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEECCCCeEE
Confidence 9988642 146899999999999999999999 56899999999999999999999
Q ss_pred eccccccccccccCCC--c-----c------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQS--F-----T------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~--~-----~------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++........ . + . ...+.++||| | | |+.|.... .-.+.....
T Consensus 215 l~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-----~~~~~~~~~ 289 (343)
T 1luf_A 215 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM-----AHEEVIYYV 289 (343)
T ss_dssp ECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHH
T ss_pred EeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC-----ChHHHHHHH
Confidence 9999999865432211 0 0 0 1122378888 6 6 77776531 111111111
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
....... .+..+...+.+++.+|++.+|++||++.+|++.|+++.+.+...
T Consensus 290 ~~~~~~~---------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~~ 340 (343)
T 1luf_A 290 RDGNILA---------------CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEGT 340 (343)
T ss_dssp HTTCCCC---------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-----
T ss_pred hCCCcCC---------------CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhhh
Confidence 1111000 01122335778899999999999999999999999987766443
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=196.79 Aligned_cols=117 Identities=29% Similarity=0.421 Sum_probs=95.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.+||.||++.. ..|..||||++..... ...+.+..|+.+++ ++|||||+ |
T Consensus 65 G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g 143 (398)
T 4b99_A 65 GAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-S 143 (398)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-E
T ss_pred ccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-C
Confidence 56999999985 5689999999864432 22345666777643 37899996 7
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+|.+++.. ...+++.....|+.+++.||+||| +.+|+||||||.|||++.++.+||+|||+|+.+..
T Consensus 144 ~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~ 210 (398)
T 4b99_A 144 DLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT 210 (398)
T ss_dssp EHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC--
T ss_pred CHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeeccc
Confidence 89888875 346899999999999999999999 67899999999999999999999999999987643
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=187.78 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=144.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~~ 466 (639)
.++|.||++...++..+|+|.+...... ...+..|+..++ .+|+||+++|+|.+++...
T Consensus 19 G~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~ 97 (267)
T 3t9t_A 19 GQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQ 97 (267)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECTTTBC-HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHT
T ss_pred CCceeEEEEEecCCCeEEEEEccccCCC-HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhC
Confidence 4688999999888889999998755332 345666776643 2689999999999998765
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------c------c
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------F------T 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~------~ 534 (639)
...+++..+..++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........ . +
T Consensus 98 ~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aP 174 (267)
T 3t9t_A 98 RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 174 (267)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccCh
Confidence 556899999999999999999999 567999999999999999999999999999865432100 0 0
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|.... ...+.+....... ....+. .....+
T Consensus 175 E~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~i~~~~--~~~~~~-------------~~~~~l 234 (267)
T 3t9t_A 175 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTGF--RLYKPR-------------LASTHV 234 (267)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTTC--CCCCCT-------------TSCHHH
T ss_pred hhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC-----CHHHHHHHHhcCC--cCCCCc-------------cCcHHH
Confidence 0 1123378888 6 6 77776531 1112211111110 001111 112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+++.+|++.+|++||++.|++++|+++.+
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 235 YQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 778899999999999999999999998865
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=187.91 Aligned_cols=203 Identities=20% Similarity=0.297 Sum_probs=135.5
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|...... ......+..|+..++ .+|+||+++|+|.++
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~ 105 (281)
T 1mp8_A 26 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 105 (281)
T ss_dssp CSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHH
T ss_pred cCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEEEecCCCCCHHHH
Confidence 4689999998643 4569999876432 223345666666643 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ------ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~------ 535 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 106 l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 182 (281)
T 1mp8_A 106 LQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 182 (281)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGG
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCccc
Confidence 8765556899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred ---------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ---------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | | |+.|..... ...+...+...... .+ +..+
T Consensus 183 y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~i~~~~~~----~~--------------~~~~ 242 (281)
T 1mp8_A 183 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIENGERL----PM--------------PPNC 242 (281)
T ss_dssp GCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCCC----CC--------------CTTC
T ss_pred ccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHHHHcCCCC----CC--------------CCCC
Confidence 0112367888 6 4 777765321 12222222211100 00 1122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+.+++.+|++.+|++||++.|+++.|+.+.+..
T Consensus 243 ~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 243 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 335677889999999999999999999999886553
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=192.86 Aligned_cols=207 Identities=20% Similarity=0.264 Sum_probs=139.4
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhh-hhhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQY-ERAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++. +|+||+++|+
T Consensus 56 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~ 135 (344)
T 1rjb_A 56 GAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGD 135 (344)
T ss_dssp CSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred CCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCc
Confidence 46889999986 235689999986432 2233456666665432 6899999999
Q ss_pred chhccccCC----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 459 LEKCLYSSN----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 459 L~~~l~~~~----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
|.+++.... ..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 136 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~k 212 (344)
T 1rjb_A 136 LLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVK 212 (344)
T ss_dssp HHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTTEEE
T ss_pred HHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEEcCCCcEE
Confidence 999886532 23799999999999999999999 56899999999999999999999
Q ss_pred eccccccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++......... .. ...+.++||| | | |+.|..... ....+...+...
T Consensus 213 L~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-~~~~~~~~~~~~ 291 (344)
T 1rjb_A 213 ICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP-VDANFYKLIQNG 291 (344)
T ss_dssp ECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-CSHHHHHHHHTT
T ss_pred eCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC-cHHHHHHHHhcC
Confidence 99999998765432210 00 0122368888 6 6 777765421 111222222211
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
.... .+..+...+.+++.+|++.+|++||++.||++.|+.+.....+.
T Consensus 292 ~~~~------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 292 FKMD------------------QPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred CCCC------------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 1100 00112235677889999999999999999999999987665443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=198.50 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=139.9
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
+|++|+|++|.+++ +|..+. ++|+.|+|++|+++ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 776664 67888888888887 466 446788888888888876 555 443 55555555
Q ss_pred CCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhh
Q 041082 157 HNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236 (639)
Q Consensus 157 ~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 236 (639)
+|. +++ +|. .+++|+.|++++|.+++ +|. .+++|++|+|++|.+++.+
T Consensus 129 ~N~------------------l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp------ 176 (571)
T 3cvr_A 129 NNQ------------------LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLP------ 176 (571)
T ss_dssp SSC------------------CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC------
T ss_pred CCc------------------CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcc------
Confidence 554 444 444 46899999999999987 454 5788999999998887632
Q ss_pred ccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCC-------cEEEccCCc
Q 041082 237 YSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKL-------QLLSFVDNK 309 (639)
Q Consensus 237 ~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~l~~N~ 309 (639)
. +. ++|+.|+|++|.|+ .+|. +.. +| +.|++++|+
T Consensus 177 -------------------------------~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 177 -------------------------------E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -------------------------------C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred -------------------------------h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 1 22 56777888888877 4555 443 66 999999999
Q ss_pred CCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 310 LEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 310 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
|+. +|..+..+++|+.|+|++|.+++.+|..+..+..
T Consensus 219 l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 994 6777778999999999999999998887766543
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-20 Score=186.72 Aligned_cols=205 Identities=21% Similarity=0.332 Sum_probs=148.1
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|.+++
T Consensus 21 G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l 100 (287)
T 1u59_A 21 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFL 100 (287)
T ss_dssp CTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHH
T ss_pred cCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCCHHHHH
Confidence 468899999754 567899999876432 234556677766442 689999999999998
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~ 177 (287)
T 1u59_A 101 VGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 177 (287)
T ss_dssp TTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCG
T ss_pred HhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccc
Confidence 765567999999999999999999999 5689999999999999999999999999998764332110 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | | |+.|.... ....+...+...... .+ +..
T Consensus 178 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~i~~~~~~----~~--------------~~~ 237 (287)
T 1u59_A 178 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIEQGKRM----EC--------------PPE 237 (287)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CTHHHHHHHHTTCCC----CC--------------CTT
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHHhcCCcC----CC--------------CCC
Confidence 0112378888 6 6 88887532 122222222211100 00 112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLK 634 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~ 634 (639)
+...+.+++..|++.+|++||++.||+++|+.+..+...
T Consensus 238 ~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 238 CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 233577888999999999999999999999998776543
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=187.71 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=139.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+.... ....+..|+..++ .+|+||+ +|+|.+++.
T Consensus 21 G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~ 97 (298)
T 1csn_A 21 GSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLD 97 (298)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred cCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHH
Confidence 46889999985 578999999885432 2234555554432 2689999 999999997
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCCc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~~------ 533 (639)
.....+++..+.+|+.++++||+||| ..+|+||||||+||+++.++. +||+|||+++.........
T Consensus 98 ~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 174 (298)
T 1csn_A 98 LCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE 174 (298)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccC
Confidence 65556999999999999999999999 678999999999999987776 9999999998765432110
Q ss_pred -cc---------------cccccccccc--c-------CCCCCCCccCCCc-cchHHHHH-hhCCCCcceeeeccccccc
Q 041082 534 -TQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGE-MTLKSWVN-DLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 -~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~-~~l~~~~~-~~~~~~~~~~~d~~l~~~~ 586 (639)
.. ...+.++||| | ||+.|........ ......+. ...+... +
T Consensus 175 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----~------ 243 (298)
T 1csn_A 175 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL-----R------ 243 (298)
T ss_dssp CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH-----H------
T ss_pred ccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH-----H------
Confidence 00 0112356777 5 6776665321110 00000000 0000000 0
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+....+...+.+++..|++.+|++||++.+|++.|+++....
T Consensus 244 ----~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~ 285 (298)
T 1csn_A 244 ----ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL 285 (298)
T ss_dssp ----HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred ----HHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence 000122346778999999999999999999999999886543
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=186.92 Aligned_cols=202 Identities=23% Similarity=0.359 Sum_probs=144.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~~ 467 (639)
.++|.||++...++..+|+|.+..... ....+..|+..++. +|+||+++|+|.+++....
T Consensus 24 G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~ 102 (279)
T 1qpc_A 24 GQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPS 102 (279)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHH
T ss_pred CCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCCCHHHHHhcCC
Confidence 468999999988888999999865432 23566677766442 6899999999999987522
Q ss_pred -ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc----------
Q 041082 468 -YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ---------- 535 (639)
Q Consensus 468 -~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~---------- 535 (639)
..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 103 ~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP 179 (279)
T 1qpc_A 103 GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179 (279)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccCh
Confidence 35899999999999999999999 6689999999999999999999999999998765432110 00
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | | |+.|.... ....+...+..... ... +..+...+
T Consensus 180 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~~~-----~~~-------------~~~~~~~l 239 (279)
T 1qpc_A 180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM--TNPEVIQNLERGYR-----MVR-------------PDNCPEEL 239 (279)
T ss_dssp HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTCC-----CCC-------------CTTCCHHH
T ss_pred hhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc--CHHHHHHHHhcccC-----CCC-------------cccccHHH
Confidence 0112367888 6 6 77776431 11111111111100 000 01122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+++..|++.+|++||++.++++.|+++....
T Consensus 240 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 240 YQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999887654
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-21 Score=208.59 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=144.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.+||.||++...++..||||++..... ....|..|+.+++. +|+||+++|+|.+++...
T Consensus 278 G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~ 356 (535)
T 2h8h_A 278 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGET 356 (535)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTEEHHHHHSHHH
T ss_pred CCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCCcHHHHHhhcC
Confidence 468999999998888899999875432 23567778777553 689999999999999752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT------ 534 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~------ 534 (639)
...+++..+.+|+.+|++||+||| ..+|+|||||++|||++.++.+||+|||+++........ .+
T Consensus 357 ~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aP 433 (535)
T 2h8h_A 357 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 433 (535)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCH
Confidence 245899999999999999999999 568999999999999999999999999999876432110 00
Q ss_pred c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 ~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | | |+.|..... ...+.+.+.... . ...+..+...+
T Consensus 434 E~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~--~~~~~~~i~~~~---~---------------~~~~~~~~~~l 493 (535)
T 2h8h_A 434 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--NREVLDQVERGY---R---------------MPCPPECPESL 493 (535)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC--HHHHHHHHHTTC---C---------------CCCCTTCCHHH
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC---C---------------CCCCCCCCHHH
Confidence 0 1123378888 6 6 777765321 111111111110 0 00112234457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+++.+|++.+|++||+|.+|++.|+.+.
T Consensus 494 ~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 494 HDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 78999999999999999999999998764
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=196.44 Aligned_cols=202 Identities=23% Similarity=0.337 Sum_probs=139.2
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|||++.... ......+..|+..++ .+|+||+++|+|
T Consensus 82 G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L 161 (367)
T 3l9p_A 82 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDL 161 (367)
T ss_dssp CSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEH
T ss_pred CCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCH
Confidence 568999999854 35689999985432 223345666666543 278999999999
Q ss_pred hhccccC------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeeccccccccccccC
Q 041082 460 EKCLYSS------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++ .+||+|||+|+......
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~ 238 (367)
T 3l9p_A 162 KSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG 238 (367)
T ss_dssp HHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHS
T ss_pred HHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECCCcccccccccc
Confidence 9988652 135899999999999999999999 56899999999999999554 59999999998653322
Q ss_pred CC--cc---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QS--FT---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~--~~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.. .. ....+.++||| | | |+.|.... ....+.+.+..... .
T Consensus 239 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~--~~~~~~~~i~~~~~---~-------- 305 (367)
T 3l9p_A 239 YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFVTSGGR---M-------- 305 (367)
T ss_dssp SCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCC---C--------
T ss_pred ccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC---C--------
Confidence 11 00 00122367888 6 5 77776531 11122222211110 0
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+..+...+.+++.+|++.+|++||++.||+++|+.+.+.
T Consensus 306 -------~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 306 -------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp -------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 00112233577889999999999999999999999988654
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=186.24 Aligned_cols=205 Identities=18% Similarity=0.199 Sum_probs=138.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... ...+..|...++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (296)
T 4hgt_A 20 GSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFN 96 (296)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHH
Confidence 46899999985 5688999998654332 234555555432 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCc-------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSF-------T 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~-------~ 534 (639)
.....+++..+..++.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+++......... .
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~ 173 (296)
T 4hgt_A 97 FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 173 (296)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCccc
Confidence 55556999999999999999999999 5679999999999999 788999999999998765432210 0
Q ss_pred cc---------------ccccccccc--c-------CCCCCCCccCCC-c-cchHHHHHhhCCCCcceeeeccccccccc
Q 041082 535 QN---------------TNTCHHRIY--G-------TRRNPQMNFFSG-E-MTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 535 ~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~-~-~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
.. ..+.++||| | ||+.|....... . ..+........+... +
T Consensus 174 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 240 (296)
T 4hgt_A 174 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-E------------ 240 (296)
T ss_dssp CCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-H------------
T ss_pred ccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchh-h------------
Confidence 00 112256777 5 666665432111 0 011111000000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.........+.+++..|++.+|++||++.+|++.|+++....
T Consensus 241 --~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~ 282 (296)
T 4hgt_A 241 --VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp --HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred --hhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 000111346778899999999999999999999999887654
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=188.04 Aligned_cols=212 Identities=20% Similarity=0.349 Sum_probs=141.0
Q ss_pred CCcCcceEEEe-----cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-----QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-----~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||++.+ ..+..+|+|.+..... .....+..|+..++ .+|+||+++|+
T Consensus 32 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~ 111 (302)
T 4e5w_A 32 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGS 111 (302)
T ss_dssp CSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCB
T ss_pred CCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCc
Confidence 56899999984 4678999999875432 22355666766633 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~ 535 (639)
|.+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 112 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~ 188 (302)
T 4e5w_A 112 LKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDD 188 (302)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCC
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCC
Confidence 99998665556899999999999999999999 668999999999999999999999999999876543211 000
Q ss_pred ---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc---ceeeeccccccccc
Q 041082 536 ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV---MEVVDVNLLSMEDK 588 (639)
Q Consensus 536 ---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~ 588 (639)
...+.++||| | ||+.|.... ...+.....+... .+.+...+... .
T Consensus 189 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 260 (302)
T 4e5w_A 189 RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP------MALFLKMIGPTHGQMTVTRLVNTLKEG--K 260 (302)
T ss_dssp TTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH------HHHHHHHHCSCCGGGHHHHHHHHHHTT--C
T ss_pred CCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch------hhHHhhccCCcccccCHHHHHHHHhcc--C
Confidence 0112267888 6 777664321 1111111111100 00000000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
....+..+...+.+++.+|++.+|++|||+.|++++|+++.
T Consensus 261 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 261 RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 00111223345778999999999999999999999998763
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-20 Score=186.53 Aligned_cols=204 Identities=18% Similarity=0.199 Sum_probs=139.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|++..... ...+..|...++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (296)
T 3uzp_A 20 GSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFN 96 (296)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHH
Confidence 46889999985 6789999998765432 234555555532 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCc-------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSF-------T 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~-------~ 534 (639)
.....+++..+..++.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+++......... .
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~ 173 (296)
T 3uzp_A 97 FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 173 (296)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSC
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccccccc
Confidence 55557999999999999999999999 5689999999999999 588999999999998765432210 0
Q ss_pred c---------------cccccccccc--c-------CCCCCCCccCC-Cccc-hHHHHHhhCCCCcceeeeccccccccc
Q 041082 535 Q---------------NTNTCHHRIY--G-------TRRNPQMNFFS-GEMT-LKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 535 ~---------------~~~~~~~dvy--G-------tg~~p~~~~~~-~~~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
. ...+.++||| | ||+.|...... .... +............ +
T Consensus 174 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~------------ 240 (296)
T 3uzp_A 174 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-E------------ 240 (296)
T ss_dssp CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-H------------
T ss_pred ccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch-H------------
Confidence 0 0112256777 5 77777653211 1111 1111111000000 0
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.....+...+.+++.+|++.+|++||++.+|++.|+++...
T Consensus 241 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 281 (296)
T 3uzp_A 241 --VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp --HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred --HHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence 00011234577889999999999999999999999988654
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-21 Score=200.89 Aligned_cols=203 Identities=21% Similarity=0.371 Sum_probs=135.3
Q ss_pred CCcCcceEEEecC--C--ceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD--G--MKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g--~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.... + ..+|+|.+.... ......|..|+..++ .+|+||+++|+|.
T Consensus 100 G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~ 179 (373)
T 3c1x_A 100 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR 179 (373)
T ss_dssp CSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHH
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHH
Confidence 4689999998643 2 468999875432 223455666665532 3689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----cc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~- 535 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 180 ~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~ 256 (373)
T 3c1x_A 180 NFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 256 (373)
T ss_dssp HHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC--------------------
T ss_pred HHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCC
Confidence 999876667899999999999999999999 5689999999999999999999999999998664322110 00
Q ss_pred --------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | | |..|.... ....+...+.... ....
T Consensus 257 ~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~--~~~~~~~~~~~~~-----~~~~------------ 317 (373)
T 3c1x_A 257 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGR-----RLLQ------------ 317 (373)
T ss_dssp -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CSSCHHHHHHTTC-----CCCC------------
T ss_pred CCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC--CHHHHHHHHHcCC-----CCCC------------
Confidence 0112367888 6 6 44454332 1122222222110 0011
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++||++.|+++.|+++...+
T Consensus 318 -p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~ 357 (373)
T 3c1x_A 318 -PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 357 (373)
T ss_dssp -CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred -CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 1122345778899999999999999999999999887654
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=187.50 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=141.9
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++.. .++..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 113 (314)
T 2ivs_A 34 GEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSL 113 (314)
T ss_dssp CSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred cCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCH
Confidence 46899999975 235789999986433 223355666776643 268999999999
Q ss_pred hhccccCC-----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSSN-----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~~-----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+++.... ..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|
T Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp~NIli~~~~~~k 190 (314)
T 2ivs_A 114 RGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMK 190 (314)
T ss_dssp HHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTEEE
T ss_pred HHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccchheEEEcCCCCEE
Confidence 99886422 24889999999999999999999 56799999999999999999999
Q ss_pred eccccccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+++........ ... ...+.++||| | | |+.|..... ...+...+...
T Consensus 191 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~~ 268 (314)
T 2ivs_A 191 ISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP--PERLFNLLKTG 268 (314)
T ss_dssp ECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHHTT
T ss_pred EccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHhhcC
Confidence 9999999876433211 000 0112378888 6 6 777765321 12222222211
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.... .+..+...+.+++.+|++.+|++||++.||+++|+++..
T Consensus 269 ~~~~------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 269 HRME------------------RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp CCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CcCC------------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1000 011123357788899999999999999999999998743
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-20 Score=190.69 Aligned_cols=210 Identities=21% Similarity=0.331 Sum_probs=144.3
Q ss_pred CCcCcceEEEec-----CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-----DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-----~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gs 458 (639)
.++|.||++.+. .+..+|+|++..... .....+..|+..++ .+|+||+++|+
T Consensus 42 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~ 121 (318)
T 3lxp_A 42 GHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGS 121 (318)
T ss_dssp CSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCB
T ss_pred CCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCc
Confidence 568899887653 578899999875432 23445667776643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~ 535 (639)
|.+++... .+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 122 L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 196 (318)
T 3lxp_A 122 LRDYLPRH--SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRED 196 (318)
T ss_dssp HHHHGGGS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccC
Confidence 99998653 4899999999999999999999 567999999999999999999999999999876543211 000
Q ss_pred ---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC------cceeeecccccc
Q 041082 536 ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------VMEVVDVNLLSM 585 (639)
Q Consensus 536 ---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------~~~~~d~~l~~~ 585 (639)
...+.++||| | ||+.|....... ...+. ..... ..+.++....
T Consensus 197 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 269 (318)
T 3lxp_A 197 GDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTK---FLELI--GIAQGQMTVLRLTELLERGER-- 269 (318)
T ss_dssp CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH---HHHHH--CSCCHHHHHHHHHHHHHTTCC--
T ss_pred CCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchh---hhhhh--cccccchhHHHHHHHHhcccC--
Confidence 0112367888 6 888776432100 00000 00000 0011111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
...+..+...+.+++.+|++.+|++||++.|+++.|+.+.+.+
T Consensus 270 ----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 312 (318)
T 3lxp_A 270 ----LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY 312 (318)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence 0111223446778899999999999999999999999998776
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-20 Score=188.02 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=141.3
Q ss_pred CCcCcceEEEec--------CCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCC
Q 041082 407 SGFGSIYKARIQ--------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~--------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++. +|+||+++
T Consensus 46 G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 125 (334)
T 2pvf_A 46 GAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125 (334)
T ss_dssp CSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTT
T ss_pred cCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCC
Confidence 468999999863 467899999865432 233456666665432 68999999
Q ss_pred CCchhccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++.... ..++|..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||
T Consensus 126 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 202 (334)
T 2pvf_A 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFG 202 (334)
T ss_dssp CBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred CcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEEcCCCCEEEcccc
Confidence 99999886532 24899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCC--ccc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQS--FTQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~--~~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++........ ... ...+.++||| | | |+.|.... ....+...+.......
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~~- 279 (334)
T 2pvf_A 203 LARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGHRMD- 279 (334)
T ss_dssp TCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHHTCCCC-
T ss_pred ccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC--CHHHHHHHHhcCCCCC-
Confidence 99876543211 000 0122378888 6 6 77776531 1111112221111000
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+..+...+.+++..|++.+|++||++.||++.|+++....
T Consensus 280 -----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 280 -----------------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp -----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -----------------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 01122335778889999999999999999999999987653
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=183.34 Aligned_cols=200 Identities=23% Similarity=0.345 Sum_probs=130.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh----hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER----AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|+|++...... ....+..|+..++ .+|+||+++|+|.++
T Consensus 18 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 96 (271)
T 3dtc_A 18 GGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRV 96 (271)
T ss_dssp ETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHH
T ss_pred CCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHH
Confidence 468899999875 788999998654322 2345666666643 278999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--------CcceeeccccccccccccCCCc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--------NMVAHLSDFGMAKLLLKEDQSF- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--------~~~~~i~dfgla~~~~~~~~~~- 533 (639)
+.. ..+++..+..++.++++||+|||.....+|+||||||+||+++. ++.+|++|||+++.........
T Consensus 97 ~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~ 174 (271)
T 3dtc_A 97 LSG--KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSA 174 (271)
T ss_dssp HTS--SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC------------
T ss_pred hhc--CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCC
Confidence 853 46899999999999999999999654456999999999999986 6779999999998654332110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... ..... ............+
T Consensus 175 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~---~~~~~~~~~~~~~-------------- 235 (271)
T 3dtc_A 175 AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI--DGLAV---AYGVAMNKLALPI-------------- 235 (271)
T ss_dssp -CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS--CHHHH---HHHHHTSCCCCCC--------------
T ss_pred CCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHH---HHhhhcCCCCCCC--------------
Confidence 0 01123368888 6 788776531 11111 1111111100000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+..+...+.+++.+|++.+|++||++.||+++|+++
T Consensus 236 ~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 236 PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 112233577888999999999999999999999754
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-20 Score=190.28 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=141.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH------------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK------------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.. ..+..+|+|++..........+..|+..++ .+|+||+++|+|.+
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~ 119 (317)
T 2buj_A 40 GGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWN 119 (317)
T ss_dssp --CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHH
Confidence 46889999986 568999999886554444556667776633 26889999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC--------
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED-------- 530 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~-------- 530 (639)
++.. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......
T Consensus 120 ~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 196 (317)
T 2buj_A 120 EIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALT 196 (317)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhccccccccccccc
Confidence 8865 3456899999999999999999999 5689999999999999999999999999887543210
Q ss_pred ------------CCcccc-------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 531 ------------QSFTQN-------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 531 ------------~~~~~~-------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
+..+.. ..+.++||| | ||+.|.......+..+...+...... +
T Consensus 197 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-------~-- 267 (317)
T 2buj_A 197 LQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSI-------P-- 267 (317)
T ss_dssp HHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--C-------C--
T ss_pred ccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCC-------C--
Confidence 000110 113367888 6 77777643222222222221110000 0
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
........+.+++.+|++.+|++||++.||++.|+.++.
T Consensus 268 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 268 ---------QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp ---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred ---------ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 001122357788899999999999999999999998753
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=189.64 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=133.3
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcC
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~ 454 (639)
.++|.||++..... ..+|+|.+.... ......+..|+..++ .+|+||+
T Consensus 34 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~ 113 (323)
T 3qup_A 34 GEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFM 113 (323)
T ss_dssp ETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECC
T ss_pred cCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEec
Confidence 46899999987543 279999986542 233456666766632 4688999
Q ss_pred CCCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 455 PHGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 455 ~~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
++|+|.+++.. ....+++..+.+|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 114 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~ 190 (323)
T 3qup_A 114 KHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSG 190 (323)
T ss_dssp TTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred cCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEEeecccccccccc
Confidence 99999998854 1225899999999999999999999 568999999999999999999999999999876443
Q ss_pred CCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 530 DQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 530 ~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
.... .. ...+.++||| | | |+.|.... ....+...+......
T Consensus 191 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~---------- 258 (323)
T 3qup_A 191 DYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI--ENAEIYNYLIGGNRL---------- 258 (323)
T ss_dssp ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCC----------
T ss_pred ccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc--ChHHHHHHHhcCCCC----------
Confidence 2110 00 0123378888 6 6 77776532 112222221110000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
..+..+...+.+++.+|++.+|++||++.++++.|+++...
T Consensus 259 --------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 259 --------KQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp --------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --------CCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00112234577899999999999999999999999988653
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=189.74 Aligned_cols=203 Identities=22% Similarity=0.371 Sum_probs=135.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... .+|+|++.... ......+..|+..++ .+|+||+++|+|.+++..
T Consensus 35 G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (289)
T 3og7_A 35 GSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHA 112 (289)
T ss_dssp CSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHTT
T ss_pred CCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecCCCcHHHHHhh
Confidence 4689999998653 58999886543 223456777777744 268999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------- 532 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------- 532 (639)
....+++..+.+++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 113 ~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~ 189 (289)
T 3og7_A 113 SETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWM 189 (289)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCcccc
Confidence 6667999999999999999999999 567999999999999999999999999999765421110
Q ss_pred cc-------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 533 FT-------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 533 ~~-------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
.+ ....+.++||| | ||+.|..... ....+.+.+..... .+.+.. ....+
T Consensus 190 aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~-------~~~~~~-------~~~~~ 254 (289)
T 3og7_A 190 APEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRGSL-------SPDLSK-------VRSNC 254 (289)
T ss_dssp CHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHHHTSC-------CCCTTS-------SCTTS
T ss_pred CchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhccccc-------Ccchhh-------ccccC
Confidence 00 00112367888 6 7777765321 11112222211110 000000 01123
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
...+.+++.+|++.+|++||++.|++++|+++.
T Consensus 255 ~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 255 PKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 346778899999999999999999999999874
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=190.26 Aligned_cols=112 Identities=26% Similarity=0.308 Sum_probs=90.9
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++.-. .+..||+|.+..... ...+..|++.++ .+||||+++|+|.+
T Consensus 32 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~ 109 (361)
T 4f9c_A 32 GTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLD 109 (361)
T ss_dssp CSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHH
T ss_pred ccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHH
Confidence 468999999742 467899998864432 234555665533 26899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeecccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLL 527 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~ 527 (639)
++. .+++.....++.+++.||+||| +.+|+||||||.|||++.+ +.+||+|||+|+...
T Consensus 110 ~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~ 169 (361)
T 4f9c_A 110 ILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH 169 (361)
T ss_dssp HHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred HHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence 884 3888888999999999999999 6789999999999999976 799999999998654
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=185.99 Aligned_cols=203 Identities=24% Similarity=0.419 Sum_probs=135.7
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~ 455 (639)
.++|.||++.... +..+|+|.+.... ......+..|+..++ .+|+||++
T Consensus 45 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~ 124 (313)
T 3brb_A 45 GEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMK 124 (313)
T ss_dssp -CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCT
T ss_pred cCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEeccc
Confidence 4689999997642 4579999986543 223345666666532 46899999
Q ss_pred CCCchhcccc-----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 456 HGSLEKCLYS-----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 456 ~gsL~~~l~~-----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+|+|.+++.. ....+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......
T Consensus 125 ~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~ 201 (313)
T 3brb_A 125 YGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGD 201 (313)
T ss_dssp TCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEECSCSCC-------
T ss_pred CCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEEeecCcceeccccc
Confidence 9999988742 3356899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CCc-------c----------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF-------T----------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~-------~----------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... + ....+.++||| | | |+.|.... ....+.+.+......
T Consensus 202 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~~~~----------- 268 (313)
T 3brb_A 202 YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV--QNHEMYDYLLHGHRL----------- 268 (313)
T ss_dssp ---------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC-----------
T ss_pred ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC--CHHHHHHHHHcCCCC-----------
Confidence 110 0 00112367888 6 6 66665432 112222222111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+..+...+.+++.+|++.+|++||++.+++++|+++.+.+
T Consensus 269 -------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 269 -------KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp -------CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -------CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 001122345778889999999999999999999999887653
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=185.72 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=135.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 43 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 122 (310)
T 2wqm_A 43 GQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRM 122 (310)
T ss_dssp C--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHH
T ss_pred CCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHH
Confidence 46889999986 568999999986532 223445666666643 268999999999998
Q ss_pred ccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------
Q 041082 463 LYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 463 l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
+.. ....+++..+.+++.++++||+||| ..+++||||||+||+++.++.+||+|||+++.........
T Consensus 123 l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 199 (310)
T 2wqm_A 123 IKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT 199 (310)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC------------------C
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCC
Confidence 864 3456899999999999999999999 5689999999999999999999999999998664322110
Q ss_pred -----c----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 -----T----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 -----~----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+ ....+.++||| | ||+.|.... .....++........... .. ...
T Consensus 200 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~---~~~~~~~~~~~~~~~~~~-----~~---------~~~ 262 (310)
T 2wqm_A 200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD---KMNLYSLCKKIEQCDYPP-----LP---------SDH 262 (310)
T ss_dssp CSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC------CCHHHHHHHHHTTCSCC-----CC---------TTT
T ss_pred eeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc---chhHHHHHHHhhcccCCC-----Cc---------ccc
Confidence 0 01123378888 6 788776432 222222222111111000 00 011
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
....+.+++.+|++.+|++||++.+|++.|++++...
T Consensus 263 ~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~ 299 (310)
T 2wqm_A 263 YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT 299 (310)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence 1234677888999999999999999999999997653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-22 Score=221.72 Aligned_cols=344 Identities=15% Similarity=0.158 Sum_probs=241.8
Q ss_pred CcEEEEEeCCCCCcccCCcCCC-CCCCCCEEeccCC-cCCcc-CCccccCCcccceeeccCCcCCCCCCcccc----CCC
Q 041082 52 YRVTTLNISGLSLTSTIPSELG-NLSSLQTLDLSFN-WFSGS-IPSSIFNMSSLLSIYFNNNTLFGEIPEELG----NLA 124 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~ 124 (639)
.+++.|+|+++.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3688999999988876666665 6899999999999 45432 455556899999999999998776555444 677
Q ss_pred CCcEEeccccc--Ccc-ccCccccCCCCCCEEecCCC-CCCCC-----CCCCccEEEccCCc------------------
Q 041082 125 ELETLWLQNNF--LTG-TIHSSIFNLSSLSDLDLSHN-NLTDV-----QIPNLENLLLWGNN------------------ 177 (639)
Q Consensus 125 ~L~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~-----~l~~L~~L~L~~N~------------------ 177 (639)
+|++|+|++|. +.. .++..+..+++|++|+|++| .++++ .+++|+.|+++.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 99999999997 221 12222345799999999988 33321 25678888755441
Q ss_pred --------cC----ccCCccccCCCCCcEEEcccCCCcccC-ccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcc
Q 041082 178 --------FS----GAIPHFIFNASKLSILELQKNSFFDLI-PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKY 244 (639)
Q Consensus 178 --------l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~ 244 (639)
+. +.+|..+..+++|+.|++++|.+.+.. +..+..+++|++|++++| ++. .. +..
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~------l~~ 332 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AG------LEV 332 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HH------HHH
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HH------HHH
Confidence 11 123334446789999999999976432 223568999999999987 331 00 111
Q ss_pred hhhhccCccEEEeec---------Cccccccchhhc-CCCCCCEEECCCCCCCcccccccc-CCcCCcEEEcc--C----
Q 041082 245 LEQSSQSLEVFSMFN---------CNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLC-KLQKLQLLSFV--D---- 307 (639)
Q Consensus 245 l~~~~~~l~~l~l~~---------n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~--~---- 307 (639)
+....++|+.|++.. +.+++.....+. .+++|+.|.++.|.+++..+..+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 222345788888843 455544333443 488999999999998876555554 58899999998 4
Q ss_pred CcCCCC-----CchhhcCCCCCcEEECCCCcCcccCCccccC-CCCCCEEeCCCCcCcccchhhh-hcCCCCcEEEcccC
Q 041082 308 NKLEGP-----IPYEFCRLASLYELDLSGNKLSGSIPTCFGN-QTSLRILSLDSNKLISIIPSTL-WNLKDILYLNLSSN 380 (639)
Q Consensus 308 N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~ls~N 380 (639)
|.+++. ++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 555532 223367789999999987 666554444544 7899999999999877665555 67899999999999
Q ss_pred CCCCCCcc-ccccccccccccccCCCCCC
Q 041082 381 FFISPLPL-EIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 381 ~l~~~~p~-~~~~l~~L~~l~ls~N~l~g 408 (639)
.++..... ....+++|+.|++++|+++.
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 98544333 34568899999999999854
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=188.87 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=135.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 97 (323)
T 3tki_A 18 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97 (323)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSB
T ss_pred CCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHh
Confidence 468999999865 688999999865432 22345666666643 37899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc---
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT--- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~--- 534 (639)
.. ..+++..+..++.++++||+||| ..+|+||||||.||+++.++.+||+|||+++.+...... .+
T Consensus 98 ~~-~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y 173 (323)
T 3tki_A 98 PD-IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173 (323)
T ss_dssp TT-TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGG
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCc
Confidence 43 45899999999999999999999 668999999999999999999999999999865422110 00
Q ss_pred ---c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ---Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ---~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.............|........ + .....
T Consensus 174 ~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~------~------------~~~~~ 235 (323)
T 3tki_A 174 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN------P------------WKKID 235 (323)
T ss_dssp SCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST------T------------GGGSC
T ss_pred cCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC------c------------cccCC
Confidence 0 0113368888 6 888887643222223333332111000 0 01112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 236 ~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 236 SAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhh
Confidence 34567889999999999999999975
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=210.98 Aligned_cols=201 Identities=22% Similarity=0.295 Sum_probs=144.0
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++... .+..+|||++..... .....+..|+.+++. +||||+++|+|.++
T Consensus 380 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~ 459 (635)
T 4fl3_A 380 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKY 459 (635)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHH
T ss_pred CCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCCCHHHH
Confidence 468999999653 457899999875432 234567777777543 68999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ---- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~---- 535 (639)
+.. ...+++..+..|+.+|+.||+||| ..+|+||||||+||+++.++.+||+|||+|+.+..+... ...
T Consensus 460 l~~-~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t 535 (635)
T 4fl3_A 460 LQQ-NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWP 535 (635)
T ss_dssp HHH-CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------C
T ss_pred Hhh-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCc
Confidence 864 345899999999999999999999 567999999999999999999999999999877543211 000
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+.+.+.... .. ..+.
T Consensus 536 ~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~~~~---~~---------------~~p~ 595 (635)
T 4fl3_A 536 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAMLEKGE---RM---------------GCPA 595 (635)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTC---CC---------------CCCT
T ss_pred eeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCC---CC---------------CCCC
Confidence 0122378888 6 6 77776532 1111222221110 00 0112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||+|.+|+++|+.+...
T Consensus 596 ~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 596 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 2344677899999999999999999999999987544
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-20 Score=187.25 Aligned_cols=203 Identities=20% Similarity=0.307 Sum_probs=142.1
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++. +|+||+++|+
T Consensus 34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 113 (313)
T 1t46_A 34 GAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGD 113 (313)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEE
T ss_pred cCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCC
Confidence 46899999975 3467899999875432 223456666665432 6799999999
Q ss_pred chhccccCC-----------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 459 LEKCLYSSN-----------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 459 L~~~l~~~~-----------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|.+++.... ..+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||
T Consensus 114 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg 190 (313)
T 1t46_A 114 LLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFG 190 (313)
T ss_dssp HHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCG
T ss_pred HHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEcCCCCEEEcccc
Confidence 999886532 24899999999999999999999 5689999999999999999999999999
Q ss_pred ccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++......... .. ...+.++||| | | |+.|...... ...+...+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~-- 267 (313)
T 1t46_A 191 LARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-DSKFYKMIKEGFRM-- 267 (313)
T ss_dssp GGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-SHHHHHHHHHTCCC--
T ss_pred ccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-hhHHHHHhccCCCC--
Confidence 998765433210 00 0122368888 6 6 7777653211 11122222211110
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.. +......+.+++.+|++.+|++||++.||+++|+++...
T Consensus 268 --~~--------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 268 --LS--------------PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp --CC--------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CC--------------cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 00 011223567788999999999999999999999987654
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-20 Score=204.94 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=139.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.. ..|..+|+|.+..........+..|+.+++. +|||||++|+|.+++..
T Consensus 168 G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~ 247 (573)
T 3uto_A 168 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVAD 247 (573)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTC
T ss_pred ccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHH
Confidence 45899999986 4689999999876554445567777777543 68999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC--cceeeccccccccccccCCCccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN--MVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~--~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
....+++.....++.+|+.||+||| ..+|+||||||.|||++.+ +.+||+|||+|+.+.......+.
T Consensus 248 ~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~A 324 (573)
T 3uto_A 248 EHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA 324 (573)
T ss_dssp TTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccC
Confidence 5556899999999999999999999 6789999999999999854 78999999999987654321000
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++|+| | +|+.|+.+. +-.+.......... .+++.. .......+
T Consensus 325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-----~~~~~~~~i~~~~~--~~~~~~----------~~~~s~~~ 387 (573)
T 3uto_A 325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-----NDDETLRNVKSCDW--NMDDSA----------FSGISEDG 387 (573)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTCC--CCCSGG----------GTTSCHHH
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHhCCC--CCCccc----------ccCCCHHH
Confidence 0112367888 6 788887531 11111111111100 001110 01112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.++..+|++.+|++|||+.|+++
T Consensus 388 ~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 388 KDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67888999999999999999986
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-19 Score=168.86 Aligned_cols=181 Identities=26% Similarity=0.272 Sum_probs=128.3
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
+.++.+++.+. .+|..+ .++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46777888777 456554 357888888888888777777888888888888888888666666666666666666555
Q ss_pred CCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 159 NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 159 ~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
.++ +..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++.++
T Consensus 87 ~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------- 141 (208)
T 2o6s_A 87 QLQ------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------- 141 (208)
T ss_dssp CCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------
T ss_pred cCC------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-------
Confidence 544 3445556777888888888888887777777788888888888877765322
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 318 (639)
..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..+
T Consensus 142 -----------------------------~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 142 -----------------------------GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -----------------------------TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -----------------------------HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence 234556677777777776653 34567777777777777777766
Q ss_pred cCCCC
Q 041082 319 CRLAS 323 (639)
Q Consensus 319 ~~l~~ 323 (639)
+.++.
T Consensus 186 ~~l~~ 190 (208)
T 2o6s_A 186 GSVAP 190 (208)
T ss_dssp SSBCT
T ss_pred ccccC
Confidence 65543
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-20 Score=188.92 Aligned_cols=202 Identities=23% Similarity=0.338 Sum_probs=136.7
Q ss_pred CCcCcceEEEec-CCce----eeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK----VAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+.. +++|.+.... ......+..|+..++. +|++|+++|+|.+
T Consensus 26 G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v~~~~~~g~L~~ 105 (327)
T 3lzb_A 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 105 (327)
T ss_dssp CSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEEECCCSSCBHHH
T ss_pred CCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEEEEecCCCcHHH
Confidence 468999999854 4544 4666664322 2334566677766432 6789999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ---- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~---- 535 (639)
++......+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 106 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t 182 (327)
T 3lzb_A 106 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 182 (327)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCcc
Confidence 98765567899999999999999999999 5689999999999999999999999999998764332110 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+...+....... .+.
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~~------------------~~~ 242 (327)
T 3lzb_A 183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERLP------------------QPP 242 (327)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCCC------------------CCT
T ss_pred ccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCCCC------------------CCc
Confidence 0112367888 6 6 77777532 1222222222111000 011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+...+.+++..|++.+|++||++.|+++.|+++...
T Consensus 243 ~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 243 ICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 1223567788999999999999999999999988643
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=170.62 Aligned_cols=151 Identities=24% Similarity=0.272 Sum_probs=125.0
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
+++++++++ .+|..+. ++|++|+|++|.|++..|..|..+++|+.|+|++|++.+..|..|.++++|++|+|++|++
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 334445565 4666665 6899999999999987778899999999999999999998899999999999999999999
Q ss_pred ccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
+...+..|.++++|++|+|++|.|+ +..|..|..+++|+.|+|++|.+++..+..|..+++|
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKIN------------------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CccCHhHccCCCCCCEEECCCCCCC------------------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 9776666777766666666665554 4567778888999999999999999888889999999
Q ss_pred CEEEccCCCCCC
Q 041082 217 KRLNLYDNYLTS 228 (639)
Q Consensus 217 ~~L~Ls~N~l~~ 228 (639)
+.|+|++|.+..
T Consensus 155 ~~L~L~~N~~~c 166 (220)
T 2v9t_B 155 QTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEeCCCCcCC
Confidence 999999998865
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-20 Score=192.63 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=138.6
Q ss_pred CCcCcceEEEecC---------CceeeeEEechhhhhhhhhHHHHHHHH-------------------------------
Q 041082 407 SGFGSIYKARIQD---------GMKVAVKVFDLQYERAFKSFDVACDMM------------------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~~---------g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------------- 446 (639)
.++|.||++.... +..+|+|.+... ..+..|+..+
T Consensus 53 G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~ 127 (352)
T 2jii_A 53 DNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGV 127 (352)
T ss_dssp ETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEE
T ss_pred CCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccc
Confidence 4689999998763 789999998643 1222222221
Q ss_pred -----HhhhhhcCCCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc--ceeec
Q 041082 447 -----KKLVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--VAHLS 518 (639)
Q Consensus 447 -----~~Lv~ey~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--~~~i~ 518 (639)
..+|+||+ +|+|.+++... ...+++..+..|+.+++.||+||| ..+|+||||||+||+++.++ .+||+
T Consensus 128 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~~~~~~~~~kl~ 203 (352)
T 2jii_A 128 HQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFVDPEDQSQVTLA 203 (352)
T ss_dssp ETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEEETTEEEEEEEC
T ss_pred cCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEEcCCCCceEEEe
Confidence 13789999 99999998753 356999999999999999999999 56899999999999999998 99999
Q ss_pred cccccccccccCCC------------cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHH
Q 041082 519 DFGMAKLLLKEDQS------------FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN 567 (639)
Q Consensus 519 dfgla~~~~~~~~~------------~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~ 567 (639)
|||+++.+...... .+ ....+.++||| | ||+.|..........+..+..
T Consensus 204 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~ 283 (352)
T 2jii_A 204 GYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQ 283 (352)
T ss_dssp CGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHH
T ss_pred cCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHH
Confidence 99999876533210 00 00122368888 6 788877643222222222221
Q ss_pred hhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 568 DLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 568 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
... ....+..+..... ......+.+++..|++.+|++||++.+|+++|+++....
T Consensus 284 ~~~-~~~~~~~~~~~~~---------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 284 KFV-DKPGPFVGPCGHW---------IRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp HHH-HSCCCEECTTSCE---------ECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred hcc-CChhhhhhhcccc---------CCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence 111 1111111111100 011235677888999999999999999999999886553
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=181.63 Aligned_cols=219 Identities=19% Similarity=0.204 Sum_probs=147.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 99 (319)
T 4euu_A 20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTV 99 (319)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHH
Confidence 568999999875 488999999875432 22345556666532 278999999999999
Q ss_pred cccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccccCCCc---
Q 041082 463 LYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 463 l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+.... ..+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+.........
T Consensus 100 l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~ 176 (319)
T 4euu_A 100 LEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176 (319)
T ss_dssp HHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCC
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecc
Confidence 87632 23899999999999999999999 5689999999999999 888999999999998765432210
Q ss_pred -------c------------ccccccccccc--c-------CCCCCCCccCCCccchHHHH---HhhCCCCcceeeeccc
Q 041082 534 -------T------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWV---NDLLPISVMEVVDVNL 582 (639)
Q Consensus 534 -------~------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~---~~~~~~~~~~~~d~~l 582 (639)
+ ....+.++||| | ||+.|...... .....+.+ ....+....+.+....
T Consensus 177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~ 255 (319)
T 4euu_A 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG-PRRNKEVMYKIITGKPSGAISGVQKAE 255 (319)
T ss_dssp SCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTC-GGGCHHHHHHHHHHCCTTCCEEEECST
T ss_pred cCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc-cchhHHHHHHHhcCCCcccchhhhccc
Confidence 0 01123478999 6 88888753221 11111221 1122222111111000
Q ss_pred cc------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 583 LS------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 583 ~~------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.. ...............+.++...|++.+|++|||+.|+++...+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 256 NGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp TCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred CCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 00 000011223455667788999999999999999999999887654
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-20 Score=189.82 Aligned_cols=203 Identities=22% Similarity=0.367 Sum_probs=139.3
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++..... ..+|+|.+.... ......+..|...++ .+|+||+++|+|.
T Consensus 36 G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~ 115 (298)
T 3f66_A 36 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR 115 (298)
T ss_dssp ETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHH
T ss_pred cCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHH
Confidence 46899999986432 358889876432 223455666666643 2689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----ccc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----FTQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~~~- 535 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 116 ~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~ 192 (298)
T 3f66_A 116 NFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192 (298)
T ss_dssp HHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----C
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCC
Confidence 999766667899999999999999999999 568999999999999999999999999999866432211 000
Q ss_pred --------------cccccccccc--c-------CCCC-CCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRN-PQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | ||.. |.... ....+...+..... ...+
T Consensus 193 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~----------- 254 (298)
T 3f66_A 193 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGRR-----LLQP----------- 254 (298)
T ss_dssp CBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS--CTTTHHHHHHTTCC-----CCCC-----------
T ss_pred CCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC--CHHHHHHHHhcCCC-----CCCC-----------
Confidence 0112367888 6 6443 33221 11122222211100 0001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+...+.+++..|++.+|++||++.|++++|+++...+
T Consensus 255 --~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 255 --EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred --ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 112235778889999999999999999999999886543
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-20 Score=188.07 Aligned_cols=205 Identities=18% Similarity=0.170 Sum_probs=138.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... ...+..|+..++ .+|+||+ +|+|.+++.
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~ 96 (330)
T 2izr_A 20 GNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFD 96 (330)
T ss_dssp -CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred cCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHH
Confidence 46899999985 5689999999865432 235566665543 2689999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc-----eeeccccccccccccCCCc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV-----AHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~-----~~i~dfgla~~~~~~~~~~------ 533 (639)
.....+++..+..|+.+++.||+||| ..+|+||||||+||+++.++. +||+|||+|+.+.......
T Consensus 97 ~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~ 173 (330)
T 2izr_A 97 LCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYRE 173 (330)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccc
Confidence 65567999999999999999999999 568999999999999999887 9999999998764432110
Q ss_pred -ccc---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 534 -TQN---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 534 -~~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
... ..+.++||| | ||+.|....- ...+.+...... +........
T Consensus 174 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~--------~~~~~~~~~- 242 (330)
T 2izr_A 174 HKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--ADTLKERYQKIG--------DTKRATPIE- 242 (330)
T ss_dssp CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--CSSHHHHHHHHH--------HHHHHSCHH-
T ss_pred cCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc--cccHHHHHHHHH--------hhhccCCHH-
Confidence 000 012256666 5 6666654321 111111111000 000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.....+. .+.+++..|++.+|++||++.+|++.|+++.+.
T Consensus 243 --~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 243 --VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp --HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred --HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 0000122 788899999999999999999999999877544
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-20 Score=196.98 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=139.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..||||++..... ...+..|..+++ .+||||+ +|+|.+++.
T Consensus 18 G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~ 94 (483)
T 3sv0_A 18 GSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFN 94 (483)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHH
Confidence 46899999985 5689999998765432 234555555532 2789999 899999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCcc-------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFT------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~~------- 534 (639)
.....++|..+..|+.+|+.||+||| ..+|+||||||.|||+ +.++.+||+|||+++.+........
T Consensus 95 ~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~ 171 (483)
T 3sv0_A 95 FCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENK 171 (483)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCC
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccccccc
Confidence 55567999999999999999999999 5689999999999999 6889999999999987654332100
Q ss_pred cc---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 QN---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 ~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
.. ..+.+.||| | ||+.|....... ...+.............++
T Consensus 172 ~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~--~~~~~~~~i~~~~~~~~~~----------- 238 (483)
T 3sv0_A 172 NLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG--TKKQKYEKISEKKVATSIE----------- 238 (483)
T ss_dssp CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS--SHHHHHHHHHHHHHHSCHH-----------
T ss_pred ccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch--hHHHHHHHHhhccccccHH-----------
Confidence 00 012256777 5 666666532111 1111100000000000000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.....+...+.+++..|++.+|++||+|.+|++.|+.+..
T Consensus 239 ~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 239 ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 0001123467889999999999999999999999998854
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-20 Score=182.48 Aligned_cols=203 Identities=22% Similarity=0.342 Sum_probs=139.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +..+|+|++.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 21 G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 99 (271)
T 3kmu_A 21 NHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNV 99 (271)
T ss_dssp ETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHH
T ss_pred CCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHH
Confidence 468899999985 7889999987543 222345666665522 378999999999999
Q ss_pred cccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc------c
Q 041082 463 LYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT------Q 535 (639)
Q Consensus 463 l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~------~ 535 (639)
+.... ..+++..+..++.+++.||+|||.. .++|+||||||+||+++.++.++++|||++..........+ .
T Consensus 100 l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y~aPE 178 (271)
T 3kmu_A 100 LHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPE 178 (271)
T ss_dssp HHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGGSCHH
T ss_pred HhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccccChh
Confidence 97643 3589999999999999999999932 33499999999999999999999999888765432221110 0
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | ||+.|.... .-.+......... ..+.+ +..+...
T Consensus 179 ~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~----~~~~~----------~~~~~~~ 239 (271)
T 3kmu_A 179 ALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-----SNMEIGMKVALEG----LRPTI----------PPGISPH 239 (271)
T ss_dssp HHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS-----CHHHHHHHHHHSC----CCCCC----------CTTCCHH
T ss_pred hhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc-----ChHHHHHHHHhcC----CCCCC----------CCCCCHH
Confidence 0111258888 6 788877532 1111111111010 00000 1112234
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+.+++..|++.+|++|||+.||++.|+++++
T Consensus 240 ~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 240 VSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 6778889999999999999999999998753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-22 Score=219.14 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=120.5
Q ss_pred CCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 73 GNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 73 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
..+++|+.|+|++|.+. .+|.+++++++|+.|++++|......|. .+..+.+.+.+|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence 56677777777777776 6777777777777777765541000000 00111133444555555555555
Q ss_pred Ee-cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 153 LD-LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 153 L~-Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
|+ ++.|.+ ..|..+.+++|.++...+ ..|+.|+|++|.++++ |. |+.+++|+.|+|++|.++.
T Consensus 414 L~~l~~n~~-----~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~--- 477 (567)
T 1dce_A 414 VDPMRAAYL-----DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA--- 477 (567)
T ss_dssp HCGGGHHHH-----HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC---
T ss_pred Ccchhhccc-----chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc---
Confidence 55 444432 234444445555443221 1356666666666653 43 6666666666666665553
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+|..++.+++|+.|+|++|.|++ +| .++.+++|+.|++++|+++
T Consensus 478 ----------------------------------lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 478 ----------------------------------LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp ----------------------------------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred ----------------------------------cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 23334455566666666666664 44 5666666666666666666
Q ss_pred CCC-chhhcCCCCCcEEECCCCcCcccCCcc---ccCCCCCCEEeC
Q 041082 312 GPI-PYEFCRLASLYELDLSGNKLSGSIPTC---FGNQTSLRILSL 353 (639)
Q Consensus 312 ~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~l 353 (639)
+.+ |..|+.+++|+.|+|++|.+++.+|.. +..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 655 666666666666666666666554422 223566666653
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-20 Score=185.35 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=139.8
Q ss_pred CCcCcceEEEecC-C-------ceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD-G-------MKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g-------~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.... + ..+++|.+..........+..|+..++ .+|+||+++|+
T Consensus 19 G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 98 (289)
T 4fvq_A 19 GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGS 98 (289)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCB
T ss_pred CCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCC
Confidence 4688999987653 2 469999987666555667777777744 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--------eeeccccccccccccC
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--------AHLSDFGMAKLLLKED 530 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--------~~i~dfgla~~~~~~~ 530 (639)
|.+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++. +|++|||+++......
T Consensus 99 L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~ 175 (289)
T 4fvq_A 99 LDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKD 175 (289)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCcc
Confidence 99999865556899999999999999999999 567999999999999998887 9999999997654321
Q ss_pred C-------Cccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 531 Q-------SFTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 531 ~-------~~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
. ..+. ...+.++||| | ||+.|...... .......... ........
T Consensus 176 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~-~~~~~~~~~~--~~~~~~~~----------- 241 (289)
T 4fvq_A 176 ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD-SQRKLQFYED--RHQLPAPK----------- 241 (289)
T ss_dssp HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-HHHHHHHHHT--TCCCCCCS-----------
T ss_pred ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc-hHHHHHHhhc--cCCCCCCC-----------
Confidence 1 0010 1234478888 6 65444322111 1111111110 00000000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
...+.+++..|++.+|++|||+.|+++.|+++..
T Consensus 242 -------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 242 -------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp -------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred -------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 1135668889999999999999999999998854
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-20 Score=187.95 Aligned_cols=192 Identities=20% Similarity=0.254 Sum_probs=135.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..|..+|+|++.... ......+..|+..++. +|+||+++|+|.+++
T Consensus 26 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l 105 (328)
T 3fe3_A 26 GNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYL 105 (328)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHH
Confidence 56899999986 578999999986543 2233456667766442 689999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----c-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 106 ~~~-~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a 181 (328)
T 3fe3_A 106 VAH-GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAA 181 (328)
T ss_dssp HHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCC
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeC
Confidence 643 35889999999999999999999 5689999999999999999999999999998665332110 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|... .+..+.......... .+ +......
T Consensus 182 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~-----~~~~~~~~~i~~~~~------~~----------p~~~s~~ 240 (328)
T 3fe3_A 182 PELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-----QNLKELRERVLRGKY------RI----------PFYMSTD 240 (328)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCCC------CC----------CTTSCHH
T ss_pred cccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC------CC----------CCCCCHH
Confidence 00112367888 6 78777653 222222211111100 00 0011224
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.++..+|++.+|++|||+.|+++
T Consensus 241 ~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 241 CENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 567888999999999999999975
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=182.92 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=143.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..+|+|.+..... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 24 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~ 102 (288)
T 3kfa_A 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 102 (288)
T ss_dssp GTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHH
T ss_pred CCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHh
Confidence 4689999998764 78899999865432 3456666776644 268999999999999875
Q ss_pred -CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-c--------
Q 041082 466 -SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-Q-------- 535 (639)
Q Consensus 466 -~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-~-------- 535 (639)
....+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.......... .
T Consensus 103 ~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~ 179 (288)
T 3kfa_A 103 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179 (288)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGC
T ss_pred cccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcC
Confidence 3345899999999999999999999 55799999999999999999999999999987654332100 0
Q ss_pred -------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | | |+.|.... ....+.+.+...... ..+..+..
T Consensus 180 aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~ 239 (288)
T 3kfa_A 180 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYRM------------------ERPEGCPE 239 (288)
T ss_dssp CHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC------------------CCCTTCCH
T ss_pred ChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhccCCC------------------CCCCCCCH
Confidence 0112367888 6 6 66666431 112222222211100 00112234
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+.+++..|++.+|++||++.||++.|+.+...
T Consensus 240 ~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 240 KVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 577888999999999999999999999988654
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-20 Score=186.76 Aligned_cols=204 Identities=22% Similarity=0.373 Sum_probs=141.6
Q ss_pred CCcCcceEEEecCC----ceeeeEEechhhh-hhhhhHHHHHHHHH---------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDLQYE-RAFKSFDVACDMMK---------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~~~~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++...+. ..+|+|.+..... .....+..|+..++ .+|+||+.+|+|.
T Consensus 32 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~ 111 (298)
T 3pls_A 32 GHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLL 111 (298)
T ss_dssp ETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHH
T ss_pred CCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHH
Confidence 46899999986432 3699998864332 23456666766643 3688999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----ccc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----FTQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~~~- 535 (639)
+++......+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+++........ ...
T Consensus 112 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 188 (298)
T 3pls_A 112 QFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188 (298)
T ss_dssp HHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCT
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCC
Confidence 999876667899999999999999999999 567999999999999999999999999999865432210 000
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | ||+.|.... .....+...+....... .
T Consensus 189 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~------------------~ 249 (298)
T 3pls_A 189 RLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-IDPFDLTHFLAQGRRLP------------------Q 249 (298)
T ss_dssp TCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-SCGGGHHHHHHTTCCCC------------------C
T ss_pred CCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-CCHHHHHHHhhcCCCCC------------------C
Confidence 0112367777 5 544443211 11222222222111100 0
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++|||+.+++++|+++...+
T Consensus 250 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l 289 (298)
T 3pls_A 250 PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL 289 (298)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence 1112235778889999999999999999999999987664
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=185.78 Aligned_cols=204 Identities=20% Similarity=0.295 Sum_probs=140.7
Q ss_pred CCcCcceEEEe------cCCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI------QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l------~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++|
T Consensus 38 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~ 117 (316)
T 2xir_A 38 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117 (316)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTE
T ss_pred CCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCC
Confidence 46899999974 3468899999865432 22345556665532 2678999999
Q ss_pred CchhccccCCc---------------cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSSNY---------------ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~~~---------------~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.+++..... .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+
T Consensus 118 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~ 194 (316)
T 2xir_A 118 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGL 194 (316)
T ss_dssp EHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGG
T ss_pred cHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEECCCcc
Confidence 99998875322 2889999999999999999999 56899999999999999999999999999
Q ss_pred cccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 523 AKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 523 a~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
++......... .. ...+.++||| | | |+.|....... ..+...+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-~~~~~~~~~~~~~~-- 271 (316)
T 2xir_A 195 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRRLKEGTRMR-- 271 (316)
T ss_dssp GSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS-HHHHHHHHHTCCCC--
T ss_pred ccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh-HHHHHHhccCccCC--
Confidence 98764332110 00 0122378888 6 6 77776532111 11111111111000
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
. +..+...+.+++.+|++.+|++||++.||++.|+.+.+..
T Consensus 272 ------~----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 272 ------A----------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp ------C----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------C----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 0 0111234677889999999999999999999999887543
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-20 Score=191.86 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=136.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. ..|..+|+|++..........+..|+..++ .+||||+++|+|.+++..
T Consensus 100 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~ 179 (373)
T 2x4f_A 100 GRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIID 179 (373)
T ss_dssp ----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHH
T ss_pred CcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHh
Confidence 46899999986 468899999987655445567777877754 378999999999998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee--cCCcceeeccccccccccccCCCcc---------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL--GNNMVAHLSDFGMAKLLLKEDQSFT--------- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill--~~~~~~~i~dfgla~~~~~~~~~~~--------- 534 (639)
....+++..+..++.++++||+||| ..+|+||||||+||++ ++++.+||+|||+++..........
T Consensus 180 ~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a 256 (373)
T 2x4f_A 180 ESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLA 256 (373)
T ss_dssp TGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeC
Confidence 5567899999999999999999999 5679999999999999 5678999999999987654321100
Q ss_pred -c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
. ...+.++||| | ||+.|....- ....+..+...... +.+. ........+
T Consensus 257 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~-~~~~~~~i~~~~~~------~~~~----------~~~~~~~~~ 319 (373)
T 2x4f_A 257 PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN-DAETLNNILACRWD------LEDE----------EFQDISEEA 319 (373)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS-HHHHHHHHHHTCCC------SCSG----------GGTTSCHHH
T ss_pred hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHhccCC------CChh----------hhccCCHHH
Confidence 0 1122368888 6 8888765310 01111111111000 0000 001122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 320 ~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 320 KEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcCCChhhCCCHHHHhc
Confidence 77889999999999999999986
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=186.96 Aligned_cols=219 Identities=19% Similarity=0.208 Sum_probs=147.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|++.++ .+|+||+++|+|.++
T Consensus 20 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~ 99 (396)
T 4eut_A 20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTV 99 (396)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHH
Confidence 568999999875 488999999875432 22345556666533 278999999999999
Q ss_pred cccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccccCCCc---
Q 041082 463 LYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 463 l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+.... ..+++..+..++.+++.||+||| ..+|+||||||.||++ ++++.+||+|||+|+.........
T Consensus 100 l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~ 176 (396)
T 4eut_A 100 LEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY 176 (396)
T ss_dssp TTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSS
T ss_pred HHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcccccc
Confidence 87632 23899999999999999999999 5679999999999999 888899999999998765432110
Q ss_pred -------cc------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHh---hCCCCcceeeeccc
Q 041082 534 -------TQ------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND---LLPISVMEVVDVNL 582 (639)
Q Consensus 534 -------~~------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~---~~~~~~~~~~d~~l 582 (639)
+. ...+.++||| | ||+.|.......... .+.+.. ..+......+....
T Consensus 177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ 255 (396)
T 4eut_A 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN-KEVMYKIITGKPSGAISGVQKAE 255 (396)
T ss_dssp SCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC-HHHHHHHHHSCCTTCCEEEECST
T ss_pred CCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch-HHHHHHHhcCCCcccchhheecc
Confidence 00 1112378999 7 899887643221211 122211 11221111111100
Q ss_pred cc------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 583 LS------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 583 ~~------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+ ...............+.++...|++.+|++||++.|+++.+.++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il 308 (396)
T 4eut_A 256 NGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (396)
T ss_dssp TCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHH
T ss_pred CCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHh
Confidence 00 000011122456667788999999999999999999999987764
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=185.48 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=141.6
Q ss_pred CCcCcceEEEecC-C-----ceeeeEEechhhh-hhhhhHHHHHHHHHh---------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARIQD-G-----MKVAVKVFDLQYE-RAFKSFDVACDMMKK---------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g-----~~vavK~l~~~~~-~~~~~f~~e~~~~~~---------------------Lv~ey~~~gs 458 (639)
.++|.||++.... + ..+|+|.+..... .....+..|+..++. +|+||+++|+
T Consensus 57 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 136 (333)
T 2i1m_A 57 GAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGD 136 (333)
T ss_dssp CSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEE
T ss_pred CCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCc
Confidence 4689999998643 2 4799999865432 233456666666432 5799999999
Q ss_pred chhccccC-------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 459 LEKCLYSS-------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 459 L~~~l~~~-------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
|.+++... ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.
T Consensus 137 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 213 (333)
T 2i1m_A 137 LLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARD 213 (333)
T ss_dssp HHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGGGEEEBCCCGGGCC
T ss_pred HHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCCCeEEECccccccc
Confidence 99988641 235789999999999999999999 56899999999999999999999999999986
Q ss_pred ccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceee
Q 041082 526 LLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVV 578 (639)
Q Consensus 526 ~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (639)
........ .. ...+.++||| | | |+.|...... ...+...+.......
T Consensus 214 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~----- 287 (333)
T 2i1m_A 214 IMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-NSKFYKLVKDGYQMA----- 287 (333)
T ss_dssp GGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-SHHHHHHHHHTCCCC-----
T ss_pred cccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch-hHHHHHHHhcCCCCC-----
Confidence 64332110 00 1123378888 6 6 7777653211 111222222211110
Q ss_pred eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 579 DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 579 d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+ ..+...+.+++..|++.+|++||++.||++.|+++....
T Consensus 288 ~~-------------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 328 (333)
T 2i1m_A 288 QP-------------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQED 328 (333)
T ss_dssp CC-------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CC-------------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence 01 111235677889999999999999999999999886654
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-20 Score=190.73 Aligned_cols=203 Identities=24% Similarity=0.433 Sum_probs=137.8
Q ss_pred CCcCcceEEEecC-----CceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD-----GMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~-----g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.... +..+|+|.+..... .....+..|+..++ .+|+||+++|+|.
T Consensus 55 G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~ 134 (333)
T 1mqb_A 55 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALD 134 (333)
T ss_dssp CSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHH
T ss_pred CCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHH
Confidence 5689999998653 24599999875432 22345666776643 2789999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---cc---
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FT--- 534 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~--- 534 (639)
+++......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ..
T Consensus 135 ~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 211 (333)
T 1mqb_A 135 KFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK 211 (333)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------C
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCC
Confidence 998765567999999999999999999999 567999999999999999999999999999876533211 00
Q ss_pred ------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 535 ------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 535 ------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
....+.++||| | | |+.|..... ...+.+.+..... . ..
T Consensus 212 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--~~~~~~~~~~~~~-----~-------------~~ 271 (333)
T 1mqb_A 212 IPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS--NHEVMKAINDGFR-----L-------------PT 271 (333)
T ss_dssp CCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHHTTCC-----C-------------CC
T ss_pred ccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHHCCCc-----C-------------CC
Confidence 00112367888 6 6 777764321 1111111111000 0 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+|++.+|++||++.||+++|+++....
T Consensus 272 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 272 PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1122335678899999999999999999999999886543
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=182.21 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=142.5
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|.++
T Consensus 28 G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~ 107 (291)
T 1xbb_A 28 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKY 107 (291)
T ss_dssp CSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHH
T ss_pred ccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEEEEEeCCCCCHHHH
Confidence 468999999642 467899999865432 224566677776442 68999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ---- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~---- 535 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... ..
T Consensus 108 l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 183 (291)
T 1xbb_A 108 LQQN-RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWP 183 (291)
T ss_dssp HHHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCC
T ss_pred HHhC-cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCC
Confidence 8753 35899999999999999999999 5689999999999999999999999999998764432110 00
Q ss_pred -----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 536 -----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
...+.++||| | | |+.|.... ....+.+.+...... . .+.
T Consensus 184 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~~~~--------~----------~~~ 243 (291)
T 1xbb_A 184 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAMLEKGERM--------G----------CPA 243 (291)
T ss_dssp GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTTCCC--------C----------CCT
T ss_pred ceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCCC--------C----------CCC
Confidence 0112378998 6 7 88887532 112222222211100 0 011
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
.+...+.+++..|++.+|++||++.+|+++|+++-...
T Consensus 244 ~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 244 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 22335778889999999999999999999999886554
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=183.37 Aligned_cols=212 Identities=22% Similarity=0.254 Sum_probs=137.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++...+|..+|+|++..... .....+..|+..++ .+|+||++ |++.+.+.
T Consensus 32 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 110 (311)
T 3niz_A 32 GTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLD 110 (311)
T ss_dssp CSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHH
T ss_pred CCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHH
Confidence 568999999988899999999865432 22345666666644 26899998 47888777
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 111 ~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a 187 (311)
T 3niz_A 111 ENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRA 187 (311)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCC
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCC
Confidence 65566899999999999999999999 5689999999999999999999999999998764321110
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC---CCcceeeecc-----ccccccc--c
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP---ISVMEVVDVN-----LLSMEDK--Y 589 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~---~~~~~~~d~~-----l~~~~~~--~ 589 (639)
+. ...+.++||| | ||+.|...... ...+.......-. ....+.-+.. ....... .
T Consensus 188 PE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (311)
T 3niz_A 188 PDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD-DDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPW 266 (311)
T ss_dssp HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST-TTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCH
T ss_pred HHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcH
Confidence 00 1123478999 6 88888764322 1222222221111 0000000000 0000000 0
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.++..+|++.+|++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 267 SSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0000112235678999999999999999999985
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=181.00 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=136.6
Q ss_pred CCcCcceEEEec--CC--ceeeeEEechhh---hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ--DG--MKVAVKVFDLQY---ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g--~~vavK~l~~~~---~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~ 460 (639)
.++|.||++... ++ ..+|+|.+.... ......+..|+..++. +|+||+++|+|.
T Consensus 29 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~ 108 (291)
T 1u46_A 29 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLL 108 (291)
T ss_dssp ---CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHH
T ss_pred CCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCceeeEecccCCCHH
Confidence 468899999863 23 368999886442 2334566677766442 689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ-- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~-- 535 (639)
+++......+++..+.+++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++......... ..
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 185 (291)
T 1u46_A 109 DRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRK 185 (291)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----
T ss_pred HHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCC
Confidence 988765456899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred -------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 -------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 -------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | | |+.|.... .-.+.+........... .
T Consensus 186 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~~--------------~ 246 (291)
T 1u46_A 186 VPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-----NGSQILHKIDKEGERLP--------------R 246 (291)
T ss_dssp CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTSCCCCC--------------C
T ss_pred CCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-----CHHHHHHHHHccCCCCC--------------C
Confidence 0112378888 6 6 78776532 11222221111110000 0
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+..+...+.+++.+|++.+|++||++.++++.|+++...
T Consensus 247 ~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 247 PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred CcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 112234577888999999999999999999999988643
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-20 Score=188.11 Aligned_cols=196 Identities=21% Similarity=0.182 Sum_probs=124.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHH---------------------HhhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMM---------------------KKLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|||++...... ....+..+.... ..+||||+ +|+|.++
T Consensus 68 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~ 146 (311)
T 3p1a_A 68 GSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQH 146 (311)
T ss_dssp ETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHH
T ss_pred CCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHH
Confidence 568999999876 6899999987543221 111222222221 13689999 6789888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+......++|..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 147 ~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~ 223 (311)
T 3p1a_A 147 CEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYM 223 (311)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGC
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCcccc
Confidence 7765556999999999999999999999 557999999999999999999999999999876533211000
Q ss_pred ------cccccccccccCCCCCCCccCCCccchHHHHHhhC-CCCc---ceeeeccccccccccccchHHHHHHHHHHHh
Q 041082 536 ------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLL-PISV---MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605 (639)
Q Consensus 536 ------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~-~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~ 605 (639)
...+.++||| +-|..+.+.+.... +... ..+....... +........+.+++.
T Consensus 224 aPE~~~~~~~~~~Diw-----------slG~il~el~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~li~ 286 (311)
T 3p1a_A 224 APELLQGSYGTAADVF-----------SLGLTILEVACNMELPHGGEGWQQLRQGYLPP------EFTAGLSSELRSVLV 286 (311)
T ss_dssp CGGGGGTCCSTHHHHH-----------HHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCH------HHHTTSCHHHHHHHH
T ss_pred CHhHhcCCCCchhhHH-----------HHHHHHHHHHhCCCCCCCccHHHHHhccCCCc------ccccCCCHHHHHHHH
Confidence 0112245555 22333333322211 1100 0000000000 001112345778889
Q ss_pred hccCCCCCCCCCHHHHHH
Q 041082 606 ECTAESPKQRINAKESVT 623 (639)
Q Consensus 606 ~C~~~~p~~RP~m~~v~~ 623 (639)
+|++.+|++|||+.|+++
T Consensus 287 ~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 287 MMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHSCSSTTTSCCHHHHHT
T ss_pred HHcCCChhhCcCHHHHHh
Confidence 999999999999999985
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=197.74 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=130.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHH---HHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVA---CDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e---~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .|..+|+|+++..... .......+ +..++ ++||||+++|+|
T Consensus 200 G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL 279 (689)
T 3v5w_A 200 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL 279 (689)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred ccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcH
Confidence 469999999864 5899999999754321 11222222 22221 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T-- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~-- 534 (639)
.+++... ..++......++.+|+.||+||| ..+|+||||||.|||+|.++.+||+|||+|+.+....... +
T Consensus 280 ~~~l~~~-~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~ 355 (689)
T 3v5w_A 280 HYHLSQH-GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG 355 (689)
T ss_dssp HHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGG
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcC
Confidence 9998753 35888888999999999999999 7789999999999999999999999999998775443210 0
Q ss_pred ----c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ----Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ----~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++|+| | ||+.|..+.-. .+..+......... +.. +...
T Consensus 356 YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~--~~~~~i~~~i~~~~------~~~----------p~~~ 417 (689)
T 3v5w_A 356 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--KDKHEIDRMTLTMA------VEL----------PDSF 417 (689)
T ss_dssp GCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGC--CCHHHHHHHHHHCC------CCC----------CTTS
T ss_pred ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhhcCCC------CCC----------CccC
Confidence 0 0112367888 6 88888753211 11111111111000 000 0011
Q ss_pred HHHHHHHHhhccCCCCCCCCC-----HHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRIN-----AKESV 622 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~-----m~~v~ 622 (639)
...+.++..+|++.+|++|++ +.||.
T Consensus 418 S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 418 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred CHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 123567888999999999998 56665
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=181.20 Aligned_cols=193 Identities=20% Similarity=0.244 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--------------------------hhhhHHHHHHHHH------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--------------------------AFKSFDVACDMMK------------ 447 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--------------------------~~~~f~~e~~~~~------------ 447 (639)
.++|.||++.. .++..+|+|++...... ....+..|+.+++
T Consensus 24 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 103 (298)
T 2zv2_A 24 GSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVE 103 (298)
T ss_dssp --CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 46899999986 46789999998643211 1234566666643
Q ss_pred ----------hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceee
Q 041082 448 ----------KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHL 517 (639)
Q Consensus 448 ----------~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i 517 (639)
.+|+||+++|+|.+++.. ..+++.....++.++++||+||| ..+|+||||||.||+++.++.+||
T Consensus 104 ~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl 178 (298)
T 2zv2_A 104 VLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKI 178 (298)
T ss_dssp EEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEECCCCCEEE
Confidence 268999999999887643 46899999999999999999999 568999999999999999999999
Q ss_pred ccccccccccccCCC-----------ccccc-------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhC
Q 041082 518 SDFGMAKLLLKEDQS-----------FTQNT-------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL 570 (639)
Q Consensus 518 ~dfgla~~~~~~~~~-----------~~~~~-------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~ 570 (639)
+|||+++........ .+... .+.++||| | ||+.|..+. ....+.....
T Consensus 179 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-----~~~~~~~~~~ 253 (298)
T 2zv2_A 179 ADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE-----RIMCLHSKIK 253 (298)
T ss_dssp CCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHH
T ss_pred ecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc-----cHHHHHHHHh
Confidence 999999876533210 00000 12356888 6 787776531 1112211111
Q ss_pred CCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 571 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... +. +. .......+.+++.+|++.+|++||++.||++
T Consensus 254 ~~~~-~~--~~-----------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 254 SQAL-EF--PD-----------QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HCCC-CC--CS-----------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cccC-CC--CC-----------ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 0000 00 00 0011234677889999999999999999875
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-20 Score=188.08 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=135.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... |..+|+|.+.... ..+.+..|+..++ .+|+||+++|+|.+++..
T Consensus 32 G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 108 (278)
T 1byg_A 32 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 108 (278)
T ss_dssp CSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHH
T ss_pred CCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHh
Confidence 468899999875 7899999986432 3345666666632 268999999999998865
Q ss_pred CC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--------cc-
Q 041082 466 SN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------TQ- 535 (639)
Q Consensus 466 ~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------~~- 535 (639)
.. ..+++..+.+++.++++||+||| ..+++||||||+||+++.++.+||+|||+++......... +.
T Consensus 109 ~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~ 185 (278)
T 1byg_A 109 RGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 185 (278)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHH
Confidence 32 23789999999999999999999 5679999999999999999999999999998654322110 00
Q ss_pred ---cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 536 ---NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 536 ---~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
...+.++||| | | |+.|.... ....+...+..... +. .+..+...+.+
T Consensus 186 ~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~--------~~----------~~~~~~~~l~~ 245 (278)
T 1byg_A 186 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGYK--------MD----------APDGCPPAVYE 245 (278)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTCC--------CC----------CCTTCCHHHHH
T ss_pred hCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhcCCC--------CC----------CcccCCHHHHH
Confidence 1123378888 6 6 77776532 11122222111100 00 01122335677
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
++..|++.+|++||++.|+++.|++++..
T Consensus 246 li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 246 VMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999998754
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=184.55 Aligned_cols=200 Identities=25% Similarity=0.278 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------------~Lv~ey~~~ 456 (639)
.++|.||++... .+..+|+|++..........+..|+..++ .+|+||+.
T Consensus 39 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~- 117 (337)
T 3ll6_A 39 GGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK- 117 (337)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-
T ss_pred CCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-
Confidence 468899999864 68899999885444433445555554422 25677885
Q ss_pred CCchhcccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--
Q 041082 457 GSLEKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-- 532 (639)
Q Consensus 457 gsL~~~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-- 532 (639)
|+|.+++.. ....+++..+.+|+.+++.||+|||.. .++|+||||||.||+++.++.+||+|||+++........
T Consensus 118 g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~ 196 (337)
T 3ll6_A 118 GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSW 196 (337)
T ss_dssp EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC----
T ss_pred CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccc
Confidence 788887754 344689999999999999999999932 234999999999999999999999999999876532110
Q ss_pred ---------------------ccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 533 ---------------------FTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 533 ---------------------~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
.+. ...+.++||| | ||+.|..+.. ..
T Consensus 197 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-----------------~~ 259 (337)
T 3ll6_A 197 SAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA-----------------KL 259 (337)
T ss_dssp ---------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred cccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh-----------------HH
Confidence 000 0012255666 4 5555543210 01
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
++++....... ...+...+.+++..|++.+|++||++.|+++.|+.+...
T Consensus 260 ~~~~~~~~~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 260 RIVNGKYSIPP------HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp ------CCCCT------TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhhcCcccCCc------ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 11111110000 001112356788899999999999999999999988764
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=181.81 Aligned_cols=197 Identities=21% Similarity=0.332 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH------------------------------------Hhh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM------------------------------------KKL 449 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~------------------------------------~~L 449 (639)
.++|.||++... ++..+|+|.+..... .+..|+..+ ..+
T Consensus 22 G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (284)
T 2a19_B 22 GGFGQVFKAKHRIDGKTYVIKRVKYNNE----KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFI 97 (284)
T ss_dssp SSSCCEEEEEETTTCCEEEEEEEECCSG----GGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEeccccH----HHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEE
Confidence 468899999875 689999999875432 333444442 137
Q ss_pred hhhcCCCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 450 VLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 450 v~ey~~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|+||+++|+|.+++... ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++....
T Consensus 98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 174 (284)
T 2a19_B 98 QMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKN 174 (284)
T ss_dssp EECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEESSC
T ss_pred EEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEEECcchhheeccc
Confidence 88999999999998652 346899999999999999999999 56899999999999999999999999999987654
Q ss_pred cCCCccc--------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 529 EDQSFTQ--------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 529 ~~~~~~~--------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
....... ...+.++||| | ||..|.... ..+....... .+. .
T Consensus 175 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~~~~~~----~~~----~- 238 (284)
T 2a19_B 175 DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFTDLRDG----IIS----D- 238 (284)
T ss_dssp CSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHHHHHTT----CCC----T-
T ss_pred cccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHHHhhcc----ccc----c-
Confidence 3211000 0112356666 4 555443210 0111110000 000 0
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHh
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKN 635 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~ 635 (639)
.....+.+++.+|++.+|++||++.|+++.|..++....++
T Consensus 239 ---------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~ 279 (284)
T 2a19_B 239 ---------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKN 279 (284)
T ss_dssp ---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-----
T ss_pred ---------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCcc
Confidence 01123567888999999999999999999999987665443
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=185.88 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=137.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... ++..+|+|.+..... ....+..|+..++. +|+||+++|+|.+++..
T Consensus 16 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~ 94 (321)
T 1tki_A 16 GEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINT 94 (321)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTS
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecCcc-cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHh
Confidence 468999999865 578999999865432 23456667766442 68999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCc----c-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
....+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+|++|||+++......... +
T Consensus 95 ~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a 171 (321)
T 1tki_A 95 SAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYA 171 (321)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcC
Confidence 5567999999999999999999999 568999999999999997 7899999999998765432110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... .-.+.+........ .+++. ...+....+
T Consensus 172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~--~~~~~----------~~~~~s~~~ 234 (321)
T 1tki_A 172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-----TNQQIIENIMNAEY--TFDEE----------AFKEISIEA 234 (321)
T ss_dssp HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCC--CCCHH----------HHTTSCHHH
T ss_pred cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-----CHHHHHHHHHcCCC--CCChh----------hhccCCHHH
Confidence 00113378888 6 888887531 11111111110000 00000 011123456
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++|||+.|+++
T Consensus 235 ~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 235 MDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 78889999999999999999986
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=200.08 Aligned_cols=202 Identities=20% Similarity=0.306 Sum_probs=141.9
Q ss_pred CCcCcceEEEecC----CceeeeEEechhh-hhhhhhHHHHHHHHH-------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|.+.... ......|..|+..++ .+||||+++|+|.++
T Consensus 401 G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~ 480 (656)
T 2j0j_A 401 GQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 480 (656)
T ss_dssp CSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHH
T ss_pred CCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEEEcCCCCcHHHH
Confidence 4689999998743 4578999876432 223355666776644 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ------ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~------ 535 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ ...
T Consensus 481 l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~ 557 (656)
T 2j0j_A 481 LQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 557 (656)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGG
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcc
Confidence 9765556899999999999999999999 568999999999999999999999999999876543211 000
Q ss_pred ---------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ---------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | | |+.|.... ....+...+...... ..+..+
T Consensus 558 y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~--~~~~~~~~i~~~~~~------------------~~~~~~ 617 (656)
T 2j0j_A 558 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGERL------------------PMPPNC 617 (656)
T ss_dssp GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHHHHHHTCCC------------------CCCTTC
T ss_pred eeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHcCCCC------------------CCCccc
Confidence 0112367888 6 4 77666431 111122222111000 011122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+|++.+|++||++.||+++|+.+.+.
T Consensus 618 ~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 618 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999988654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=166.49 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=129.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCC-ccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIP-SSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.++++++.++. +|..+. ..+++|+|++|.+++..| ..|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 56777778764 677665 457899999999998755 45889999999999999999888889999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI 214 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 214 (639)
++++..+..|.++++|++|+|++|.|+ +..|..|..+++|+.|+|++|.+++..|..|..++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRIT------------------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCC------------------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCC------------------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 999888888888777776666666554 56677888899999999999999999899999999
Q ss_pred CCCEEEccCCCCCCC
Q 041082 215 NLKRLNLYDNYLTSS 229 (639)
Q Consensus 215 ~L~~L~Ls~N~l~~~ 229 (639)
+|+.|++++|.+...
T Consensus 154 ~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 154 SLSTLNLLANPFNCN 168 (220)
T ss_dssp TCCEEECCSCCEECS
T ss_pred CCCEEEecCcCCcCC
Confidence 999999999988764
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=186.01 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=134.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|++.... ......+..|+..++. +|+||+. |++.+.
T Consensus 65 G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~ 143 (348)
T 1u5q_A 65 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDL 143 (348)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHH
T ss_pred CCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHH
Confidence 56899999985 578999999986543 2233456677766432 6899997 688887
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-c------c-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-F------T- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~------~- 534 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ . +
T Consensus 144 l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~gt~~y~aPE 220 (348)
T 1u5q_A 144 LEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPE 220 (348)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCCCcccCCcceeCHh
Confidence 7654556899999999999999999999 567999999999999999999999999999876543221 0 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|.... .-.+.+....... .+.... ......
T Consensus 221 ~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~-----~~~~~~~~~~~~~-----~~~~~~---------~~~~~~ 281 (348)
T 1u5q_A 221 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNE-----SPALQS---------GHWSEY 281 (348)
T ss_dssp HHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSC-----CCCCCC---------TTSCHH
T ss_pred hhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHhcC-----CCCCCC---------CCCCHH
Confidence 01123367888 6 787776431 1111111111110 010100 011224
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|++.+|++|||+.++++
T Consensus 282 l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 282 FRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcccChhhCcCHHHHhh
Confidence 567888999999999999999985
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=189.34 Aligned_cols=197 Identities=17% Similarity=0.270 Sum_probs=138.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .|..+|+|.+..........+..|+.+++ .+|+||+++|+|.+++..
T Consensus 62 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~ 141 (387)
T 1kob_A 62 GAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAA 141 (387)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTC
T ss_pred CCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHh
Confidence 468999999864 57899999987654444456677777754 268999999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCc----c-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSF----T----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~----~----- 534 (639)
....+++.....++.+++.||+||| ..+|+||||||+||+++. ++.+||+|||+|+......... +
T Consensus 142 ~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~a 218 (387)
T 1kob_A 142 EDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA 218 (387)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccC
Confidence 5557899999999999999999999 568999999999999974 5779999999998765432110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ........+.... . .+++... ......+
T Consensus 219 PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~--~~~~~~~~i~~~~-~----~~~~~~~----------~~~s~~~ 281 (387)
T 1kob_A 219 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE--DDLETLQNVKRCD-W----EFDEDAF----------SSVSPEA 281 (387)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS--SHHHHHHHHHHCC-C----CCCSSTT----------TTSCHHH
T ss_pred chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC--CHHHHHHHHHhCC-C----CCCcccc----------ccCCHHH
Confidence 00122368888 6 888887531 1111111111100 0 0111110 1112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++..|++.+|++|||+.|+++
T Consensus 282 ~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 282 KDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhh
Confidence 77889999999999999999986
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=182.41 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=148.1
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhh-----------------hhHHHHHHHHH--------------------hh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAF-----------------KSFDVACDMMK--------------------KL 449 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~-----------------~~f~~e~~~~~--------------------~L 449 (639)
.++|.||++.. ++..+|+|.+........ ..+..|+..++ .+
T Consensus 42 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 120 (348)
T 2pml_X 42 GKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYI 120 (348)
T ss_dssp CSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEE
T ss_pred CCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEE
Confidence 46899999998 899999999876543211 56777777743 26
Q ss_pred hhhcCCCCCchhc------cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 450 VLEYMPHGSLEKC------LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 450 v~ey~~~gsL~~~------l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
|+||+++|+|.++ +... ...+++..+..++.+++.||+|||. ..+|+||||||+||+++.++.+||+|||+
T Consensus 121 v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~--~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 198 (348)
T 2pml_X 121 IYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGE 198 (348)
T ss_dssp EEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH--TSCEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred EEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc--cCCEeecCCChHhEEEcCCCcEEEecccc
Confidence 8999999999998 5542 4568999999999999999999994 27899999999999999999999999999
Q ss_pred cccccccCCC---------ccc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCcc
Q 041082 523 AKLLLKEDQS---------FTQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISVM 575 (639)
Q Consensus 523 a~~~~~~~~~---------~~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~~ 575 (639)
++........ .+. ...+.++||| | ||+.|...... ...+.+.+.... +....
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~i~~~~~~~~~~~~ 277 (348)
T 2pml_X 199 SEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-LVELFNNIRTKNIEYPLDRN 277 (348)
T ss_dssp CEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-SHHHHHHHTSCCCCCCCSSS
T ss_pred ccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHhccCcCCccchh
Confidence 9875432110 010 0112278999 6 88888764211 122222222111 10000
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH----------HHHHhHHHHHHhhhc
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT----------RLLKIRDLLLKNVKR 638 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~----------~l~~~~~~~~~~~~~ 638 (639)
....+..... ...........+.+++.+|++.+|++||++.|+++ .++++...+.+++|+
T Consensus 278 ~~~~~~~~~~---~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T 2pml_X 278 HFLYPLTNKK---STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNIEDLREFSKELYKKRKK 347 (348)
T ss_dssp SSTTTTCC-----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHHHHHHHHHHHHHHTTC
T ss_pred hhhccccccc---cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCCHHHHHHHHHHHHHHhhc
Confidence 0000000000 00000122345678889999999999999999995 355555555565554
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=185.74 Aligned_cols=201 Identities=20% Similarity=0.349 Sum_probs=139.3
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++. +|+||+++|+|
T Consensus 36 G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 115 (322)
T 1p4o_A 36 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 115 (322)
T ss_dssp CSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred CCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcH
Confidence 468999998764 367899999864332 223456677776442 68999999999
Q ss_pred hhccccC---------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYSS---------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~---------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.+++... ...+++..+.+++.++++||+||| ..+|+||||||.||+++.++.+|++|||+++......
T Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~ 192 (322)
T 1p4o_A 116 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 192 (322)
T ss_dssp HHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGG
T ss_pred HHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeEEECcCcccccccccc
Confidence 9988641 135689999999999999999999 5689999999999999999999999999998664332
Q ss_pred CCc--c---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSF--T---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~--~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
... . ....+.++||| | | |+.|.... ...+............
T Consensus 193 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-----~~~~~~~~~~~~~~~~------- 260 (322)
T 1p4o_A 193 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-----SNEQVLRFVMEGGLLD------- 260 (322)
T ss_dssp CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CHHHHHHHHHTTCCCC-------
T ss_pred ccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC-----CHHHHHHHHHcCCcCC-------
Confidence 110 0 00122367888 6 5 66665421 1112211111111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+..+...+.+++.+|++.+|++||++.|+++.|+++..
T Consensus 261 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 261 --------KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred --------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 011223356778899999999999999999999987744
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=192.16 Aligned_cols=145 Identities=28% Similarity=0.451 Sum_probs=78.6
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
+..|++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. | .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence 3456667777777777663 33 46667777777777777665544 66677777777777776642 2 466666666
Q ss_pred EEecCCCCCCCCC----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCC
Q 041082 152 DLDLSHNNLTDVQ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYL 226 (639)
Q Consensus 152 ~L~Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 226 (639)
.|+|++|.|+++. +++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 6666666655431 33444444444444332 233344444444444444444333 44444444444444443
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=181.87 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=138.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|.+.... ......+..|+..++ .+|+||+++|+|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~ 101 (294)
T 4eqm_A 22 GGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEY 101 (294)
T ss_dssp ETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHH
Confidence 46889999985 467899999885432 223456667776643 278999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc------c--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------T-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------~-- 534 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 102 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~ 177 (294)
T 4eqm_A 102 IESH-GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQ 177 (294)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCS
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCcc
Confidence 8643 35899999999999999999999 5679999999999999999999999999998764332110 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | ||+.|.... .-.+............. ... ......
T Consensus 178 y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~~-~~~----------~~~~~~ 241 (294)
T 4eqm_A 178 YFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE-----TAVSIAIKHIQDSVPNV-TTD----------VRKDIP 241 (294)
T ss_dssp SCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS-----CHHHHHHHHHSSCCCCH-HHH----------SCTTSC
T ss_pred ccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhhccCCCc-chh----------cccCCC
Confidence 00112367888 6 777776421 11111111111110000 000 011123
Q ss_pred HHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhH
Q 041082 598 SFVFNLAMECTAESPKQRI-NAKESVTRLLKIR 629 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP-~m~~v~~~l~~~~ 629 (639)
..+.+++.+|++.+|++|| ++.++.+.|+.+.
T Consensus 242 ~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~ 274 (294)
T 4eqm_A 242 QSLSNVILRATEKDKANRYKTIQEMKDDLSSVL 274 (294)
T ss_dssp HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence 4567788999999999999 8999999988764
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=176.27 Aligned_cols=195 Identities=20% Similarity=0.242 Sum_probs=137.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... ++..+|+|.++.... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 97 (276)
T 2yex_A 18 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 97 (276)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB
T ss_pred CCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHh
Confidence 468899999875 688999999875432 23345666666643 27899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------ 532 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------ 532 (639)
. ...+++.....++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 98 ~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y 173 (276)
T 2yex_A 98 P-DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 173 (276)
T ss_dssp T-TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGG
T ss_pred h-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCc
Confidence 4 345899999999999999999999 568999999999999999999999999999765322100
Q ss_pred -ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 -FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 -~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|..........+..|....... .+ .....
T Consensus 174 ~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~------~~------------~~~~~ 235 (276)
T 2yex_A 174 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------NP------------WKKID 235 (276)
T ss_dssp CCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTS------TT------------GGGSC
T ss_pred cChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccccc------Cc------------hhhcC
Confidence 000 0113368888 6 88888764322222333333211100 00 01112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.++..+|++.+|++|||+.||++
T Consensus 236 ~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 236 SAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 24567889999999999999999975
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-19 Score=181.93 Aligned_cols=202 Identities=27% Similarity=0.432 Sum_probs=138.3
Q ss_pred CCcCcceEEEec-CCce--eeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMK--VAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~--vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++.. +++|.+.... ......+..|+..++ .+|+||+++|+|.+
T Consensus 36 G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~ 115 (327)
T 1fvr_A 36 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLD 115 (327)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred CCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHH
Confidence 468899999864 4543 4888875422 223445666766643 26899999999999
Q ss_pred ccccCC---------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSN---------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~---------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++.... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~ 192 (327)
T 1fvr_A 116 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 192 (327)
T ss_dssp HHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESS
T ss_pred HHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeEEEcccCcCccc
Confidence 886532 36899999999999999999999 668999999999999999999999999999754
Q ss_pred cccCCC----cc------c----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 527 LKEDQS----FT------Q----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 527 ~~~~~~----~~------~----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
...... .+ . ...+.++||| | | |+.|... ....+......... .+.
T Consensus 193 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~-----~~~~~~~~~~~~~~-----~~~- 261 (327)
T 1fvr_A 193 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----MTCAELYEKLPQGY-----RLE- 261 (327)
T ss_dssp CEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT-----CCHHHHHHHGGGTC-----CCC-
T ss_pred cccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC-----CcHHHHHHHhhcCC-----CCC-
Confidence 322111 00 0 0123378898 6 6 8877653 12222221111110 000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+..+...+.+++.+|++.+|++||++.|+++.|.++.+.
T Consensus 262 ---------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 262 ---------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp ---------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ---------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 0111223567888999999999999999999999987654
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=182.42 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=137.1
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 41 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 120 (327)
T 2yfx_A 41 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDL 120 (327)
T ss_dssp -CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEH
T ss_pred CCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcH
Confidence 468999998743 46789999985332 223345666666543 278999999999
Q ss_pred hhccccCC------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccC
Q 041082 460 EKCLYSSN------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~~~------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~ 530 (639)
.+++.... ..+++..+..++.+++.||+||| ..+|+||||||+||+++. +..+|++|||+++......
T Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~ 197 (327)
T 2yfx_A 121 KSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAS 197 (327)
T ss_dssp HHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC--
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECcccccccccccc
Confidence 99987532 35899999999999999999999 568999999999999984 4569999999997653322
Q ss_pred CC--cc---------------ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QS--FT---------------QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~--~~---------------~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.. .. ....+.++||| | | |+.|.... ....+.+++.......
T Consensus 198 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~~---------- 265 (327)
T 2yfx_A 198 YYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--SNQEVLEFVTSGGRMD---------- 265 (327)
T ss_dssp ----CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCCCC----------
T ss_pred ccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc--CHHHHHHHHhcCCCCC----------
Confidence 11 00 01123378888 6 6 77766431 1112222222111000
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.+..+...+.+++.+|++.+|++||++.||+++|+.+...
T Consensus 266 --------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 266 --------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 0111223567888999999999999999999999988653
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-20 Score=192.85 Aligned_cols=198 Identities=16% Similarity=0.062 Sum_probs=130.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechh---hhhhhhhHHHHHHH---------------H---------------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQ---YERAFKSFDVACDM---------------M--------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~---~~~~~~~f~~e~~~---------------~--------------------- 446 (639)
.++|.||++.. .+|..+|||++... .......+..|+.+ .
T Consensus 84 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T 3byv_A 84 EDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 163 (377)
T ss_dssp ETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCcccccc
Confidence 46899999986 56899999998632 22223445555522 1
Q ss_pred -----------HhhhhhcCCCCCchhccccC------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee
Q 041082 447 -----------KKLVLEYMPHGSLEKCLYSS------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL 509 (639)
Q Consensus 447 -----------~~Lv~ey~~~gsL~~~l~~~------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill 509 (639)
..+||||+ +|+|.+++... ...++|..+.+|+.++++||+||| ..+|+||||||+||++
T Consensus 164 ~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll 239 (377)
T 3byv_A 164 RLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVL 239 (377)
T ss_dssp ------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred ccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEE
Confidence 23677888 68999888641 234557889999999999999999 5679999999999999
Q ss_pred cCCcceeeccccccccccccCCCc-------cc----c-----------ccccccccc--c-------CCCCCCCccCCC
Q 041082 510 GNNMVAHLSDFGMAKLLLKEDQSF-------TQ----N-----------TNTCHHRIY--G-------TRRNPQMNFFSG 558 (639)
Q Consensus 510 ~~~~~~~i~dfgla~~~~~~~~~~-------~~----~-----------~~~~~~dvy--G-------tg~~p~~~~~~~ 558 (639)
+.++.+||+|||+|+......... +. . ..+.++||| | ||+.|......
T Consensus 240 ~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~- 318 (377)
T 3byv_A 240 DQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAA- 318 (377)
T ss_dssp CTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred cCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccc-
Confidence 999999999999998643321100 00 0 123356676 5 66665432100
Q ss_pred ccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHhHHHHH
Q 041082 559 EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT--RLLKIRDLLL 633 (639)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~--~l~~~~~~~~ 633 (639)
.+........ .......+.+++.+|++.+|++||++.|+++ .+..+++...
T Consensus 319 ----------------~~~~~~~~~~--------~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~ 371 (377)
T 3byv_A 319 ----------------LGGSEWIFRS--------CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371 (377)
T ss_dssp -----------------CCSGGGGSS--------CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHHH
T ss_pred ----------------ccchhhhhhh--------ccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHHH
Confidence 0000000000 0111234677889999999999999999996 5555555543
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=187.35 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=132.0
Q ss_pred CCcCcceEEEec----CCceeeeEEechhhhhhh-----------hhHHHHHHHH------------------------H
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQYERAF-----------KSFDVACDMM------------------------K 447 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~~~~~-----------~~f~~e~~~~------------------------~ 447 (639)
.++|.||++... .+..+|+|.......... ..+..++... .
T Consensus 48 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~ 127 (345)
T 2v62_A 48 GGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYR 127 (345)
T ss_dssp ----CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEE
T ss_pred cCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEE
Confidence 468999999875 568899998865432111 1122222221 1
Q ss_pred hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc--ceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--VAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--~~~i~dfgla~~ 525 (639)
.+|+||+ +|+|.+++.... .+++..+.+|+.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+|+.
T Consensus 128 ~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~ 202 (345)
T 2v62_A 128 FMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYR 202 (345)
T ss_dssp EEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTSEEECCCTTCEE
T ss_pred EEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCcEEEEeCCCcee
Confidence 3789999 899999987533 6899999999999999999999 56899999999999999877 999999999987
Q ss_pred ccccCCCc-------cc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 526 LLKEDQSF-------TQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 526 ~~~~~~~~-------~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+....... .. ...+.++||| | ||+.|..........+........+. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-~ 281 (345)
T 2v62_A 203 YCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDE-L 281 (345)
T ss_dssp SSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHT-T
T ss_pred cccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhccc-c
Confidence 64322100 00 0112367888 6 77777653222211111111111000 0
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+.+..... ...+...+.+++.+|++.+|++||++.+|++.|+.+
T Consensus 282 ~~~~~~~~~---------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 282 PQSVLKWAP---------SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp THHHHHHSC---------TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred cHHHHhhcc---------ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 000000000 002234677888999999999999999999999865
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=185.56 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++....+..+|+|++.... ......+..|+..++. +||| +.+|+|.++
T Consensus 20 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~ 98 (343)
T 3dbq_A 20 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 98 (343)
T ss_dssp CSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHH
T ss_pred CCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-CCCCCHHHH
Confidence 56899999998889999999986543 2233556666666432 5677 457799888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+.. ...+++..+..|+.++++||+||| ..+|+||||||+||+++ ++.+||+|||+++........
T Consensus 99 l~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 173 (343)
T 3dbq_A 99 LKK-KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 173 (343)
T ss_dssp HHH-SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCC
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCc
Confidence 875 346899999999999999999999 56799999999999997 678999999999876433211
Q ss_pred ---ccc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 533 ---FTQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 533 ---~~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|..+.... ....... +++.....
T Consensus 174 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~----~~~~~~~--------~~~~~~~~ 241 (343)
T 3dbq_A 174 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ----ISKLHAI--------IDPNHEIE 241 (343)
T ss_dssp SSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH----HHHHHHH--------HCTTSCCC
T ss_pred CcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH----HHHHHHH--------hcCCcccC
Confidence 000 0112357888 6 777776532111 1111111 11111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +..+...+.+++..|++.+|++||||.|+++.
T Consensus 242 ~------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 242 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 0 00111246678889999999999999999853
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-19 Score=178.60 Aligned_cols=193 Identities=25% Similarity=0.353 Sum_probs=135.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++++|.+++.
T Consensus 33 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~ 112 (303)
T 3a7i_A 33 GSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE 112 (303)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT
T ss_pred cCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh
Confidence 46899999975 4688999999875542 23456666766643 26899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---------- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---------- 534 (639)
. ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 113 ~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a 187 (303)
T 3a7i_A 113 P--GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 187 (303)
T ss_dssp T--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCC
T ss_pred c--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccC
Confidence 4 45899999999999999999999 56899999999999999999999999999987654321100
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ........+....+ +.+. ......+
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~--------~~~~----------~~~~~~l 247 (303)
T 3a7i_A 188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL--HPMKVLFLIPKNNP--------PTLE----------GNYSKPL 247 (303)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCC--------CCCC----------SSCCHHH
T ss_pred HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc--CHHHHHHHhhcCCC--------CCCc----------cccCHHH
Confidence 01122367887 5 777776431 11111111111100 0000 0112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++..|++.+|++|||+.||++.
T Consensus 248 ~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 248 KEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHHHHcCCChhhCcCHHHHhhC
Confidence 778899999999999999999864
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-20 Score=192.99 Aligned_cols=209 Identities=14% Similarity=0.096 Sum_probs=134.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHH---HHHH---------------------------------
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVA---CDMM--------------------------------- 446 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e---~~~~--------------------------------- 446 (639)
.++|.||++... ++..+|+|++..... .....+..| +..+
T Consensus 73 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~ 152 (371)
T 3q60_A 73 GDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLS 152 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCS
T ss_pred CCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeecc
Confidence 568999999864 789999999876432 112233333 1111
Q ss_pred ----------HhhhhhcCCCCCchhccccCCccCCHHHH------HHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec
Q 041082 447 ----------KKLVLEYMPHGSLEKCLYSSNYILDIFQR------LNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510 (639)
Q Consensus 447 ----------~~Lv~ey~~~gsL~~~l~~~~~~l~~~~~------~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~ 510 (639)
..+||||++ |+|.+++......+.+..+ ..++.++++||+||| ..+|+||||||+|||++
T Consensus 153 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll~ 228 (371)
T 3q60_A 153 PGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIM 228 (371)
T ss_dssp CC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEC
T ss_pred CCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCccCcCCHHHEEEC
Confidence 257889999 8999998753334566666 889999999999999 56799999999999999
Q ss_pred CCcceeeccccccccccccCCC--cc------c------cccccccccc--c-------CCCCCCCccCCCccchHHHHH
Q 041082 511 NNMVAHLSDFGMAKLLLKEDQS--FT------Q------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN 567 (639)
Q Consensus 511 ~~~~~~i~dfgla~~~~~~~~~--~~------~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~ 567 (639)
.++.+||+|||+|+........ .+ . ...+.++||| | ||+.|........... |..
T Consensus 229 ~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~--~~~ 306 (371)
T 3q60_A 229 PDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGS--WKR 306 (371)
T ss_dssp TTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTC--CCB
T ss_pred CCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccc--hhh
Confidence 9999999999999876543211 00 0 1123478888 6 7887776432111100 000
Q ss_pred hhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHhHHH
Q 041082 568 DLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT--RLLKIRDL 631 (639)
Q Consensus 568 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~--~l~~~~~~ 631 (639)
.. ........... .........+.+++.+|++.+|++|||+.|+++ .+.++.+.
T Consensus 307 ~~----~~~~~~~~~~~------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~ 362 (371)
T 3q60_A 307 PS----LRVPGTDSLAF------GSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNE 362 (371)
T ss_dssp CC----TTSCCCCSCCC------TTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHH
T ss_pred hh----hhhccccccch------hhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHH
Confidence 00 00000000000 001122345677888999999999999999985 34444443
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-19 Score=179.53 Aligned_cols=196 Identities=22% Similarity=0.302 Sum_probs=134.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+++|.+..........+..|+..++. +|+||+++|+|.+++..
T Consensus 30 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~ 109 (302)
T 2j7t_A 30 GAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLE 109 (302)
T ss_dssp STTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHh
Confidence 568999999876 478999999876655555667777766442 68999999999988865
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC-----------CCcc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED-----------QSFT 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~-----------~~~~ 534 (639)
....+++..+..++.++++||+||| ..+++||||||+||+++.++.+||+|||++....... +..+
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP 186 (302)
T 2j7t_A 110 LDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAP 186 (302)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCC
Confidence 4556899999999999999999999 5689999999999999999999999999975432110 0000
Q ss_pred ---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 ---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
....+.++||| | ||+.|.... .-.+.............. .+...
T Consensus 187 E~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~~~ 248 (302)
T 2j7t_A 187 EVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPPTLL-------------TPSKW 248 (302)
T ss_dssp HHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCCS-------------SGGGS
T ss_pred eeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHHhccCCcccC-------------Ccccc
Confidence 01123367888 6 777776531 111111111000000000 01112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++|||+.|+++
T Consensus 249 ~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 249 SVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp CHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 235677889999999999999999985
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=173.01 Aligned_cols=164 Identities=25% Similarity=0.382 Sum_probs=108.3
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|+++++.++.. + .+..+++|++|+|++|.+++..| +..+++|+.|++++|.+.+ + ..+..+++|++|+|+
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 466777777777643 3 36677777777777777775433 7777777777777777765 2 237777777777777
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+|++++. ..+..+++|++|++++|.++++ .+++|+.|++++|++++..| +..+++|+.|++++|.+++. |
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~- 194 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R- 194 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-
Confidence 7777653 3566777777777777777654 25566666666666665444 55666666666666666554 2
Q ss_pred ccCCCCCCCEEEccCCCCCC
Q 041082 209 TFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~N~l~~ 228 (639)
.+..+++|+.|++++|.++.
T Consensus 195 ~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEECcCCcccC
Confidence 25666666666666666554
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-19 Score=179.93 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=133.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. .++..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 112 (295)
T 2clq_A 33 GTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRS 112 (295)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHH
T ss_pred cCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHh
Confidence 46899999985 467899999987655444566777776643 268999999999998875
Q ss_pred CC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCC-----c----
Q 041082 466 SN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQS-----F---- 533 (639)
Q Consensus 466 ~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~-----~---- 533 (639)
.. ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+|||+++........ .
T Consensus 113 ~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y 189 (295)
T 2clq_A 113 KWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQY 189 (295)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGG
T ss_pred hccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccc
Confidence 32 34678888999999999999999 568999999999999997 899999999999866432110 0
Q ss_pred --cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 534 --TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 534 --~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
+. ...+.++||| | ||+.|....-...... +...... ..+.+ +...
T Consensus 190 ~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~------~~~~~----------~~~~ 251 (295)
T 2clq_A 190 MAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM--FKVGMFK------VHPEI----------PESM 251 (295)
T ss_dssp CCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH--HHHHHHC------CCCCC----------CTTS
T ss_pred cChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH--Hhhcccc------ccccc----------cccC
Confidence 00 0123467888 6 7877764321110000 0000000 00111 1112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++||++.|+++
T Consensus 252 ~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 252 SAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp CHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 235667889999999999999999985
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=187.61 Aligned_cols=192 Identities=22% Similarity=0.274 Sum_probs=137.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 27 G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~ 106 (476)
T 2y94_A 27 GTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDY 106 (476)
T ss_dssp CSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHH
Confidence 468999999865 689999999875432 22345667777644 268999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.........+
T Consensus 107 l~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~ 182 (476)
T 2y94_A 107 ICK-NGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 182 (476)
T ss_dssp TTS-SSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTC
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeE
Confidence 874 345899999999999999999999 67899999999999999999999999999987654321100
Q ss_pred --c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 --Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 --~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++||| | ||+.|.++. ...+.......... ..| .....
T Consensus 183 aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~~---~~p-------------~~~s~ 241 (476)
T 2y94_A 183 APEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD-----HVPTLFKKICDGIF---YTP-------------QYLNP 241 (476)
T ss_dssp CHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SSHHHHHHHHTTCC---CCC-------------TTCCH
T ss_pred ChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCCc---CCC-------------ccCCH
Confidence 0 0112367888 6 788777532 11122111111100 000 01112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.||++
T Consensus 242 ~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 242 SVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHh
Confidence 4667888999999999999999986
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=181.87 Aligned_cols=169 Identities=27% Similarity=0.229 Sum_probs=123.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCcccc-CCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.+++++++++. +|..+. +.+++|+|++|.|++..+..|. ++++|+.|+|++|++.+..|..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46667777764 676665 4689999999999987777777 8999999999999999888888999999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccc---cCCCCCcEEEcccCCCccc
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFI---FNASKLSILELQKNSFFDL 205 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~ 205 (639)
+|++..+..|.++++|++|+|++|.|+.+ .+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++.++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99988777888888888888888887753 24566666666666654433333 3456666666666666655
Q ss_pred CccccCCCCC--CCEEEccCCCCC
Q 041082 206 IPNTFGNLIN--LKRLNLYDNYLT 227 (639)
Q Consensus 206 ~p~~~~~l~~--L~~L~Ls~N~l~ 227 (639)
.+..|..++. ++.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555555554 255666666554
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-19 Score=178.59 Aligned_cols=189 Identities=20% Similarity=0.169 Sum_probs=130.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH-------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM-------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|.+... ..+..|+..+ ..+|+||+++|+|.
T Consensus 29 G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~ 103 (299)
T 3m2w_A 29 GINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELF 103 (299)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHH
Confidence 46889999986 46789999998632 2233333331 13789999999999
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCcccc
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFTQN 536 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~~~~ 536 (639)
+++... ...+++..+..++.+++.||+||| ..+|+||||||+||+++. ++.+||+|||+|+......
T Consensus 104 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~------ 174 (299)
T 3m2w_A 104 SRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEK------ 174 (299)
T ss_dssp HHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCG------
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccccccccccc------
Confidence 998753 346899999999999999999999 667999999999999998 7889999999998764322
Q ss_pred ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhc
Q 041082 537 TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607 (639)
Q Consensus 537 ~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C 607 (639)
.+.++||| | ||+.|........ .. ..... .+....... ...........+.+++.+|
T Consensus 175 -~~~~~DiwslG~il~el~tg~~pf~~~~~~~-----~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~li~~~ 240 (299)
T 3m2w_A 175 -YDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-----IS-PGMKT---RIRMGQYEF----PNPEWSEVSEEVKMLIRNL 240 (299)
T ss_dssp -GGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCC---SSCTTCCSS----CHHHHTTSCHHHHHHHHHH
T ss_pred -CCchhhHHHHHHHHHHHHHCCCCCCCCcchh-----hh-HHHHH---HHhhccccC----CchhcccCCHHHHHHHHHH
Confidence 33478999 6 8888875321100 00 00000 000000000 0000012234577888999
Q ss_pred cCCCCCCCCCHHHHHH
Q 041082 608 TAESPKQRINAKESVT 623 (639)
Q Consensus 608 ~~~~p~~RP~m~~v~~ 623 (639)
++.+|++|||+.|+++
T Consensus 241 l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 241 LKTEPTQRMTITEFMN 256 (299)
T ss_dssp TCSSTTTSCCHHHHHT
T ss_pred cccChhhCCCHHHHhc
Confidence 9999999999999986
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-19 Score=178.11 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=131.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..|..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 22 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (278)
T 3cok_A 22 GSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRY 101 (278)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHH
T ss_pred CCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHH
Confidence 46889999986 5688999999865432 22345666666643 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++.........
T Consensus 102 l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y 178 (278)
T 3cok_A 102 LKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNY 178 (278)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---------------
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCc
Confidence 8765567899999999999999999999 5689999999999999999999999999998654221100
Q ss_pred --cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|...... .+.+........ ..+.....
T Consensus 179 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----------------~~~~~~~~~~~~----~~~~~~~~ 237 (278)
T 3cok_A 179 ISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV-----------------KNTLNKVVLADY----EMPSFLSI 237 (278)
T ss_dssp -------------CTHHHHHHHHHHHHHHSSCSSCCCSC-----------------C-----CCSSCC----CCCTTSCH
T ss_pred CCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH-----------------HHHHHHHhhccc----CCccccCH
Confidence 00 0112366777 5 66666542110 000000000000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++||++.+|++
T Consensus 238 ~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 238 EAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHcccCHhhCCCHHHHhc
Confidence 5678889999999999999999986
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-20 Score=206.11 Aligned_cols=188 Identities=23% Similarity=0.227 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCCCCcccccCCCC-CCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcC
Q 041082 10 LSFQVFVLKGHVTDDPTNFLAKNWNT-SSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWF 88 (639)
Q Consensus 10 ~~~~ll~~k~~~~~~~~~~l~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l 88 (639)
+.++|+++...........-.. |.. .+..+.|.+++++. .+++.|+|.++.+... +.. .|+.++|+.|.|
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i 203 (727)
T 4b8c_D 133 TKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSI 203 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred chhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhh-----HhhcCccCcccc
Confidence 3456666665431111111112 533 34566798888875 5789999999888753 332 345556666655
Q ss_pred Cc---------cCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 89 SG---------SIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 89 ~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
.+ ..|..|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 43 23444444444555555544444 33444444444444444444444 344444444333333333333
Q ss_pred CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCC
Q 041082 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228 (639)
Q Consensus 160 l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (639)
| + .+|..++.+++|+.|+|++|.+. .+|..|+.+++|++|+|++|.+++
T Consensus 282 l------------------~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 282 L------------------T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp C------------------S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred C------------------C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 2 2 33444555555555555555554 234445555555555555555543
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-19 Score=184.42 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=104.2
Q ss_pred hhhhhcCCCCCchhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 448 KLVLEYMPHGSLEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 448 ~Lv~ey~~~gsL~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+|+||+++|+|.+++.... ...++..+.+++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.
T Consensus 137 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~ 213 (332)
T 3qd2_B 137 YIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTA 213 (332)
T ss_dssp EEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccc
Confidence 47889999999999987632 34678888999999999999999 56899999999999999999999999999987
Q ss_pred ccccCCCcc------------cccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCC-cceeeeccccccccc
Q 041082 526 LLKEDQSFT------------QNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDK 588 (639)
Q Consensus 526 ~~~~~~~~~------------~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 588 (639)
......... ...++. ...++ |....+..|+|+-|..+.+.+....+.. ..+.........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~--- 290 (332)
T 3qd2_B 214 MDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLK--- 290 (332)
T ss_dssp CSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTC---
T ss_pred cccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccC---
Confidence 754421100 000010 00000 1111222233344444443332111110 000000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...........+.+++.+|++.+|++||++.|+++
T Consensus 291 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 291 FPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp CCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred CCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 00112334455678999999999999999999986
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-19 Score=185.42 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=129.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++....+..+|||++.... ......+..|+..++. +||| +.+|+|.++
T Consensus 67 G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~ 145 (390)
T 2zmd_A 67 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 145 (390)
T ss_dssp CSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHH
Confidence 56899999988889999999986543 2334556667666432 5677 457789888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~- 534 (639)
+... ..+++..+..|+.++++||+||| ..+|+||||||.||+++ ++.+||+|||+++.+...... .+
T Consensus 146 l~~~-~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 220 (390)
T 2zmd_A 146 LKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAV 220 (390)
T ss_dssp HHHC-SSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCC
Confidence 8653 36889899999999999999999 67899999999999995 588999999999876433210 00
Q ss_pred -----c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 535 -----Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 535 -----~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
. ...+.++||| | ||+.|..... .-...+... +++.....
T Consensus 221 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~----~~~~~~~~~--------~~~~~~~~ 288 (390)
T 2zmd_A 221 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII----NQISKLHAI--------IDPNHEIE 288 (390)
T ss_dssp GGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC----CHHHHHHHH--------HCTTSCCC
T ss_pred CccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh----HHHHHHHHH--------hCccccCC
Confidence 0 0122357887 6 7777765321 111111111 11111000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +......+.+++.+|++.+|++||++.||++.
T Consensus 289 ~------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 289 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------CccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 0 00012246678889999999999999999853
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=181.71 Aligned_cols=210 Identities=17% Similarity=0.164 Sum_probs=131.1
Q ss_pred CCcCcceEEE------ecCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKAR------IQDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~------l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~g 457 (639)
.++|.||++. ...+..+|+|++..... ..+..+...++ .+||||+++|
T Consensus 76 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g 152 (365)
T 3e7e_A 76 GAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYG 152 (365)
T ss_dssp CSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSC
T ss_pred cCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCC
Confidence 5689999993 55688999999875433 23444443321 3789999999
Q ss_pred Cchhcccc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----------Ccceeeccccc
Q 041082 458 SLEKCLYS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-----------NMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-----------~~~~~i~dfgl 522 (639)
+|.+++.. ....++|..+..|+.++++||+||| ..+|+||||||+|||++. ++.+||+|||+
T Consensus 153 ~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~ 229 (365)
T 3e7e_A 153 TLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQ 229 (365)
T ss_dssp BHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTT
T ss_pred cHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCccccccccCCEEEeeCch
Confidence 99999864 3456999999999999999999999 678999999999999998 89999999999
Q ss_pred cccccccCCC--cccccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCc----ceeeeccccccccccccc
Q 041082 523 AKLLLKEDQS--FTQNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 523 a~~~~~~~~~--~~~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~d~~l~~~~~~~~~~ 592 (639)
|+.+...... .....++. ...++ |....+..|+|+-|..+.+.+....|... ...++...... .
T Consensus 230 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~-----~- 303 (365)
T 3e7e_A 230 SIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRL-----P- 303 (365)
T ss_dssp CEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTC-----S-
T ss_pred hhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeechhcccc-----C-
Confidence 9765421110 00001110 00000 11112222334444444444444333210 01111111110 1
Q ss_pred hHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHHHhHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQR-INAKESVTRLLKIRDL 631 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~R-P~m~~v~~~l~~~~~~ 631 (639)
..+ .+-++...|++.+|.+| |++.++.+.|+++.+.
T Consensus 304 ~~~---~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 304 HLD---MWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp SHH---HHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cHH---HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 122 33456668888999888 6788888888877543
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=174.25 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=131.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+...... ....+..|++.++ .+|+||+++|+|.+.+.
T Consensus 33 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 112 (285)
T 3is5_A 33 GAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIV 112 (285)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHH
T ss_pred CCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHH
Confidence 568999999864 5789999998765422 3456677777644 26899999999998875
Q ss_pred c---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCc----c
Q 041082 465 S---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSF----T 534 (639)
Q Consensus 465 ~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~----~ 534 (639)
. ....+++..+..|+.++++||+||| ..+|+||||||+||+++ .++.+||+|||+++......... +
T Consensus 113 ~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t 189 (285)
T 3is5_A 113 SAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGT 189 (285)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTT
T ss_pred hhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccc
Confidence 4 2356899999999999999999999 56899999999999994 46889999999998765332110 0
Q ss_pred c---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCCcceeeeccccccccccccchHH
Q 041082 535 Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
. ...+.++||| | ||+.|.... ...+...... ....... .. . .
T Consensus 190 ~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~~~-~~--~-----------~ 250 (285)
T 3is5_A 190 ALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGT-----SLEEVQQKATYKEPNYAV-EC--R-----------P 250 (285)
T ss_dssp GGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCCCC-----C-----------C
T ss_pred cCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCC-----CHHHHHhhhccCCccccc-cc--C-----------c
Confidence 0 0122378888 6 788876531 1211111110 0000000 00 0 0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++||++.||++
T Consensus 251 ~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 251 LTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1124567888999999999999999985
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=183.59 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=96.7
Q ss_pred CcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 408 GFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 408 g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
++|.||++... .+..+|+|++.... ......+..|+.+++. +|+||+++|+|.+++.
T Consensus 39 ~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 118 (389)
T 3gni_B 39 DLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLIC 118 (389)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH
T ss_pred CceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHh
Confidence 68899999875 68999999997654 2234556667766543 6899999999999886
Q ss_pred cC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 465 SS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 465 ~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
.. ...+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 119 THFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 53 345899999999999999999999 567999999999999999999999999988654
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=175.52 Aligned_cols=213 Identities=23% Similarity=0.253 Sum_probs=134.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++ ++.+.+
T Consensus 13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~ 91 (292)
T 3o0g_A 13 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYF 91 (292)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHH
T ss_pred CCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHH
Confidence 468999999875 578999999865432 22345566666643 268999975 555555
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----c----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----T---- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----~---- 534 (639)
......+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 92 ~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~ 168 (292)
T 3o0g_A 92 DSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYR 168 (292)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGC
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCc
Confidence 544456899999999999999999999 5689999999999999999999999999998764322110 0
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC-C-c---ceeeecccccc---cccc
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI-S-V---MEVVDVNLLSM---EDKY 589 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~-~-~---~~~~d~~l~~~---~~~~ 589 (639)
....+.++||| | ||+.|..........+....+... +. . . .+..+..-... ....
T Consensus 169 aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (292)
T 3o0g_A 169 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSL 248 (292)
T ss_dssp CHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCC
T ss_pred ChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcch
Confidence 01124478999 7 677775322111111112211111 10 0 0 00000000000 0000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.++..+|++.+|++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 249 VNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0001122345668889999999999999999975
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=178.16 Aligned_cols=212 Identities=21% Similarity=0.229 Sum_probs=137.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++....|..+|+|++..... .....+..|+..++. +|+||+++ +|.+++.
T Consensus 13 G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~ 91 (288)
T 1ob3_A 13 GTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLD 91 (288)
T ss_dssp ETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHH
T ss_pred CCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHH
Confidence 468899999988899999999865432 223456667766442 68899885 8888876
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-----------F 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-----------~ 533 (639)
.....+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........ .
T Consensus 92 ~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a 168 (288)
T 1ob3_A 92 VCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRA 168 (288)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCC
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccC
Confidence 65556899999999999999999999 568999999999999999999999999999865422110 0
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC--Cc---c--eeeeccccccccc-cc
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI--SV---M--EVVDVNLLSMEDK-YF 590 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~--~~---~--~~~d~~l~~~~~~-~~ 590 (639)
+. ...+.++||| | ||+.|..... ....+....+... +. .. . ..+++........ ..
T Consensus 169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (288)
T 1ob3_A 169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS-EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWE 247 (288)
T ss_dssp HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGG
T ss_pred chheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHH
Confidence 00 1123478999 7 8888875321 1111111111111 00 00 0 0111111100000 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.........+.+++.+|++.+|++|||+.|+++
T Consensus 248 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 248 SFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp GTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000112235678889999999999999999875
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=184.00 Aligned_cols=197 Identities=21% Similarity=0.252 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--------hhhhhHHHHHHHHH-------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--------RAFKSFDVACDMMK-------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~-------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+||||+++|+
T Consensus 146 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~lv~e~~~~g~ 225 (419)
T 3i6u_A 146 GACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGE 225 (419)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESSEEEEEEECCTTCB
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecCceEEEEEcCCCCc
Confidence 468999999864 578999999865421 11234666776644 27899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCC---
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~--- 532 (639)
|.+++... ..+++.....++.++++||+||| ..+|+||||||+||+++. +..+||+|||+|+........
T Consensus 226 L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~ 301 (419)
T 3i6u_A 226 LFDKVVGN-KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTL 301 (419)
T ss_dssp GGGGTSSS-CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeecccceecCCCcccccc
Confidence 99988743 46899999999999999999999 567999999999999965 445999999999876543211
Q ss_pred -------ccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 533 -------FTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 533 -------~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
.+. ...+.++||| | ||+.|.... .....+.+.+...... ..+.
T Consensus 302 ~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~-~~~~~~~~~i~~~~~~-----~~~~-------- 367 (419)
T 3i6u_A 302 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH-RTQVSLKDQITSGKYN-----FIPE-------- 367 (419)
T ss_dssp ---CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC-SSSCCHHHHHHTTCCC-----CCHH--------
T ss_pred CCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC-cchHHHHHHHhcCCCC-----CCch--------
Confidence 011 0112367888 6 777776532 1222232222211100 0000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.|+++
T Consensus 368 --~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 368 --VWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp --HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred --hhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 01112345778899999999999999999986
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-19 Score=187.29 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=133.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.- ..|..+|+|.+..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 22 G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i 101 (444)
T 3soa_A 22 GAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDI 101 (444)
T ss_dssp C--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHH
Confidence 56899999875 5688999999865432 223456677776542 689999999999888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCccc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSFTQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~~~----- 535 (639)
... ..+++.....++.+++.||+||| ..+|+||||||+||+++ .++.+||+|||+|+...........
T Consensus 102 ~~~-~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~ 177 (444)
T 3soa_A 102 VAR-EYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTP 177 (444)
T ss_dssp HHC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCG
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCc
Confidence 653 35899999999999999999999 56899999999999998 4578999999999876543221000
Q ss_pred ----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | +|+.|..+. ....+..-+..... +.-.+. ....
T Consensus 178 ~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~--~~~~~~~~i~~~~~----~~~~~~-----------~~~~ 240 (444)
T 3soa_A 178 GYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE--DQHRLYQQIKAGAY----DFPSPE-----------WDTV 240 (444)
T ss_dssp GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHTCC----CCCTTT-----------TTTS
T ss_pred ccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHhCCC----CCCccc-----------cccC
Confidence 0122367888 6 788776431 11111111111000 000000 0112
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++..|++.+|++|||+.|+++
T Consensus 241 s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 241 TPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 234667888999999999999999986
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=168.73 Aligned_cols=189 Identities=25% Similarity=0.305 Sum_probs=99.6
Q ss_pred CcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCccc
Q 041082 126 LETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 126 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
+..+.+..+.+++..+ +..+++|+.|++++|.++.+ | .+..+++|+.|++++|.+.+.
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-------------------~-~~~~l~~L~~L~L~~n~l~~~ 83 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-------------------Q-GIQYLPNVTKLFLNGNKLTDI 83 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-------------------T-TGGGCTTCCEEECCSSCCCCC
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-------------------h-hHhcCCCCCEEEccCCccCCC
Confidence 4444555565554322 34555666666666655542 1 144455666666666666554
Q ss_pred CccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCC
Q 041082 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNK 285 (639)
Q Consensus 206 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 285 (639)
.+ +..+++|++|++++|.+++. +.+..+++|+.|++++|.
T Consensus 84 ~~--l~~l~~L~~L~l~~n~l~~~--------------------------------------~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 84 KP--LANLKNLGWLFLDENKVKDL--------------------------------------SSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCG--------------------------------------GGGTTCTTCCEEECTTSC
T ss_pred cc--cccCCCCCEEECCCCcCCCC--------------------------------------hhhccCCCCCEEECCCCc
Confidence 43 55666666666666655431 113344455555555555
Q ss_pred CCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhh
Q 041082 286 LNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPST 365 (639)
Q Consensus 286 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 365 (639)
+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++. | .
T Consensus 124 i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~ 195 (291)
T 1h6t_A 124 ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-A 195 (291)
T ss_dssp CCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-G
T ss_pred CCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-h
Confidence 5432 2344455555555555555543 345555555555555555554433 55555666666666655553 2 2
Q ss_pred hhcCCCCcEEEcccCCCCC
Q 041082 366 LWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 366 ~~~l~~L~~L~ls~N~l~~ 384 (639)
+..+++|+.|++++|++..
T Consensus 196 l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCSEEEEEEEEEEC
T ss_pred hccCCCCCEEECcCCcccC
Confidence 5555666666666665543
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-19 Score=177.23 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=134.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++|+|
T Consensus 37 G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L 116 (290)
T 1t4h_A 37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL 116 (290)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBH
T ss_pred CCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCH
Confidence 568999999864 56789999886543 223345666666632 368899999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCC------
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
.+++... ..+++..+..++.++++||+|||.. .++|+||||||+||+++ .++.+||+|||++.........
T Consensus 117 ~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~ 194 (290)
T 1t4h_A 117 KTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 194 (290)
T ss_dssp HHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCc
Confidence 9988642 4588999999999999999999943 23499999999999998 7899999999999765433211
Q ss_pred ---ccc---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 ---FTQ---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 ---~~~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|.... .....+............++ ....
T Consensus 195 ~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~----~~~~~~~~~~~~~~~~~~~~--------------~~~~ 256 (290)
T 1t4h_A 195 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTSGVKPASFD--------------KVAI 256 (290)
T ss_dssp CCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHHHHTTTCCCGGGG--------------GCCC
T ss_pred CcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCc----CcHHHHHHHHhccCCccccC--------------CCCC
Confidence 000 0123367888 6 787776531 12222222211111000000 0112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++..|++.+|++|||+.||++
T Consensus 257 ~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 257 PEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhhCCCHHHHhh
Confidence 34778889999999999999999985
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-19 Score=178.94 Aligned_cols=208 Identities=20% Similarity=0.209 Sum_probs=135.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .|..+|+|++..... .....+..|+..++ .+|+||+++++|..++
T Consensus 14 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 93 (311)
T 4agu_A 14 GSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELD 93 (311)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH
T ss_pred cCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHH
Confidence 468899999875 488999998854432 22344556666643 2689999999988876
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 94 ~~-~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~ 169 (311)
T 4agu_A 94 RY-QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYR 169 (311)
T ss_dssp HT-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGC
T ss_pred hh-hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCcccc
Confidence 54 345899999999999999999999 568999999999999999999999999999876532211
Q ss_pred cc-----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC------------C---cceeeecccc
Q 041082 533 FT-----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI------------S---VMEVVDVNLL 583 (639)
Q Consensus 533 ~~-----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~------------~---~~~~~d~~l~ 583 (639)
.+ ....+.++||| | ||+.|..... .......+...... . ....-++.-.
T Consensus 170 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 4agu_A 170 SPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS--DVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDM 247 (311)
T ss_dssp CHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSC
T ss_pred ChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhcccccccccccccccccccCcCCCcccc
Confidence 00 01123478998 6 8888875321 11111111111100 0 0011111100
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... ...+.....+.+++..|++.+|++|||+.|+++
T Consensus 248 ~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 248 EPLE---LKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CCHH---HHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred chhh---hhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000 000122345778999999999999999999985
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-19 Score=183.26 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=129.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+.... ...+..|+..++ .+|+||+++|+|.+++.
T Consensus 22 G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 98 (325)
T 3kn6_A 22 GSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIK 98 (325)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHH
Confidence 468999999875 57899999986432 234444554432 27899999999999887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeeccccccccccccCCCccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
.. ..+++..+..|+.++++||+||| ..+|+||||||+||+++.++ .+||+|||+++...........
T Consensus 99 ~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~ 174 (325)
T 3kn6_A 99 KK-KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLH 174 (325)
T ss_dssp HC-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------------
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcC
Confidence 53 46899999999999999999999 66899999999999997655 8999999999865433211000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCC--ccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSG--EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~--~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | ||+.|....... .....+.......... . ++ .+....
T Consensus 175 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~-~-~~----------~~~~~~ 242 (325)
T 3kn6_A 175 YAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF-S-FE----------GEAWKN 242 (325)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC-C-CC----------SHHHHT
T ss_pred ccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC-C-CC----------cccccC
Confidence 0112367888 6 788887542111 1111222211111110 0 00 001122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
....+.+++..|++.+|++|||+.|++
T Consensus 243 ~s~~~~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 243 VSQEAKDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp SCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred CCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence 234577888999999999999999887
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-19 Score=177.44 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... ++..+++|.+..... .....+..|+..++ .+|+||+++|+|.+
T Consensus 17 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~ 96 (279)
T 2w5a_A 17 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLAS 96 (279)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHH
T ss_pred CCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHH
Confidence 468899999875 688999999875432 22345666666533 26899999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccC--CCCeEeecCCCCceeecCCcceeeccccccccccccCCC----
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGY--STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---- 532 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~--~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---- 532 (639)
++.. ....+++..+.+++.+++.||+|||... ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~ 176 (279)
T 2w5a_A 97 VITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTF 176 (279)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHH
T ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeecccccccccc
Confidence 8865 2345899999999999999999999543 234999999999999999999999999999876533210
Q ss_pred -------ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 -------FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 -------~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+. ...+.++||| | ||+.|.... ....+.+.+...... .+
T Consensus 177 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~i~~~~~~----~~-------------- 236 (279)
T 2w5a_A 177 VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKIREGKFR----RI-------------- 236 (279)
T ss_dssp HSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CC--------------
T ss_pred CCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc--CHHHHHHHHhhcccc----cC--------------
Confidence 000 1123368888 6 787776532 111122211111000 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
+......+.+++.+|++.+|++||++.||++.+.
T Consensus 237 ~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 237 PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 0112235677889999999999999999997653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=187.87 Aligned_cols=167 Identities=25% Similarity=0.371 Sum_probs=148.2
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..++.|+++++.+.. +| .|..+++|++|+|++|.+.+..| +..+++|+.|+|++|.+.+. | .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence 357789999999875 34 58999999999999999997655 99999999999999999863 3 7999999999999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP 207 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 207 (639)
++|.+++. ..+..+++|+.|+|++|.|+++ .+++|+.|+|++|++++..| +..+++|+.|+|++|.+.++ |
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~ 191 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R 191 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h
Confidence 99999864 4689999999999999999985 47899999999999998777 88999999999999999886 3
Q ss_pred cccCCCCCCCEEEccCCCCCCCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSST 230 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~ 230 (639)
.+..+++|+.|+|++|.+...+
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEECCC
T ss_pred -HHccCCCCCEEEccCCcCcCCc
Confidence 5899999999999999998754
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-19 Score=181.93 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=135.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+...... ....+..|+.+++ .+|+||+++|+|
T Consensus 23 G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L 102 (361)
T 2yab_A 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGEL 102 (361)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred CcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcH
Confidence 468999999865 5889999998754322 1345677777743 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+++.........
T Consensus 103 ~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~ 178 (361)
T 2yab_A 103 FDFLAQ-KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNI 178 (361)
T ss_dssp HHHHTT-CSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccC
Confidence 999864 346899999999999999999999 56899999999999998776 79999999998765432110
Q ss_pred --cc----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --TQ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+. ...+.++|+| | +|+.|.... .-.+......... -.+++..
T Consensus 179 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-----~~~~~~~~i~~~~--~~~~~~~---------- 241 (361)
T 2yab_A 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITAVS--YDFDEEF---------- 241 (361)
T ss_dssp CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTC--CCCCHHH----------
T ss_pred CCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhcC--CCCCchh----------
Confidence 00 0112367888 6 777776431 1111111111100 0011110
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++..|+..+|++|||+.|+++
T Consensus 242 ~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 242 FSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0111234667888999999999999999984
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-19 Score=181.29 Aligned_cols=191 Identities=21% Similarity=0.276 Sum_probs=131.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..+..+|+|++..... .....+..|+..++ .+|+||+ +|+|.++
T Consensus 20 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~ 98 (336)
T 3h4j_B 20 GSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDY 98 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHH
Confidence 46899999986 5688999999865432 22345667777644 2689999 6888887
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--------- 533 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--------- 533 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||++++++.+||+|||+++.........
T Consensus 99 l~~~-~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~ 174 (336)
T 3h4j_B 99 IVEK-KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYA 174 (336)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTS
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcC
Confidence 7642 35899999999999999999999 5579999999999999999999999999998765432110
Q ss_pred -cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 -TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 -~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|.++..... ..+.+..... ..+.....
T Consensus 175 aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--------------~~~~i~~~~~-------~~p~~~s~ 233 (336)
T 3h4j_B 175 APEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--------------LFKKVNSCVY-------VMPDFLSP 233 (336)
T ss_dssp CGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT--------------CBCCCCSSCC-------CCCTTSCH
T ss_pred CHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH--------------HHHHHHcCCC-------CCcccCCH
Confidence 00 0012356777 5 6666664321100 0000000000 00111223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 234 ~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 234 GAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp HHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHcCCChhHCcCHHHHHh
Confidence 4667889999999999999999975
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=178.58 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=131.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|...++ .+|+||+++|+|..+
T Consensus 16 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~ 95 (337)
T 1o6l_A 16 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFH 95 (337)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHH
Confidence 468999999865 588999999875432 22344555665543 278999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..........
T Consensus 96 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y 171 (337)
T 1o6l_A 96 LSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEY 171 (337)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhh
Confidence 8642 35889999999999999999999 56899999999999999999999999999986432211100
Q ss_pred ---c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 ---Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 ---~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
. ...+.++|+| | ||+.|.... +..+......... . .. +.....
T Consensus 172 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~---~---~~----------p~~~s~ 230 (337)
T 1o6l_A 172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFELILMEE---I---RF----------PRTLSP 230 (337)
T ss_dssp CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCC---C---CC----------CTTSCH
T ss_pred CChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHHHHHHHHHcCC---C---CC----------CCCCCH
Confidence 0 0112367777 5 777776421 1111111111010 0 00 001122
Q ss_pred HHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.+.++..+|++.+|++|| ++.||++
T Consensus 231 ~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 456788899999999999 8888875
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-19 Score=183.74 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=133.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-----hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-----AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... ++..+|+|++...... ....+..|+.+++ .+|+||+++|+|.
T Consensus 35 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~ 114 (351)
T 3c0i_A 35 GPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLC 114 (351)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHH
Confidence 468999999864 6899999998754321 2345677777644 3789999999998
Q ss_pred hcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCcc
Q 041082 461 KCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSFT 534 (639)
Q Consensus 461 ~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~~ 534 (639)
+.+.. ....+++.....++.+++.||+||| ..+|+||||||+||+++.+.. +|++|||+++..........
T Consensus 115 ~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~ 191 (351)
T 3c0i_A 115 FEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAG 191 (351)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCC
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeec
Confidence 87754 2335899999999999999999999 568999999999999987654 99999999987654322100
Q ss_pred c---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 535 Q---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 535 ~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. ...+.++||| | ||+.|.... ...+...+.. .. . ..++..
T Consensus 192 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~~~i~~---~~-~-~~~~~~-------- 255 (351)
T 3c0i_A 192 GRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLFEGIIK---GK-Y-KMNPRQ-------- 255 (351)
T ss_dssp CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHHHHHHH---TC-C-CCCHHH--------
T ss_pred CCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHHHHHHc---CC-C-CCCccc--------
Confidence 0 0122367888 6 777776531 1111111110 00 0 001100
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++|||+.|+++
T Consensus 256 --~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 256 --WSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp --HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0112235677889999999999999999985
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=175.52 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=132.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..+|+|.+.... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 40 G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 117 (314)
T 3com_A 40 GSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRL 117 (314)
T ss_dssp ---CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHh
Confidence 468899999875 48899999986543 2345666666643 368999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---------- 535 (639)
....+++..+..++.+++.||+||| ..+++||||||+||+++.++.+||+|||+++...........
T Consensus 118 ~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP 194 (314)
T 3com_A 118 RNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP 194 (314)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccCh
Confidence 4456899999999999999999999 568999999999999999999999999999766433211000
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|..+.. .......+.. .+. +... .+......+.
T Consensus 195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~-~~~-------~~~~--------~~~~~~~~l~ 256 (314)
T 3com_A 195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH--PMRAIFMIPT-NPP-------PTFR--------KPELWSDNFT 256 (314)
T ss_dssp HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHH-SCC-------CCCS--------SGGGSCHHHH
T ss_pred hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHhc-CCC-------cccC--------CcccCCHHHH
Confidence 0113367777 5 7777664311 0000000000 000 0000 0111223567
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+++.+|++.+|++||++.++++
T Consensus 257 ~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 257 DFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHccCChhhCcCHHHHHh
Confidence 7889999999999999999985
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-19 Score=181.37 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=123.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+|+|++.... ..+.+..|+..++ .+|+||+++|+|.+++..
T Consensus 64 G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 141 (349)
T 2w4o_A 64 GATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVE 141 (349)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTT
T ss_pred CCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHh
Confidence 468999999876 46889999986543 2234555655543 278999999999998875
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----c----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----T---- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~---- 534 (639)
. ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+|||+++......... +
T Consensus 142 ~-~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~ 217 (349)
T 2w4o_A 142 K-GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYC 217 (349)
T ss_dssp C-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGS
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCcc
Confidence 3 45899999999999999999999 567999999999999975 8999999999998764332110 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
....+.++||| | ||+.|..+..... .+.. ...... .....+. ..+....
T Consensus 218 aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~---~i~~~~-~~~~~~~-----------~~~~~~~ 281 (349)
T 2w4o_A 218 APEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-FMFR---RILNCE-YYFISPW-----------WDEVSLN 281 (349)
T ss_dssp CHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-HHHH---HHHTTC-CCCCTTT-----------TTTSCHH
T ss_pred CHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-HHHH---HHHhCC-CccCCch-----------hhhCCHH
Confidence 01123378888 6 7887765321111 0111 111110 0000000 0112235
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|++.+|++|||+.|+++
T Consensus 282 ~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 282 AKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 677889999999999999999986
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-19 Score=178.70 Aligned_cols=196 Identities=22% Similarity=0.250 Sum_probs=120.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh--hhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA--FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~--~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..+..+|+|++....... ...+..+....+ .+|+||++ |+|.+++
T Consensus 18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l 96 (290)
T 3fme_A 18 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFY 96 (290)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHH
T ss_pred CCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHH
Confidence 46899999986 578999999986542211 111222222111 37899997 5887766
Q ss_pred cc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--------
Q 041082 464 YS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 464 ~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
.. ....+++..+..|+.+++.||+|||.. .+|+||||||.||+++.++.+||+|||+++........
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~ 174 (290)
T 3fme_A 97 KQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKP 174 (290)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC---------------CCCCC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCcc
Confidence 53 345689999999999999999999942 27999999999999999999999999999866433211
Q ss_pred --ccc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 533 --FTQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 533 --~~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
.+. ...+.++||| | ||+.|..........+...+....+. .. .
T Consensus 175 y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---------~~---------~ 236 (290)
T 3fme_A 175 YMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ---------LP---------A 236 (290)
T ss_dssp CSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC---------CC---------T
T ss_pred ccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC---------cc---------c
Confidence 000 0123367888 6 78877653111111111111111100 00 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++|||+.||++
T Consensus 237 ~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 237 DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 111234677889999999999999999986
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-19 Score=175.47 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=135.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.... +..+|+|.+..........+..|+..++. +|+||+++++|.+++..
T Consensus 20 G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~ 99 (277)
T 3f3z_A 20 GSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVH 99 (277)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH
T ss_pred cCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHH
Confidence 4688999998754 67899999876655555677777777542 68999999999888764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCCccc-------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
. ..+++..+.+|+.+++.||+||| ..+|+||||||+||++ +.++.+|++|||+++...........
T Consensus 100 ~-~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~ 175 (277)
T 3f3z_A 100 K-RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYV 175 (277)
T ss_dssp H-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCcc
Confidence 2 35899999999999999999999 5679999999999999 78899999999999876543221000
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|..... .......+...... . .. .........+
T Consensus 176 aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~----~-~~----------~~~~~~~~~~ 238 (277)
T 3f3z_A 176 SPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPT--DSEVMLKIREGTFT----F-PE----------KDWLNVSPQA 238 (277)
T ss_dssp CHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHCCCC----C-CH----------HHHTTSCHHH
T ss_pred ChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHhCCCC----C-Cc----------hhhhcCCHHH
Confidence 0123367777 5 7777764311 11111111100000 0 00 0000123456
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 239 ESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 77889999999999999999985
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=172.37 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=128.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+..... .....+..++..+. .+|+||+++|+|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (289)
T 1x8b_A 22 GEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADA 101 (289)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHH
T ss_pred CCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHH
Confidence 468899999875 689999999865322 22234444444322 268999999999999
Q ss_pred cccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------Ccceeeccc
Q 041082 463 LYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------NMVAHLSDF 520 (639)
Q Consensus 463 l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------~~~~~i~df 520 (639)
+... ...+++..+..|+.++++||+||| ..+|+||||||+||+++. ...+|++||
T Consensus 102 l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Df 178 (289)
T 1x8b_A 102 ISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDL 178 (289)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC--------------------CCCEEECCC
T ss_pred HHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEccc
Confidence 8652 245899999999999999999999 568999999999999984 447899999
Q ss_pred cccccccccCCCc-c-----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeee
Q 041082 521 GMAKLLLKEDQSF-T-----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVD 579 (639)
Q Consensus 521 gla~~~~~~~~~~-~-----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d 579 (639)
|+++......... + ....+.++||| | +|+.+.. .+...........+
T Consensus 179 g~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~----~~~~~~~~~~~~~~-------- 246 (289)
T 1x8b_A 179 GHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR----NGDQWHEIRQGRLP-------- 246 (289)
T ss_dssp TTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS----SSHHHHHHHTTCCC--------
T ss_pred ccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc----chhHHHHHHcCCCC--------
Confidence 9998765433210 0 00122378888 6 5554432 11111111111110
Q ss_pred ccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 580 VNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 580 ~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+. ......+.+++.+|++.+|++||++.|+++
T Consensus 247 -~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 247 -RIP----------QVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp -CCS----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -CCC----------cccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 000 011234677888999999999999999985
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=178.79 Aligned_cols=198 Identities=19% Similarity=0.193 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... .+..+|+|++..... ....+..|+..++ .+|+||+++|+|.+++..
T Consensus 31 G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 109 (361)
T 3uc3_A 31 GNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICN 109 (361)
T ss_dssp STTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHh
Confidence 568999999875 688999999865432 2244556666543 268999999999998864
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--eeeccccccccccccCCC----cc-----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKLLLKEDQS----FT----- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~~~~~~~~----~~----- 534 (639)
. ..+++.....++.++++||+||| ..+|+||||||+||+++.++. +||+|||+|+........ .+
T Consensus 110 ~-~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a 185 (361)
T 3uc3_A 110 A-GRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIA 185 (361)
T ss_dssp H-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCC
Confidence 2 35899999999999999999999 667999999999999987765 999999999743322110 00
Q ss_pred -c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 535 -Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 535 -~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
. ...+.++||| | ||+.|....- ........+......... . .. .......
T Consensus 186 PE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-~~~~~~~~~~~~~~~~~~-~-~~------------~~~~s~~ 250 (361)
T 3uc3_A 186 PEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE-EPRDYRKTIQRILSVKYS-I-PD------------DIRISPE 250 (361)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHHTTCCC-C-CT------------TSCCCHH
T ss_pred hhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc-cHHHHHHHHHHHhcCCCC-C-CC------------cCCCCHH
Confidence 0 0111247888 6 7888775321 112222222221111100 0 00 0001124
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+.+++.+|++.+|++|||+.|+++.
T Consensus 251 ~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 251 CCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHccCChhHCcCHHHHHhC
Confidence 5678899999999999999999863
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-19 Score=180.22 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=134.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+...... ....+..|+..++. +|+||+++|+|
T Consensus 22 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L 101 (326)
T 2y0a_A 22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 101 (326)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCH
Confidence 468999999865 5889999998654321 23456677776442 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+++.........
T Consensus 102 ~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 177 (326)
T 2y0a_A 102 FDFLAE-KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNI 177 (326)
T ss_dssp HHHHTT-SSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCC
T ss_pred HHHHHh-cCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccc
Confidence 999864 346899999999999999999999 66899999999999999877 79999999998765322110
Q ss_pred --c------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ . ...+.++||| | ||+.|.... .-.+......... .+ +.+..
T Consensus 178 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~-~~-~~~~~---------- 240 (326)
T 2y0a_A 178 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANVSAVN-YE-FEDEY---------- 240 (326)
T ss_dssp CSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHHTC-CC-CCHHH----------
T ss_pred cCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHHhcC-CC-cCccc----------
Confidence 0 0 1122367888 6 777776421 1111111100000 00 00000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++|||+.|+++
T Consensus 241 ~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 241 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0112234667888999999999999999986
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=173.86 Aligned_cols=212 Identities=21% Similarity=0.215 Sum_probs=132.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-----hhhhHHHHHHHHH----------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-----AFKSFDVACDMMK----------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~----------------------------~Lv~e 452 (639)
.++|.||++.. ..+..+|+|++...... ....+..|+..++ .+|+|
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e 99 (308)
T 3g33_A 20 GAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFE 99 (308)
T ss_dssp SSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEE
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEeh
Confidence 56899999985 56889999998643211 1123333333311 36788
Q ss_pred cCCCCCchhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC
Q 041082 453 YMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ 531 (639)
Q Consensus 453 y~~~gsL~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~ 531 (639)
|+. |+|.+++.... ..+++..+..|+.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.......
T Consensus 100 ~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~ 175 (308)
T 3g33_A 100 HVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA 175 (308)
T ss_dssp CCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC
T ss_pred hhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc
Confidence 887 59988887533 34899999999999999999999 56799999999999999999999999999987653322
Q ss_pred Ccc--------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-C-CC-cceee--ecccc
Q 041082 532 SFT--------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-P-IS-VMEVV--DVNLL 583 (639)
Q Consensus 532 ~~~--------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~-~~-~~~~~--d~~l~ 583 (639)
... ....+.++||| | ||+.|..... ....+...+...- + .. ..+.+ .....
T Consensus 176 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 254 (308)
T 3g33_A 176 LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS-EADQLGKIFDLIGLPPEDDWPRDVSLPRGAF 254 (308)
T ss_dssp SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS-HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGS
T ss_pred cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCChhhccchhhcccccc
Confidence 100 01123478999 7 8888875321 1111111111111 1 11 10000 00000
Q ss_pred cccccc--ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKY--FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~--~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... ....++....+.+++.+|++.+|++|||+.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 255 PPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 000000 0000112345678889999999999999999985
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=176.98 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=94.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|||++..........+..|+..++ .+|+||+++|+|.+++.
T Consensus 24 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 103 (316)
T 2ac3_A 24 GAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIH 103 (316)
T ss_dssp CSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHH
T ss_pred CceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHh
Confidence 46889999985 468899999987654444456666666543 26899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeecccccccccc
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLL 527 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~ 527 (639)
.. ..+++.....++.++++||+||| ..+|+||||||+||+++.++. +||+|||+++...
T Consensus 104 ~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 104 KR-RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIK 165 (316)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---
T ss_pred cc-CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccc
Confidence 53 35889999999999999999999 568999999999999998766 9999999987653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-18 Score=174.49 Aligned_cols=157 Identities=23% Similarity=0.230 Sum_probs=124.8
Q ss_pred ccEEEeecCccccccchhhc-CCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECC
Q 041082 252 LEVFSMFNCNISGGILEEIS-NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLS 330 (639)
Q Consensus 252 l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 330 (639)
++.|++++|++++..+..+. .+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34455555555544455555 77888889999998887777788888899999999999888777788888999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh---hcCCCCcEEEcccCCCCCCCccccccccc--cccccccCCC
Q 041082 331 GNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL---WNLKDILYLNLSSNFFISPLPLEIGNLKV--LVGIDLSMNN 405 (639)
Q Consensus 331 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~p~~~~~l~~--L~~l~ls~N~ 405 (639)
+|.+++..|..|..+++|+.|+|++|+++.+.+..| ..+++|+.|+|++|.+.+..+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999988888889999999999999999988766666 56888999999999988766677777776 4788999998
Q ss_pred CCC
Q 041082 406 FSG 408 (639)
Q Consensus 406 l~g 408 (639)
+..
T Consensus 201 ~~C 203 (361)
T 2xot_A 201 LEC 203 (361)
T ss_dssp EEC
T ss_pred ccC
Confidence 864
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=181.30 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=132.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--------hhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--------AFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--------~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.++|.||++... +|..||||++...... ....+..|...++ .+||||+++
T Consensus 105 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g 184 (365)
T 2y7j_A 105 GVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184 (365)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTT
T ss_pred CCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCC
Confidence 458899999875 6899999998654311 1234445554432 268999999
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
|+|.+++.. ...+++..+..++.++++||+||| ..+|+||||||.||+++.++.+|++|||++..+.......
T Consensus 185 ~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~ 260 (365)
T 2y7j_A 185 GELFDYLTE-KVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELC 260 (365)
T ss_dssp CBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCC
T ss_pred CcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCC
Confidence 999998864 235899999999999999999999 5689999999999999999999999999998765432110
Q ss_pred -c------c----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 534 -T------Q----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 534 -~------~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
+ . ...+.++||| | ||+.|.... ........+..... ....+.
T Consensus 261 gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~----~~~~~~------ 328 (365)
T 2y7j_A 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR--RQILMLRMIMEGQY----QFSSPE------ 328 (365)
T ss_dssp SCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----CCCHHH------
T ss_pred CCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhCCC----CCCCcc------
Confidence 0 0 0122356777 5 666665421 11111111110000 000000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 329 -----~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 329 -----WDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp -----HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0112235778889999999999999999986
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=180.35 Aligned_cols=187 Identities=22% Similarity=0.230 Sum_probs=126.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+||||+++|+|..
T Consensus 34 G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 113 (353)
T 3txo_A 34 GSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMF 113 (353)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999865 578999999875421 22233444444432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 114 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~ 189 (353)
T 3txo_A 114 HIQKS-RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPD 189 (353)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGG
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcC
Confidence 88653 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | ||+.|.... +-.+......... ..-| ....
T Consensus 190 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~---~~~p-------------~~~~ 248 (353)
T 3txo_A 190 YIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-----NEDDLFEAILNDE---VVYP-------------TWLH 248 (353)
T ss_dssp GCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCC---CCCC-------------TTSC
T ss_pred eEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCC---CCCC-------------CCCC
Confidence 0112367888 6 788887531 1111111111110 0000 0111
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.++..+|++.+|++||++
T Consensus 249 ~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 249 EDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHHHHHHHHHTCSSGGGSTTS
T ss_pred HHHHHHHHHHhhhCHHHccCC
Confidence 235678889999999999998
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=159.15 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=99.8
Q ss_pred EEEeecCccccccc-hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCC
Q 041082 254 VFSMFNCNISGGIL-EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332 (639)
Q Consensus 254 ~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 332 (639)
.|++++|.+++..+ ..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 33444444433322 23567778888888888888776777888888888888888888777777888888888888888
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCC
Q 041082 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPL 386 (639)
Q Consensus 333 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 386 (639)
.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++....
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 888777888888888888888888888877888888888888888888776543
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-19 Score=180.50 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=128.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.... .+++|.+..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 44 G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~ 121 (319)
T 2y4i_B 44 GRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVR 121 (319)
T ss_dssp SSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTT
T ss_pred CCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHH
Confidence 4688999998754 588998764321 11223334443322 37899999999999998
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------------ 532 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------------ 532 (639)
.....+++..+..++.++++||+||| ..+|+||||||+||+++ ++.+|++|||+++........
T Consensus 122 ~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~ 197 (319)
T 2y4i_B 122 DAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGW 197 (319)
T ss_dssp SSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGG
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCc
Confidence 76567899999999999999999999 56899999999999998 679999999998764321100
Q ss_pred ----ccc-------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 533 ----FTQ-------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 533 ----~~~-------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ..+......... .+....
T Consensus 198 ~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~~-----~~~~~~-- 265 (319)
T 2y4i_B 198 LCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP-----AEAIIWQMGTGM-----KPNLSQ-- 265 (319)
T ss_dssp GGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC-----HHHHHHHHHTTC-----CCCCCC--
T ss_pred ccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHhccCC-----CCCCCc--
Confidence 000 0013357777 5 7777764311 111111111110 010000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
..+...+.+++..|++.+|++||++.+|+++|+.+....
T Consensus 266 -------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 266 -------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp -------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred -------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 001123667889999999999999999999999887653
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=180.30 Aligned_cols=197 Identities=19% Similarity=0.260 Sum_probs=134.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|.+..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 40 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l 119 (362)
T 2bdw_A 40 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 119 (362)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHH
Confidence 468999999864 578999999865432 233456667766442 689999999999888
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC---cceeeccccccccccccCCCc----c--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN---MVAHLSDFGMAKLLLKEDQSF----T-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~---~~~~i~dfgla~~~~~~~~~~----~-- 534 (639)
... ..+++.....++.++++||+||| ..+|+||||||+||+++.+ +.+||+|||+++......... +
T Consensus 120 ~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~ 195 (362)
T 2bdw_A 120 VAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPG 195 (362)
T ss_dssp TTC-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTT
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCcc
Confidence 643 45899999999999999999999 5689999999999999865 459999999998765432110 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | ||+.|..+. ....+...+...... .-.+ ......
T Consensus 196 y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~--~~~~~~~~i~~~~~~----~~~~-----------~~~~~~ 258 (362)
T 2bdw_A 196 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--DQHRLYAQIKAGAYD----YPSP-----------EWDTVT 258 (362)
T ss_dssp TCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CCTT-----------GGGGSC
T ss_pred ccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhCCCC----CCcc-----------cccCCC
Confidence 00123368888 6 888876531 111122212111100 0000 001122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.+++.+|++.+|++||++.|+++.
T Consensus 259 ~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 259 PEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 346778889999999999999998853
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-19 Score=181.78 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=130.6
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhhh----hhhhhHHHHHHHHH---------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQYE----RAFKSFDVACDMMK---------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~~----~~~~~f~~e~~~~~---------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|++..... .....+..|+..++ .+||||+++|
T Consensus 65 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~ 144 (355)
T 1vzo_A 65 GAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGG 144 (355)
T ss_dssp TTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSC
T ss_pred CCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCC
Confidence 46899999987 3678999999864321 11222333333321 2789999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
+|.+++... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 145 ~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~ 220 (355)
T 1vzo_A 145 ELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 220 (355)
T ss_dssp BHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGG
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCc
Confidence 999988743 35889999999999999999999 5679999999999999999999999999998654321110
Q ss_pred --------cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 --------TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 --------~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
+. ...+.++||| | ||+.|..... .......+........ +.
T Consensus 221 ~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~------~~--------- 284 (355)
T 1vzo_A 221 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG-EKNSQAEISRRILKSE------PP--------- 284 (355)
T ss_dssp GSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT-SCCCHHHHHHHHHHCC------CC---------
T ss_pred ccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC-ccchHHHHHHHHhccC------CC---------
Confidence 00 0112357777 5 7777764321 1112222222111000 00
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRI-----NAKESVTR 624 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP-----~m~~v~~~ 624 (639)
.+.+....+.+++.+|++.+|++|| ++.|+++.
T Consensus 285 -~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 285 -YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp -CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred -CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 0111223466788999999999999 89998864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-20 Score=207.65 Aligned_cols=217 Identities=19% Similarity=0.156 Sum_probs=146.2
Q ss_pred cCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEE-ccc
Q 041082 121 GNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILE-LQK 199 (639)
Q Consensus 121 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~-L~~ 199 (639)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|..- ..+.. .+..+++.+.+|..+..+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l----~~l~~-ll~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL----LTIIL-LMRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH----HHHHH-HHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh----hhHHH-HHHhcccccCCHHHHHHHHhcccCcchhh
Confidence 45667777777777775 56777777777777777554310 00000 0112233445566666666666666 444
Q ss_pred CCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEE
Q 041082 200 NSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279 (639)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L 279 (639)
|.+. .|+.+.+++|.++..++ ..++.|++++|.+++ +|. ++.+++|+.|
T Consensus 420 n~~~-----------~L~~l~l~~n~i~~l~~------------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L 468 (567)
T 1dce_A 420 AYLD-----------DLRSKFLLENSVLKMEY------------------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL 468 (567)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHH------------------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred cccc-----------hhhhhhhhcccccccCc------------------cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence 4321 11122222222222110 012333333333333 343 6778899999
Q ss_pred ECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccC-CccccCCCCCCEEeCCCCcC
Q 041082 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSI-PTCFGNQTSLRILSLDSNKL 358 (639)
Q Consensus 280 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l 358 (639)
+|++|.|+ .+|..++.+++|+.|++++|++++ +| .++.+++|+.|+|++|.+++.. |..|+.+++|+.|++++|.+
T Consensus 469 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 99999999 789999999999999999999997 56 8999999999999999999887 99999999999999999999
Q ss_pred cccchh---hhhcCCCCcEEEc
Q 041082 359 ISIIPS---TLWNLKDILYLNL 377 (639)
Q Consensus 359 ~~~~p~---~~~~l~~L~~L~l 377 (639)
++.+|. .+..+++|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 987663 3445889998874
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-19 Score=182.33 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=131.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhh-hhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERA-FKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~-~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++....... ...+..|+..++ .+||||++ |+|.+++.
T Consensus 13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 91 (324)
T 3mtl_A 13 GTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLD 91 (324)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHH
Confidence 568999999875 67899999986543221 112223444422 37899998 58888887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----------- 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----------- 533 (639)
.....+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.........
T Consensus 92 ~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a 168 (324)
T 3mtl_A 92 DCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRP 168 (324)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCC
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccC
Confidence 65567899999999999999999999 5689999999999999999999999999998654322110
Q ss_pred cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC----cceeeecccc---cccccc---
Q 041082 534 TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS----VMEVVDVNLL---SMEDKY--- 589 (639)
Q Consensus 534 ~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~----~~~~~d~~l~---~~~~~~--- 589 (639)
+. ...+.++||| | ||+.|.... ........+....... ..+..+..-. ......
T Consensus 169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
T 3mtl_A 169 PDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEA 246 (324)
T ss_dssp HHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCC
T ss_pred hhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchh
Confidence 00 1123478998 6 888887532 1111222222111110 1111100000 000000
Q ss_pred -ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 -FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 -~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.....+.+++.+|++.+|++|||+.||++
T Consensus 247 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 247 LLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 0000112245678899999999999999999985
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=177.42 Aligned_cols=207 Identities=16% Similarity=0.232 Sum_probs=133.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .++..+|+|.+.... .+.+..|+.+++ .+|+||+++++|.++
T Consensus 47 G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~ 123 (330)
T 3nsz_A 47 GKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQL 123 (330)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHH
T ss_pred cCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHH
Confidence 46899999975 568999999986432 244555555532 268899999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc----c---
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF----T--- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~----~--- 534 (639)
+. .+++..+..++.++++||+||| ..+|+||||||+||+++.++ .+||+|||+|+......... +
T Consensus 124 ~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y 196 (330)
T 3nsz_A 124 YQ----TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYF 196 (330)
T ss_dssp GG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGG
T ss_pred HH----hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccc
Confidence 74 3788999999999999999999 66799999999999999776 89999999998765432210 0
Q ss_pred ---c-----cccccccccc--c-------CCCCCCCccCCCccch------------HHHHHhhCCCC---cceeeeccc
Q 041082 535 ---Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTL------------KSWVNDLLPIS---VMEVVDVNL 582 (639)
Q Consensus 535 ---~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l------------~~~~~~~~~~~---~~~~~d~~l 582 (639)
. ...+.++||| | ||+.|..........+ .+|+....... ..+.+....
T Consensus 197 ~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (330)
T 3nsz_A 197 KGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHS 276 (330)
T ss_dssp CCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCC
T ss_pred cChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhcc
Confidence 0 1123478999 6 8888874322111111 11211110000 000000000
Q ss_pred cccccc--cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 583 LSMEDK--YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 583 ~~~~~~--~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... ...........+.+++.+|++.+|++|||+.|+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 277 RKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 000000 00001112345778899999999999999999986
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-18 Score=179.53 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .|..+|+|++..... .....+..|...+. .+|+||+++|+|.+
T Consensus 28 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 107 (345)
T 1xjd_A 28 GSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMY 107 (345)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 578999999875431 12233444444322 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 108 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~ 183 (345)
T 1xjd_A 108 HIQSC-HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPD 183 (345)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGG
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | ||+.|.... ....+..-+.. .. +.. +....
T Consensus 184 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~--~~~~~~~~i~~---~~------~~~----------p~~~s 242 (345)
T 1xjd_A 184 YIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ--DEEELFHSIRM---DN------PFY----------PRWLE 242 (345)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHH---CC------CCC----------CTTSC
T ss_pred cCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHh---CC------CCC----------CcccC
Confidence 0113367888 6 787776531 11111111111 00 000 00112
Q ss_pred HHHHHHHhhccCCCCCCCCCHH-HHH
Q 041082 598 SFVFNLAMECTAESPKQRINAK-ESV 622 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~-~v~ 622 (639)
..+.+++.+|++.+|++||++. ||.
T Consensus 243 ~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 243 KEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 2466788899999999999997 554
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-19 Score=188.32 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=125.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. ..|..+|+|++..... .....+..|...++ .+||||+++|+|.++
T Consensus 159 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~ 238 (446)
T 4ejn_A 159 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH 238 (446)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHH
T ss_pred CcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHH
Confidence 46899999885 4688999999875422 12233344444421 378999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+... ..+++..+..++.++++||+|||. ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 239 l~~~-~~~~~~~~~~~~~qi~~aL~~LH~--~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y 315 (446)
T 4ejn_A 239 LSRE-RVFSEDRARFYGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEY 315 (446)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHHHHHH--HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHhh--cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccc
Confidence 8643 358999999999999999999994 167999999999999999999999999999864332211000
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... ...+.......... .. +.....
T Consensus 316 ~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~~~ 374 (446)
T 4ejn_A 316 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEI------RF----------PRTLGP 374 (446)
T ss_dssp CCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTSCH
T ss_pred cCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CccCCH
Confidence 0112367777 5 777776421 11111111110100 00 011123
Q ss_pred HHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.+.+++.+|++.+|++|| ++.|+++
T Consensus 375 ~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 375 EAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 466788899999999999 9999875
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=176.37 Aligned_cols=211 Identities=22% Similarity=0.273 Sum_probs=133.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .|..+|+|.+...... ....+..|+..++ .+|+||++ |+|.+++.
T Consensus 16 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~ 94 (317)
T 2pmi_A 16 GTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMD 94 (317)
T ss_dssp ---CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHH
Confidence 468899999864 5789999998654322 2345666776643 26899998 68988775
Q ss_pred cC-----CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 465 SS-----NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 465 ~~-----~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t 171 (317)
T 2pmi_A 95 SRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVT 171 (317)
T ss_dssp HHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSC
T ss_pred hccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCccc
Confidence 41 235899999999999999999999 568999999999999999999999999999876432111
Q ss_pred ----ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--C-CCcc-e-----eeecccccc
Q 041082 533 ----FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--P-ISVM-E-----VVDVNLLSM 585 (639)
Q Consensus 533 ----~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~-~~~~-~-----~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|.... ........+.... + .... . ..++.+...
T Consensus 172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (317)
T 2pmi_A 172 LWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT--NDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQR 249 (317)
T ss_dssp CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCC
T ss_pred ccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccc
Confidence 000 1123478999 7 888887532 1111111111111 0 0000 0 001111000
Q ss_pred ccc------cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDK------YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~------~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... ...........+.++..+|++.+|++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 250 PPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp CCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 000 00000011235778999999999999999999975
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=160.00 Aligned_cols=132 Identities=25% Similarity=0.328 Sum_probs=64.0
Q ss_pred CCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCC
Q 041082 275 NLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLD 354 (639)
Q Consensus 275 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 354 (639)
+++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|+|++|.++...+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444444433444444444444444444444444444444455555555555444444444444555555555
Q ss_pred CCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCC
Q 041082 355 SNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNF 406 (639)
Q Consensus 355 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l 406 (639)
+|++.+..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|+|
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555544444444455555555555554444444444455555555555544
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=181.47 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=98.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.... +..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 85 G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~ 164 (437)
T 4aw2_A 85 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTL 164 (437)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHH
Confidence 4689999999764 78999999865322 12234666666543 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||+||| ..+|+||||||+|||+|.++.+||+|||+|+....
T Consensus 165 l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~ 227 (437)
T 4aw2_A 165 LSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME 227 (437)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhccc
Confidence 9764556899999999999999999999 66899999999999999999999999999976643
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-19 Score=181.23 Aligned_cols=195 Identities=22% Similarity=0.247 Sum_probs=130.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--------hhhhhHHHHHHHHH--------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--------RAFKSFDVACDMMK--------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~--------------------~Lv~ey~~~g 457 (639)
.++|.||++.. .++..+|+|.+..... .....+..|+..++ .+|+||+..|
T Consensus 35 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g 114 (335)
T 3dls_A 35 GAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSG 114 (335)
T ss_dssp SSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTS
T ss_pred cCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCC
Confidence 46899999985 5688999999875431 12234455665543 2689999877
Q ss_pred -CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-
Q 041082 458 -SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ- 535 (639)
Q Consensus 458 -sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~- 535 (639)
+|.+++... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 115 ~~l~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~ 190 (335)
T 3dls_A 115 LDLFAFIDRH-PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFC 190 (335)
T ss_dssp CBHHHHHHTC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEEC
T ss_pred ccHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccC
Confidence 998888643 35899999999999999999999 568999999999999999999999999999876543321000
Q ss_pred --------------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCC-cceeeeccccccccccccchHHHHHHH
Q 041082 536 --------------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPIS-VMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 --------------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| +-|..+.+.+....|.. ..+.+....... ......+
T Consensus 191 gt~~y~aPE~~~~~~~~~~~~Diw-----------slG~il~el~~g~~pf~~~~~~~~~~~~~~--------~~~~~~l 251 (335)
T 3dls_A 191 GTIEYCAPEVLMGNPYRGPELEMW-----------SLGVTLYTLVFEENPFCELEETVEAAIHPP--------YLVSKEL 251 (335)
T ss_dssp SCGGGCCHHHHTTCCBCSHHHHHH-----------HHHHHHHHHHHSSCSCSSGGGGTTTCCCCS--------SCCCHHH
T ss_pred CCccccChhhhcCCCCCCCcccch-----------hHHHHHHHHHhCCCchhhHHHHHhhccCCC--------cccCHHH
Confidence 0012245555 33333333332222221 111111111100 0112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++..|++.+|++|||+.|+++.
T Consensus 252 ~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 252 MSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HHHHHHHccCChhhCcCHHHHhcC
Confidence 778889999999999999999874
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=176.30 Aligned_cols=118 Identities=24% Similarity=0.357 Sum_probs=97.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+.+++ .+|+||+++|+|..+
T Consensus 26 G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~ 105 (384)
T 4fr4_A 26 GSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYH 105 (384)
T ss_dssp CTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHH
Confidence 568999999865 578899999865432 22345556666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+.. ...+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+|+.+..
T Consensus 106 l~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 106 LQQ-NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 875 345899999999999999999999 66899999999999999999999999999987654
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-19 Score=179.57 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=131.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH---------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK---------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+...... ....+..|+..++ .+|+||+++|+|.++
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 119 (327)
T 3lm5_A 40 GKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSL 119 (327)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGG
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHH
Confidence 468899999865 5899999998654322 2345555555532 268999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----c
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----T 534 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~ 534 (639)
+... ...+++..+..++.+++.||+||| ..+|+||||||.||+++. ++.+||+|||+++......... +
T Consensus 120 ~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt 196 (327)
T 3lm5_A 120 CLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGT 196 (327)
T ss_dssp GSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCC
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCC
Confidence 8653 356899999999999999999999 568999999999999998 7899999999998765432110 0
Q ss_pred ----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
....+.+.||| | ||+.|.... .......-+...... ..+ +....
T Consensus 197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~-----~~~----------~~~~~ 259 (327)
T 3lm5_A 197 PEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE--DNQETYLNISQVNVD-----YSE----------ETFSS 259 (327)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC-----CCT----------TTTTT
T ss_pred cCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CchHHHHHHHhcccc-----cCc----------hhhcc
Confidence 01122367777 5 777776421 111110001100000 000 00112
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...+.+++..|++.+|++|||+.|+++
T Consensus 260 ~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 260 VSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 2334677889999999999999999975
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=177.31 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=134.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+...... ....+..|+..++ .+|+||+++++|.++
T Consensus 45 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 124 (309)
T 2h34_A 45 GGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAM 124 (309)
T ss_dssp CSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHH
T ss_pred CCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHH
Confidence 468899999865 6789999998654322 2345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 125 l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~ 200 (309)
T 2h34_A 125 LRRQ-GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLY 200 (309)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcC
Confidence 8642 35899999999999999999999 568999999999999999999999999998766433211
Q ss_pred --ccc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 533 --FTQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 533 --~~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
.+. ...+.++||| | ||+.|..... ...+...+....+. +. .......
T Consensus 201 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~-------~~---------~~~~~~~ 262 (309)
T 2h34_A 201 YMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ--LSVMGAHINQAIPR-------PS---------TVRPGIP 262 (309)
T ss_dssp GCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH--HHHHHHHHHSCCCC-------GG---------GTSTTCC
T ss_pred ccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch--HHHHHHHhccCCCC-------cc---------ccCCCCC
Confidence 000 1112367777 5 7777764210 00111111110000 00 0011122
Q ss_pred HHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhHH
Q 041082 598 SFVFNLAMECTAESPKQRI-NAKESVTRLLKIRD 630 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP-~m~~v~~~l~~~~~ 630 (639)
..+.+++.+|++.+|++|| ++.++++.|+.+..
T Consensus 263 ~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~ 296 (309)
T 2h34_A 263 VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA 296 (309)
T ss_dssp THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence 3466788899999999999 99999999998754
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=182.91 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=129.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH-------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM-------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gsL~ 460 (639)
.++|.||++... .+..+|+|++... ..+..|+..+ ..+||||+++|+|.
T Consensus 73 G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~ 147 (400)
T 1nxk_A 73 GINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELF 147 (400)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHH
Confidence 468999999864 5789999998632 1223333321 13689999999999
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc---
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+++... ...+++..+..|+.++++||+||| ..+|+||||||.||+++. ++.+||+|||+++.........
T Consensus 148 ~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~ 224 (400)
T 1nxk_A 148 SRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC 224 (400)
T ss_dssp HHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCC
Confidence 999763 346899999999999999999999 568999999999999997 7899999999998764322110
Q ss_pred -------cc----cccccccccc--c-------CCCCCCCccCCCcc--chHHHHHhhCCCCcceeeecccccccccccc
Q 041082 534 -------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEM--TLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 534 -------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~--~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
+. ...+.++||| | ||+.|......... .+...+.... .+.-.+
T Consensus 225 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~----~~~~~~----------- 289 (400)
T 1nxk_A 225 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ----YEFPNP----------- 289 (400)
T ss_dssp --CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC----CCCCTT-----------
T ss_pred CCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc----ccCCCc-----------
Confidence 00 1122367888 6 78777654221110 1111111100 000000
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
........+.+++.+|++.+|++|||+.||++.
T Consensus 290 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 290 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 001122356778899999999999999999863
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-18 Score=171.47 Aligned_cols=193 Identities=22% Similarity=0.264 Sum_probs=133.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +|..+++|.+..... .....+..|+..++ .+|+||+++++|.++
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 101 (276)
T 2h6d_A 22 GTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDY 101 (276)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHH
T ss_pred CCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHH
Confidence 467899999875 688999999865432 22345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+++||||||+||+++.++.+|++|||+++........
T Consensus 102 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~ 177 (276)
T 2h6d_A 102 ICKH-GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 177 (276)
T ss_dssp HHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------C
T ss_pred Hhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCcccc
Confidence 8643 35889999999999999999999 557999999999999999999999999999876543211
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
.+. ...+.++||| | ||+.|.... ....+.+.+...... + + .....
T Consensus 178 aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~-----~-~-------------~~~~~ 236 (276)
T 2h6d_A 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE--HVPTLFKKIRGGVFY-----I-P-------------EYLNR 236 (276)
T ss_dssp CTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHCCCC-----C-C-------------TTSCH
T ss_pred CHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC--cHHHHHHHhhcCccc-----C-c-------------hhcCH
Confidence 000 0113468888 6 777776531 111111111110000 0 0 01123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||++.||++.
T Consensus 237 ~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 237 SVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhC
Confidence 46678899999999999999999873
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=172.82 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++++|.++
T Consensus 26 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 105 (294)
T 2rku_A 26 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLEL 105 (294)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred cCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHH
Confidence 468899999875 468899998865431 22345666666643 278999999999987
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc--------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-------- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-------- 534 (639)
+.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++..........
T Consensus 106 ~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y 181 (294)
T 2rku_A 106 HKR-RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNY 181 (294)
T ss_dssp HHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSS
T ss_pred HHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCc
Confidence 754 235899999999999999999999 56899999999999999999999999999987643221100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ...+.......... .+ +.....
T Consensus 182 ~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~------~~----------~~~~~~ 240 (294)
T 2rku_A 182 IAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNEY------SI----------PKHINP 240 (294)
T ss_dssp CCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCC------CC----------CTTSCH
T ss_pred CCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhhccC------CC----------ccccCH
Confidence 01123367888 6 777776531 11111111111100 00 001112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+.+++.+|++.+|++||++.|+++.
T Consensus 241 ~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 241 VAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp HHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred HHHHHHHHHcccChhhCcCHHHHhhC
Confidence 46678889999999999999999863
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=174.99 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=105.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..||||++..... ....+..|+..++ .+||||++ |+|
T Consensus 65 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L 142 (382)
T 2vx3_A 65 GSFGQVVKAYDRVEQEWVAIKIIKNKKA-FLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNL 142 (382)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEECSSHH-HHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBH
T ss_pred cCCEEEEEEEEcCCCcEEEEEEEeccHH-HHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCH
Confidence 468999999864 578999999864321 1233333333311 26899996 599
Q ss_pred hhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeeccccccccccccCCC--cc
Q 041082 460 EKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAKLLLKEDQS--FT 534 (639)
Q Consensus 460 ~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla~~~~~~~~~--~~ 534 (639)
.+++.... ..+++..+..++.+++.||+|||.. ..+|+||||||+||+++ +++.+||+|||+|+........ .+
T Consensus 143 ~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t 221 (382)
T 2vx3_A 143 YDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQS 221 (382)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSC
T ss_pred HHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCC
Confidence 98887533 4589999999999999999999942 46799999999999994 5788999999999876543221 00
Q ss_pred ----------ccccccccccc--c-------CCCCCCCc
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 222 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 222 RFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred ccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 01123479999 7 89988763
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=176.46 Aligned_cols=200 Identities=18% Similarity=0.208 Sum_probs=126.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------HhhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------KKLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------~~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++.... .....+....... ..+|+||+++|+|.+++.
T Consensus 40 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~ 118 (336)
T 3fhr_A 40 GVNGKVLECFHRRTGQKCALKLLYDSP-KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQ 118 (336)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEESSH-HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEecCcH-HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHH
Confidence 468999999875 68999999986432 1222222222221 137899999999999987
Q ss_pred cCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc-------
Q 041082 465 SSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 465 ~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
... ..+++..+..++.++++||+||| ..+|+||||||.||+++. ++.+||+|||+++.........
T Consensus 119 ~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y 195 (336)
T 3fhr_A 119 ERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYY 195 (336)
T ss_dssp TC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCc
Confidence 633 46999999999999999999999 568999999999999976 4559999999998664332110
Q ss_pred --cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 534 --TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 534 --~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
+. ...+.++||| | ||+.|........ ................-. ........
T Consensus 196 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 262 (336)
T 3fhr_A 196 VAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA--ISPGMKRRIRLGQYGFPN-----------PEWSEVSE 262 (336)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCT-----------TTSTTCCH
T ss_pred cChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh--hhhhHHHhhhccccccCc-----------hhhccCCH
Confidence 00 0112367888 6 8888865321111 000000000000000000 00112233
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++..|++.+|++|||+.|+++
T Consensus 263 ~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 263 DAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHCCCChhHCcCHHHHhc
Confidence 5677889999999999999999986
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=176.49 Aligned_cols=202 Identities=23% Similarity=0.297 Sum_probs=124.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++.. ..+..+|+|.+..... .....+..|+..++ .+|+||+++|+|.+++.
T Consensus 26 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 105 (303)
T 2vwi_A 26 GATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIK 105 (303)
T ss_dssp --CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHH
T ss_pred ccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHH
Confidence 46789999975 4678999998865432 22334445554422 37899999999999885
Q ss_pred c-------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 465 S-------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 465 ~-------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~ 182 (303)
T 2vwi_A 106 HIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 182 (303)
T ss_dssp HHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC----------
T ss_pred HHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhh
Confidence 3 2345899999999999999999999 568999999999999999999999999999765432100
Q ss_pred -----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc-ceeeeccccccc
Q 041082 533 -----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDVNLLSME 586 (639)
Q Consensus 533 -----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ............+... ....++....
T Consensus 183 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (303)
T 2vwi_A 183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP--PMKVLMLTLQNDPPSLETGVQDKEMLK-- 258 (303)
T ss_dssp -----CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC--GGGHHHHHHTSSCCCTTC-----CCCC--
T ss_pred hcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc--hhhHHHHHhccCCCccccccccchhhh--
Confidence 000 1123478888 6 8888875421 1111111111111111 1111111111
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....+.+++.+|++.+|++||++.|+++
T Consensus 259 --------~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 259 --------KYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp --------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred --------hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 11234677888999999999999999986
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=177.32 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=126.8
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++.... +..+|+|++..... .....+..|...+. .+|+||+++|+|.+
T Consensus 31 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 110 (353)
T 2i0e_A 31 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 110 (353)
T ss_dssp ETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHH
Confidence 4689999998754 78999999875432 22234445554432 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++...........
T Consensus 111 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~ 186 (353)
T 2i0e_A 111 HIQQV-GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPD 186 (353)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGG
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCcc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | +|+.|.... +-.+.......... .. +....
T Consensus 187 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~s 245 (353)
T 2i0e_A 187 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHNV------AY----------PKSMS 245 (353)
T ss_dssp GCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTSC
T ss_pred ccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CCCCC
Confidence 0112367888 6 787776531 11111111111100 00 00112
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.+++.+|++.+|++||++
T Consensus 246 ~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 246 KEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHHHHHHTCSCTTSCTTC
T ss_pred HHHHHHHHHHhhcCHHHcCCC
Confidence 346678889999999999964
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=176.72 Aligned_cols=195 Identities=20% Similarity=0.247 Sum_probs=130.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|.+....... ..|++.+. .+|+||+++|+|.+++.
T Consensus 33 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~----~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~ 108 (342)
T 2qr7_A 33 GSYSVCKRCIHKATNMEFAVKIIDKSKRDP----TEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKIL 108 (342)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEETTTCCC----HHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEcccCCh----HHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHH
Confidence 468899999865 57899999987543322 22333321 37899999999999886
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC----cceeeccccccccccccCCCcccc----
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN----MVAHLSDFGMAKLLLKEDQSFTQN---- 536 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~----~~~~i~dfgla~~~~~~~~~~~~~---- 536 (639)
.. ..+++.....++.+++.||+||| ..+|+||||||+||++.++ +.+||+|||+++............
T Consensus 109 ~~-~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~ 184 (342)
T 2qr7_A 109 RQ-KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTA 184 (342)
T ss_dssp TC-TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCS
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCc
Confidence 43 45899999999999999999999 5689999999999998433 359999999998765432110000
Q ss_pred -----------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 537 -----------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 537 -----------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
..+.++||| | ||+.|..... .....+.......... . +.... ....
T Consensus 185 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~~~~i~~~~~-~-~~~~~----------~~~~ 250 (342)
T 2qr7_A 185 NFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP--DDTPEEILARIGSGKF-S-LSGGY----------WNSV 250 (342)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST--TSCHHHHHHHHHHCCC-C-CCSTT----------TTTS
T ss_pred cccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC--cCCHHHHHHHHccCCc-c-cCccc----------cccC
Confidence 012378999 7 8888876321 1122222211111100 0 00000 0111
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.++...|++.+|++||++.||++
T Consensus 251 s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 251 SDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 234667888999999999999999885
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=178.81 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=98.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++.... ......+..|..++. ++||||+++|+|.++
T Consensus 72 G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~ 151 (412)
T 2vd5_A 72 GAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTL 151 (412)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHH
Confidence 468999999874 68999999986432 122344566665532 378999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+......+++.....++.+++.||+||| ..+|+||||||+|||+|.++.+||+|||+++....
T Consensus 152 l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~ 214 (412)
T 2vd5_A 152 LSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA 214 (412)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheeccC
Confidence 9764456899999999999999999999 66899999999999999999999999999987654
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=178.24 Aligned_cols=143 Identities=25% Similarity=0.273 Sum_probs=105.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|++.... .....+..|...++ .+|+||+ +|+|.
T Consensus 46 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~ 123 (360)
T 3llt_A 46 GTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLY 123 (360)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHH
T ss_pred cCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHH
Confidence 46899999987 467899999986422 12233444444422 2688999 88999
Q ss_pred hccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------------Ccc
Q 041082 461 KCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------------NMV 514 (639)
Q Consensus 461 ~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------------~~~ 514 (639)
+++.... ..+++.....++.+++.||+||| ..+|+||||||+||+++. ++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (360)
T 3llt_A 124 EIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTG 200 (360)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCC
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCC
Confidence 9887533 35899999999999999999999 668999999999999975 789
Q ss_pred eeeccccccccccccCCCc--c----------ccccccccccc--c-------CCCCCCCc
Q 041082 515 AHLSDFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 515 ~~i~dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
+||+|||+|+......... + ....+.++||| | ||+.|...
T Consensus 201 ~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 201 IKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp EEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred EEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence 9999999998654332110 0 01123478999 6 88888753
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-18 Score=176.40 Aligned_cols=116 Identities=26% Similarity=0.336 Sum_probs=93.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..++. .+|+||+++|+|..
T Consensus 63 G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~ 142 (396)
T 4dc2_A 63 GSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMF 142 (396)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHH
Confidence 568999999875 578999999875432 12233444544432 27899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+|+..
T Consensus 143 ~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~ 203 (396)
T 4dc2_A 143 HMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 203 (396)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeec
Confidence 88643 35899999999999999999999 568999999999999999999999999999863
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-18 Score=175.15 Aligned_cols=212 Identities=23% Similarity=0.250 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-----hhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-----AFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++... +|..+|+|.+...... ....+..|+..++ .+|+||+++ +|.
T Consensus 21 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~ 99 (346)
T 1ua2_A 21 GQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLE 99 (346)
T ss_dssp ETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHH
T ss_pred cCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHH
Confidence 468899999875 5889999998754321 1234556666643 268899985 788
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF------- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~------- 533 (639)
..+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~ 176 (346)
T 1ua2_A 100 VIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTR 176 (346)
T ss_dssp HHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCC
T ss_pred HHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccc
Confidence 877765556888899999999999999999 5679999999999999999999999999998764322110
Q ss_pred ----cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCC--Cccee---eecccccccccc
Q 041082 534 ----TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPI--SVMEV---VDVNLLSMEDKY 589 (639)
Q Consensus 534 ----~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~--~~~~~---~d~~l~~~~~~~ 589 (639)
+. ...+.++||| | +|+.|..... ....+....... .+. ...+. .+..........
T Consensus 177 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (346)
T 1ua2_A 177 WYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS-DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI 255 (346)
T ss_dssp TTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCC
T ss_pred cccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCC
Confidence 00 1123367888 6 7777654311 111111111111 111 00000 000000000000
Q ss_pred c--cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 F--TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~--~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .........+.+++.+|++.+|++|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 256 PLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp CHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred ChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 000112346788999999999999999999986
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=175.94 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=135.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... +|..+|+|.+...... ....+..|+..++. +|+||+++|+|
T Consensus 23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L 102 (321)
T 2a2a_A 23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGEL 102 (321)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred cCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcH
Confidence 468899999865 5789999998654321 23456677766432 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++ .+|++|||+++.........
T Consensus 103 ~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 178 (321)
T 2a2a_A 103 FDFLAQ-KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNI 178 (321)
T ss_dssp HHHHHT-CSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccccccc
Confidence 999874 345899999999999999999999 56899999999999999887 79999999998765432110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... .-.+......... ..+++...
T Consensus 179 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~--~~~~~~~~--------- 242 (321)
T 2a2a_A 179 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITSVS--YDFDEEFF--------- 242 (321)
T ss_dssp CSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTC--CCCCHHHH---------
T ss_pred CCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhcc--cccChhhh---------
Confidence 0 01123367888 6 777776421 1111111111100 00111110
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++|||+.|+++
T Consensus 243 -~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 243 -SHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -TTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -cccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 111234677889999999999999999986
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=189.39 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=128.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++... .+..+|||++.... ......+..|..++. ++||||+++|+|.+
T Consensus 352 G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~ 431 (674)
T 3pfq_A 352 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY 431 (674)
T ss_dssp TTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHH
Confidence 468999999865 57889999987542 122334444544422 37899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++..+..++.+|+.||+||| ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 432 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~ 507 (674)
T 3pfq_A 432 HIQQV-GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPD 507 (674)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSS
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCc
Confidence 98753 35899999999999999999999 668999999999999999999999999999864322211000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.+.|+| | ||+.|.... +-.+......... +. .+....
T Consensus 508 Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-----~~~~~~~~i~~~~--------~~--------~p~~~s 566 (674)
T 3pfq_A 508 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHN--------VA--------YPKSMS 566 (674)
T ss_dssp SCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHSSC--------CC--------CCTTSC
T ss_pred ccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCC--------CC--------CCccCC
Confidence 0112367787 6 777776531 1112221111111 00 001112
Q ss_pred HHHHHHHhhccCCCCCCCCCH
Q 041082 598 SFVFNLAMECTAESPKQRINA 618 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m 618 (639)
..+.+++..|++.+|++||++
T Consensus 567 ~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 567 KEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHHHHHHHHSCSSSTTCTTC
T ss_pred HHHHHHHHHHccCCHHHCCCC
Confidence 346678889999999999998
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=183.67 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=134.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 195 G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~ 274 (576)
T 2acx_A 195 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFH 274 (576)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHH
Confidence 468999999874 689999999865432 22334556666643 278999999999998
Q ss_pred cccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----cc--
Q 041082 463 LYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQ-- 535 (639)
Q Consensus 463 l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~-- 535 (639)
+... ...+++..+..++.+|+.||+||| ..+|+||||||+||+++.++.+||+|||+|+......... +.
T Consensus 275 l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y 351 (576)
T 2acx_A 275 IYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGY 351 (576)
T ss_dssp HHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGG
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccc
Confidence 8753 335899999999999999999999 5689999999999999999999999999998765432110 00
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHh--hCCCCcceeeeccccccccccccchHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND--LLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++|+| | ||+.|....... ....+.... ..+... . ...
T Consensus 352 ~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~-~~~~~i~~~i~~~~~~~----p--------------~~~ 412 (576)
T 2acx_A 352 MAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK-IKREEVERLVKEVPEEY----S--------------ERF 412 (576)
T ss_dssp CCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC-CCHHHHHHHHHHCCCCC----C--------------TTS
T ss_pred cCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc-hhHHHHHHHhhcccccC----C--------------ccC
Confidence 0112367888 6 888887542111 111111111 011100 0 011
Q ss_pred HHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
...+.+++.+|++.+|++|| ++.||.+
T Consensus 413 s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 413 SPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 23466788899999999999 6777764
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-18 Score=177.81 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=109.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+||||+++|+|.+++.
T Consensus 44 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 123 (360)
T 3eqc_A 44 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 123 (360)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHH
Confidence 468999999875 678999999865422 22345666666543 27899999999999986
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---c------c-
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---F------T- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~------~- 534 (639)
.. ..+++..+.+++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........ . +
T Consensus 124 ~~-~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE 200 (360)
T 3eqc_A 124 KA-GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 200 (360)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHH
T ss_pred Hc-CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHH
Confidence 53 3588999999999999999999942 26999999999999999999999999999755322111 0 0
Q ss_pred ---ccccccccccc--c-------CCCCCCCc
Q 041082 535 ---QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ---~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 201 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 232 (360)
T 3eqc_A 201 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 232 (360)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred HHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 01123478999 6 89888753
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-19 Score=185.80 Aligned_cols=190 Identities=16% Similarity=0.057 Sum_probs=122.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHHhhh--------h-----------------------
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMKKLV--------L----------------------- 451 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~~Lv--------~----------------------- 451 (639)
.+||.||++.. ..|..+|||++...... ..+.+..|...++.+- +
T Consensus 89 G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (413)
T 3dzo_A 89 EDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRV 168 (413)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC-------
T ss_pred CCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccc
Confidence 46899999994 56899999998733221 1344555554433220 0
Q ss_pred ---------------hcCCCCCchhccc------cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec
Q 041082 452 ---------------EYMPHGSLEKCLY------SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG 510 (639)
Q Consensus 452 ---------------ey~~~gsL~~~l~------~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~ 510 (639)
..+..|+|.+++. .....++|..+..|+.++++||+||| ..+|+||||||+|||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrDiKp~NILl~ 245 (413)
T 3dzo_A 169 RLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLD 245 (413)
T ss_dssp --------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred cCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcccceEEEe
Confidence 0123456666652 22345788999999999999999999 66899999999999999
Q ss_pred CCcceeeccccccccccccCCC-------ccc--------------cccccccccc--c-------CCCCCCCccCCCcc
Q 041082 511 NNMVAHLSDFGMAKLLLKEDQS-------FTQ--------------NTNTCHHRIY--G-------TRRNPQMNFFSGEM 560 (639)
Q Consensus 511 ~~~~~~i~dfgla~~~~~~~~~-------~~~--------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~ 560 (639)
.++.+||+|||+++........ .+. ...+.++||| | ||+.|....-
T Consensus 246 ~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~---- 321 (413)
T 3dzo_A 246 QRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA---- 321 (413)
T ss_dssp TTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTG----
T ss_pred cCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcc----
Confidence 9999999999998865433111 000 0012266777 5 6666654211
Q ss_pred chHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 561 TLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
..+.++..+... ......+.+++.+|++.+|++||++.|+++.
T Consensus 322 -------------~~~~~~~~~~~~--------~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 322 -------------ALGGSEWIFRSC--------KNIPQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp -------------GGSCSGGGGSSC--------CCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred -------------hhhhHHHHHhhc--------ccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 011111111110 0112347778889999999999999998753
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-18 Score=175.12 Aligned_cols=192 Identities=22% Similarity=0.299 Sum_probs=122.5
Q ss_pred CCcCcceEEEe----cCCceeeeEEechhh----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI----QDGMKVAVKVFDLQY----ERAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l----~~g~~vavK~l~~~~----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+.+++ .+|+||+++|+
T Consensus 28 G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~ 107 (327)
T 3a62_A 28 GGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGE 107 (327)
T ss_dssp ETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEE
T ss_pred CCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCc
Confidence 46899999886 468899999986432 122334555665543 37899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----- 533 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----- 533 (639)
|.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++.........
T Consensus 108 L~~~l~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g 183 (327)
T 3a62_A 108 LFMQLERE-GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCG 183 (327)
T ss_dssp HHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSS
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCC
Confidence 99988642 35788889999999999999999 5689999999999999999999999999997643221100
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
+ ....+.++||| | ||+.|.... ...+.+........ .+ +.
T Consensus 184 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~------~~----------p~ 242 (327)
T 3a62_A 184 TIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-----NRKKTIDKILKCKL------NL----------PP 242 (327)
T ss_dssp CCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTCC------CC----------CT
T ss_pred CcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCC------CC----------CC
Confidence 0 01122367787 5 777776431 11111111110000 00 01
Q ss_pred HHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
.....+.+++.+|++.+|++|| ++.|+++
T Consensus 243 ~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 243 YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 1123466788899999999999 6667654
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-18 Score=175.49 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+.... ......+..|+..++ .+|+||+++++|.++
T Consensus 52 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 131 (335)
T 2owb_A 52 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLEL 131 (335)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHH
Confidence 468899999875 46889999986543 123345666666643 268999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------- 535 (639)
+.. ...+++..+..++.++++||+||| ..+|+|||||++||+++.++.+||+|||+++...........
T Consensus 132 ~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y 207 (335)
T 2owb_A 132 HKR-RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNY 207 (335)
T ss_dssp HHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSS
T ss_pred Hhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccc
Confidence 754 245899999999999999999999 568999999999999999999999999999876432211000
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... ...+......... ..+ +.....
T Consensus 208 ~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~------~~~----------~~~~~~ 266 (335)
T 2owb_A 208 IAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNE------YSI----------PKHINP 266 (335)
T ss_dssp CCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTC------CCC----------CTTSCH
T ss_pred cCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHhcCC------CCC----------CccCCH
Confidence 1123367888 6 777776431 1111111100000 000 001112
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++||++.|+++
T Consensus 267 ~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 267 VAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHHHccCChhHCcCHHHHhc
Confidence 4567888999999999999999986
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=173.61 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=127.4
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++...++..+|+|.+.... ......+..|+..++. +|+| +.+|+|.++
T Consensus 39 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~ 117 (313)
T 3cek_A 39 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSW 117 (313)
T ss_dssp CSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHH
T ss_pred CCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHH
Confidence 46889999998889999999986543 2233456666655332 4567 456788888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---------- 532 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---------- 532 (639)
+... ..+++..+..++.++++||+||| ..+|+||||||+||++++ +.+||+|||+++........
T Consensus 118 l~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~ 192 (313)
T 3cek_A 118 LKKK-KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTV 192 (313)
T ss_dssp HHHC-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCC
Confidence 8643 36889999999999999999999 568999999999999964 88999999999876432210
Q ss_pred ---ccc---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccc
Q 041082 533 ---FTQ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM 585 (639)
Q Consensus 533 ---~~~---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~ 585 (639)
.+. ...+.++||| | ||+.|....... ...+.... ++.....
T Consensus 193 ~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~----~~~~~~~~--------~~~~~~~ 260 (313)
T 3cek_A 193 NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ----ISKLHAII--------DPNHEIE 260 (313)
T ss_dssp GGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH----HHHHHHHH--------CTTSCCC
T ss_pred CcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH----HHHHHHHH--------hcccccC
Confidence 000 0122367887 6 777776532111 11111111 1110000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
. +..+...+.+++.+|++.+|++||++.|+++.
T Consensus 261 ~------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 261 F------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp C------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred C------cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 0 00112346678889999999999999999863
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-18 Score=172.12 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=132.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---------hhhhhHHHHHHHHH---------------------hhhhhcCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---------RAFKSFDVACDMMK---------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---------~~~~~f~~e~~~~~---------------------~Lv~ey~~ 455 (639)
.++|.||++... .|..+|+|.++.... .....+..|+..++ .+|+||++
T Consensus 28 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~ 107 (298)
T 1phk_A 28 GVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMK 107 (298)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred CCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccC
Confidence 457899999875 578999999865431 11234455555532 26899999
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
+|+|.+++... ..+++..+..++.+++.||+||| ..+++||||||+||+++.++.+||+|||+++.........
T Consensus 108 ~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~ 183 (298)
T 1phk_A 108 KGELFDYLTEK-VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 183 (298)
T ss_dssp TCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCC
T ss_pred CCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccc
Confidence 99999988642 35899999999999999999999 6689999999999999999999999999998764332110
Q ss_pred --------cc----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 534 --------TQ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 --------~~----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
+. ...+.++||| | ||+.|.... ....+...+..... ....+
T Consensus 184 ~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~----~~~~~------ 251 (298)
T 1phk_A 184 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR--KQMLMLRMIMSGNY----QFGSP------ 251 (298)
T ss_dssp CSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCC----CCCTT------
T ss_pred cCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc--cHHHHHHHHhcCCc----ccCcc------
Confidence 00 0112367777 5 777766421 11111111111000 00000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.|+++
T Consensus 252 -----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 252 -----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp -----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred -----cccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 01122345778889999999999999999985
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=171.87 Aligned_cols=193 Identities=22% Similarity=0.274 Sum_probs=130.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|++..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~ 99 (279)
T 3fdn_A 20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRE 99 (279)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHH
Confidence 468899999765 467899999864332 22345666666643 368999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---c-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---T----- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~----- 534 (639)
+... ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.++|+|||++.......... +
T Consensus 100 l~~~-~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~a 175 (279)
T 3fdn_A 100 LQKL-SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLP 175 (279)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCC
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccC
Confidence 8642 35889999999999999999999 6789999999999999999999999999986554322110 0
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | +|+.|.... ...+........ ... .+......+
T Consensus 176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~------~~~----------~~~~~~~~~ 234 (279)
T 3fdn_A 176 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----TYQETYKRISRV------EFT----------FPDFVTEGA 234 (279)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHT------CCC----------CCTTSCHHH
T ss_pred HhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----cHHHHHHHHHhC------CCC----------CCCcCCHHH
Confidence 01112367777 5 676665421 111111100000 000 001112345
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.+++.+|++.+|++||++.||++.
T Consensus 235 ~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 235 RDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred HHHHHHHhccChhhCCCHHHHhhC
Confidence 678899999999999999999874
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-18 Score=177.48 Aligned_cols=211 Identities=21% Similarity=0.197 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .|..+|+|++...... ....+..|+..++ .+|+||++++++..+.
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 115 (331)
T 4aaa_A 36 GSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLE 115 (331)
T ss_dssp GTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH
T ss_pred cCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHH
Confidence 468999999875 4789999988543321 2334556666643 2689999998888765
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------- 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------- 532 (639)
.. ...+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 116 ~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~ 191 (331)
T 4aaa_A 116 LF-PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYR 191 (331)
T ss_dssp HS-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTC
T ss_pred hh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCcccc
Confidence 43 335899999999999999999999 568999999999999999999999999999765432111
Q ss_pred ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCC-----------CC-cceeeeccccccc
Q 041082 533 FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLP-----------IS-VMEVVDVNLLSME 586 (639)
Q Consensus 533 ~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~-----------~~-~~~~~d~~l~~~~ 586 (639)
.+. ...+.++||| | ||+.|..... ....+...+..... .. ......+.+....
T Consensus 192 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 4aaa_A 192 APELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS-DIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKERE 270 (331)
T ss_dssp CHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCC
T ss_pred CcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccc
Confidence 000 1123478998 6 8888865321 11111111110000 00 0001111111000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .....+.....+.+++.+|++.+|++|||+.|+++
T Consensus 271 ~-~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 271 P-LERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp C-HHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred h-hhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0 00001123456788999999999999999999986
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-18 Score=170.21 Aligned_cols=192 Identities=14% Similarity=0.011 Sum_probs=132.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|.+..... .....+..|...++ .+||||+++++|.++
T Consensus 42 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~ 121 (286)
T 3uqc_A 42 VPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEV 121 (286)
T ss_dssp STTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHH
T ss_pred cCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHH
Confidence 568899999875 489999999875532 22345666665533 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccccccccc
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHH 542 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~~~~~~ 542 (639)
+... ....+..+|+.+++.||+||| ..+|+||||||.||+++.++.+||+++|... ..+.++
T Consensus 122 l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~------------~~~~~~ 183 (286)
T 3uqc_A 122 ADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMP------------DANPQD 183 (286)
T ss_dssp HTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCT------------TCCHHH
T ss_pred HhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccC------------CCCchh
Confidence 8542 345567889999999999999 5689999999999999999999999776543 123478
Q ss_pred ccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCC
Q 041082 543 RIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPK 613 (639)
Q Consensus 543 dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~ 613 (639)
||| | ||+.|....-.... +. ........+...+. .........+.+++.+|++.+|+
T Consensus 184 Di~slG~il~elltg~~Pf~~~~~~~~-~~----~~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~~l~~dP~ 249 (286)
T 3uqc_A 184 DIRGIGASLYALLVNRWPLPEAGVRSG-LA----PAERDTAGQPIEPA---------DIDRDIPFQISAVAARSVQGDGG 249 (286)
T ss_dssp HHHHHHHHHHHHHHSEECSCCCSBCCC-SE----ECCBCTTSCBCCHH---------HHCTTSCHHHHHHHHHHHCTTSS
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCcchh-hH----HHHHHhccCCCChh---------hcccCCCHHHHHHHHHHcccCCc
Confidence 999 6 78877653211100 00 00000000000000 00012234577888999999999
Q ss_pred CCCCHHHHHHHHHHhHHH
Q 041082 614 QRINAKESVTRLLKIRDL 631 (639)
Q Consensus 614 ~RP~m~~v~~~l~~~~~~ 631 (639)
+| |+.|+++.|+++...
T Consensus 250 ~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 250 IR-SASTLLNLMQQATAV 266 (286)
T ss_dssp CC-CHHHHHHHHHHHHC-
T ss_pred cC-CHHHHHHHHHHHhcc
Confidence 99 999999999987643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=155.52 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=105.6
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..|..|+.+++|++|+|+
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4667777777776 445 5777777777777777654 33467777777777777777777667777777777777777
Q ss_pred cccCccccCccccCCCCCCEEecCCCC-CCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNN-LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
+|++++..|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|.+.+.. .+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-------------------~~-~l~~l~~L~~L~l~~n~i~~~~--~l~ 178 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-------------------IM-PLKTLPELKSLNIQFDGVHDYR--GIE 178 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-------------------CG-GGGGCSSCCEEECTTBCCCCCT--TGG
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-------------------cH-hhcCCCCCCEEECCCCCCcChH--Hhc
Confidence 777777666677777767666666665 443 33 4667788888888888887643 577
Q ss_pred CCCCCCEEEccCCCCCC
Q 041082 212 NLINLKRLNLYDNYLTS 228 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~ 228 (639)
.+++|++|++++|++.+
T Consensus 179 ~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEEECBC----
T ss_pred cCCCCCEEEeeCcccCC
Confidence 88888888888888754
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-18 Score=172.39 Aligned_cols=197 Identities=22% Similarity=0.244 Sum_probs=132.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--------hhhhhHHHHHHHHH-------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--------RAFKSFDVACDMMK-------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~-------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|||.+..... .....+..|+..++ .+|+||+++|+
T Consensus 21 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~ 100 (322)
T 2ycf_A 21 GACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGE 100 (322)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEE
T ss_pred CCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCceEEEEecCCCCc
Confidence 468999999864 578999999864321 11234666666643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCC----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQ---- 531 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~---- 531 (639)
|.+++.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++. +||+|||+++.......
T Consensus 101 L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 176 (322)
T 2ycf_A 101 LFDKVVG-NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTL 176 (322)
T ss_dssp THHHHST-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHH
T ss_pred HHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccc
Confidence 9988864 346899999999999999999999 568999999999999987654 99999999987643211
Q ss_pred ------Cccc-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 532 ------SFTQ-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 532 ------~~~~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
..+. ...+.++||| | ||+.|..... ....+...+...... ..+..
T Consensus 177 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~-----~~~~~------- 243 (322)
T 2ycf_A 177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR-TQVSLKDQITSGKYN-----FIPEV------- 243 (322)
T ss_dssp HSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTT-CSSCHHHHHHHTCCC-----CCHHH-------
T ss_pred cCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhCccc-----cCchh-------
Confidence 0010 1123367888 6 7777765321 122233322211100 00000
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 244 ---~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 244 ---WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp ---HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 1112345778899999999999999999985
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-19 Score=180.39 Aligned_cols=196 Identities=20% Similarity=0.296 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---hhhhHHHHHHHHH------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---AFKSFDVACDMMK------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---~~~~f~~e~~~~~------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .++..+|+|++...... ....+..|+..++ .+|+||+++|+
T Consensus 23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~ 102 (311)
T 3ork_A 23 GGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVT 102 (311)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEE
T ss_pred CCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCC
Confidence 46899999985 57899999998754322 2334555554411 58999999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---- 534 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---- 534 (639)
|.+++... ..+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++.+........
T Consensus 103 L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 178 (311)
T 3ork_A 103 LRDIVHTE-GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAA 178 (311)
T ss_dssp HHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---------------
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccc
Confidence 99998643 35899999999999999999999 56799999999999999999999999999987643321100
Q ss_pred --------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 535 --------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 535 --------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
....+.++||| | ||+.|.... .-.+......... ...+..
T Consensus 179 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~---~~~~~~--------- 241 (311)
T 3ork_A 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-----SPVSVAYQHVRED---PIPPSA--------- 241 (311)
T ss_dssp ---CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHCC---CCCHHH---------
T ss_pred cCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhcCC---CCCccc---------
Confidence 00112367887 6 777776421 1111111111110 000000
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++||++.+++.
T Consensus 242 ~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 242 RHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 00112345677889999999999998777664
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=164.92 Aligned_cols=163 Identities=23% Similarity=0.294 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccc
Q 041082 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQN 133 (639)
Q Consensus 54 v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (639)
++.++++++.+++.. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|++.+..| +..+++|++|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344566666666433 4667778888888888777 355 67777888888888888776544 77788888888888
Q ss_pred ccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccc
Q 041082 134 NFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209 (639)
Q Consensus 134 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 209 (639)
|++++. |. +.. ++|+.|+|++|.++++ .+++|+.|+|++|++++. | .+..+++|+.|++++|.+.+. ..
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 887753 32 222 6777777777777654 255666666666666543 2 455666666666666666655 44
Q ss_pred cCCCCCCCEEEccCCCCCCC
Q 041082 210 FGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+..+++|+.|++++|.++..
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 66666666666666666543
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-18 Score=172.62 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=134.2
Q ss_pred CCcCcceEEEe--cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI--QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l--~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .++..+|+|++.... .....+..|+..++ .+|+||+ +++
T Consensus 25 G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~ 102 (339)
T 1z57_A 25 GAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLS 102 (339)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCB
T ss_pred CCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCC
Confidence 46889999975 367899999986432 22234444444422 2678999 789
Q ss_pred chhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-------------------Ccceeec
Q 041082 459 LEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-------------------NMVAHLS 518 (639)
Q Consensus 459 L~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-------------------~~~~~i~ 518 (639)
|.+++.... ..+++..+..++.++++||+||| ..+|+||||||+||+++. ++.+||+
T Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 179 (339)
T 1z57_A 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVV 179 (339)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEEC
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEe
Confidence 998886533 46889999999999999999999 568999999999999987 6679999
Q ss_pred cccccccccccCCC--cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCc
Q 041082 519 DFGMAKLLLKEDQS--FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISV 574 (639)
Q Consensus 519 dfgla~~~~~~~~~--~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~ 574 (639)
|||+++........ .+ ....+.++||| | ||+.|.... ........+.... +...
T Consensus 180 Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~p~~~ 257 (339)
T 1z57_A 180 DFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH--DSKEHLAMMERILGPLPKHM 257 (339)
T ss_dssp CCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS--CHHHHHHHHHHHHCSCCHHH
T ss_pred eCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCCHHH
Confidence 99999875433211 00 01123478999 6 888887532 1111111111111 0000
Q ss_pred ------ceeeec-cccc---------------cccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 575 ------MEVVDV-NLLS---------------MEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 575 ------~~~~d~-~l~~---------------~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...++. .... ...........+...+.+++.+|++.+|++|||+.||++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 258 IQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000000 0000 000000112344567889999999999999999999975
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=170.27 Aligned_cols=211 Identities=23% Similarity=0.294 Sum_probs=134.0
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~~ 455 (639)
.++|.||++.. ..|..+|+|++...... ....+..|+..++ .+|+||++
T Consensus 28 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 107 (351)
T 3mi9_A 28 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 107 (351)
T ss_dssp CSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS
T ss_pred CCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC
Confidence 56899999987 46889999988544321 2234455655532 26889987
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--- 532 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--- 532 (639)
+ ++.+.+......+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+.+......
T Consensus 108 ~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 183 (351)
T 3mi9_A 108 H-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPN 183 (351)
T ss_dssp E-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCC
T ss_pred C-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhccccccccccccc
Confidence 4 777776655556899999999999999999999 568999999999999999999999999999876422110
Q ss_pred ------------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCcceeee-ccc
Q 041082 533 ------------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISVMEVVD-VNL 582 (639)
Q Consensus 533 ------------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~~~~~d-~~l 582 (639)
.+. ...+.++||| | ||+.|.... ........+.... +......++ ...
T Consensus 184 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 261 (351)
T 3mi9_A 184 RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN--TEQHQLALISQLCGSITPEVWPNVDNYEL 261 (351)
T ss_dssp CCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCGG
T ss_pred ccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCChhhccccccchh
Confidence 000 1123478888 6 888776532 1111111111111 111000000 000
Q ss_pred cccc---cccccchHHH------HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 583 LSME---DKYFTTKKQC------LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 583 ~~~~---~~~~~~~~~~------~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.... ........+. -..+.+++.+|++.+|++|||+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 262 YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp GTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 0000 0000011111 134778999999999999999999986
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-18 Score=177.51 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=133.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+|+||+++|+|.++
T Consensus 52 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~ 131 (350)
T 1rdq_E 52 GSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSH 131 (350)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence 468999999865 689999999865432 22345555666543 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T------ 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~------ 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 132 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aP 207 (350)
T 1rdq_E 132 LRRI-GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAP 207 (350)
T ss_dssp HHHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCH
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCH
Confidence 8753 35889999999999999999999 6689999999999999999999999999998765432210 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++|+| | ||+.|.... ...+.......... .. +......+.
T Consensus 208 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------~~----------p~~~~~~~~ 266 (350)
T 1rdq_E 208 EIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-----QPIQIYEKIVSGKV------RF----------PSHFSSDLK 266 (350)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------CC----------CTTCCHHHH
T ss_pred HHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-----CHHHHHHHHHcCCC------CC----------CCCCCHHHH
Confidence 01123367888 6 787776421 11111111111100 00 011123466
Q ss_pred HHHhhccCCCCCCCCC-----HHHHHH
Q 041082 602 NLAMECTAESPKQRIN-----AKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~-----m~~v~~ 623 (639)
++..+|++.+|++||+ +.||.+
T Consensus 267 ~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 267 DLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 7888999999999998 777764
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-18 Score=172.69 Aligned_cols=192 Identities=23% Similarity=0.256 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... +|..+|+|++..... .....+..|..+++ .+|+||+++|+|.++
T Consensus 17 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~ 96 (318)
T 1fot_A 17 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL 96 (318)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHH
Confidence 468999998864 689999999875432 22334555555533 278999999999999
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T------ 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~------ 534 (639)
+... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++......... +
T Consensus 97 l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aP 172 (318)
T 1fot_A 97 LRKS-QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAP 172 (318)
T ss_dssp HHHT-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCH
T ss_pred HHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCH
Confidence 8753 35889999999999999999999 6789999999999999999999999999998765432110 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++|+| | ||+.|..+. +..+......... +.- +......+.
T Consensus 173 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~i~~~~--------~~~--------p~~~~~~~~ 231 (318)
T 1fot_A 173 EVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-----NTMKTYEKILNAE--------LRF--------PPFFNEDVK 231 (318)
T ss_dssp HHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHCC--------CCC--------CTTSCHHHH
T ss_pred hHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC--------CCC--------CCCCCHHHH
Confidence 01122367888 6 777776431 1111111111110 000 001112466
Q ss_pred HHHhhccCCCCCCCC-----CHHHHHH
Q 041082 602 NLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
++..+|++.+|++|| ++.||.+
T Consensus 232 ~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 232 DLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 788899999999999 7888764
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=167.12 Aligned_cols=192 Identities=22% Similarity=0.249 Sum_probs=132.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... ++..+|+|.+..... .....+..|+..++ .+|+||+++|+|.++
T Consensus 25 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~ 104 (284)
T 2vgo_A 25 GKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKE 104 (284)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHH
Confidence 468899999875 567899999865432 22345666666643 268999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---cc-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FT----- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~----- 534 (639)
+... ..+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||++......... .+
T Consensus 105 l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~a 180 (284)
T 2vgo_A 105 LQKH-GRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLP 180 (284)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCC
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCC
Confidence 8643 35889999999999999999999 678999999999999999999999999998765432211 00
Q ss_pred -----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 535 -----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 535 -----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
....+.++||| | ||+.|.... ...+......... ... +......+
T Consensus 181 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~------~~~----------~~~~~~~~ 239 (284)
T 2vgo_A 181 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRIVNVD------LKF----------PPFLSDGS 239 (284)
T ss_dssp HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC------CCC----------CTTSCHHH
T ss_pred HHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHHhccc------cCC----------CCcCCHHH
Confidence 01123367887 5 777776421 1111111111110 000 01112346
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++..|++.+|++||++.|+++
T Consensus 240 ~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 240 KDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhhcCHhhCCCHHHHhh
Confidence 67888999999999999999986
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=180.72 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=131.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|+|++..... .....+..|..+++ .+||||+++|+|..+
T Consensus 196 G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~ 275 (543)
T 3c4z_A 196 GGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYH 275 (543)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHH
Confidence 468999999875 589999999965432 22345556666543 278999999999998
Q ss_pred cccC---CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc----
Q 041082 463 LYSS---NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ---- 535 (639)
Q Consensus 463 l~~~---~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~---- 535 (639)
+... ...+++.....++.+|+.||+||| ..+|+||||||.||+++.++.+||+|||+++.+.........
T Consensus 276 l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT 352 (543)
T 3c4z_A 276 IYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGT 352 (543)
T ss_dssp HHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSC
T ss_pred HHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCC
Confidence 8652 346899999999999999999999 568999999999999999999999999999876543211000
Q ss_pred -----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 -----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++|+| | ||+.|..... ......++........ .. .+..
T Consensus 353 ~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~-~~~~~~~~~~~i~~~~--------~~--------~p~~ 415 (543)
T 3c4z_A 353 PGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARG-EKVENKELKQRVLEQA--------VT--------YPDK 415 (543)
T ss_dssp TTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTT-CCCCHHHHHHHHHHCC--------CC--------CCTT
T ss_pred ccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCc-cchhHHHHHHHHhhcc--------cC--------CCcc
Confidence 0112367888 6 7877765321 1111222221111110 00 0011
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAK 619 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~ 619 (639)
....+.+++.+|++.+|++||++.
T Consensus 416 ~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 416 FSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred cCHHHHHHHHHhccCCHhHCCCCc
Confidence 123456788899999999999863
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-18 Score=171.40 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=132.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++ .+|+||+++|+|.+.+
T Consensus 17 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~ 96 (284)
T 3kk8_A 17 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI 96 (284)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred cCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHH
Confidence 468899999864 578999999865432 22345566666643 2689999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCc----c--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSF----T-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~----~-- 534 (639)
... ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++. +|++|||++.......... +
T Consensus 97 ~~~-~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~ 172 (284)
T 3kk8_A 97 VAR-EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPG 172 (284)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGG
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcC
Confidence 643 35899999999999999999999 567999999999999987655 9999999997665432210 0
Q ss_pred --------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 --------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 --------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
....+.++||| | +|+.|.... ....+...+...... ...+. .....
T Consensus 173 y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~--~~~~~~~~~~~~~~~----~~~~~-----------~~~~~ 235 (284)
T 3kk8_A 173 YLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--DQHRLYAQIKAGAYD----YPSPE-----------WDTVT 235 (284)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCC----CCTTT-----------TTTSC
T ss_pred CcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC--chhHHHHHHHhcccc----CCchh-----------hcccC
Confidence 00123367888 5 777776431 111111111110000 00000 01122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++..|++.+|++|||+.|+++
T Consensus 236 ~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 236 PEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHcccChhhCCCHHHHhc
Confidence 34667888999999999999999986
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-18 Score=171.97 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=128.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. ..+..+|+|++..... ....+..|+..++ .+|+||+++|+
T Consensus 35 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~ 113 (326)
T 2x7f_A 35 GTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGS 113 (326)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEE
T ss_pred CCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCc
Confidence 46889999987 4688999999865432 2344555554422 26889999999
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
|.+++... ...+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........
T Consensus 114 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 190 (326)
T 2x7f_A 114 VTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFI 190 (326)
T ss_dssp HHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcccccccc
Confidence 99988753 246889999999999999999999 568999999999999999999999999998865432110
Q ss_pred ------cc---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 533 ------FT---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 533 ------~~---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
.+ ....+.++||| | ||+.|..+... ...+........ +....
T Consensus 191 ~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~---------~~~~~---- 256 (326)
T 2x7f_A 191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-MRALFLIPRNPA---------PRLKS---- 256 (326)
T ss_dssp CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHHSCC---------CCCSC----
T ss_pred CCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH-HHHHHHhhcCcc---------ccCCc----
Confidence 00 01122367887 5 77777643110 000111111000 00000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.+++.+|++.+|++||++.|+++
T Consensus 257 -----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 257 -----KKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp -----SCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -----cccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 011234667888999999999999999986
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-18 Score=171.87 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=133.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh------hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER------AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~------~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+...... ....+..|+..++. +|+||+++++|
T Consensus 16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 95 (283)
T 3bhy_A 16 GQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGEL 95 (283)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred cCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcH
Confidence 468899999875 5889999988654321 23456677766442 68999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCc--
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+++.. ...+++..+..++.++++||+||| ..+|+||||||+||+++.++ .+|++|||+++.........
T Consensus 96 ~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~ 171 (283)
T 3bhy_A 96 FDFLAE-KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNI 171 (283)
T ss_dssp HHHHHH-HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCccccc
Confidence 998864 235899999999999999999999 56899999999999998876 89999999998764322110
Q ss_pred --c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 --T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 --~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ ....+.++||| | ||+.|.... .-.+......... ...++..
T Consensus 172 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~--~~~~~~~---------- 234 (283)
T 3bhy_A 172 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE-----TKQETLTNISAVN--YDFDEEY---------- 234 (283)
T ss_dssp CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC--CCCCHHH----------
T ss_pred CCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc-----chHHHHHHhHhcc--cCCcchh----------
Confidence 0 01122367888 5 777776431 1111111110000 0000000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.|+++
T Consensus 235 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 235 FSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 0112235677889999999999999999986
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=176.95 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=105.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..||||++.... .....+..|+.+++ .+|+||+. |+|
T Consensus 108 G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L 185 (429)
T 3kvw_A 108 GSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNL 185 (429)
T ss_dssp SSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBH
T ss_pred CccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCH
Confidence 568999999764 57899999986532 22234444544432 26789996 688
Q ss_pred hhccccCC-ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc--eeeccccccccccccCCCc--c
Q 041082 460 EKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKLLLKEDQSF--T 534 (639)
Q Consensus 460 ~~~l~~~~-~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~~~~~~~~~--~ 534 (639)
.+++.... ..+++..+..|+.++++||+||| ..+|+||||||+|||++.++. +||+|||+|+......... +
T Consensus 186 ~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt 262 (429)
T 3kvw_A 186 YELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQS 262 (429)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSC
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCC
Confidence 88876533 45899999999999999999999 557999999999999999887 9999999997654332210 0
Q ss_pred ----------ccccccccccc--c-------CCCCCCCc
Q 041082 535 ----------QNTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 535 ----------~~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
....+.++||| | ||+.|...
T Consensus 263 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 263 RFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp GGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 01123478999 7 89888753
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-18 Score=176.74 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=131.5
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh-----------hhhhHHHHHHHHH-------------------------hhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER-----------AFKSFDVACDMMK-------------------------KLV 450 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~-----------~~~~f~~e~~~~~-------------------------~Lv 450 (639)
.++|.||++....|..+|+|++...... ....+..|+..++ .+|
T Consensus 33 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv 112 (362)
T 3pg1_A 33 GSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLV 112 (362)
T ss_dssp ETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEE
T ss_pred CCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEE
Confidence 4689999998888999999988543211 1245666666632 368
Q ss_pred hhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 451 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 451 ~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
+||++ |++.+.+......+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++......
T Consensus 113 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 188 (362)
T 3pg1_A 113 TELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA 188 (362)
T ss_dssp EECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCTTC--------
T ss_pred EccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcCCCCEEEEecCccccccccc
Confidence 88988 6888887765567999999999999999999999 5679999999999999999999999999997544322
Q ss_pred CC----------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcc-----------
Q 041082 531 QS----------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVM----------- 575 (639)
Q Consensus 531 ~~----------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~----------- 575 (639)
.. .+. ...+.++||| | ||+.|...... ...+...+...-.....
T Consensus 189 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 267 (362)
T 3pg1_A 189 NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF-YNQLNKIVEVVGTPKIEDVVMFSSPSAR 267 (362)
T ss_dssp -------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCHHHHHHTSCHHHH
T ss_pred ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHcCCCChHHhhhccchhhh
Confidence 11 000 1123468898 6 88888753210 00111111100000000
Q ss_pred eeeeccccccccc-cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 576 EVVDVNLLSMEDK-YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 576 ~~~d~~l~~~~~~-~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+...+...... ...........+.+++.+|++.+|++|||+.|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 268 DYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 0000000000000 00000112345778999999999999999999985
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-18 Score=172.77 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=131.2
Q ss_pred CCcCcceEEEecC-CceeeeEEechhhhhhhhhHHHHHHHHH----------------------------------hhhh
Q 041082 407 SGFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMK----------------------------------KLVL 451 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------------------~Lv~ 451 (639)
.++|.||++.... +..+|+|++..........+..|+..++ .+|+
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 101 (320)
T 2i6l_A 22 GGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQ 101 (320)
T ss_dssp ----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEE
T ss_pred CCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEe
Confidence 4688999998764 8899999987665555566777776643 2678
Q ss_pred hcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccC
Q 041082 452 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 452 ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~ 530 (639)
||++ |+|.+++.. ..+++.....++.++++||+||| ..+|+||||||+||+++ +++.+||+|||+++......
T Consensus 102 e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 175 (320)
T 2i6l_A 102 EYME-TDLANVLEQ--GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHY 175 (320)
T ss_dssp ECCS-EEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC----
T ss_pred eccC-CCHHHHhhc--CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCc
Confidence 8887 688888754 45889999999999999999999 56899999999999997 56799999999998764321
Q ss_pred CC--------------ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc----ceee
Q 041082 531 QS--------------FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVV 578 (639)
Q Consensus 531 ~~--------------~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~ 578 (639)
.. .+. ...+.++||| | ||+.|..... .......+....+... .+..
T Consensus 176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 253 (320)
T 2i6l_A 176 SHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH--ELEQMQLILESIPVVHEEDRQELL 253 (320)
T ss_dssp ----CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred ccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCchhhhhhhh
Confidence 10 000 1123368998 6 8888875321 1111111111111100 0000
Q ss_pred -------eccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 579 -------DVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 579 -------d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.....................+.+++.+|++.+|++|||+.|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 254 SVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp TTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 000000000000000112345778899999999999999999986
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=155.27 Aligned_cols=152 Identities=24% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCcccccccc
Q 041082 216 LKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295 (639)
Q Consensus 216 L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 295 (639)
-+.++.+++.++..+..+ ..+++.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEeEccCCCcCccCCCC---------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 456666666665544321 12445555555555554444455555555555555555443334444
Q ss_pred CCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEE
Q 041082 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYL 375 (639)
Q Consensus 296 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 375 (639)
.+++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|++++|++.+..+..|..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 5555555555555555444444455555555555555554 344444455555555555555554444444444555555
Q ss_pred EcccCCCC
Q 041082 376 NLSSNFFI 383 (639)
Q Consensus 376 ~ls~N~l~ 383 (639)
++++|++.
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 55555443
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=177.32 Aligned_cols=194 Identities=21% Similarity=0.300 Sum_probs=125.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||......|..||||++..... ..+..|+..++ .+|+||+. |+|.+++..
T Consensus 26 G~~g~V~~~~~~~g~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~ 101 (434)
T 2rio_A 26 GSSGTVVFQGSFQGRPVAVKRMLIDFC---DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVES 101 (434)
T ss_dssp CSTTCEEEEEESSSSEEEEEEEEGGGH---HHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHT
T ss_pred CCCeEEEEEEEECCeEEEEEEEcHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhc
Confidence 468888777667899999999865432 23444554432 26899995 699998865
Q ss_pred CCc------cCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-------------cceeeccccccccc
Q 041082 466 SNY------ILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-------------MVAHLSDFGMAKLL 526 (639)
Q Consensus 466 ~~~------~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-------------~~~~i~dfgla~~~ 526 (639)
... ..++..+.+|+.+++.||+||| +.+|+||||||+||+++.+ +.+||+|||+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~ 178 (434)
T 2rio_A 102 KNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKL 178 (434)
T ss_dssp C------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEEC
T ss_pred cCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceec
Confidence 321 1133345789999999999999 5689999999999999754 48999999999876
Q ss_pred cccCCC---------------ccc-----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhC
Q 041082 527 LKEDQS---------------FTQ-----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLL 570 (639)
Q Consensus 527 ~~~~~~---------------~~~-----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~ 570 (639)
...... .+. ...+.++||| | | |+.|..+..... ..++....
T Consensus 179 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~i~~~~~ 255 (434)
T 2rio_A 179 DSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE---SNIIRGIF 255 (434)
T ss_dssp CC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH---HHHHHTCC
T ss_pred CCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH---HHHhcCCC
Confidence 543211 000 1123367888 6 5 777765432111 11111111
Q ss_pred CCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 571 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... . +. ..........+.+++.+|++.+|++|||+.||++
T Consensus 256 ~~~--~-----~~------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 256 SLD--E-----MK------CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp CCC--C-----CT------TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred Ccc--c-----cc------ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 100 0 00 0012344567788999999999999999999985
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-18 Score=182.14 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=133.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+.+++. +|+||+++|+|.+.+
T Consensus 33 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~ 112 (486)
T 3mwu_A 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI 112 (486)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred cCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHH
Confidence 568999999864 688999999865432 234556677776543 689999999998887
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCC----cc--
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQS----FT-- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~----~~-- 534 (639)
... ..+++.....|+.+++.||+||| ..+|+||||||.||+++ .++.+||+|||+|+........ .+
T Consensus 113 ~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~ 188 (486)
T 3mwu_A 113 IKR-KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY 188 (486)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGG
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCC
Confidence 643 35899999999999999999999 56899999999999995 4667999999999866433211 00
Q ss_pred ----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHh-hCCCCcceeeeccccccccccccchHHHH
Q 041082 535 ----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND-LLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 ----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.... ....+...+.. ..+. +. +......
T Consensus 189 y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~~------~~----------~~~~~~s 250 (486)
T 3mwu_A 189 YIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK--NEYDILKRVETGKYAF------DL----------PQWRTIS 250 (486)
T ss_dssp GCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHTCCCS------CS----------GGGGGSC
T ss_pred CCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCCC------CC----------cccCCCC
Confidence 0 0112367888 6 788876531 11111111111 0000 00 0011122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 251 ~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 251 DDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 34668889999999999999999986
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=180.08 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=92.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..+|||++.... ....+.+..|+..++ .+|+||++ |+
T Consensus 37 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~ 115 (432)
T 3n9x_A 37 GSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SD 115 (432)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EE
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cC
Confidence 468999999864 57899999986432 223345666666633 36788876 58
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|.+++.. ...+++.....++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 116 L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~ 181 (432)
T 3n9x_A 116 LKKLFKT-PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINS 181 (432)
T ss_dssp HHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred HHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence 8888764 345899999999999999999999 56799999999999999999999999999987653
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-18 Score=179.76 Aligned_cols=195 Identities=22% Similarity=0.196 Sum_probs=131.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+||||+++|+|.++
T Consensus 80 G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~ 159 (410)
T 3v8s_A 80 GAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL 159 (410)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHH
Confidence 468999999875 578999999865321 22334556666543 378999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------cc--
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------FT-- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------~~-- 534 (639)
+... .+++.....++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+|+........ .+
T Consensus 160 l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~ 234 (410)
T 3v8s_A 160 MSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPD 234 (410)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGG
T ss_pred HHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCcc
Confidence 8643 4788888999999999999999 568999999999999999999999999999876543210 00
Q ss_pred ----c----cc----cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 535 ----Q----NT----NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 535 ----~----~~----~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
. .. .+.++|+| | ||+.|.... +..+......... ....-|. .
T Consensus 235 Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-----~~~~~~~~i~~~~-~~~~~p~-----------~ 297 (410)
T 3v8s_A 235 YISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----SLVGTYSKIMNHK-NSLTFPD-----------D 297 (410)
T ss_dssp GCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTHH-HHCCCCT-----------T
T ss_pred ccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-----ChhhHHHHHHhcc-ccccCCC-----------c
Confidence 0 00 22367888 6 788776521 1111111111000 0000000 0
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQ--RINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~--RP~m~~v~~ 623 (639)
......+.+++.+|+..+|++ ||++.||.+
T Consensus 298 ~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 298 NDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp CCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 011124566788999999998 999999875
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-18 Score=182.93 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=130.6
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++.... ......+..|+.+++ .+|+||+++|+|.+.+
T Consensus 48 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~ 127 (494)
T 3lij_A 48 GAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI 127 (494)
T ss_dssp C---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHH
T ss_pred CCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHH
Confidence 468999999865 67899999986543 222455667777744 2689999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc----cc-
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF----TQ- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~----~~- 535 (639)
... ..+++.....|+.++++||+||| ..+|+||||||+||+++. ++.+||+|||+|+......... +.
T Consensus 128 ~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~ 203 (494)
T 3lij_A 128 IHR-MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAY 203 (494)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTT
T ss_pred HHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcC
Confidence 642 35889999999999999999999 568999999999999976 4559999999998765432110 00
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|.... .-.+......... .....+. ......
T Consensus 204 y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~-~~~~~~~-----------~~~~s~ 266 (494)
T 3lij_A 204 YIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQ-----TDQEILRKVEKGK-YTFDSPE-----------WKNVSE 266 (494)
T ss_dssp TCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTC-CCCCSGG-----------GTTSCH
T ss_pred eeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCC-CCCCchh-----------cccCCH
Confidence 0123378888 6 788876531 1111111111000 0000000 011223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 267 ~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 267 GAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHCCCChhhCccHHHHhc
Confidence 4667889999999999999999985
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=174.46 Aligned_cols=207 Identities=21% Similarity=0.242 Sum_probs=130.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..|..||+|++.... ......+..|+..++ .+|+||+ ++
T Consensus 36 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~ 114 (367)
T 1cm8_A 36 GAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GT 114 (367)
T ss_dssp ----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SE
T ss_pred cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CC
Confidence 46899999986 468999999985432 222345556666532 3678888 67
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--c--
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--F-- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~-- 533 (639)
+|.+++.. ..+++.....++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 115 ~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~ 189 (367)
T 1cm8_A 115 DLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTR 189 (367)
T ss_dssp EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCG
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCC
Confidence 88888764 35889999999999999999999 568999999999999999999999999999876543211 0
Q ss_pred ----cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCccee---ee-----------cc
Q 041082 534 ----TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEV---VD-----------VN 581 (639)
Q Consensus 534 ----~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~---~d-----------~~ 581 (639)
+. ...+.+.||| | ||+.|.... +......-+.........+. +. +.
T Consensus 190 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 267 (367)
T 1cm8_A 190 WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPE 267 (367)
T ss_dssp GGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCC
T ss_pred CcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCC
Confidence 00 1123478998 6 888887531 11111111101000000000 00 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ...........+.++..+|++.+|++|||+.|+++
T Consensus 268 ~~~~~--~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 268 LEKKD--FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CCCCC--GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCC--HHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 00000 00001112335677888999999999999999986
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-17 Score=152.92 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=120.3
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLS 151 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 151 (639)
.+.+++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+..+..+++|++|+|++|++++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356788999999999998 566 6889999999999999664 345788999999999999999887777787776666
Q ss_pred EEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 152 DLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 152 ~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
+|+|++|. +++..|..+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.+++.+
T Consensus 116 ~L~Ls~n~------------------i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 116 LLDISHSA------------------HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp EEECCSSB------------------CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred EEEecCCc------------------cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 66555554 445667778899999999999998334445 5899999999999999998743
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCcccc
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISG 264 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~ 264 (639)
. +. ..++|+.|++++|++.+
T Consensus 176 ~------l~-------~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 G------IE-------DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T------GG-------GCSSCCEEEECBC----
T ss_pred H------hc-------cCCCCCEEEeeCcccCC
Confidence 1 11 13478899999998865
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=167.79 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=131.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh----hhhhhHHHHHHHHH----------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE----RAFKSFDVACDMMK----------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~----~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|.+..... .....+..|+..++ .+|+||+++| +
T Consensus 16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l 94 (305)
T 2wtk_C 16 GSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-M 94 (305)
T ss_dssp CSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-H
T ss_pred CCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-H
Confidence 468899999864 578999999875432 22345666666632 3688999876 5
Q ss_pred hhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC------
Q 041082 460 EKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 460 ~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
.+.+.. ....+++..+..++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 171 (305)
T 2wtk_C 95 QEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTS 171 (305)
T ss_dssp HHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCC
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccC
Confidence 555543 3346899999999999999999999 568999999999999999999999999999876432110
Q ss_pred -c------cc------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 533 -F------TQ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 533 -~------~~------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. +. ...+.++||| | ||+.|... ....+......... ..+
T Consensus 172 ~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~-----~~~~~~~~~i~~~~------~~~-------- 232 (305)
T 2wtk_C 172 QGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEG-----DNIYKLFENIGKGS------YAI-------- 232 (305)
T ss_dssp CSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCC-----SSHHHHHHHHHHCC------CCC--------
T ss_pred CCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHhcCC------CCC--------
Confidence 0 00 0113367888 6 77777652 12222211111000 000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
+..+...+.+++.+|++.+|++||++.|+++.
T Consensus 233 --~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 233 --PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp --CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --CCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 01122346678889999999999999999864
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-18 Score=174.91 Aligned_cols=195 Identities=21% Similarity=0.229 Sum_probs=125.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh---hhhhHHHHHHH-H--------------------HhhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER---AFKSFDVACDM-M--------------------KKLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~---~~~~f~~e~~~-~--------------------~~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++...... ....+..|... + .++|+||+++|+|.+
T Consensus 49 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~ 128 (373)
T 2r5t_A 49 GSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFY 128 (373)
T ss_dssp CTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 4788999998654321 11222233322 1 137899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc------
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++...........
T Consensus 129 ~l~~~-~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~ 204 (373)
T 2r5t_A 129 HLQRE-RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPE 204 (373)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCC
T ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCcc
Confidence 88642 35788888899999999999999 668999999999999999999999999999864322111000
Q ss_pred ---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 536 ---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
...+.++|+| | +|+.|.... +..+.......... .+.+ ...
T Consensus 205 y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~--~~~~--------------~~~ 263 (373)
T 2r5t_A 205 YLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----NTAEMYDNILNKPL--QLKP--------------NIT 263 (373)
T ss_dssp CCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----BHHHHHHHHHHSCC--CCCS--------------SSC
T ss_pred ccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhccc--CCCC--------------CCC
Confidence 0112367777 5 777776421 11111111110000 0000 111
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..+.+++.+|++.+|++||++.+.++.+.
T Consensus 264 ~~~~~li~~lL~~dp~~R~~~~~~~~~i~ 292 (373)
T 2r5t_A 264 NSARHLLEGLLQKDRTKRLGAKDDFMEIK 292 (373)
T ss_dssp HHHHHHHHHHTCSSGGGSTTTTTTHHHHH
T ss_pred HHHHHHHHHHcccCHHhCCCCCCCHHHHh
Confidence 24567888999999999999975554443
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-18 Score=183.70 Aligned_cols=196 Identities=22% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++... .|..+|||++.... ......+..|+..++ .+|+||+++|+|.+.
T Consensus 37 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~ 116 (484)
T 3nyv_A 37 GSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDE 116 (484)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHH
Confidence 468999999865 68999999986443 223455667777644 268999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCC----cc-
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQS----FT- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~----~~- 534 (639)
+... ..+++.....|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+........ .+
T Consensus 117 ~~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~ 192 (484)
T 3nyv_A 117 IISR-KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTA 192 (484)
T ss_dssp HHTC-SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGG
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCc
Confidence 8643 45899999999999999999999 5679999999999999 46789999999999876543211 00
Q ss_pred -----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|.... ....+...+...... ++ . +......
T Consensus 193 ~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--~~~~~~~~i~~~~~~-----~~--~--------~~~~~~s 255 (484)
T 3nyv_A 193 YYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGA--NEYDILKKVEKGKYT-----FE--L--------PQWKKVS 255 (484)
T ss_dssp GTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHCCCC-----CC--S--------GGGGGSC
T ss_pred cccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHcCCCC-----CC--C--------cccccCC
Confidence 0 0123378888 6 888887531 111222222111000 00 0 0011122
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 256 ~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 256 ESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 34667889999999999999999985
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-17 Score=176.22 Aligned_cols=115 Identities=24% Similarity=0.416 Sum_probs=86.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH-----------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK-----------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-----------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..|..+|+|++.... ......+..|+..++ .+|+|||+ |+|.
T Consensus 20 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~ 98 (388)
T 3oz6_A 20 GAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLH 98 (388)
T ss_dssp ----CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHH
Confidence 46899999975 468999999885322 122233444444422 36889997 5888
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.++.. ..+++..+..++.++++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+.
T Consensus 99 ~~~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 99 AVIRA--NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp HHHHH--TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 87764 35889999999999999999999 6689999999999999999999999999998653
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=174.91 Aligned_cols=213 Identities=20% Similarity=0.169 Sum_probs=133.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------------hhhhhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------------KLVLEY 453 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------------~Lv~ey 453 (639)
.++|.||++.. .++..+|+|++.... .....+..|+..++ .+||||
T Consensus 48 G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~ 126 (397)
T 1wak_A 48 GHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEV 126 (397)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECC
T ss_pred cCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEec
Confidence 46899999975 467899999986432 22234444544422 257788
Q ss_pred CCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-------------------
Q 041082 454 MPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM------------------- 513 (639)
Q Consensus 454 ~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~------------------- 513 (639)
+ +|++.+.+.. ....+++..+..|+.++++||+|||..+ +|+||||||.||+++.++
T Consensus 127 ~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~ 203 (397)
T 1wak_A 127 L-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAP 203 (397)
T ss_dssp C-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHHC--------
T ss_pred c-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCC
Confidence 8 4556555543 3356899999999999999999999422 799999999999999775
Q ss_pred ------------------------------ceeeccccccccccccCCCc--c----------ccccccccccc--c---
Q 041082 514 ------------------------------VAHLSDFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G--- 546 (639)
Q Consensus 514 ------------------------------~~~i~dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G--- 546 (639)
.+||+|||+|+......... + ....+.++||| |
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il 283 (397)
T 1wak_A 204 PPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMA 283 (397)
T ss_dssp -------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHH
T ss_pred CCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHH
Confidence 79999999998765432210 0 01123478999 7
Q ss_pred ----CCCCCCCccCCCcc-----chHHHHHhh--CCCC-------cceeeecc--cc--------c---cccccccchHH
Q 041082 547 ----TRRNPQMNFFSGEM-----TLKSWVNDL--LPIS-------VMEVVDVN--LL--------S---MEDKYFTTKKQ 595 (639)
Q Consensus 547 ----tg~~p~~~~~~~~~-----~l~~~~~~~--~~~~-------~~~~~d~~--l~--------~---~~~~~~~~~~~ 595 (639)
||+.|......... .+....... .+.. ..+.++.. +. . ..........+
T Consensus 284 ~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
T 1wak_A 284 FELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQE 363 (397)
T ss_dssp HHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHH
T ss_pred HHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchh
Confidence 89888764321111 011111000 0000 00000000 00 0 00000112355
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+...+.+++.+|++.+|++|||+.||++
T Consensus 364 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 364 EAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 6678899999999999999999999985
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=172.92 Aligned_cols=197 Identities=21% Similarity=0.239 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-----hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-----ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-----~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+..++ .+|+||+++|+|.
T Consensus 37 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~ 116 (345)
T 3hko_A 37 GSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLL 116 (345)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHH
T ss_pred cCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHH
Confidence 46889999986 457889999986543 223456667776644 2789999999999
Q ss_pred hcccc---------------------------------------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeec
Q 041082 461 KCLYS---------------------------------------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501 (639)
Q Consensus 461 ~~l~~---------------------------------------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~d 501 (639)
+++.. ....+++.....|+.++++||+||| ..+|+|||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 193 (345)
T 3hko_A 117 DKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH---NQGICHRD 193 (345)
T ss_dssp HHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH---HTTEECCC
T ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccC
Confidence 88742 0112356677889999999999999 56799999
Q ss_pred CCCCceeecCCc--ceeeccccccccccccCCC---------------ccc------cccccccccc--c-------CCC
Q 041082 502 LKLSNVLLGNNM--VAHLSDFGMAKLLLKEDQS---------------FTQ------NTNTCHHRIY--G-------TRR 549 (639)
Q Consensus 502 lk~~nill~~~~--~~~i~dfgla~~~~~~~~~---------------~~~------~~~~~~~dvy--G-------tg~ 549 (639)
|||+||+++.++ .+||+|||+++.+...... .+. ...+.++||| | ||+
T Consensus 194 lkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~ 273 (345)
T 3hko_A 194 IKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGA 273 (345)
T ss_dssp CCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 999999998766 8999999999865431110 000 1112366777 5 666
Q ss_pred CCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 550 NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 550 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.|.... .-.+........ ..... ..........+.+++..|++.+|++||++.|+++
T Consensus 274 ~pf~~~-----~~~~~~~~~~~~--------~~~~~----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 274 VPFPGV-----NDADTISQVLNK--------KLCFE----NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp CSSCCS-----SHHHHHHHHHHC--------CCCTT----SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCCC-----ChHHHHHHHHhc--------ccccC----CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 665421 111111111100 00000 0000112235677888999999999999999986
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-18 Score=172.91 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=132.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++... +|..+|+|.+..........+..|+..++ .+|+||+++|+|.+++..
T Consensus 20 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 99 (304)
T 2jam_A 20 GAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE 99 (304)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH
T ss_pred CCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHH
Confidence 468899999864 68899999987654433445666776643 268999999999988764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee---cCCcceeeccccccccccccCCC---------c
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL---GNNMVAHLSDFGMAKLLLKEDQS---------F 533 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill---~~~~~~~i~dfgla~~~~~~~~~---------~ 533 (639)
. ..+++.....++.+++.||+||| ..+|+||||||+||++ ++++.+|++|||+++........ .
T Consensus 100 ~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~a 175 (304)
T 2jam_A 100 R-GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVA 175 (304)
T ss_dssp H-SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCC
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccC
Confidence 2 35889999999999999999999 5689999999999999 78899999999999865432111 0
Q ss_pred cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 534 TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 534 ~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
+. ...+.++||| | ||+.|.... ....+.+-+...... +.... .......+
T Consensus 176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~-----~~~~~----------~~~~~~~~ 238 (304)
T 2jam_A 176 PEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE--TESKLFEKIKEGYYE-----FESPF----------WDDISESA 238 (304)
T ss_dssp TTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHCCCC-----CCTTT----------TTTSCHHH
T ss_pred hHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHcCCCC-----CCccc----------cccCCHHH
Confidence 00 1123378888 6 787776431 111111111111000 00000 01122356
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 239 KDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 77889999999999999999986
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-18 Score=172.20 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=96.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------------------hhhhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------------------~Lv~e 452 (639)
.++|.||++.. .++..+|+|.+.... .....+..|+..++ .+|+|
T Consensus 17 G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 95 (303)
T 1zy4_A 17 GAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQME 95 (303)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEE
T ss_pred CCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEe
Confidence 46889999986 468899999986432 23345666666532 26789
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|+++|+|.+++......+++.....++.++++||+||| ..+|+||||||+||+++.++.+|++|||+++...
T Consensus 96 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 167 (303)
T 1zy4_A 96 YCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVH 167 (303)
T ss_dssp CCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTT
T ss_pred cCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeCcchhhcc
Confidence 99999999999765566888999999999999999999 5679999999999999999999999999998664
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=171.06 Aligned_cols=211 Identities=20% Similarity=0.177 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh--hhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER--AFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..+..+|+|++...... ....+..|+..++ .+|+||++ |+|.+++
T Consensus 45 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~ 123 (329)
T 3gbz_A 45 GTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYM 123 (329)
T ss_dssp CSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHH
T ss_pred cCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHH
Confidence 56899999974 46889999998654322 2334556666643 26899998 5898887
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee-----cCCcceeeccccccccccccCCC------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL-----GNNMVAHLSDFGMAKLLLKEDQS------ 532 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill-----~~~~~~~i~dfgla~~~~~~~~~------ 532 (639)
... ..+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+........
T Consensus 124 ~~~-~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~ 199 (329)
T 3gbz_A 124 DKN-PDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEII 199 (329)
T ss_dssp HHC-TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------
T ss_pred hhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcC
Confidence 643 35899999999999999999999 5689999999999999 45566999999999876432111
Q ss_pred -----ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhh-CCCC--cceee-eccccccc-cc
Q 041082 533 -----FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL-LPIS--VMEVV-DVNLLSME-DK 588 (639)
Q Consensus 533 -----~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~-~~~~--~~~~~-d~~l~~~~-~~ 588 (639)
.+. ...+.++||| | ||+.|..... ....+...+... .+.. ..... .+...... ..
T Consensus 200 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (329)
T 3gbz_A 200 TLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDS-EIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKF 278 (329)
T ss_dssp CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC
T ss_pred CccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCC-HHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhh
Confidence 000 1124478998 6 8888765321 111111111111 1110 00000 00000000 00
Q ss_pred cccchH-----HHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 589 YFTTKK-----QCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 589 ~~~~~~-----~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... .....+.+++.+|++.+|++|||+.|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 279 RGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp CCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 000001 12245678999999999999999999975
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-17 Score=182.26 Aligned_cols=196 Identities=19% Similarity=0.235 Sum_probs=132.0
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-------------hhhhhHHHHHHHHH--------------------hhhhh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-------------RAFKSFDVACDMMK--------------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-------------~~~~~f~~e~~~~~--------------------~Lv~e 452 (639)
.++|.||++... .+..+|+|++..... .....+..|+.+++ .+|+|
T Consensus 47 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 126 (504)
T 3q5i_A 47 GAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTE 126 (504)
T ss_dssp --CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEe
Confidence 468999999865 578999999864331 12345666776644 26899
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---ceeecccccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM---VAHLSDFGMAKLLLKE 529 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~---~~~i~dfgla~~~~~~ 529 (639)
|+++|+|.+.+... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++ .+||+|||+|+.....
T Consensus 127 ~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~ 202 (504)
T 3q5i_A 127 FYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD 202 (504)
T ss_dssp CCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTT
T ss_pred cCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCC
Confidence 99999999888642 35899999999999999999999 56899999999999998765 6999999999876543
Q ss_pred CCCccc-------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccc
Q 041082 530 DQSFTQ-------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMED 587 (639)
Q Consensus 530 ~~~~~~-------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 587 (639)
...... ...+.++||| | +|+.|.... .-.+.+........ .++..
T Consensus 203 ~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~--~~~~~------ 269 (504)
T 3q5i_A 203 YKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQ-----NDQDIIKKVEKGKY--YFDFN------ 269 (504)
T ss_dssp SCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC--CCCHH------
T ss_pred CccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCC--CCCcc------
Confidence 211000 0123367888 6 787776531 11111111110000 00000
Q ss_pred ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 588 KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.++...|++.+|++|||+.|+++
T Consensus 270 ----~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 270 ----DWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp ----HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----ccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00112235677889999999999999999985
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=171.96 Aligned_cols=116 Identities=27% Similarity=0.337 Sum_probs=94.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|++..... .....+..|..+++ .+|+||+++|+|.+
T Consensus 20 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~ 99 (345)
T 3a8x_A 20 GSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMF 99 (345)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred cCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence 468999999875 578999999875432 22334445555432 26899999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++..
T Consensus 100 ~l~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~ 160 (345)
T 3a8x_A 100 HMQRQ-RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 160 (345)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccc
Confidence 88642 35899999999999999999999 568999999999999999999999999999864
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=168.38 Aligned_cols=211 Identities=21% Similarity=0.264 Sum_probs=131.9
Q ss_pred CCcCcceEEEe--cCCceeeeEEechhhhh--hhhhHHHHHHHHH----------------------------hhhhhcC
Q 041082 407 SGFGSIYKARI--QDGMKVAVKVFDLQYER--AFKSFDVACDMMK----------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l--~~g~~vavK~l~~~~~~--~~~~f~~e~~~~~----------------------------~Lv~ey~ 454 (639)
.++|.||++.. .++..+|+|++...... ....+..|+..++ .+|+||+
T Consensus 22 G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~ 101 (326)
T 1blx_A 22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 101 (326)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECC
T ss_pred cccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecC
Confidence 46889999987 46789999988643321 1223434443321 2678888
Q ss_pred CCCCchhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-
Q 041082 455 PHGSLEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS- 532 (639)
Q Consensus 455 ~~gsL~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~- 532 (639)
+ |+|.+++... ...+++..+..++.+++.||+||| ..+|+||||||.||+++.++.+||+|||+++........
T Consensus 102 ~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 177 (326)
T 1blx_A 102 D-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALT 177 (326)
T ss_dssp S-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGC
T ss_pred C-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecCcccccccCCCCcc
Confidence 7 6998888653 335899999999999999999999 568999999999999999999999999999876432110
Q ss_pred ---cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--CCC--cc-eeeecc--cc
Q 041082 533 ---FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--PIS--VM-EVVDVN--LL 583 (639)
Q Consensus 533 ---~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~~~--~~-~~~d~~--l~ 583 (639)
.+ ....+.++||| | ||+.|.... ........+.... +.. .. +...++ ..
T Consensus 178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 1blx_A 178 SVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH 255 (326)
T ss_dssp CCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSC
T ss_pred ccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHcCCCCcccCccccccchhhhc
Confidence 00 01123478999 6 888887532 1111111111111 100 00 000000 00
Q ss_pred ccc-cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SME-DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
... .............+.+++.+|++.+|++||++.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 256 SKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000 0000001112345677889999999999999999985
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=177.20 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=88.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK-------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+..||||++.... ....+.+..|+.+++ ++|+||+. |+
T Consensus 64 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~ 142 (458)
T 3rp9_A 64 GSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SD 142 (458)
T ss_dssp ----CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EE
T ss_pred cCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cc
Confidence 468999999754 68899999985432 223345666776643 35778764 67
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|.+++.. ...+++.....++.++++||+||| ..+|+||||||+|||++.++.+||+|||+|+...
T Consensus 143 L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~ 207 (458)
T 3rp9_A 143 FKKLFRT-PVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVD 207 (458)
T ss_dssp HHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred hhhhccc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence 8777764 345899999999999999999999 5689999999999999999999999999998764
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=169.96 Aligned_cols=210 Identities=18% Similarity=0.210 Sum_probs=131.2
Q ss_pred CCcCcceEEEec-CC-ceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DG-MKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g-~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++... .+ ..+|+|++.... .....+..|+..++ .+|+||+ +|+
T Consensus 30 G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~ 107 (355)
T 2eu9_A 30 GTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL-GKN 107 (355)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC-CCB
T ss_pred cCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc-CCC
Confidence 468899999864 33 689999986432 22234444444422 2678999 556
Q ss_pred chhccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee-------------------cCCcceeec
Q 041082 459 LEKCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL-------------------GNNMVAHLS 518 (639)
Q Consensus 459 L~~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill-------------------~~~~~~~i~ 518 (639)
+.+.+... ...+++..+..|+.++++||+||| ..+|+||||||+||++ +.++.+||+
T Consensus 108 l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~ 184 (355)
T 2eu9_A 108 TFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVA 184 (355)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEEC
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEe
Confidence 66666543 346899999999999999999999 6789999999999999 668899999
Q ss_pred cccccccccccCCCc--c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC---CCCc
Q 041082 519 DFGMAKLLLKEDQSF--T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL---PISV 574 (639)
Q Consensus 519 dfgla~~~~~~~~~~--~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~---~~~~ 574 (639)
|||+++......... + ....+.++||| | ||+.|....- .......+.... |...
T Consensus 185 Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~ 262 (355)
T 2eu9_A 185 DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE--NREHLVMMEKILGPIPSHM 262 (355)
T ss_dssp CCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHH
T ss_pred ecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCcHHH
Confidence 999998654332210 0 01123478999 6 8888876321 111111111111 1000
Q ss_pred -------ceeeeccccccc---------------cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 575 -------MEVVDVNLLSME---------------DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 575 -------~~~~d~~l~~~~---------------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
............ .........+...+.+++.+|++.+|++|||+.||++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 263 IHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred hhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 000000000000 0000011233457889999999999999999999984
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=177.21 Aligned_cols=206 Identities=20% Similarity=0.182 Sum_probs=128.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|+|++.... ......+..|+..++ .+|+||++++
T Consensus 73 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~ 152 (464)
T 3ttj_A 73 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN 152 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCCC
Confidence 56899999975 468899999986432 223345556665532 4678888764
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
+.+.+.. .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+.........
T Consensus 153 -l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~g 225 (464)
T 3ttj_A 153 -LCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 225 (464)
T ss_dssp -HHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----C
T ss_pred -HHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcc
Confidence 5555432 3889999999999999999999 5689999999999999999999999999998765432110
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHH--hhCCCC-------------------
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVN--DLLPIS------------------- 573 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~--~~~~~~------------------- 573 (639)
+ ....+.+.||| | +|+.|.... .....|.. ......
T Consensus 226 t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~----~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~ 301 (464)
T 3ttj_A 226 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR----DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENR 301 (464)
T ss_dssp CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTS
T ss_pred cccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcc
Confidence 0 01123378999 7 888887531 11111110 000000
Q ss_pred --cceeeeccccccc--cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 --VMEVVDVNLLSME--DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 --~~~~~d~~l~~~~--~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....--+...... ....+........+.++..+|++.+|++|||+.|+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 302 PKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp CCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000000000 0000111223456888999999999999999999986
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-17 Score=165.34 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=133.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... .+..+|+|++..... .....+..|+..++. +|+||+++++|.+.+
T Consensus 33 G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 112 (287)
T 2wei_A 33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI 112 (287)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHH
T ss_pred CCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHH
Confidence 468899999875 688999999865432 234456667766432 688999999998877
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCcc------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSFT------ 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~~------ 534 (639)
... ..+++..+..++.++++||+||| ..+++||||||+||+++. +..+|++|||+++..........
T Consensus 113 ~~~-~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~ 188 (287)
T 2wei_A 113 IKR-KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY 188 (287)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHT
T ss_pred Hhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCccc
Confidence 542 35899999999999999999999 568999999999999975 45799999999987654321100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
....+.++||| | ||+.|.... ....+...+.. ... ..+. ........
T Consensus 189 y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~--~~~~~~~~~~~---~~~--~~~~----------~~~~~~~~ 251 (287)
T 2wei_A 189 YIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGK--NEYDILKRVET---GKY--AFDL----------PQWRTISD 251 (287)
T ss_dssp TCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHH---CCC--CCCS----------GGGTTSCH
T ss_pred ccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHc---CCC--CCCc----------hhhhhcCH
Confidence 00123367888 6 787776531 11111111111 000 0000 00011223
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.+++.+|++.+|++|||+.|+++
T Consensus 252 ~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 252 DAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHcccChhhCcCHHHHhc
Confidence 5677889999999999999999986
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=170.21 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=91.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH-------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK-------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..+|+|.+..... .....+..|+..++ .+|+||++ |+|
T Consensus 22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L 100 (353)
T 2b9h_A 22 GAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDL 100 (353)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEH
T ss_pred CCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccH
Confidence 468899999865 688999999864322 22344556666533 25677876 578
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
.+++.. ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++...
T Consensus 101 ~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 101 HRVIST--QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred HHHHhh--cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 777654 35899999999999999999999 5689999999999999999999999999998764
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-17 Score=167.64 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=117.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhh-hh-hhHHHHHHHHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYER-AF-KSFDVACDMMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~-~~-~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... +|..+|+|.+...... .. ..+..+...++ .+|+||+ ++.+....
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~ 114 (318)
T 2dyl_A 36 GTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLK 114 (318)
T ss_dssp ----CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHH
T ss_pred cCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHH
Confidence 468899999875 6889999998654321 11 11222222211 2678888 33443333
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----------c
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----------F 533 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----------~ 533 (639)
......+++..+..++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........ .
T Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a 192 (318)
T 2dyl_A 115 KRMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMA 192 (318)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccC
Confidence 32334689999999999999999999941 37999999999999999999999999999765432211 0
Q ss_pred c---------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 534 T---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 534 ~---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
+ ....+.++||| | ||+.|..... .-.+.......... +.+.. ...
T Consensus 193 PE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~-----~~~~~--------~~~ 255 (318)
T 2dyl_A 193 PERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK----TDFEVLTKVLQEEP-----PLLPG--------HMG 255 (318)
T ss_dssp HHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC----SHHHHHHHHHHSCC-----CCCCS--------SSC
T ss_pred hhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC----ccHHHHHHHhccCC-----CCCCc--------cCC
Confidence 0 01122367888 6 7777765311 11111111111100 00000 001
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++||++.|+++
T Consensus 256 ~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 256 FSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1234667888999999999999999986
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-17 Score=171.32 Aligned_cols=169 Identities=22% Similarity=0.238 Sum_probs=107.5
Q ss_pred hhhhcCCCCCchhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccc
Q 041082 449 LVLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAK 524 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~ 524 (639)
+||||++ |+|.+.+.. ....+++.....++.++++||+||| ..+|+||||||+||+++ .++.+||+|||+|+
T Consensus 115 lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~ 190 (383)
T 3eb0_A 115 VIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAK 190 (383)
T ss_dssp EEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred EEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCc
Confidence 7899998 577776653 3456899999999999999999999 67899999999999998 68999999999998
Q ss_pred cccccCCCc----------cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC-------
Q 041082 525 LLLKEDQSF----------TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS------- 573 (639)
Q Consensus 525 ~~~~~~~~~----------~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~------- 573 (639)
.+....... +. ...+.++||| | +|+.|..... ....+...+...-...
T Consensus 191 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~i~~~~g~p~~~~~~~~ 269 (383)
T 3eb0_A 191 KLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGET-SIDQLVRIIQIMGTPTKEQMIRM 269 (383)
T ss_dssp ECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHH
T ss_pred ccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCCHHHHHHh
Confidence 764332110 00 1123478998 6 8888875321 1111222221111000
Q ss_pred ---cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 ---VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 ---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+..-+.+.... .....+......+.+++.+|++.+|++|||+.|+++
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 270 NPHYTEVRFPTLKAKD-WRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp CTTC--CCCCCCCCCC-HHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CcccccccCCccCccc-HHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000001110000 000001112345778999999999999999999984
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-17 Score=169.33 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=131.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHH-----------------------------------hhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMK-----------------------------------KLV 450 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~-----------------------------------~Lv 450 (639)
.++|.||++.. ..+..+|+|++..... ....+..|+..++ .+|
T Consensus 30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv 108 (373)
T 1q8y_A 30 GHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 108 (373)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEEecCCCcEEEEEEecCCcc-chhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEE
Confidence 46899999985 5688999999864321 1223333333311 256
Q ss_pred hhcCCCCCchhcccc-CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec------CCcceeecccccc
Q 041082 451 LEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG------NNMVAHLSDFGMA 523 (639)
Q Consensus 451 ~ey~~~gsL~~~l~~-~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~------~~~~~~i~dfgla 523 (639)
+||+ +++|.+++.. ....+++..+..|+.+++.||+|||.. .+|+||||||+||+++ ..+.+||+|||++
T Consensus 109 ~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a 185 (373)
T 1q8y_A 109 FEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNA 185 (373)
T ss_dssp ECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTC
T ss_pred EecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHeEEeccCCCcCcceEEEcccccc
Confidence 7888 7899888865 234589999999999999999999942 2799999999999994 4458999999999
Q ss_pred ccccccCCC--cc----------ccccccccccc--c-------CCCCCCCccCCC-----ccchHHHHHhh--------
Q 041082 524 KLLLKEDQS--FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSG-----EMTLKSWVNDL-------- 569 (639)
Q Consensus 524 ~~~~~~~~~--~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~-----~~~l~~~~~~~-------- 569 (639)
+........ .+ ....+.++||| | ||+.|....... ...+...+...
T Consensus 186 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (373)
T 1q8y_A 186 CWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLL 265 (373)
T ss_dssp EETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHH
T ss_pred cccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHH
Confidence 876543221 00 01123478999 7 888887642111 01111111100
Q ss_pred ---------CCC-Cc-ceeeecccccc---ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 570 ---------LPI-SV-MEVVDVNLLSM---EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 570 ---------~~~-~~-~~~~d~~l~~~---~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.. .. ..+........ .......+..+...+.+++.+|++.+|++|||+.||++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 266 RNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp HHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred hccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 000 00 00000000000 00011123456678889999999999999999999986
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-17 Score=159.61 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=100.6
Q ss_pred CCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 74 NLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 74 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.+.++..+++++|.+++. + .+..+++|+.|++++|.+.. +| .+..+++|++|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 445566677777777643 3 56677777777777777764 34 56777777777777777775544 6666666666
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcc
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 233 (639)
+|++|.++++ |... . ++|+.|++++|.+++. + .++.+++|+.|++++|++++.
T Consensus 91 ~L~~N~l~~l-------------------~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~---- 143 (263)
T 1xeu_A 91 SVNRNRLKNL-------------------NGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI---- 143 (263)
T ss_dssp ECCSSCCSCC-------------------TTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC----
T ss_pred ECCCCccCCc-------------------Cccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC----
Confidence 6666665542 1111 1 5566666666666553 2 355666666666666655432
Q ss_pred hhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCC
Q 041082 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEG 312 (639)
Q Consensus 234 ~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 312 (639)
+.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 144 ----------------------------------~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 ----------------------------------VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----------------------------------GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ----------------------------------hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 1233445566666666665543 344555555555555555543
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=168.93 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=128.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh--hhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++... .|..+|+|.+..... .....+..|+..++ .+|+||++ |
T Consensus 35 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~ 113 (353)
T 3coi_A 35 GAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-T 113 (353)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-E
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-C
Confidence 468999999864 689999999864322 22345555665532 35677876 5
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+.+.. .+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 114 ~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~ 187 (353)
T 3coi_A 114 DLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 187 (353)
T ss_dssp EGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSB
T ss_pred CHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCc
Confidence 77776642 4899999999999999999999 568999999999999999999999999999865432211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--CCC-c-ceeeec-------cccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--PIS-V-MEVVDV-------NLLS 584 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~~~-~-~~~~d~-------~l~~ 584 (639)
.+. ...+.++||| | ||+.|....- ......-+.... +.. . ..+.+. .+..
T Consensus 188 ~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (353)
T 3coi_A 188 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ 265 (353)
T ss_dssp CCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC--HHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCB
T ss_pred CcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcC
Confidence 000 1223478999 6 8888875321 111111110000 000 0 000000 0000
Q ss_pred c-ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 585 M-EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 585 ~-~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. ..............+.+++.+|++.+|++|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 266 TPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp CSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0 00000001122345778889999999999999999985
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=146.16 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=65.0
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCc-cccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
.+++++++++ .+|..+.. +|++|+|++|.+++..|. .|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666664 56665553 788888888888765554 3677777777777777777777777777777777777777
Q ss_pred cCccccCccccCCCCCCEEec
Q 041082 135 FLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~L 155 (639)
++++..+..|.++++|++|+|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEEC
T ss_pred cCCccCHHHhcCCCCCCEEEC
Confidence 777666555555444333333
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-17 Score=178.73 Aligned_cols=209 Identities=22% Similarity=0.222 Sum_probs=133.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-hhhhhhHHHHHHHHH--------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-ERAFKSFDVACDMMK--------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .+|..+|+|++.... ......+..|+.+++ .+|+||+++|+
T Consensus 25 G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggs 104 (676)
T 3qa8_A 25 GGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGD 104 (676)
T ss_dssp CSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCB
T ss_pred CCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCC
Confidence 56889999876 458899999886432 223345666666632 27899999999
Q ss_pred chhccccCC--ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcc---eeeccccccccccccCCCc
Q 041082 459 LEKCLYSSN--YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMV---AHLSDFGMAKLLLKEDQSF 533 (639)
Q Consensus 459 L~~~l~~~~--~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~---~~i~dfgla~~~~~~~~~~ 533 (639)
|.+++.... ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++. +||+|||+++.........
T Consensus 105 L~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~ 181 (676)
T 3qa8_A 105 LRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCT 181 (676)
T ss_dssp HHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCC
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccc
Confidence 999987532 35888889999999999999999 567999999999999996654 9999999998765432110
Q ss_pred ----------cc----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc-ceeeecccccccc--
Q 041082 534 ----------TQ----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV-MEVVDVNLLSMED-- 587 (639)
Q Consensus 534 ----------~~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~-~~~~d~~l~~~~~-- 587 (639)
+. ...+.++||| | ||+.|... +.....|......... ...++....+...
T Consensus 182 ~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~----~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~ 257 (676)
T 3qa8_A 182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP----NWQPVQWHGKVREKSNEHIVVYDDLTGAVKFS 257 (676)
T ss_dssp CCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS----SCHHHHSSTTCC------CCSCCCCSSSCCCC
T ss_pred cccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc----ccchhhhhhhhhcccchhhhhhhhhccccccc
Confidence 00 1123478999 6 89888753 2222334322211110 0011111100000
Q ss_pred ----ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 041082 588 ----KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESV 622 (639)
Q Consensus 588 ----~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~ 622 (639)
............+.+++..|++.+|++|||+.|++
T Consensus 258 ~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 258 SVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp SSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred cccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 00011123455678889999999999999998843
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-17 Score=167.43 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHH-HHH--------------------hhhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACD-MMK--------------------KLVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~-~~~--------------------~Lv~ey~~~gsL~~~l 463 (639)
.++|.||++... +|..+|+|.+..... .....+..+.. .++ .+|+||+++ +|.+++
T Consensus 33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~ 111 (327)
T 3aln_A 33 GAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST-SFDKFY 111 (327)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHH
Confidence 468999999874 688999999865422 12223333333 211 268899985 776665
Q ss_pred cc----CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------
Q 041082 464 YS----SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS------- 532 (639)
Q Consensus 464 ~~----~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~------- 532 (639)
.. ....+++..+.+++.++++||+|||+. .+|+||||||.||+++.++.+||+|||+++........
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~ 189 (327)
T 3aln_A 112 KYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCR 189 (327)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------------
T ss_pred HHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCc
Confidence 42 235689999999999999999999942 27999999999999999999999999999876432211
Q ss_pred ---ccc--------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 533 ---FTQ--------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 533 ---~~~--------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
.+. ...+.++||| | ||+.|..... ...+.+....... .+.+.. ..
T Consensus 190 ~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~-----~~~~~~------~~ 254 (327)
T 3aln_A 190 PYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN----SVFDQLTQVVKGD-----PPQLSN------SE 254 (327)
T ss_dssp ----------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC-----CCCCCC------CS
T ss_pred cccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc----hHHHHHHHHhcCC-----CCCCCC------cc
Confidence 000 0123367777 5 7777764311 0011111100000 000100 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+...+.+++..|++.+|++||++.||++
T Consensus 255 ~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 255 EREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 0112335778889999999999999999985
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-18 Score=189.90 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=75.9
Q ss_pred CCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc
Q 041082 124 AELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF 203 (639)
Q Consensus 124 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 203 (639)
+.++.|+|.+|.+... +.. .|+.++|+.|.|++ ++++.|.+. ..|..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------cccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 4466667777766542 222 24445555554432 233444444 44556666677777777777766
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCC
Q 041082 204 DLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 204 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 283 (639)
. +|..+..+++|++|+|++|.++.++..+ .+ ..+|+.|++++|.++ .+|..++.+++|++|+|++
T Consensus 238 ~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~------~~-------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 238 N-ISANIFKYDFLTRLYLNGNSLTELPAEI------KN-------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp C-CCGGGGGCCSCSCCBCTTSCCSCCCGGG------GG-------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred C-CChhhcCCCCCCEEEeeCCcCcccChhh------hC-------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 3 3444446677777777777666432211 11 124455555555555 3455555666666666666
Q ss_pred CCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCC-CcEEECCCCcCcccCCc
Q 041082 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLAS-LYELDLSGNKLSGSIPT 340 (639)
Q Consensus 284 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~ 340 (639)
|.|+ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 303 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 303 NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6664 44555666666666666666666655555543321 12345556666555554
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-17 Score=172.57 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=129.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .|..||||++..... .+..|+++++ .+|+||+++ ++
T Consensus 65 G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l 139 (420)
T 1j1b_A 65 GSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TV 139 (420)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EH
T ss_pred CCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cH
Confidence 568999999975 589999998854321 1223444432 257888885 55
Q ss_pred hhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCC-cceeeccccccccccccCCCc--
Q 041082 460 EKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNN-MVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 460 ~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~-~~~~i~dfgla~~~~~~~~~~-- 533 (639)
.+.+.. ....+++.....++.++++||+||| ..+|+||||||+|||++.+ +.+||+|||+|+.+.......
T Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~ 216 (420)
T 1j1b_A 140 YRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY 216 (420)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSC
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceee
Confidence 554432 3456899999999999999999999 6789999999999999965 678999999998764332110
Q ss_pred --------cc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC---------Ccceeeecc
Q 041082 534 --------TQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI---------SVMEVVDVN 581 (639)
Q Consensus 534 --------~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~---------~~~~~~d~~ 581 (639)
+. ...+.++||| | ||+.|..... ....+.+.+...- +. ...+.--+.
T Consensus 217 ~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~-~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~ 295 (420)
T 1j1b_A 217 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQ 295 (420)
T ss_dssp CSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCC
T ss_pred eeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCc
Confidence 00 1123478999 6 8888875321 1112222222111 00 001111111
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+....-. ..........+.+++.+|++.+|++||++.|+++
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 296 IKAHPWT-KVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp CCCCCHH-HHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCCCHH-HhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 1100000 0000111245778999999999999999999985
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-18 Score=172.55 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=126.2
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhh------hhhHHHHHHHHH----------------------hhhhhcCCC-
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERA------FKSFDVACDMMK----------------------KLVLEYMPH- 456 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~------~~~f~~e~~~~~----------------------~Lv~ey~~~- 456 (639)
.++|.||++.. .++..+|+|.+....... ...+..|+..++ .+|+||+..
T Consensus 54 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~ 133 (320)
T 3a99_A 54 GGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPV 133 (320)
T ss_dssp SSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSE
T ss_pred CCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCC
Confidence 56899999975 568899999987543211 122333444332 257788875
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCCc--
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
++|.+++.. ...+++..+..++.++++||+||| ..+|+||||||+||+++ +++.+||+|||+++.........
T Consensus 134 ~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~ 209 (320)
T 3a99_A 134 QDLFDFITE-RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD 209 (320)
T ss_dssp EEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCC
T ss_pred ccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCC
Confidence 788888764 235889999999999999999999 56899999999999999 78999999999998765432210
Q ss_pred -c------c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 -T------Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 -~------~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+ . ...+.+.||| | ||+.|.... .+.... ....
T Consensus 210 gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~-------~~~~~~------------~~~~-------- 262 (320)
T 3a99_A 210 GTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD-------EEIIRG------------QVFF-------- 262 (320)
T ss_dssp SCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHHC------------CCCC--------
T ss_pred CCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh-------hhhhcc------------cccc--------
Confidence 0 0 0012356777 5 666665321 011110 0000
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.+++.+|++.+|++||++.||++
T Consensus 263 ~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 263 RQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0011224667888999999999999999986
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=148.13 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=114.5
Q ss_pred CCCCcCccceecCCCC---------CcEEEEEeCCCCCcccCCc-CCCCCCCCCEEeccCCcCCccCCccccCCccccee
Q 041082 36 SSTVCHWTGVSCDVRS---------YRVTTLNISGLSLTSTIPS-ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSI 105 (639)
Q Consensus 36 ~~~~c~w~gv~c~~~~---------~~v~~L~L~~~~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 105 (639)
..+.|.|..+.|+... .+++.|++++|.+++..+. .|+.+++|++|+|++|.|++..|..|.++++|+.|
T Consensus 4 ~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 3456889999997532 3788999999999887665 48999999999999999999999999999999999
Q ss_pred eccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 106 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
+|++|++.+..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|.++.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999999999999999999999999999999999999999999888874
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-17 Score=172.06 Aligned_cols=208 Identities=22% Similarity=0.277 Sum_probs=128.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL~ 460 (639)
.++|.||++....+..+|+|++...... ...|+.+++ .+|+||++++.+.
T Consensus 51 G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~ 126 (394)
T 4e7w_A 51 GSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYR 126 (394)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHH
T ss_pred CCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHH
Confidence 4689999999877777999987533211 123444422 2688898865333
Q ss_pred hccc--cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCC----c
Q 041082 461 KCLY--SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQS----F 533 (639)
Q Consensus 461 ~~l~--~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~----~ 533 (639)
...+ .....+++.....++.++++||+||| ..+|+||||||+||+++ .++.+||+|||+|+........ .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~ 203 (394)
T 4e7w_A 127 ASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYIC 203 (394)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCS
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCccccc
Confidence 2221 12346889999999999999999999 56899999999999999 7999999999999876433211 0
Q ss_pred c-----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC-cceeeecc--------cc
Q 041082 534 T-----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS-VMEVVDVN--------LL 583 (639)
Q Consensus 534 ~-----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~-~~~~~d~~--------l~ 583 (639)
+ ....+.++||| | +|+.|....- ....+.+.+...- +.. .....++. +.
T Consensus 204 t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~-~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 282 (394)
T 4e7w_A 204 SRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGES-GIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIR 282 (394)
T ss_dssp CGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCC
T ss_pred CcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhCCCCHHHHHhhChhhhhhcccccc
Confidence 0 01123478998 6 8888875321 1111222222111 000 00000110 00
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...- ...........+.+++.+|++.+|++|||+.|+++
T Consensus 283 ~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 283 PHPF-SKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp CCCH-HHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCcH-HHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 0000 00000112345778999999999999999999985
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=144.01 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=99.9
Q ss_pred CCCCCEEeccCCcCC-ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEE
Q 041082 75 LSSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 153 (639)
.++|++|+|++|.++ +.+|..+..+++|+.|++++|.+.+. ..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367888888888887 67787788888888888888887765 667888888888888888887777777777777777
Q ss_pred ecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc---cccCCCCCCCEEEccCCCCCCC
Q 041082 154 DLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP---NTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 154 ~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
+|++|.++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 101 ~Ls~N~l~~~~-----------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDIS-----------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSG-----------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcch-----------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777666431 11445666777777777777776655 4677777888888877776654
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=165.71 Aligned_cols=116 Identities=23% Similarity=0.301 Sum_probs=92.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh-hhhhhhHHHHHHHHH-------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY-ERAFKSFDVACDMMK-------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~-~~~~~~f~~e~~~~~-------------------------~Lv~ey~~~gsL 459 (639)
.++|.||++... .+..+|+|++.... ......+..|+..++ .+|+||++ |+|
T Consensus 38 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L 116 (364)
T 3qyz_A 38 GAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDL 116 (364)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEH
T ss_pred CCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCH
Confidence 568999999754 67899999986432 222345666666643 25677776 578
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
.+++.. ..+++..+..|+.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++....
T Consensus 117 ~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 180 (364)
T 3qyz_A 117 YKLLKT--QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP 180 (364)
T ss_dssp HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecCC
Confidence 777754 35899999999999999999999 56899999999999999999999999999987653
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-17 Score=169.80 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=84.1
Q ss_pred CCcCcceEEEec---CCceeeeEEechhhhhhhhhHHHHHHHHHh----------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQYERAFKSFDVACDMMKK----------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~~~~~~~f~~e~~~~~~----------------------Lv~ey~~~gsL~~ 461 (639)
.++|.||++... .+..+|+|.+.... ....+..|+.+++. +|+||++ |+|.+
T Consensus 32 G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~ 108 (405)
T 3rgf_A 32 GTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWH 108 (405)
T ss_dssp ----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHH
T ss_pred cCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHH
Confidence 468999999875 46889999986432 22355666666432 5788886 47766
Q ss_pred cccc--------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceee----cCCcceeeccccccccccc
Q 041082 462 CLYS--------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLL----GNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 462 ~l~~--------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill----~~~~~~~i~dfgla~~~~~ 528 (639)
.+.. ....+++..+..|+.+++.||+||| ..+|+||||||+||++ +.++.+||+|||+|+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~ 184 (405)
T 3rgf_A 109 IIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 184 (405)
T ss_dssp HHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCC
Confidence 6542 1124899999999999999999999 5679999999999999 6789999999999987643
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=166.14 Aligned_cols=213 Identities=19% Similarity=0.222 Sum_probs=127.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHH---------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMM---------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~---------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++... .|..+|||++...... ...+..++..+ ..+||||+++ +
T Consensus 34 G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~ 111 (360)
T 3e3p_A 34 GTFGTVQLGKEKSTGMSVAIKKVIQDPRF-RNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-T 111 (360)
T ss_dssp -----CEEEEETTTCCEEEEEEEECCTTC-CCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-B
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecCccc-cHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc-c
Confidence 468999999874 5889999988543221 22233333321 2368899986 4
Q ss_pred chhcccc---CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCc-
Q 041082 459 LEKCLYS---SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSF- 533 (639)
Q Consensus 459 L~~~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~- 533 (639)
+...+.. ....+++.....++.+++.|++|||. ...+|+||||||+||+++. ++.+||+|||+++.........
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~ 190 (360)
T 3e3p_A 112 LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVA 190 (360)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCS
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCccc
Confidence 4443322 34568889999999999999999993 2567999999999999997 8999999999998765432210
Q ss_pred ---c------c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCC--cceeeeccccccc--
Q 041082 534 ---T------Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPIS--VMEVVDVNLLSME-- 586 (639)
Q Consensus 534 ---~------~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~--~~~~~d~~l~~~~-- 586 (639)
+ . ...+.++||| | ||+.|....- ....+..+++...... ....+++......
T Consensus 191 ~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (360)
T 3e3p_A 191 YICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN-SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLY 269 (360)
T ss_dssp TTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGG
T ss_pred ccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC-hHHHHHHHHHHcCCCCHHHHHhcccchhhcccc
Confidence 0 0 1124478999 6 8888875421 1112222222111100 0011111100000
Q ss_pred --------cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 --------DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 --------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.............+.+++.+|++.+|++|||+.||++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 270 NSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp CCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 0000001123456888999999999999999999985
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=167.05 Aligned_cols=209 Identities=21% Similarity=0.226 Sum_probs=118.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
.++|.||++.. ..|..||+|++.... ......+..|+..++. +|+||+ ++
T Consensus 40 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~ 118 (367)
T 2fst_X 40 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GA 118 (367)
T ss_dssp ---CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CE
T ss_pred cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CC
Confidence 46899999974 568899999986432 2223455566665432 456666 56
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+++.. ..+++..+..++.++++||+||| ..+|+||||||+||+++.++.+||+|||+|+........
T Consensus 119 ~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~ 193 (367)
T 2fst_X 119 DLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATR 193 (367)
T ss_dssp ECC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC---------------CCC
T ss_pred CHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCc
Confidence 78777754 45899999999999999999999 568999999999999999999999999999875432211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCc----ceeeec-------cccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISV----MEVVDV-------NLLS 584 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~----~~~~d~-------~l~~ 584 (639)
.+. ...+.++||| | ||+.|.... +.......+........ ..+-.. .+..
T Consensus 194 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 271 (367)
T 2fst_X 194 WYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ 271 (367)
T ss_dssp TTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCC
T ss_pred CccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCC
Confidence 000 1223478999 6 888887531 11111111111111100 000000 0000
Q ss_pred ccccc-ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 585 MEDKY-FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 585 ~~~~~-~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ..........+.++..+|++.+|++|||+.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 272 MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp CCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00000 0000011234678889999999999999999985
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-17 Score=169.32 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=127.8
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++... .|..+|+|++.... ......+..|+..++ .+|+||+. |
T Consensus 53 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~ 131 (371)
T 4exu_A 53 GAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-T 131 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-E
T ss_pred CCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-c
Confidence 568999999754 68999999986532 222345556665532 36777876 5
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----- 532 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----- 532 (639)
+|.+.+. ..+++..+..++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+++........
T Consensus 132 ~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~ 205 (371)
T 4exu_A 132 DLQKIMG---MEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTR 205 (371)
T ss_dssp EHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCC
T ss_pred cHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCc
Confidence 7766663 24899999999999999999999 568999999999999999999999999999866433211
Q ss_pred ---ccc-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC-Ccceeeec--------ccccc
Q 041082 533 ---FTQ-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI-SVMEVVDV--------NLLSM 585 (639)
Q Consensus 533 ---~~~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~-~~~~~~d~--------~l~~~ 585 (639)
.+. ...+.++||| | ||+.|....- ....+...+...- +. ...+.++. .+...
T Consensus 206 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T 4exu_A 206 WYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD-YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQT 284 (371)
T ss_dssp TTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCC
T ss_pred cccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCC
Confidence 000 1223478998 6 8888875321 0001111111000 00 00000000 00000
Q ss_pred c-cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 E-DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~-~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. .............+.+++.+|++.+|++|||+.|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 285 PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp CCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 0 0000000112346778999999999999999999985
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=160.99 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=125.9
Q ss_pred CCCCCEEeccCCcCCccCCccccC-CcccceeeccCCcCC--CCCCccccCCCCCcEEecccccCccccCccccC-----
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFN-MSSLLSIYFNNNTLF--GEIPEELGNLAELETLWLQNNFLTGTIHSSIFN----- 146 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----- 146 (639)
+.+++.|.++++- ....-..+.. +++|+.|+|++|++. ...+.. ++.+..+.+..|.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhccccccc
Confidence 6678888887642 1111122223 667778888877776 222222 22244444444422 2234444
Q ss_pred ---CCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccC
Q 041082 147 ---LSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYD 223 (639)
Q Consensus 147 ---l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (639)
+++|+.|+|.. .++ ..-+.+|.++++|+.+++++|.+..+.+.+|..+.++..+.+..
T Consensus 97 ~~g~~~L~~l~L~~-~i~------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCC------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-ccc------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666655 443 33345566677777777777777666666777666666555544
Q ss_pred CCC----CCCCCcchhhccccCCc---------chh-------hhccCccEEEeecCccccccchhh-cCCCCCCEEECC
Q 041082 224 NYL----TSSTPELSFLYSLSNCK---------YLE-------QSSQSLEVFSMFNCNISGGILEEI-SNLTNLTAIYLA 282 (639)
Q Consensus 224 N~l----~~~~~~~~~~~~l~~l~---------~l~-------~~~~~l~~l~l~~n~l~~~~~~~~-~~l~~L~~L~Ls 282 (639)
+.. ...... .+..+..+. .+. ....++..+.+.++-. ......+ ..+++|+.++++
T Consensus 158 ~~~~~~~~~i~~~--~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 158 SDAYRFKNRWEHF--AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp THHHHTSTTTTTS--CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECT
T ss_pred hhhhhcccccccc--ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECC
Confidence 211 100000 000000000 000 0012223333322211 0001111 124455555555
Q ss_pred CCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCc-EEECCCCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 041082 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY-ELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISI 361 (639)
Q Consensus 283 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 361 (639)
+|.++...+..|..+.+|+.+++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 55555444444555555555555544 4434444555555555 555544 44444445555555555555555555555
Q ss_pred chhhhhcCCCCcEEE
Q 041082 362 IPSTLWNLKDILYLN 376 (639)
Q Consensus 362 ~p~~~~~l~~L~~L~ 376 (639)
.+..|.++++|+.++
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 444555555554443
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-17 Score=173.16 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=120.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.|+.....++..||||++..... ..+..|+.+++ .+|+||++ |+|.+++..
T Consensus 35 G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~ 110 (432)
T 3p23_A 35 GAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQ 110 (432)
T ss_dssp CGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHS
T ss_pred CcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHh
Confidence 457876656666789999999864332 22344454432 36889996 699998876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-----CCcceeeccccccccccccCCC--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-----NNMVAHLSDFGMAKLLLKEDQS-------- 532 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-----~~~~~~i~dfgla~~~~~~~~~-------- 532 (639)
......+.....++.++++||+||| +.+|+||||||+||+++ +...+||+|||+|+........
T Consensus 111 ~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~ 187 (432)
T 3p23_A 111 KDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVP 187 (432)
T ss_dssp SSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CC
T ss_pred cCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccC
Confidence 5444555556789999999999999 56799999999999994 3346889999999876533210
Q ss_pred ------ccc-------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccc
Q 041082 533 ------FTQ-------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKY 589 (639)
Q Consensus 533 ------~~~-------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 589 (639)
.+. ...+.++||| | | |+.|...... ............+...+
T Consensus 188 gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~------~~~~~~~~~~~~~~~~~--------- 252 (432)
T 3p23_A 188 GTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ------RQANILLGACSLDCLHP--------- 252 (432)
T ss_dssp SCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT------HHHHHHTTCCCCTTSCT---------
T ss_pred CCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH------HHHHHHhccCCccccCc---------
Confidence 000 0112256777 5 5 6665532110 11111111100011100
Q ss_pred ccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 590 ~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....-..+.+++.+|++.+|++|||+.||++
T Consensus 253 ---~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 253 ---EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ---TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ---cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 1122334678899999999999999999983
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-17 Score=168.67 Aligned_cols=186 Identities=22% Similarity=0.260 Sum_probs=125.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh------hhhhHHHHHHHHH------------------------hhhhhc-C
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER------AFKSFDVACDMMK------------------------KLVLEY-M 454 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~------~~~~f~~e~~~~~------------------------~Lv~ey-~ 454 (639)
.++|.||++.. .++..+|+|.+...... ....+..|+..++ .+|+|| +
T Consensus 42 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~ 121 (312)
T 2iwi_A 42 GGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPL 121 (312)
T ss_dssp ETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCS
T ss_pred CCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecC
Confidence 46889999975 46789999998644221 1112222332211 257788 7
Q ss_pred CCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCCc
Q 041082 455 PHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQSF 533 (639)
Q Consensus 455 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~~ 533 (639)
++++|.+++... ..+++..+..++.++++||+||| ..+|+|||||++||+++ .++.+||+|||+++.........
T Consensus 122 ~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~ 197 (312)
T 2iwi_A 122 PAQDLFDYITEK-GPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTD 197 (312)
T ss_dssp SEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCC
T ss_pred CCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccc
Confidence 889999988652 35899999999999999999999 55799999999999999 88999999999998765432210
Q ss_pred c--------------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 534 T--------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 534 ~--------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
. ....+.++||| | ||+.|.... .+... ....-
T Consensus 198 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~------------~~~~~------ 252 (312)
T 2iwi_A 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD-------QEILE------------AELHF------ 252 (312)
T ss_dssp CCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------HHHHH------------TCCCC------
T ss_pred cCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh-------HHHhh------------hccCC------
Confidence 0 00112257777 5 666665321 01111 00000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+......+.+++.+|++.+|++||++.|+++
T Consensus 253 --~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 253 --PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp --CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred --cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0111234667888999999999999999986
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=166.49 Aligned_cols=203 Identities=20% Similarity=0.179 Sum_probs=127.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.++|.||++.. ..+..+|||++.... ......+..|+..++ .+|+||+++
T Consensus 36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~- 114 (371)
T 2xrw_A 36 GAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA- 114 (371)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-
T ss_pred cCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCCC-
Confidence 46889999975 468899999986432 222344556665532 367788864
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC----c
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS----F 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~----~ 533 (639)
+|.+.+.. .+++.....++.+++.||+||| ..+|+||||||+||+++.++.+||+|||+|+........ .
T Consensus 115 ~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g 188 (371)
T 2xrw_A 115 NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 188 (371)
T ss_dssp EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---------------
T ss_pred CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCcee
Confidence 67666642 4889999999999999999999 568999999999999999999999999999876433111 0
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhh--CCCC-------------------
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDL--LPIS------------------- 573 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~--~~~~------------------- 573 (639)
+ ....+.++||| | ||+.|.... .....|.... ....
T Consensus 189 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (371)
T 2xrw_A 189 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT----DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENR 264 (371)
T ss_dssp -CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSS
T ss_pred cCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhC
Confidence 0 01123478999 6 888887532 1111111110 0000
Q ss_pred -------cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 -------VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 -------~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+....... ..+........+.++..+|++.+|++|||+.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 265 PKYAGYSFEKLFPDVLFPA---DSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp CCCCCCCHHHHSCGGGSCC---SSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccccccchhhhcccccCcc---cccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000000000000 00111233567889999999999999999999986
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=141.85 Aligned_cols=132 Identities=23% Similarity=0.352 Sum_probs=94.9
Q ss_pred CCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 37 STVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.+.|.|.++.|+. ++++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+.+..
T Consensus 4 ~C~C~~~~l~~~~------------~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECCS------------SCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEecC------------CCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 3557788887764 3343 2443333 57788888888887666666777888888888888887766
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCC------CCCccEEEccCCccCccCC
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ------IPNLENLLLWGNNFSGAIP 183 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------l~~L~~L~L~~N~l~~~~p 183 (639)
+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.++.+. +++|+.|+|++|.+.+..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666778888888888888887766666777888888888888777642 5678888888888876554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-16 Score=177.75 Aligned_cols=199 Identities=24% Similarity=0.238 Sum_probs=127.1
Q ss_pred CCcCcceEEEec--CCceeeeEEechhh-hhhhhhHHHHHHHH-------------------------HhhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ--DGMKVAVKVFDLQY-ERAFKSFDVACDMM-------------------------KKLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~--~g~~vavK~l~~~~-~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gs 458 (639)
.++|.||++... ++..|+||++.... ......+..|...+ ..+||||+++++
T Consensus 91 G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~ 170 (681)
T 2pzi_A 91 GGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQS 170 (681)
T ss_dssp ETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEE
T ss_pred CCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCc
Confidence 578999999875 58899999885432 22233455555542 258899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc--
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ-- 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~-- 535 (639)
|.+++.. .++|.++..|+.++++||+||| ..+|+||||||+||+++.+ .+||+|||+++........ .+.
T Consensus 171 L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~~gt~~y 243 (681)
T 2pzi_A 171 LKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGF 243 (681)
T ss_dssp CC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCCCCCTTT
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhcccCCccCCCccc
Confidence 9887754 6899999999999999999999 5679999999999999986 8999999999876543211 000
Q ss_pred -------cccccccccccCCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHHHHhhcc
Q 041082 536 -------NTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECT 608 (639)
Q Consensus 536 -------~~~~~~~dvyGtg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~ 608 (639)
...+.++||| +-|..+.+.+....+.. ....+ .+... .........+.+++.+|+
T Consensus 244 ~aPE~~~~~~~~~sDi~-----------slG~~l~~l~~g~~~~~-~~~~~-~~~~~-----~~~~~~~~~l~~li~~~l 305 (681)
T 2pzi_A 244 QAPEIVRTGPTVATDIY-----------TVGRTLAALTLDLPTRN-GRYVD-GLPED-----DPVLKTYDSYGRLLRRAI 305 (681)
T ss_dssp SCTTHHHHCSCHHHHHH-----------HHHHHHHHHHSCCCEET-TEECS-SCCTT-----CHHHHHCHHHHHHHHHHT
T ss_pred cCHHHHcCCCCCceehh-----------hhHHHHHHHHhCCCCCc-ccccc-ccccc-----ccccccCHHHHHHHhhhc
Confidence 0012245555 33333333322111100 00000 00000 001122345778899999
Q ss_pred CCCCCCCCC-HHHHHHHHHHhHH
Q 041082 609 AESPKQRIN-AKESVTRLLKIRD 630 (639)
Q Consensus 609 ~~~p~~RP~-m~~v~~~l~~~~~ 630 (639)
+.+|++||+ +.++.+.+..+..
T Consensus 306 ~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 306 DPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp CSSGGGSCSSHHHHHHHHHHHHH
T ss_pred cCChhhCCCHHHHHHHHHHHHHH
Confidence 999999995 6666677766643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-16 Score=140.47 Aligned_cols=128 Identities=23% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCEEeccCCcCC-ccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 76 SSLQTLDLSFNWFS-GSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..++.+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555555555555555544 4455556666666666666554555555555555555
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCc---cccCCCCCCCEEEcc
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP---NTFGNLINLKRLNLY 222 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls 222 (639)
+++|.++++ ..+..+..+++|+.|++++|.+++..+ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555544431 012334445555555555555555444 345556666666554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=138.65 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=73.7
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.+++++++++ .+|..+. ++|++|+|++|.++ .+|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566667776 4666554 57888888888887 677788888888888888888887777778888888888888888
Q ss_pred CccccCccccCCCCCCEEecCCCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
+++..|..|.++++|++|+|++|.|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 87766666666555555555544443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=141.00 Aligned_cols=126 Identities=31% Similarity=0.376 Sum_probs=112.1
Q ss_pred CCCCCcCccceecCCC---------CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCccccee
Q 041082 35 TSSTVCHWTGVSCDVR---------SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSI 105 (639)
Q Consensus 35 ~~~~~c~w~gv~c~~~---------~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 105 (639)
+..+.|.|..+.|+.. ...++.|+|++|.++ .+|..|.++++|++|+|++|.|++..|..|.++++|+.|
T Consensus 5 P~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 5 PTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 3445677888888653 236899999999998 678899999999999999999998888899999999999
Q ss_pred eccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCC
Q 041082 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 106 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999999999999999999999999999877778889999999988888775
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-15 Score=135.41 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=108.2
Q ss_pred CCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 78 LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 78 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.+.+++++|.+. .+|..+. ++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478899999988 5665554 6899999999999887777889999999999999999877776777777776666666
Q ss_pred CCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 158 NNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 158 N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
|.|+ +..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 86 N~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQ------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcc------------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6554 4555667788999999999999998877778889999999999999887544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=135.78 Aligned_cols=132 Identities=23% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCCCEEECCCCCCC-ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEe
Q 041082 274 TNLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILS 352 (639)
Q Consensus 274 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 352 (639)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44455555555555555555555543 4455555555555555555554555555555555555
Q ss_pred CCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCc---cccccccccccccccCCCCC
Q 041082 353 LDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLP---LEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 353 l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~ls~N~l~ 407 (639)
+++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555322 445555555555555555554433 34555555666666555543
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-15 Score=153.88 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=65.3
Q ss_pred hhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc---------------
Q 041082 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM--------------- 513 (639)
Q Consensus 449 Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~--------------- 513 (639)
+||||+++|++.+.+.. ..+++.....|+.+++.||+|||+ ..+|+||||||+|||++.++
T Consensus 139 lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~ 214 (336)
T 2vuw_A 139 IVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTI 214 (336)
T ss_dssp EEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEE
T ss_pred EEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccc
Confidence 67899999977776643 457999999999999999999993 23699999999999999886
Q ss_pred -----ceeeccccccccccc
Q 041082 514 -----VAHLSDFGMAKLLLK 528 (639)
Q Consensus 514 -----~~~i~dfgla~~~~~ 528 (639)
.+||+|||+|+....
T Consensus 215 ~~~~~~vkL~DFG~a~~~~~ 234 (336)
T 2vuw_A 215 PSCGLQVSIIDYTLSRLERD 234 (336)
T ss_dssp ECTTEEEEECCCTTCBEEET
T ss_pred cCCCceEEEeeccccEecCC
Confidence 999999999987654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=150.96 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=62.4
Q ss_pred hhcCCCCCCEEECCCCCCCccccccccCCcCCc-EEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 269 EISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQ-LLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 269 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
.|..+++|+.+++.+| ++...+.+|.++.+|+ .+.+.+ +++...+.+|.++++|+.+++++|.++.+.+.+|.++++
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 4556667777777776 6555566777788887 888876 666666778888888888888888888777888888888
Q ss_pred CCEEe
Q 041082 348 LRILS 352 (639)
Q Consensus 348 L~~L~ 352 (639)
|+.+.
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 88775
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-15 Score=132.54 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=64.1
Q ss_pred CCCEEECCCCCCC-ccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeC
Q 041082 275 NLTAIYLAGNKLN-GSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353 (639)
Q Consensus 275 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 353 (639)
+|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..++.+++|+.|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4445555555554 34444444555555555555555443 34445555555555555555444444444555555555
Q ss_pred CCCcCccc-chhhhhcCCCCcEEEcccCCCCCCCc---ccccccccccccccc
Q 041082 354 DSNKLISI-IPSTLWNLKDILYLNLSSNFFISPLP---LEIGNLKVLVGIDLS 402 (639)
Q Consensus 354 ~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~l~ls 402 (639)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555543 23445555555555555555554433 345555555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=133.45 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=84.9
Q ss_pred CCCCCCCCEEeccCCcCCccCCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCC
Q 041082 72 LGNLSSLQTLDLSFNWFSGSIPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150 (639)
Q Consensus 72 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 150 (639)
+.++++|++|++++|.++. +|. +..+. +|+.|++++|.+.+. ..|+.+++|++|+|++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556677777777777773 443 44444 777777777777664 567777777777777777776554555666666
Q ss_pred CEEecCCCCCCCCCCCCccEEEccCCccCccCCc--cccCCCCCcEEEcccCCCcccCcc----ccCCCCCCCEEEccCC
Q 041082 151 SDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPH--FIFNASKLSILELQKNSFFDLIPN----TFGNLINLKRLNLYDN 224 (639)
Q Consensus 151 ~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N 224 (639)
++|+|++|.|+. +|. .+..+++|+.|++++|.+... |. .+..+++|+.|++++|
T Consensus 91 ~~L~L~~N~i~~-------------------~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVE-------------------LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCC-------------------GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCc-------------------chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence 666666666643 222 455566677777777766543 33 3666777777777766
Q ss_pred CC
Q 041082 225 YL 226 (639)
Q Consensus 225 ~l 226 (639)
..
T Consensus 151 ~~ 152 (176)
T 1a9n_A 151 KL 152 (176)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=136.58 Aligned_cols=252 Identities=12% Similarity=0.106 Sum_probs=123.2
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
+..++.+.+.+ .++..-+.+|.+. +|+.+.+..+ +.......|.+. +|+.+.|.. .++.+-+..|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566666643 3443444555553 5777776655 444445556663 577777764 55555556666666666666
Q ss_pred cCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcch
Q 041082 155 LSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELS 234 (639)
Q Consensus 155 Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 234 (639)
|+.|.++. .....|. .++|+.+.+..+ +..+...+|.++++|+.+++..| ++.+.....
T Consensus 187 l~~n~l~~------------------I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 187 LSKTKITK------------------LPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CTTSCCSE------------------ECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred cCCCcceE------------------echhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 66655543 2222333 466777777633 55566667777777777777653 222211110
Q ss_pred hhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCC-----ccccccccCCcCCcEEEccCCc
Q 041082 235 FLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLN-----GSIPITLCKLQKLQLLSFVDNK 309 (639)
Q Consensus 235 ~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~ 309 (639)
.+ .+|+.+.+ .+++...-...|..+++|+.+.+.+|.+. ...+..|..+.+|+.+.+. +.
T Consensus 246 -----~~--------~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 246 -----RE--------SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp -----TT--------CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred -----cc--------CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 00 13334443 12222222334455555555555554433 1223344444444444444 22
Q ss_pred CCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcC
Q 041082 310 LEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNL 369 (639)
Q Consensus 310 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l 369 (639)
+...-..+|.++++|+.+.+..| ++.+.+.+|.++ +|+.+++++|.+....+..|.++
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 33333344444444444444332 333334444444 44444444444444333333333
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.00 Aligned_cols=104 Identities=27% Similarity=0.275 Sum_probs=92.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.++++++.++. +|..+. ++|++|+|++|.|++..|..|.++++|+.|+|++|++.+..|..|.++++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 56777788874 676664 899999999999999889999999999999999999998888889999999999999999
Q ss_pred CccccCccccCCCCCCEEecCCCCCCC
Q 041082 136 LTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 136 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|++..+..|..+++|++|+|++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 998888789999999998888888764
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-16 Score=149.46 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=91.8
Q ss_pred cEEEEEeCCCCCcccCCc------CCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCC
Q 041082 53 RVTTLNISGLSLTSTIPS------ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAEL 126 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 126 (639)
+++.++++.+.++|.+|. .|+.+++|++|+|++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344555555555555554 66667777777777777765 55 6667777777777777665 456666666677
Q ss_pred cEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCC-ccccCCCCCcEEEcccCCCccc
Q 041082 127 ETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIP-HFIFNASKLSILELQKNSFFDL 205 (639)
Q Consensus 127 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ 205 (639)
++|+|++|++++ +| .+..+++|++|++++|.++. ..+ ..+..+++|+.|++++|.+.+.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~------------------~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN------------------WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC------------------HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc------------------hhHHHHHhcCCCCCEEEecCCccccc
Confidence 777777777765 23 45555555555555555443 211 3455666777777777776655
Q ss_pred Cccc----------cCCCCCCCEEEccCCCCC
Q 041082 206 IPNT----------FGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 206 ~p~~----------~~~l~~L~~L~Ls~N~l~ 227 (639)
.|.. +..+++|+.|+ +|.++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4432 56677777775 44444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=134.83 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=184.9
Q ss_pred CCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCc
Q 041082 63 SLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHS 142 (639)
Q Consensus 63 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 142 (639)
+++..-+..|.+. +|+.+.+..| ++..-..+|.+ .+|+.+.+.. .+....+..|.++++|+.++|.+|+++.+...
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 3444445567775 7999999877 76566667777 4799999986 67767778899999999999999999866555
Q ss_pred cccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC
Q 041082 143 SIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL 216 (639)
Q Consensus 143 ~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 216 (639)
.|. ..+|+.+.|..+ ++.+ .+++|+.+.+..| ++..-..+|.+ .+|+.+.+ .+.+..+.+.+|.++++|
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTC
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCC
Confidence 555 689999999854 5442 2567777777764 44444455555 67888887 455666666777778888
Q ss_pred CEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccC
Q 041082 217 KRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCK 296 (639)
Q Consensus 217 ~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 296 (639)
+.+.+.+|.+.... ........|..+++|+.+.+. +.++......|.+
T Consensus 274 ~~l~l~~~~~~~~~-------------------------------~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~ 321 (401)
T 4fdw_A 274 AEVTTYGSTFNDDP-------------------------------EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG 321 (401)
T ss_dssp CEEEEESSCCCCCT-------------------------------TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred CEEEeCCccccCCc-------------------------------ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence 88887776554110 001223467788889999998 4576666778889
Q ss_pred CcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCC-CCCEEeCCCCcC
Q 041082 297 LQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQT-SLRILSLDSNKL 358 (639)
Q Consensus 297 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l 358 (639)
+.+|+.+.+..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 999999999654 666667889999 999999999988877788888874 678888776654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=158.67 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCceeeeEEechhh----------hhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccccCC
Q 041082 419 DGMKVAVKVFDLQY----------ERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 419 ~g~~vavK~l~~~~----------~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~~~ 467 (639)
-|..+++|++.... ......|..|++.++ +|||||+++|+|.+.+...
T Consensus 258 fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~- 336 (569)
T 4azs_A 258 FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAG- 336 (569)
T ss_dssp ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTT-
T ss_pred ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhC-
Confidence 36788999885431 233456888888754 3799999999999999753
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccccc
Q 041082 468 YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKE 529 (639)
Q Consensus 468 ~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~ 529 (639)
..++.. +|+.+|+.||+|+| ..+|+||||||.|||+++++.+||+|||+|+....+
T Consensus 337 ~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 337 EEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp CCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred CCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 345553 58999999999999 678999999999999999999999999999976544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=125.37 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=93.8
Q ss_pred EEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccc
Q 041082 55 TTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNN 134 (639)
Q Consensus 55 ~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (639)
+.++++++.++ .+|..+. ++|++|+|++|.|++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56899999996 5777775 89999999999999988999999999999999999999877777899999999999999
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
+|++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9998777779999999998888888764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=126.86 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=95.7
Q ss_pred hcCCCCCCEEECCCCCCCccccccccCC-cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCC
Q 041082 270 ISNLTNLTAIYLAGNKLNGSIPITLCKL-QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348 (639)
Q Consensus 270 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 348 (639)
+.++++|+.|++++|.++. +|. +..+ ++|+.|++++|++++. ..|..+++|+.|++++|.+++..|..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3456677888888888774 343 3344 3788888888888764 567778888888888888886655656778888
Q ss_pred CEEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCcc----ccccccccccccccCCCCC
Q 041082 349 RILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLPL----EIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 349 ~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~l~ls~N~l~ 407 (639)
++|++++|.+....+ ..+..+++|+.|++++|.+.. +|. .+..++.|+.||++.|.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888855332 267778888888888888764 444 3777888888888877653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=117.93 Aligned_cols=107 Identities=31% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCC
Q 041082 276 LTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDS 355 (639)
Q Consensus 276 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 355 (639)
.+.+++++|.++. +|..+ .++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456666666653 44443 25667777777777776677777777777777777777766666667777777777777
Q ss_pred CcCcccchhhhhcCCCCcEEEcccCCCCCC
Q 041082 356 NKLISIIPSTLWNLKDILYLNLSSNFFISP 385 (639)
Q Consensus 356 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 385 (639)
|+++++.+..|..+++|++|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777776666677777777777777776543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-15 Score=140.07 Aligned_cols=133 Identities=22% Similarity=0.243 Sum_probs=101.3
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
..+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++ +| .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 377788888888888888876 56 7778888888888888887 466677777888888888888886 34 5777888
Q ss_pred CCEEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCCccc----------cccccccccccccCCCCC
Q 041082 348 LRILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPLPLE----------IGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 348 L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~----------~~~l~~L~~l~ls~N~l~ 407 (639)
|++|++++|++.+..+ ..+..+++|++|++++|++.+.+|.. +..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888877544 56778888888888888887665542 66777777776 45443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=134.23 Aligned_cols=109 Identities=21% Similarity=0.178 Sum_probs=93.9
Q ss_pred CcCccceecCCCCCcEEEEEeCCC-CCcccCCcCCCCCCCCCEEeccC-CcCCccCCccccCCcccceeeccCCcCCCCC
Q 041082 39 VCHWTGVSCDVRSYRVTTLNISGL-SLTSTIPSELGNLSSLQTLDLSF-NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 39 ~c~w~gv~c~~~~~~v~~L~L~~~-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
.|.|..|.|+ ++ +|++ +|. |+.+++|++|+|++ |.|++..|..|.++++|+.|+|++|+|.+..
T Consensus 7 ~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 4777777665 34 5664 787 99999999999996 9999888899999999999999999999999
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCC
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
|..|.+|++|+.|+|++|+|++..+..|..++ |+.|+|.+|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999999999999977666666665 8888888888763
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-13 Score=132.92 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh------------------hhhhhHHHHHHHHH----------------hhhhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE------------------RAFKSFDVACDMMK----------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~------------------~~~~~f~~e~~~~~----------------~Lv~e 452 (639)
+++|.||++...+|..+|+|.+..... .....+..|...++ .+|||
T Consensus 101 G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~~~~~~~~~lvmE 180 (282)
T 1zar_A 101 GKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLME 180 (282)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEE
T ss_pred CCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCeEEeccceEEEEE
Confidence 468899999987789999999864321 12234556666543 36899
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
|+++|+|.+ +.. .....++.++++||+||| ..+|+||||||.||+++ ++.+||+|||+|+..
T Consensus 181 ~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 181 LIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV 242 (282)
T ss_dssp CCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred ecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEEECCCCeEC
Confidence 999999988 432 123469999999999999 67899999999999999 999999999999854
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=116.29 Aligned_cols=105 Identities=28% Similarity=0.289 Sum_probs=72.4
Q ss_pred CEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCC
Q 041082 277 TAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSN 356 (639)
Q Consensus 277 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 356 (639)
+.+++++|.++ .+|..+. ++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 4454443 56777777777777766777777777777777777777666666677777777777777
Q ss_pred cCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 357 KLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 357 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
++.++.+..|..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7777666667777777777777777654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=120.28 Aligned_cols=307 Identities=13% Similarity=0.020 Sum_probs=142.0
Q ss_pred CcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCC
Q 041082 69 PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS 148 (639)
Q Consensus 69 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 148 (639)
..+|.++++|+.+.|..+ ++..-..+|.++++|+.+++..+ +...-...|.++.+|+.+.+..+ +.......|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 345666666776666533 44344455666666666666543 33333445666666666555433 2223333344433
Q ss_pred CCCEEecCCCCCCC----CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCC
Q 041082 149 SLSDLDLSHNNLTD----VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224 (639)
Q Consensus 149 ~L~~L~Ls~N~l~~----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (639)
.+..........-+ ....+|+.+.+..+. .......|.++.+|+.+.+..| +..+...+|.++..|+.+.+..+
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 22222111111000 013445555554332 2233344555566666666544 33344445556666665555443
Q ss_pred CCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEE
Q 041082 225 YLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLS 304 (639)
Q Consensus 225 ~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 304 (639)
..... .. . .....++.+.+... +...-...+..+..++.+.+..+... .....|..+..++.+.
T Consensus 219 ~~~i~-~~---~----------~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 219 LYYLG-DF---A----------LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVI 282 (394)
T ss_dssp CCEEC-TT---T----------TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEE
T ss_pred ceEee-hh---h----------cccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceec
Confidence 22100 00 0 00112333333211 11111223445555666655554322 2334445555555555
Q ss_pred ccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCC
Q 041082 305 FVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 305 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 384 (639)
...+.+ ...+|..+.+|+.+.+..+ ++.+...+|.++++|+.+++.. .++.+....|.++.+|+.+.+..| +..
T Consensus 283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 544332 1234555566666665443 4434455566666666666643 244444555666666666666544 333
Q ss_pred CCcccccccccccccccc
Q 041082 385 PLPLEIGNLKVLVGIDLS 402 (639)
Q Consensus 385 ~~p~~~~~l~~L~~l~ls 402 (639)
.-..+|.++.+|+.+++.
T Consensus 357 I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELP 374 (394)
T ss_dssp ECTTTBTTCTTCCEEEEE
T ss_pred ehHHHhhCCCCCCEEEEC
Confidence 334455555555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-10 Score=117.59 Aligned_cols=317 Identities=15% Similarity=0.066 Sum_probs=203.5
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.+.|+. +++..-..+|.++++|+.++|..+ ++..-...|.++.+|+.+.+..+ +.......|.+...++....
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 3689999985 476555678999999999999765 55455677889999998887654 44444555666654443333
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCC--C---CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLT--D---VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI 206 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 206 (639)
... ...-..+|.++++|+.+.+..+..+ . ...++|+.+.+..| +.......|.++..|+.+.+..+... +
T Consensus 148 ~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred ccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--e
Confidence 222 2233456777888888887654321 1 12456777777655 44444566777778887777665432 1
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCC
Q 041082 207 PNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286 (639)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 286 (639)
.+.+.....|+.+.+..+. +..... ...+ ...++.+.+..+.. ......+..+..++.+....+.+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~~i~~~-----~f~~-------~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-TELGKS-----VFYG-------CTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-CEECSS-----TTTT-------CSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred ehhhcccCCCceEEECCCc-eecccc-----cccc-------cccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 2233345677777765331 111110 0111 12444555543322 22234566777788777766543
Q ss_pred CccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhh
Q 041082 287 NGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTL 366 (639)
Q Consensus 287 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 366 (639)
. ...|..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++.+-..+|.++++|+.+.+..| ++.+....|
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred c---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2 345777888998888654 55555678999999999999754 66667789999999999999776 777778889
Q ss_pred hcCCCCcEEEcccCCCCCCCcccccccccccc
Q 041082 367 WNLKDILYLNLSSNFFISPLPLEIGNLKVLVG 398 (639)
Q Consensus 367 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 398 (639)
.++.+|+.+++..+- ..+...+.+..+|+.
T Consensus 363 ~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 363 QGCINLKKVELPKRL--EQYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred hCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence 999999999987652 223455666666654
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-12 Score=123.08 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=79.0
Q ss_pred CCcCcceEEEe-cCCce--eeeEEechhhhh------------------------hhhhHHHHHHHHH------------
Q 041082 407 SGFGSIYKARI-QDGMK--VAVKVFDLQYER------------------------AFKSFDVACDMMK------------ 447 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~--vavK~l~~~~~~------------------------~~~~f~~e~~~~~------------ 447 (639)
.++|.||++.. .+|.. +|||++...... ....+..|...++
T Consensus 58 G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~ 137 (258)
T 1zth_A 58 GKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQP 137 (258)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 45889999987 67888 999986433111 0013444544432
Q ss_pred ------hhhhhcCC-CC----CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 448 ------KLVLEYMP-HG----SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 448 ------~Lv~ey~~-~g----sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.+||||+. +| +|.+.... .++.....++.+++.|++|||. ..+|+||||||.|||++. .++
T Consensus 138 ~~~~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlkp~NILl~~--~~~ 209 (258)
T 1zth_A 138 YTYMKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLSEYNIMYID--KVY 209 (258)
T ss_dssp EEEETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCSTTSEEESS--SEE
T ss_pred EEcCCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCCHHHEEEcC--cEE
Confidence 26889995 25 44333221 2244567899999999999994 346999999999999998 999
Q ss_pred eccccccccc
Q 041082 517 LSDFGMAKLL 526 (639)
Q Consensus 517 i~dfgla~~~ 526 (639)
|+|||+|...
T Consensus 210 liDFG~a~~~ 219 (258)
T 1zth_A 210 FIDMGQAVTL 219 (258)
T ss_dssp ECCCTTCEET
T ss_pred EEECcccccC
Confidence 9999999865
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-13 Score=136.83 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCCCEEeccCCcCCccCCccccCC-----cccceeeccCCcCCCCCCccc-cCCCCCcEEecccccCccccCccc-----
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNM-----SSLLSIYFNNNTLFGEIPEEL-GNLAELETLWLQNNFLTGTIHSSI----- 144 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~----- 144 (639)
++|++|+|++|.++......+... ++|+.|+|++|.+.......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345566666666553322222221 455555555555543222222 233455556666665543322222
Q ss_pred cCCCCCCEEecCCCCCC
Q 041082 145 FNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 145 ~~l~~L~~L~Ls~N~l~ 161 (639)
...++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT 168 (372)
T ss_dssp STTCCCCEEECCSSCCH
T ss_pred hcCCccceeeCCCCCCC
Confidence 12344555555555544
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=135.31 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=83.0
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--------hhhhhHHHHHHHHH--------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--------RAFKSFDVACDMMK--------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--------~~~~~f~~e~~~~~--------------------~Lv~ey~~~gs 458 (639)
.++|.||++.. .+..+++|....... ...+.+..|++.++ .+||||+++|+
T Consensus 347 G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggs 425 (540)
T 3en9_A 347 GAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKL 425 (540)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEE
T ss_pred CCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCC
Confidence 45889999954 467788887533211 11234566666643 26899999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
|.+++.. +..|+.++++||+||| ..+|+||||||+||+++. .+||+|||+|+....
T Consensus 426 L~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 426 AKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp HHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 9998864 5689999999999999 667999999999999999 999999999997643
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-11 Score=121.45 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=57.1
Q ss_pred EEeccCC-cCCccCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCC
Q 041082 80 TLDLSFN-WFSGSIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157 (639)
Q Consensus 80 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 157 (639)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..|..|++|++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4677 77777788888875 777777777777777777777777777777777777766666666555
Q ss_pred CCCC
Q 041082 158 NNLT 161 (639)
Q Consensus 158 N~l~ 161 (639)
|.|+
T Consensus 90 N~l~ 93 (347)
T 2ifg_A 90 NALE 93 (347)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 5554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-12 Score=131.74 Aligned_cols=162 Identities=20% Similarity=0.122 Sum_probs=92.2
Q ss_pred cCccEEEeecCccccccchhhcC-----CCCCCEEECCCCCCCccccccc-cCCcCCcEEEccCCcCCCCCchhh-----
Q 041082 250 QSLEVFSMFNCNISGGILEEISN-----LTNLTAIYLAGNKLNGSIPITL-CKLQKLQLLSFVDNKLEGPIPYEF----- 318 (639)
Q Consensus 250 ~~l~~l~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~----- 318 (639)
..++.+++++|.++......+.. .++|+.|+|++|.++......+ ..+++|+.|++++|+++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554332222221 2466677777776653322222 234566777777776654333332
Q ss_pred cCCCCCcEEECCCCcCccc----CCccccCCCCCCEEeCCCCcCcccc----hhhhhcCCCCcEEEcccCCCCCC----C
Q 041082 319 CRLASLYELDLSGNKLSGS----IPTCFGNQTSLRILSLDSNKLISII----PSTLWNLKDILYLNLSSNFFISP----L 386 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~----~ 386 (639)
...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+.... +..+...+.|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345677777777776542 2333455667777777777776432 44455666777777777776542 2
Q ss_pred ccccccccccccccccCCCCCCcCc
Q 041082 387 PLEIGNLKVLVGIDLSMNNFSGFGS 411 (639)
Q Consensus 387 p~~~~~l~~L~~l~ls~N~l~g~g~ 411 (639)
+..+...+.|+.|||++|+|+..|.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 3334455677778888887765443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=106.87 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=163.9
Q ss_pred cCCCCCC-CCCEEeccCCcCCccCCccccCCcccceeeccCCc---CCCCCCccccCCCCCcEEecccccCccccCcccc
Q 041082 70 SELGNLS-SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT---LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF 145 (639)
Q Consensus 70 ~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 145 (639)
.+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-...|.++.+|+.+.+..+ ++.+....|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4666666433 443444556666666666665542 33333445666666666655443 3334444566
Q ss_pred CCCCCCEEecCCCCC--CC---CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEE
Q 041082 146 NLSSLSDLDLSHNNL--TD---VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLN 220 (639)
Q Consensus 146 ~l~~L~~L~Ls~N~l--~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 220 (639)
++.+|+.+.+..+-. .. .....|+.+.+..+ +...-...| ...+|+.+.+..+- ......+|..+..++...
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccceeeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcc-cccccchhhhccccceec
Confidence 666666666643211 11 11345555555433 222222233 33567777765442 233445677777777776
Q ss_pred ccCCCCCCCCCcchhhccccCC-cchh--hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCC
Q 041082 221 LYDNYLTSSTPELSFLYSLSNC-KYLE--QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKL 297 (639)
Q Consensus 221 Ls~N~l~~~~~~~~~~~~l~~l-~~l~--~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 297 (639)
...+......... ....... ..+. .....+..+.+. +.+...-...|..+..|+.+.+..+... .....|..+
T Consensus 212 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 212 SDSESYPAIDNVL--YEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp ECCSSSCBSSSCE--EEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred cccccccccccee--ecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 6554433221100 0000000 0000 000112222221 1112222345666777888877655332 344567777
Q ss_pred cCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEc
Q 041082 298 QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL 377 (639)
Q Consensus 298 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 377 (639)
..|+.+.+. +.+......+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+-...|.++.+|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 788888775 4455455667888888888888654 55556677888888888888543 66666777888888888887
Q ss_pred ccCCCCCCCccccccccccccccccCC
Q 041082 378 SSNFFISPLPLEIGNLKVLVGIDLSMN 404 (639)
Q Consensus 378 s~N~l~~~~p~~~~~l~~L~~l~ls~N 404 (639)
.+|... -..+.....|+.+.+..|
T Consensus 365 ~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 365 SGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SSCHHH---HHTCBCCCCC--------
T ss_pred CCceee---hhhhhccCCCCEEEeCCC
Confidence 776421 123444455555555444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-08 Score=101.34 Aligned_cols=291 Identities=12% Similarity=0.128 Sum_probs=188.8
Q ss_pred CCccccCCc-ccceeeccCCcCCCCCCccccCCCCCcEEeccccc---CccccCccccCCCCCCEEecCCCCCCC-----
Q 041082 92 IPSSIFNMS-SLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF---LTGTIHSSIFNLSSLSDLDLSHNNLTD----- 162 (639)
Q Consensus 92 ~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~----- 162 (639)
-..+|.+.. .|+.+.+..+ ++..-...|.++.+|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++.
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345677774 5999999754 666667789999999999998874 66555678889999998887654 222
Q ss_pred -CCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccC
Q 041082 163 -VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSN 241 (639)
Q Consensus 163 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 241 (639)
....+|+.+.+..+ +.......|..+.+|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. ... ....+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~-----~af~~ 203 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGT-----NAFSE 203 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECT-----TTTTT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-ccc-----chhhh
Confidence 12567788877643 33344556777888888888654 44444555654 56777777544221 100 01111
Q ss_pred CcchhhhccCccEEEeecCccc-------------cccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCC
Q 041082 242 CKYLEQSSQSLEVFSMFNCNIS-------------GGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDN 308 (639)
Q Consensus 242 l~~l~~~~~~l~~l~l~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 308 (639)
|. .+........... ......+.....+..+.+.. .++..-...|..+..|+.+.+..+
T Consensus 204 c~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 204 CF-------ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CT-------TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred cc-------ccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 21 1222211111110 00000111222344444332 223233456788899999988755
Q ss_pred cCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcc
Q 041082 309 KLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPL 388 (639)
Q Consensus 309 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 388 (639)
.. ..-..+|.+++.|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++..-..
T Consensus 276 ~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 43 3456788999999999996 4566677789999999999999754 77777788999999999999755 5555567
Q ss_pred ccccccccccccccCCC
Q 041082 389 EIGNLKVLVGIDLSMNN 405 (639)
Q Consensus 389 ~~~~l~~L~~l~ls~N~ 405 (639)
+|.++.+|+.+++.++.
T Consensus 352 aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp GGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECCce
Confidence 89999999999988764
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-10 Score=115.19 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=95.3
Q ss_pred CcEEEEEeCCCCCcc-c-------CCcCCCCCCCCCEEeccCCcCC---------ccCCccccCCcccceeeccCCcCCC
Q 041082 52 YRVTTLNISGLSLTS-T-------IPSELGNLSSLQTLDLSFNWFS---------GSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~-~-------~p~~l~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
.+|+.|.+....+.| . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467777777555442 1 1223456778888888654321 123333445566666666655211
Q ss_pred CCCccccCCCCCcEEecccccCccccCcccc--CCCCCCEEecCCCCCCCCCCCCccEEEccCCccCcc-----CCccc-
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIF--NLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGA-----IPHFI- 186 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~-----~p~~~- 186 (639)
.+|. +. +++|+.|+|..|.+....-..+. .+++|++|+|+.+ .|...+. +...+
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~----------------~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG----------------VEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECB----------------CGGGTCCSCGGGTGGGSC
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecc----------------ccccccchhHHHHHHHHh
Confidence 1222 22 55666666665555432222222 4555555555321 0111000 00111
Q ss_pred -cCCCCCcEEEcccCCCcccCcccc---CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCcc
Q 041082 187 -FNASKLSILELQKNSFFDLIPNTF---GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262 (639)
Q Consensus 187 -~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l 262 (639)
..+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.++..... .....+ ....+|+.|+++.|.+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~-~L~~~L-------~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR-LLLDHV-------DKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH-HHHTTH-------HHHTTCSEEECCSBBC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH-HHHhhc-------ccCCcceEEECCCCcC
Confidence 134566666666666543222212 2356677777766665532100 000000 1123566677777766
Q ss_pred ccccchhhcC-CCCCCEEECCCCC
Q 041082 263 SGGILEEISN-LTNLTAIYLAGNK 285 (639)
Q Consensus 263 ~~~~~~~~~~-l~~L~~L~Ls~N~ 285 (639)
+......+.. + ...++++.+.
T Consensus 320 ~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHC--CSEEECCSBC
T ss_pred CHHHHHHHHHHc--CCEEEecCCc
Confidence 6544333332 2 2446666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-11 Score=118.38 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCcCccceecCCCCCcEEEEEeCCC---CCcccCC-cCCCCCCCCCEEeccCCcCCccCCc-cccCCcccce--eeccCC
Q 041082 38 TVCHWTGVSCDVRSYRVTTLNISGL---SLTSTIP-SELGNLSSLQTLDLSFNWFSGSIPS-SIFNMSSLLS--IYFNNN 110 (639)
Q Consensus 38 ~~c~w~gv~c~~~~~~v~~L~L~~~---~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~--L~L~~N 110 (639)
..|.|.|+.|+..+.+|..+...+. .+.+.++ ..+..++. .|...+|..++.++- .|...+.|.. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 4788999999976667766655542 2223332 11211111 222233333332221 2445555655 666777
Q ss_pred cC---CCCCCccccCCCCCcEEecccccCcc--ccCccccCCCCCCEEecCCCCCCCC
Q 041082 111 TL---FGEIPEELGNLAELETLWLQNNFLTG--TIHSSIFNLSSLSDLDLSHNNLTDV 163 (639)
Q Consensus 111 ~l---~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ 163 (639)
.. .+.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.|+++
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 42 22222223467888888888888887 4456667788888888888877764
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=105.03 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhh------------h--hhhH--------HHHHHHHH-----------------
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYER------------A--FKSF--------DVACDMMK----------------- 447 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~------------~--~~~f--------~~e~~~~~----------------- 447 (639)
.+++.||++.-++|..+|||++...... . .... ..|...+.
T Consensus 106 Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~p~~~~~ 185 (397)
T 4gyi_A 106 GKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSR 185 (397)
T ss_dssp CSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCEEEEET
T ss_pred CCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeeccC
Confidence 4588999999889999999987543110 0 0000 11121111
Q ss_pred -hhhhhcCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----------cee
Q 041082 448 -KLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----------VAH 516 (639)
Q Consensus 448 -~Lv~ey~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----------~~~ 516 (639)
.+||||++++.+..+.... + ..+++.+++.++.||| ..+||||||||.|||+++++ .+.
T Consensus 186 ~~LVME~i~G~~L~~l~~~~----~---~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~ 255 (397)
T 4gyi_A 186 HTIVMSLVDALPMRQVSSVP----D---PASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKDAEDPSSITLTPI 255 (397)
T ss_dssp TEEEEECCSCEEGGGCCCCS----C---HHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEECSSCTTSEEEEEE
T ss_pred ceEEEEecCCccHhhhcccH----H---HHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCCcccccccccceE
Confidence 2789999988887654321 1 2457889999999999 55799999999999998776 388
Q ss_pred ecccccccc
Q 041082 517 LSDFGMAKL 525 (639)
Q Consensus 517 i~dfgla~~ 525 (639)
|.||+-+..
T Consensus 256 iID~~Q~V~ 264 (397)
T 4gyi_A 256 IIXFPQMVS 264 (397)
T ss_dssp ECCCTTCEE
T ss_pred EEEeCCccc
Confidence 999987654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-08 Score=102.26 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=27.6
Q ss_pred CccEEEeecCccccccchhh---cCCCCCCEEECCCCCCCcc----ccccccCCcCCcEEEccCCcCC
Q 041082 251 SLEVFSMFNCNISGGILEEI---SNLTNLTAIYLAGNKLNGS----IPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 251 ~l~~l~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+|+.|.+.+|.+.+.....+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44455555444443222222 2345566666666655432 1222233455555555555444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-06 Score=86.36 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=61.4
Q ss_pred cCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCE
Q 041082 271 SNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRI 350 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 350 (639)
....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +......+|.++++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 33444555544433 22222334445555555555433 33333345555555555555432 33334445555555555
Q ss_pred EeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCcccccccccccccccc
Q 041082 351 LSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402 (639)
Q Consensus 351 L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls 402 (639)
+.+.++.++.+....|.++.+|+.+.+..+ +...-..+|.++.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555555555555555555555555433 222223445555555555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=83.13 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=80.5
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
..+..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++.+...+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 44566777888777655 44444566777788888887543 44445567888888888888888887777788888888
Q ss_pred CCEEeCCCCcCcccchhhhhcCCCCcEEEcccC
Q 041082 348 LRILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380 (639)
Q Consensus 348 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 380 (639)
|+.+.+..+ ++.+-...|.++.+|+.+.+..+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888888644 66666778888888888877544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-08 Score=90.67 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCCCCCCCCEEeccCC-cCCcc----CCccccCCcccceeeccCCcCCCC----CCccccCCCCCcEEecccccCccc--
Q 041082 71 ELGNLSSLQTLDLSFN-WFSGS----IPSSIFNMSSLLSIYFNNNTLFGE----IPEELGNLAELETLWLQNNFLTGT-- 139 (639)
Q Consensus 71 ~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-- 139 (639)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4455666777777776 66431 233344455666666666665432 223333445666666666666532
Q ss_pred --cCccccCCCCCCEEec--CCCCCCC
Q 041082 140 --IHSSIFNLSSLSDLDL--SHNNLTD 162 (639)
Q Consensus 140 --~p~~~~~l~~L~~L~L--s~N~l~~ 162 (639)
+...+...++|++|+| ++|.|+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 2334445555666666 5555543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-07 Score=89.71 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCcccceeeccCCcCCC--CCCccccCCCCCcEEecccccCccccCccccCCC--CCCEEecCCCCCC
Q 041082 98 NMSSLLSIYFNNNTLFG--EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLS--SLSDLDLSHNNLT 161 (639)
Q Consensus 98 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~ 161 (639)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 34445555555555544 2334444455555555555555433 1122222 4555555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=81.38 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=60.6
Q ss_pred hhhcCCCCCCEEECCCC-CCCcc----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCccc-
Q 041082 268 EEISNLTNLTAIYLAGN-KLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGS- 337 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 337 (639)
..+...+.|+.|+|++| .+... +...+...+.|++|+|++|++... +...+...++|+.|+|++|.++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777777 66532 223344456666677766666432 222334445666666666666532
Q ss_pred ---CCccccCCCCCCEEeC--CCCcCcccc----hhhhhcCCCCcEEEcccCCC
Q 041082 338 ---IPTCFGNQTSLRILSL--DSNKLISII----PSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 338 ---~p~~~~~l~~L~~L~l--~~N~l~~~~----p~~~~~l~~L~~L~ls~N~l 382 (639)
+...+...++|++|++ ++|.+.... ...+...+.|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444556666666 556655432 22233344555555555543
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=4.8e-05 Score=74.35 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=74.3
Q ss_pred CcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh---------------------hhhhcCCCCCchhccccCCc
Q 041082 410 GSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK---------------------LVLEYMPHGSLEKCLYSSNY 468 (639)
Q Consensus 410 g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~~l~~~~~ 468 (639)
..||+.... +..+++|............+..|...++. +||||+++.++.+.+..
T Consensus 28 ~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~--- 103 (263)
T 3tm0_A 28 AKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED--- 103 (263)
T ss_dssp SEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT---
T ss_pred CeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccCC---
Confidence 447777644 67899998865332223456666655432 56788887777654311
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhcc--------------------------------------------------------
Q 041082 469 ILDIFQRLNIMIDVALALEYLHFG-------------------------------------------------------- 492 (639)
Q Consensus 469 ~l~~~~~~~i~~~ia~~l~~lh~~-------------------------------------------------------- 492 (639)
......++.+++++++.||..
T Consensus 104 ---~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 180 (263)
T 3tm0_A 104 ---EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPE 180 (263)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCC
T ss_pred ---cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCC
Confidence 122346888899999999961
Q ss_pred CCCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 493 YSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 493 ~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
..+.++|+|+++.||+++++..+.|.||+.+..
T Consensus 181 ~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 181 EELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp CCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred CCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 114589999999999998776677999988753
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=97.56 E-value=9.3e-05 Score=72.02 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=69.5
Q ss_pred CcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH----------------------hhhhhcCCCCCchhccccCC
Q 041082 410 GSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK----------------------KLVLEYMPHGSLEKCLYSSN 467 (639)
Q Consensus 410 g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~~l~~~~ 467 (639)
+.+|+....+|..+++|..... ....+..|...++ .+||||+++.++. ...
T Consensus 34 ~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~-- 106 (264)
T 1nd4_A 34 AAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH-- 106 (264)
T ss_dssp CEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TSC--
T ss_pred ceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cCc--
Confidence 5688887777778899986533 1234445554432 2566777766663 111
Q ss_pred ccCCHHHHHHHHHHHHHhhhhhhccC------------------------------------------------------
Q 041082 468 YILDIFQRLNIMIDVALALEYLHFGY------------------------------------------------------ 493 (639)
Q Consensus 468 ~~l~~~~~~~i~~~ia~~l~~lh~~~------------------------------------------------------ 493 (639)
.+ +..++.++++.++.||...
T Consensus 107 --~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (264)
T 1nd4_A 107 --LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDG 181 (264)
T ss_dssp --CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSS
T ss_pred --CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCC
Confidence 11 2356777888888888421
Q ss_pred -CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 -STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 -~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+++.||+++++..+.|.|||.+..
T Consensus 182 ~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 182 EDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp CCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998887778999998764
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.43 E-value=5e-05 Score=68.58 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=33.2
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCc-CCCCCCccccCC----CCCcEEeccccc-CccccCccccCCCCC
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT-LFGEIPEELGNL----AELETLWLQNNF-LTGTIHSSIFNLSSL 150 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L 150 (639)
.|+.|||+++.++..--..+..+++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..-=..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444432222233344444444444442 222111223332 245555555543 432211234445555
Q ss_pred CEEecCCC
Q 041082 151 SDLDLSHN 158 (639)
Q Consensus 151 ~~L~Ls~N 158 (639)
++|+|++.
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=66.36 Aligned_cols=85 Identities=12% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCc-CCccCCccccCC----cccceeeccCCc-CCCCCCccccCCC
Q 041082 51 SYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNW-FSGSIPSSIFNM----SSLLSIYFNNNT-LFGEIPEELGNLA 124 (639)
Q Consensus 51 ~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~ 124 (639)
..+++.||++++.++..--..+.++++|++|+|++|. ++..-=..+..+ ++|++|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3689999999999875433457899999999999995 654322345554 479999999985 6654445678899
Q ss_pred CCcEEeccccc
Q 041082 125 ELETLWLQNNF 135 (639)
Q Consensus 125 ~L~~L~L~~N~ 135 (639)
+|+.|+|+++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999986
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=68.22 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=73.6
Q ss_pred cCcceEEEecCCceeeeEEec--hhh-hhhhhhHHHHHHHHHh-------------------------hhhhcCCCCCch
Q 041082 409 FGSIYKARIQDGMKVAVKVFD--LQY-ERAFKSFDVACDMMKK-------------------------LVLEYMPHGSLE 460 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~--~~~-~~~~~~f~~e~~~~~~-------------------------Lv~ey~~~gsL~ 460 (639)
...+|+....+ ..+.+|+.. ... ......+..|...++. +||||+++..+.
T Consensus 51 sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~ 129 (359)
T 3dxp_A 51 SNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLW 129 (359)
T ss_dssp CSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCC
T ss_pred cceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecC
Confidence 34577776654 466677654 221 1112345555555332 467777776654
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----------------------------------------------
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY----------------------------------------------- 493 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~----------------------------------------------- 493 (639)
+.. ...++..++..++.++++.|+.||..-
T Consensus 130 ~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (359)
T 3dxp_A 130 DQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQ 206 (359)
T ss_dssp CTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGG
T ss_pred CCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHh
Confidence 311 123678888999999999999999520
Q ss_pred --------CCCeEeecCCCCceeecCCcc--eeecccccccc
Q 041082 494 --------STPIIHCDLKLSNVLLGNNMV--AHLSDFGMAKL 525 (639)
Q Consensus 494 --------~~~i~h~dlk~~nill~~~~~--~~i~dfgla~~ 525 (639)
.+.++|||+++.||+++.+.. +.|.||+.+..
T Consensus 207 ~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 207 HIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred cCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997653 58999998864
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0031 Score=54.04 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred EEEeCCCCCc-ccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCC
Q 041082 56 TLNISGLSLT-STIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNN 110 (639)
Q Consensus 56 ~L~L~~~~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 110 (639)
.++.++++++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3455555654 23454333 24566666666665433333444444444444444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0038 Score=53.45 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=20.3
Q ss_pred CCcEEecccccCccccCccccCCCCCCEEecCCCCC
Q 041082 125 ELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNL 160 (639)
Q Consensus 125 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 160 (639)
+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455666666666555445555555555555555544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=58.31 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=6.9
Q ss_pred CCCCCCEEEccCC
Q 041082 212 NLINLKRLNLYDN 224 (639)
Q Consensus 212 ~l~~L~~L~Ls~N 224 (639)
.-+.|+.|+++.|
T Consensus 155 ~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 155 ENESLLRVGISFA 167 (197)
T ss_dssp HCSSCCEEECCCC
T ss_pred hCCCcCeEeccCC
Confidence 3455566666544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.009 Score=54.83 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=31.3
Q ss_pred cCCCCCCEEECCCC-CCCcc----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCc
Q 041082 271 SNLTNLTAIYLAGN-KLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLS 335 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 335 (639)
.+-+.|+.|+|++| .|... +...+..-..|+.|+|++|++... +...+..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666664 54321 122333344555666666555421 2223333345555565555554
|
| >3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0051 Score=61.27 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=27.3
Q ss_pred CCCeEeecCCCCceeecC--Ccceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~ 525 (639)
.+.++|+|+++.||++++ ...+.|.||+.+..
T Consensus 190 ~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~ 223 (304)
T 3sg8_A 190 YPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI 223 (304)
T ss_dssp CCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred CceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence 457899999999999998 56678999998764
|
| >3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.076 Score=52.68 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=26.8
Q ss_pred CCCCeEeecCCCCceeecC---Ccc-eeecccccccc
Q 041082 493 YSTPIIHCDLKLSNVLLGN---NMV-AHLSDFGMAKL 525 (639)
Q Consensus 493 ~~~~i~h~dlk~~nill~~---~~~-~~i~dfgla~~ 525 (639)
..+.++|+|+++.||+++. ++. ..|.||+.+..
T Consensus 188 ~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 188 YTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp CCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred CCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 3567899999999999987 344 47999998764
|
| >3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.16 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCeEeecCCCCceeecCCcceeecccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
.+.++|+|+.+.||+++++..+.|.||+.+..
T Consensus 221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~ 252 (357)
T 3ats_A 221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL 252 (357)
T ss_dssp CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence 46789999999999999655578999988764
|
| >2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.29 Score=48.93 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=28.1
Q ss_pred CCCeEeecCCCCceeecCCcceeeccccccc
Q 041082 494 STPIIHCDLKLSNVLLGNNMVAHLSDFGMAK 524 (639)
Q Consensus 494 ~~~i~h~dlk~~nill~~~~~~~i~dfgla~ 524 (639)
.+.++|||+++.||+++.+..+.|.||+.+.
T Consensus 221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 5789999999999999888889999998775
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=83.96 E-value=2.3 Score=41.22 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.3
Q ss_pred cCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH
Q 041082 409 FGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK 447 (639)
Q Consensus 409 ~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~ 447 (639)
...+|+.++.+|..+.+|+-..........|..|...++
T Consensus 28 ~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~ 66 (288)
T 3f7w_A 28 RWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLD 66 (288)
T ss_dssp TEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHH
T ss_pred CeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHH
Confidence 456899999999999999865433333345666766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 639 | ||||
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 8e-29 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 2e-28 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 1e-27 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 2e-26 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 2e-26 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 7e-26 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 1e-25 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 2e-25 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 2e-25 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 3e-25 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 6e-25 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 6e-25 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 4e-24 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 7e-24 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 9e-24 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 9e-24 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 1e-23 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 2e-23 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 5e-23 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 6e-23 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 8e-23 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 1e-22 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 4e-22 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 7e-22 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 1e-21 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 1e-21 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-21 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-05 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 3e-21 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 5e-21 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 5e-21 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 1e-20 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 3e-20 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 4e-20 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 6e-20 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 2e-19 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 7e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-18 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 2e-18 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-18 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-08 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 1e-17 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 4e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-13 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 1e-16 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 2e-16 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 5e-16 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 5e-16 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 1e-15 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 2e-15 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 8e-15 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 2e-14 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 2e-14 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 6e-14 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 6e-14 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 7e-14 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 1e-13 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 2e-13 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 3e-13 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 4e-13 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 4e-13 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 6e-13 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 3e-12 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 1e-11 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 1e-11 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 4e-10 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 3e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-08 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 2e-07 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 1e-06 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 6e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 8e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 5e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.003 |
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (285), Expect = 8e-29
Identities = 48/249 (19%), Positives = 85/249 (34%), Gaps = 40/249 (16%)
Query: 408 GFGSIYKARIQDGMKVAVKVF--DLQYERAFKS----------------FDVACDMMKKL 449
FG ++ KVAVK AF + + V +
Sbjct: 25 QFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYI 84
Query: 450 VLEYMPHGSLEKCLYSSNYI-LDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+ EYM +GSL L + + I L I + L++ +A + ++ IH DL+ +N+L
Sbjct: 85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANIL 141
Query: 509 LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSWVND 568
+ + + ++DFG+A+L+ + + + G T+KS V
Sbjct: 142 VSDTLSCKIADFGLARLIEDNE------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWS 195
Query: 569 L------------LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRI 616
+P M +V C ++ L C E P+ R
Sbjct: 196 FGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRP 255
Query: 617 NAKESVTRL 625
+ L
Sbjct: 256 TFDYLRSVL 264
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (282), Expect = 2e-28
Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 44/259 (16%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL---------------- 449
FG++YK + VAVK+ ++ + ++F +++K
Sbjct: 20 SFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQ 77
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
V ++ SL L+ ++ + ++I A ++YLH IIH DLK +N
Sbjct: 78 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNN 134
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKS-- 564
+ L ++ + DFG+A + S + I + +S
Sbjct: 135 IFLHEDLTVKIGDFGLATVK--SRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDV 192
Query: 565 W---------VNDLLPISVMEVVDVNLLSMEDKYF-----TTKKQCLSFVFNLAMECTAE 610
+ + LP S + D + + Y + C + L EC +
Sbjct: 193 YAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKK 252
Query: 611 SPKQRINAKESVTRLLKIR 629
+R + + + +
Sbjct: 253 KRDERPLFPQILASIELLA 271
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 1e-27
Identities = 51/260 (19%), Positives = 93/260 (35%), Gaps = 34/260 (13%)
Query: 408 GFGSIYKARIQ---DGMKVAVKVFDLQYERAF-KSFDVACDMMKKL-------------- 449
FGS+ + + + VA+KV E+A + +M +L
Sbjct: 21 NFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA 80
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
V+E G L K L + + ++ V++ ++YL +H DL
Sbjct: 81 EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAA 137
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC-------HHRIYGTRRNPQMNFFS 557
NVLL N A +SDFG++K L +D +T + I + + + + +S
Sbjct: 138 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWS 197
Query: 558 -GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRI 616
G ++ P M+ +V + K +C ++ L +C + R
Sbjct: 198 YGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRP 257
Query: 617 NAKESVTRLLKIRDLLLKNV 636
+ R+ L V
Sbjct: 258 DFLTVEQRMRACYYSLASKV 277
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 2e-26
Identities = 42/248 (16%), Positives = 83/248 (33%), Gaps = 41/248 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
FG +YKA+ + + A KV D + E + + V D++
Sbjct: 24 AFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENN 83
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
++E+ G+++ + L Q + AL YLH IIH DLK N
Sbjct: 84 LWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGN 140
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY------------GTRRNPQMN 554
+L + L+DFG++ ++ + + + + + +
Sbjct: 141 ILFTLDGDIKLADFGVSAKN---TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKAD 197
Query: 555 FFSGEMTLKSWVNDLLPISVMEVVDV--NLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612
+S +TL P + + V + E + S + +C ++
Sbjct: 198 VWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNV 257
Query: 613 KQRINAKE 620
R +
Sbjct: 258 DARWTTSQ 265
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 2e-26
Identities = 56/264 (21%), Positives = 90/264 (34%), Gaps = 38/264 (14%)
Query: 398 GIDLSMNNFS--------GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL 449
G L+M FG + G KVAVK ++F +M +L
Sbjct: 1 GWALNMKELKLLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATA--QAFLAEASVMTQL 57
Query: 450 ---------------------VLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVALALE 487
V EYM GSL L S +L L +DV A+E
Sbjct: 58 RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAME 117
Query: 488 YLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTN-TCHHRIYG 546
YL +H DL NVL+ + VA +SDFG+ K + T +
Sbjct: 118 YLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE 174
Query: 547 TRRNPQMNFFS-GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAM 605
+ + + + +S G + + + +P + + DV + C V+ +
Sbjct: 175 KKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMK 234
Query: 606 ECTAESPKQRINAKESVTRLLKIR 629
C R + + +L I+
Sbjct: 235 NCWHLDAAMRPSFLQLREQLEHIK 258
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 105 bits (264), Expect = 7e-26
Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 38/256 (14%)
Query: 408 GFGSIYKARI----QDGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------- 449
FG + + + + VA+K Y E+ + F +M +
Sbjct: 38 EFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVT 97
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+ E+M +GSL+ L ++ + Q + ++ +A ++YL +H DL
Sbjct: 98 KSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDL 154
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH---------HRIYGTRRNPQM 553
N+L+ +N+V +SDFG+++ L + T + I +
Sbjct: 155 AARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS 214
Query: 554 NFFSGEMTLKSWVND-LLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612
+ +S + + ++ P M DV +D C S + L ++C +
Sbjct: 215 DVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDR 274
Query: 613 KQRINAKESVTRLLKI 628
R + V L K+
Sbjct: 275 NHRPKFGQIVNTLDKM 290
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 1e-25
Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 30/244 (12%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG ++ +VA+K + ++F +MKKL
Sbjct: 29 CFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIY 87
Query: 450 -VLEYMPHGSLEKCLYSSNYILDIF-QRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
V EYM GSL L Q +++ +A + Y+ +H DL+ +N+
Sbjct: 88 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANI 144
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH-----HRIYGTRRNPQMNFFS-GEMT 561
L+G N+V ++DFG+A+L+ + + Q R + + +S G +
Sbjct: 145 LVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILL 204
Query: 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKES 621
+ +P M +V +C + +L +C + P++R +
Sbjct: 205 TELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL 264
Query: 622 VTRL 625
L
Sbjct: 265 QAFL 268
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (258), Expect = 2e-25
Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 30/247 (12%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG + + + VA+K+ + F +M L
Sbjct: 16 QFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPI 74
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
+ EYM +G L L + Q L + DV A+EYL +H DL N
Sbjct: 75 FIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNC 131
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT-----CHHRIYGTRRNPQMNFFS-GEMT 561
L+ + V +SDFG+++ +L ++ + + + + ++ + + + ++ G +
Sbjct: 132 LVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLM 191
Query: 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKES 621
+ + +P + + V+ + C E +R K
Sbjct: 192 WEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKIL 251
Query: 622 VTRLLKI 628
++ +L +
Sbjct: 252 LSNILDV 258
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 104 bits (260), Expect = 2e-25
Identities = 52/278 (18%), Positives = 94/278 (33%), Gaps = 60/278 (21%)
Query: 408 GFGSIYKAR------IQDGMKVAVKVFDLQY-ERAFKSFDVACDMMKK------------ 448
FG +++AR + VAVK+ + F +M +
Sbjct: 25 AFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV 84
Query: 449 --------LVLEYMPHGSLEKCLYSSNY-----------------------ILDIFQRLN 477
L+ EYM +G L + L S + L ++L
Sbjct: 85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLC 144
Query: 478 IMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
I VA + YL +H DL N L+G NMV ++DFG+++ + D
Sbjct: 145 IARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGN 201
Query: 538 N------TCHHRIYGTRRNPQMNFFS-GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590
+ I+ R + + ++ G + + + L P M +V +
Sbjct: 202 DAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNIL 261
Query: 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
+ C ++NL C ++ P R + L ++
Sbjct: 262 ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 3e-25
Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 30/249 (12%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG ++ + KVA+K + F ++M KL
Sbjct: 17 QFGLVHLGYWLNKDKVAIKTIREGAMSE-EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI 75
Query: 450 --VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNV 507
V E+M HG L L + + L + +DV + YL +IH DL N
Sbjct: 76 CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNC 132
Query: 508 LLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT-----CHHRIYGTRRNPQMNFFS-GEMT 561
L+G N V +SDFGM + +L + + + T +R + + + +S G +
Sbjct: 133 LVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLM 192
Query: 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKES 621
+ + +P +V + + V+ + C E P+ R
Sbjct: 193 WEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRL 252
Query: 622 VTRLLKIRD 630
+ +L +I +
Sbjct: 253 LRQLAEIAE 261
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (256), Expect = 6e-25
Identities = 44/247 (17%), Positives = 80/247 (32%), Gaps = 34/247 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL--------------- 449
+G K R DG + K D E + +++++L
Sbjct: 16 SYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR 75
Query: 450 -------VLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVALALEYLH--FGYSTPI 497
V+EY G L + LD L +M + LAL+ H +
Sbjct: 76 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTV 135
Query: 498 IHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR----IYGTRRNPQM 553
+H DLK +NV L L DFG+A++L + T ++ + N +
Sbjct: 136 LHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKS 195
Query: 554 NFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPK 613
+ +S L + P + ++ E K+ + + +
Sbjct: 196 DIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDY 255
Query: 614 QRINAKE 620
R + +E
Sbjct: 256 HRPSVEE 262
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 6e-25
Identities = 48/287 (16%), Positives = 85/287 (29%), Gaps = 68/287 (23%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL------------------ 449
FG +++ + G +VAVK+F + ER++ + L
Sbjct: 15 RFGEVWRGK-WRGEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNKDNGT 72
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLH-----FGYSTPII 498
V +Y HGSL L + Y + + + + + A L +LH I
Sbjct: 73 WTQLWLVSDYHEHGSLFDYL--NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIA 130
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT-CHHRIYG----------- 546
H DLK N+L+ N ++D G+A + N + Y
Sbjct: 131 HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINM 190
Query: 547 ----------------------TRRNPQMNFFSGEMTLKSWVNDLLPISVM-EVVDVNLL 583
R + ++ V + M +VV L
Sbjct: 191 KHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL 250
Query: 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630
+ L + + EC + R+ A L ++
Sbjct: 251 RPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (252), Expect = 4e-24
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 32/241 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL---QYERAFKSFDVACDMMKKL-------------- 449
FG++Y AR +++ VA+K Q ++ ++KL
Sbjct: 27 SFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR 86
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+EY + + L + + L YLH S +IH D+K
Sbjct: 87 EHTAWLVMEYCLGSASDLLEVHKKP-LQEVEIAAVTHGALQGLAYLH---SHNMIHRDVK 142
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQ---SFTQNTNTCHHRIYGTRRNPQMNFFSGEM 560
N+LL + L DFG A ++ + + + + + +++ +S +
Sbjct: 143 AGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 202
Query: 561 TLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF-NLAMECTAESPKQRINAK 619
T P+ M + +++ + S F N C + P+ R ++
Sbjct: 203 TCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSE 262
Query: 620 E 620
Sbjct: 263 V 263
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.8 bits (248), Expect = 7e-24
Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 36/251 (14%)
Query: 408 GFGSIYKARIQD-GMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
+G +Y+ + + VAVK + F +MK++
Sbjct: 29 QYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP 87
Query: 450 ---VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+ E+M +G+L L N + L + ++ A+EYL IH DL
Sbjct: 88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAAR 144
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFFSGEMTLKSW 565
N L+G N + ++DFG+++L+ ++T + + + N FS + + ++
Sbjct: 145 NCLVGENHLVKVADFGLSRLM--TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 202
Query: 566 VNDLL--------PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRIN 617
L P +++ V L +D + C V+ L C +P R +
Sbjct: 203 GVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPS 262
Query: 618 AKESVTRLLKI 628
E +
Sbjct: 263 FAEIHQAFETM 273
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.4 bits (247), Expect = 9e-24
Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 38/257 (14%)
Query: 408 GFGSIYKARI----QDGMKVAVKVF------DLQYERAFKS----------------FDV 441
FG + + + VAVK + F + V
Sbjct: 20 SFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGV 79
Query: 442 ACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
K+V E P GSL L + + VA + YL S IH D
Sbjct: 80 VLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRD 136
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC-------HHRIYGTRRNPQMN 554
L N+LL + + DFG+ + L + D + + + + +
Sbjct: 137 LAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASD 196
Query: 555 FFSGEMTLKSWVND-LLPISVMEVVDV-NLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612
+ +TL P + + + + E + + C ++N+ ++C A P
Sbjct: 197 TWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKP 256
Query: 613 KQRINAKESVTRLLKIR 629
+ R LL+ +
Sbjct: 257 EDRPTFVALRDFLLEAQ 273
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.1 bits (246), Expect = 9e-24
Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 33/253 (13%)
Query: 408 GFGSIYKARI----QDGMKVAVKVFDLQYERAFKS--------------------FDVAC 443
FG +++ + VA+K + + V
Sbjct: 19 QFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT 78
Query: 444 DMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
+ +++E G L L Y LD+ + ++ AL YL S +H D+
Sbjct: 79 ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIA 135
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT-----CHHRIYGTRRNPQMNFFSG 558
NVL+ +N L DFG+++ + I R + +
Sbjct: 136 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMF 195
Query: 559 EMTL-KSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRIN 617
+ + + ++ + P ++ DV + C +++L +C A P +R
Sbjct: 196 GVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPR 255
Query: 618 AKESVTRLLKIRD 630
E +L I +
Sbjct: 256 FTELKAQLSTILE 268
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.1 bits (246), Expect = 1e-23
Identities = 49/261 (18%), Positives = 103/261 (39%), Gaps = 49/261 (18%)
Query: 408 GFGSIYKARIQDG-----MKVAVKVFDLQY-ERAFKSFDVACDMMKKL------------ 449
FG +YK ++ + VA+K Y E+ F +M +
Sbjct: 19 EFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI 78
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
+ EYM +G+L+K L + + Q + ++ +A ++YL + +H D
Sbjct: 79 SKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRD 135
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC-------HHRIYGTRRNPQMN 554
L N+L+ +N+V +SDFG++++L + ++ + I + +
Sbjct: 136 LAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASD 195
Query: 555 FFSGEMTL-------KSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607
+S + + + +L VM+ ++ + T C S ++ L M+C
Sbjct: 196 VWSFGIVMWEVMTYGERPYWELSNHEVMKAIN------DGFRLPTPMDCPSAIYQLMMQC 249
Query: 608 TAESPKQRINAKESVTRLLKI 628
+ +R + V+ L K+
Sbjct: 250 WQQERARRPKFADIVSILDKL 270
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.3 bits (244), Expect = 2e-23
Identities = 46/250 (18%), Positives = 92/250 (36%), Gaps = 36/250 (14%)
Query: 408 GFGSIYKARIQD---GMKVAVKVFDLQY--ERAFKSFDVACDMMKKL------------- 449
FG++ K Q VAVK+ + ++M++L
Sbjct: 19 NFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE 78
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
V+E G L K L + + + + ++ V++ ++YL + +H DL
Sbjct: 79 AESWMLVMEMAELGPLNKYLQQNRH-VKDKNIIELVHQVSMGMKYLEE---SNFVHRDLA 134
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH-------HRIYGTRRNPQMNFF 556
NVLL A +SDFG++K L ++ + T+ I + + + + +
Sbjct: 135 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW 194
Query: 557 S-GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
S G + +++ P M+ +V + + + C +++L C + R
Sbjct: 195 SFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENR 254
Query: 616 INAKESVTRL 625
RL
Sbjct: 255 PGFAAVELRL 264
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.9 bits (243), Expect = 5e-23
Identities = 48/304 (15%), Positives = 110/304 (36%), Gaps = 50/304 (16%)
Query: 373 LYLNLSSNFFISP-LPLEIGNLKVLVGIDLSMNNFS------GFGSIYKARIQD----GM 421
++++LS+ ++P L + + V++G + +F+ FG +Y + D +
Sbjct: 2 VHIDLSA---LNPELVQAVQH--VVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKI 56
Query: 422 KVAVKVFDLQYERAF-KSFDVACDMMKKL---------------------VLEYMPHGSL 459
AVK + + F +MK VL YM HG L
Sbjct: 57 HCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDL 116
Query: 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSD 519
+ + + + + + VA +++L +H DL N +L ++D
Sbjct: 117 RNFIRNETHNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVAD 173
Query: 520 FGMAKLLLKEDQSFTQNTNT--------CHHRIYGTRRNPQMNFFS-GEMTLKSWVNDLL 570
FG+A+ + ++ N + + + + +S G + +
Sbjct: 174 FGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAP 233
Query: 571 PISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630
P + D+ + ++ + + C ++ + ++C + R + E V+R+ I
Sbjct: 234 PYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 293
Query: 631 LLLK 634
+
Sbjct: 294 TFIG 297
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.9 bits (243), Expect = 6e-23
Identities = 40/282 (14%), Positives = 77/282 (27%), Gaps = 73/282 (25%)
Query: 408 GFGSIYKA------RIQDGMKVAVKVFDLQYERAF-KSFDVACDMMKKL----------- 449
FG + A + ++VAVK+ + + + ++ MM +L
Sbjct: 49 AFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLG 108
Query: 450 ----------VLEYMPHGSLEKCLYSSN----------------------YILDIFQRLN 477
+ EY +G L L S +L L
Sbjct: 109 ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLC 168
Query: 478 IMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT 537
VA +E+L +H DL NVL+ + V + DFG+A+ ++ +
Sbjct: 169 FAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS------N 219
Query: 538 NTCHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVV--------------DVNLL 583
+ + I + E+ + L
Sbjct: 220 YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKL 279
Query: 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRL 625
++ + C A ++R + + L
Sbjct: 280 IQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (242), Expect = 8e-23
Identities = 44/253 (17%), Positives = 85/253 (33%), Gaps = 35/253 (13%)
Query: 408 GFGSIYKARIQD-----GMKVAVKVF-DLQYERAFKSFDVACDMMKKL------------ 449
FG++YK + VA+K + +A K +M +
Sbjct: 21 AFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGIC 80
Query: 450 -------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+ + MP G L + + LN + +A + YL ++H DL
Sbjct: 81 LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDL 137
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT------CHHRIYGTRRNPQMNFF 556
NVL+ ++DFG+AKLL E++ + I Q + +
Sbjct: 138 AARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVW 197
Query: 557 S-GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQR 615
S G + P + +++ + + + C V+ + ++C R
Sbjct: 198 SYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSR 257
Query: 616 INAKESVTRLLKI 628
+E + K+
Sbjct: 258 PKFRELIIEFSKM 270
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (239), Expect = 1e-22
Identities = 45/274 (16%), Positives = 83/274 (30%), Gaps = 56/274 (20%)
Query: 408 GFGSIYKARI------QDGMKVAVKVFDLQYERAF-KSFDVACDMMKKL----------- 449
FG + +A M VAVK+ ++ ++ L
Sbjct: 35 AFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLG 94
Query: 450 ----------VLEYMPHGSLEKCLYSS-----------------NYILDIFQRLNIMIDV 482
+ EY +G L L LD+ L+ V
Sbjct: 95 ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQV 154
Query: 483 ALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT--- 539
A + +L S IH DL N+LL + + + DFG+A+ + + +
Sbjct: 155 AKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPV 211
Query: 540 ---CHHRIYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSM--EDKYFTTKK 594
I+ + + +S + L + VD M E + +
Sbjct: 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE 271
Query: 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
+ ++++ C P +R K+ V + K
Sbjct: 272 HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 95.9 bits (238), Expect = 4e-22
Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 32/242 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
FG +++ G A K +E ++ M L
Sbjct: 38 AFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNE 97
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+ E+M G L + + + + + + M V L ++H +H DLK N
Sbjct: 98 MVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPEN 154
Query: 507 VLLGN--NMVAHLSDFGMAKLLLKEDQSFTQNTN---TCHHRIYGTRRNPQMNFFSGEMT 561
++ + L DFG+ L + G + +S +
Sbjct: 155 IMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVL 214
Query: 562 LKSWVNDLLPISVMEVVDV--NLLSMEDKYFTTKKQCLSFVF-NLAMECTAESPKQRINA 618
++ L P + N+ S + + +S + + P R+
Sbjct: 215 SYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTI 274
Query: 619 KE 620
+
Sbjct: 275 HQ 276
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.5 bits (234), Expect = 7e-22
Identities = 56/282 (19%), Positives = 97/282 (34%), Gaps = 55/282 (19%)
Query: 401 LSMNNFS--------GFGSIYKARIQDG---MKVAVKVFDLQYER-AFKSFDVACDMMKK 448
L N+ FG + KARI+ M A+K + + F +++ K
Sbjct: 7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCK 66
Query: 449 L---------------------VLEYMPHGSLEKCLYSSNYI---------------LDI 472
L +EY PHG+L L S + L
Sbjct: 67 LGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 126
Query: 473 FQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS 532
Q L+ DVA ++YL IH DL N+L+G N VA ++DFG+++ +
Sbjct: 127 QQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK 183
Query: 533 FTQNTNT---CHHRIYGTRRNPQMNFFSGEMTLKSWV-NDLLPISVMEVVDVNLLSMEDK 588
+ + + +S + L V P M ++ +
Sbjct: 184 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGY 243
Query: 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630
C V++L +C E P +R + + + L ++ +
Sbjct: 244 RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.0 bits (233), Expect = 1e-21
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 33/158 (20%)
Query: 399 IDLSMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKS-FDVACDMMKK 448
++L ++F G ++K G+ +A K+ L+ + A ++ ++ +
Sbjct: 1 MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60
Query: 449 L--------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEY 488
+E+M GSL++ L + + + I V L Y
Sbjct: 61 CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTY 119
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526
L I+H D+K SN+L+ + L DFG++ L
Sbjct: 120 LRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 155
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.7 bits (230), Expect = 1e-21
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 39/253 (15%)
Query: 402 SMNNFS--------GFGSIYKAR-IQDGMKVAVKVFD---LQYERAFKSFDVACDMMKKL 449
++ +F FG++Y AR Q +A+KV L+ ++ L
Sbjct: 4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 63
Query: 450 --------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL 489
+LEY P G++ + L + D + + ++A AL Y
Sbjct: 64 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 122
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHH--RIYGT 547
H S +IH D+K N+LLG+ ++DFG + ++ T I G
Sbjct: 123 H---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGR 179
Query: 548 RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607
+ +++ +S + ++ P + + FT +L
Sbjct: 180 MHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET-YKRISRVEFTFPDFVTEGARDLISRL 238
Query: 608 TAESPKQRINAKE 620
+P QR +E
Sbjct: 239 LKHNPSQRPMLRE 251
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 93.7 bits (231), Expect = 2e-21
Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 17/304 (5%)
Query: 23 DDPTNFLAKNWNTSSTVCH--WTGVSCD--VRSYRVTTLNISGLSLTS--TIPSELGNLS 76
+PT +W ++ C+ W GV CD ++YRV L++SGL+L IPS L NL
Sbjct: 19 GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 77 SLQTLDLSFNW-FSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135
L L + G IP +I ++ L +Y + + G IP+ L + L TL N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 136 LTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSIL 195
L+GT+ SI +L +L + N ++ + +FS + ++L+
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRIS-------GAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 196 ELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVF 255
+ +L + ++ ++ SL+ S++L
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 256 SMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIP 315
+ N I G + + ++ L L ++ ++ N L G IP LQ+ + ++ +NK P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
Query: 316 YEFC 319
C
Sbjct: 309 LPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 18/252 (7%)
Query: 161 TDVQIPNLENLLLWGNNFSGA--IPHFIFNASKLSILELQKN-SFFDLIPNTFGNLINLK 217
TD Q + NL L G N IP + N L+ L + + IP L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 218 RLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLT 277
L + ++ ++L +SG + IS+L NL
Sbjct: 105 YLYITHTNVSG------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 278 AIYLAGNKLNGSIPITLCKLQKLQL-LSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
I GN+++G+IP + KL ++ N+L G IP F +
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLE 210
Query: 337 SIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVL 396
+ + ++ + K++ L+L +N LP + LK L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 397 VGIDLSMNNFSG 408
+++S NN G
Sbjct: 271 HSLNVSFNNLCG 282
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.0 bits (228), Expect = 3e-21
Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 37/246 (15%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK---------------- 448
F ++YK + ++VA + + + F +M+K
Sbjct: 21 SFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST 80
Query: 449 --------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
LV E M G+L+ L ++ I + + L++LH + PIIH
Sbjct: 81 VKGKKCIVLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHT-RTPPIIHR 138
Query: 501 DLKLSNVLL-GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR---IYGTRRNPQMNFF 556
DLK N+ + G + D G+A LK T +Y + + ++ +
Sbjct: 139 DLKCDNIFITGPTGSVKIGDLGLAT--LKRASFAKAVIGTPEFMAPEMYEEKYDESVDVY 196
Query: 557 SGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK--KQCLSFVFNLAMECTAESPKQ 614
+ M + P S + + K + V + C ++ +
Sbjct: 197 AFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDE 256
Query: 615 RINAKE 620
R + K+
Sbjct: 257 RYSIKD 262
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (227), Expect = 5e-21
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 32/240 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
G++Y A + G +VA++ +LQ + + +M++
Sbjct: 32 ASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDE 91
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
V+EY+ GSL + + D Q + + ALE+LH S +IH D+K N
Sbjct: 92 LWVVMEYLAGGSLTDVVTETCM--DEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDN 146
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH----HRIYGTRRNPQMNFFSGEMTL 562
+LLG + L+DFG + E + T + + P+++ +S +
Sbjct: 147 ILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206
Query: 563 KSWVNDLLPISVMEVVDV-NLLSMEDKYFTTKKQCLSFVF-NLAMECTAESPKQRINAKE 620
+ P + L++ + LS +F + C ++R +AKE
Sbjct: 207 IEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKE 266
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 92.4 bits (229), Expect = 5e-21
Identities = 32/242 (13%), Positives = 81/242 (33%), Gaps = 32/242 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
FG +++ G K + Y + +M +L
Sbjct: 41 AFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE 100
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+LE++ G L + + +Y + + +N M L+++H I+H D+K N
Sbjct: 101 MVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPEN 157
Query: 507 VLL--GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR---IYGTRRNPQMNFFSGEMT 561
++ + DFG+A L ++ + + ++ +
Sbjct: 158 IMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVL 217
Query: 562 LKSWVNDLLPISVMEVVDV--NLLSMEDKYFTTKKQCLSFVF-NLAMECTAESPKQRINA 618
++ L P + + ++ N+ + ++ +S + + P++R+
Sbjct: 218 GYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTV 277
Query: 619 KE 620
+
Sbjct: 278 HD 279
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.5 bits (224), Expect = 1e-20
Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 35/243 (14%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKKL-------------- 449
F ++ AR + + A+K+ + ++ E D+M +L
Sbjct: 20 SFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD 79
Query: 450 ------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLK 503
L Y +G L K + D ++ ALEYLH IIH DLK
Sbjct: 80 DEKLYFGLSYAKNGELLKYIRKIGS-FDETCTRFYTAEIVSALEYLH---GKGIIHRDLK 135
Query: 504 LSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR------IYGTRRNPQMNFFS 557
N+LL +M ++DFG AK+L E + N+ + + + ++
Sbjct: 136 PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWA 195
Query: 558 GEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRIN 617
+ V L P + ++ +Y ++ +L + +R+
Sbjct: 196 LGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEY-DFPEKFFPKARDLVEKLLVLDATKRLG 254
Query: 618 AKE 620
+E
Sbjct: 255 CEE 257
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (220), Expect = 3e-20
Identities = 53/273 (19%), Positives = 89/273 (32%), Gaps = 55/273 (20%)
Query: 408 GFGSIYKAR--------IQDGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL--------- 449
FG + A KVAVK+ E+ +MMK +
Sbjct: 25 AFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINL 84
Query: 450 ------------VLEYMPHGSLEKCL---------------YSSNYILDIFQRLNIMIDV 482
++EY G+L + L ++ L ++ V
Sbjct: 85 LGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQV 144
Query: 483 ALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTC-- 540
A +EYL S IH DL NVL+ + V ++DFG+A+ + D
Sbjct: 145 ARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV 201
Query: 541 ----HHRIYGTRRNPQMNFFSGEMTLKSWVNDL-LPISVMEVVDVNLLSMEDKYFTTKKQ 595
++ Q + +S + L P + V ++ L E
Sbjct: 202 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSN 261
Query: 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
C + ++ + +C P QR K+ V L +I
Sbjct: 262 CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 294
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (221), Expect = 4e-20
Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 46/266 (17%)
Query: 408 GFGSIYKA------RIQDGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL----------- 449
FG +Y+ + + +VA+K + R F +MK+
Sbjct: 32 SFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV 91
Query: 450 ---------VLEYMPHGSLEKCLYSSNYI---------LDIFQRLNIMIDVALALEYLHF 491
++E M G L+ L S + + + + ++A + YL+
Sbjct: 92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN- 150
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR------IY 545
+ +H DL N ++ + + DFGM + + + D R +
Sbjct: 151 --ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK 208
Query: 546 GTRRNPQMNFFSGEMTLKSWVNDL-LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604
+ +S + L P + V ME C +F L
Sbjct: 209 DGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELM 268
Query: 605 MECTAESPKQRINAKESVTRLLKIRD 630
C +PK R + E ++ + + +
Sbjct: 269 RMCWQYNPKMRPSFLEIISSIKEEME 294
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (219), Expect = 6e-20
Identities = 40/279 (14%), Positives = 73/279 (26%), Gaps = 67/279 (24%)
Query: 408 GFGSIYKAR------IQDGMKVAVKVFDLQY-ERAFKSFDVACDMMKK------------ 448
FG + +A VAVK+ ++ ++
Sbjct: 25 AFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 84
Query: 449 ----------LVLEYMPHGSLEKCLYSSNY---------------ILDIFQRLNIMIDVA 483
+++E+ G+L L S L + + VA
Sbjct: 85 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVA 144
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
+E+L S IH DL N+LL V + DFG+A+ + K+
Sbjct: 145 KGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP------DYVRKGD 195
Query: 544 IYGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVV--------------DVNLLSMEDKY 589
+ + + + E+ + E
Sbjct: 196 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR 255
Query: 590 FTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628
++ ++C P QR E V L +
Sbjct: 256 MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.9 bits (217), Expect = 2e-19
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 39/180 (21%)
Query: 401 LSMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDL------QYERAFKSFDVACDM 445
L+MN+FS GFG +Y R G A+K D Q E + + +
Sbjct: 1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL 60
Query: 446 MKK--------------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALA 485
+ +L+ M G L L S + + ++ L
Sbjct: 61 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHL-SQHGVFSEADMRFYAAEIILG 119
Query: 486 LEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
LE++H + +++ DLK +N+LL + +SD G+A K+ + T+
Sbjct: 120 LEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEV 176
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.7 bits (209), Expect = 7e-19
Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 37/245 (15%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAF-KSFDVACDMMKKL---------------- 449
+G + A VAVK+ D++ ++ + K L
Sbjct: 17 AYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN 76
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
LEY G L + + + + + YLH I H D+K
Sbjct: 77 IQYLFLEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPE 132
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY--------GTRRNPQMNFFS 557
N+LL +SDFG+A + ++ N C Y ++ +S
Sbjct: 133 NLLLDERDNLKISDFGLATVFRYNNRERLLNK-MCGTLPYVAPELLKRREFHAEPVDVWS 191
Query: 558 GEMTLKSWVNDLLPISVMEVVDVNLLSMEDK--YFTTKKQCLSFVFNLAMECTAESPKQR 615
+ L + + LP ++K Y K+ S L + E+P R
Sbjct: 192 CGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSAR 251
Query: 616 INAKE 620
I +
Sbjct: 252 ITIPD 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.5 bits (210), Expect = 8e-19
Identities = 66/346 (19%), Positives = 104/346 (30%), Gaps = 58/346 (16%)
Query: 40 CHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM 99
CH V C S L L +P +L LDL N + N+
Sbjct: 10 CHLRVVQC------------SDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNL 54
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159
+L ++ NN + P L +LE L+L N L L L N
Sbjct: 55 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENE 111
Query: 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRL 219
+T V+ L + L + F + L +
Sbjct: 112 ITKVRKSVFNGLNQM----------------IVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279
+ D +T+ L SL + I+ + L NL +
Sbjct: 156 RIADTNITTIPQGL---------------PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIP 339
L+ N ++ +L L+ L +NKL +P + + L N +S
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 340 TCF------GNQTSLRILSLDSNKL--ISIIPSTLWNLKDILYLNL 377
F + S +SL SN + I PST + + L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.1 bits (209), Expect = 1e-18
Identities = 58/281 (20%), Positives = 86/281 (30%), Gaps = 24/281 (8%)
Query: 149 SLSDLDLSHNNLTDVQI---PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205
L + S L V P+ L L N + N L L L N +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFN------ 259
P F L+ L+RL L N L ++ E + VF+ N
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 260 -----CNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPI 314
SG + L+ I +A + L +L L NK+
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL---DGNKITKVD 187
Query: 315 PYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILY 374
L +L +L LS N +S N LR L +N + +P L + K I
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQV 246
Query: 375 LNLSSNFFIS------PLPLEIGNLKVLVGIDLSMNNFSGF 409
+ L +N + P G+ L N +
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 83.6 bits (206), Expect = 2e-18
Identities = 44/257 (17%), Positives = 84/257 (32%), Gaps = 49/257 (19%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA---------CDMMKK--------- 448
+ + + AVK+ D+ +F + +V D+++K
Sbjct: 15 VSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQ 74
Query: 449 ------------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP 496
LV + M G L L + L + IM + + LH
Sbjct: 75 LKDTYETNTFFFLVFDLMKKGELFDYL-TEKVTLSEKETRKIMRALLEVICALH---KLN 130
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFF 556
I+H DLK N+LL ++M L+DFG + L + + T + +
Sbjct: 131 IVHRDLKPENILLDDDMNIKLTDFGFSC-QLDPGEKLREVCGTPSYLAPEIIECSMNDNH 189
Query: 557 SGE----------MTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF---VFNL 603
G + + + + P + + + + M Y + + V +L
Sbjct: 190 PGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDL 249
Query: 604 AMECTAESPKQRINAKE 620
P++R A+E
Sbjct: 250 VSRFLVVQPQKRYTAEE 266
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 4e-18
Identities = 58/297 (19%), Positives = 96/297 (32%), Gaps = 26/297 (8%)
Query: 47 CDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIY 106
C + T + L + +P + ++ Q + L N S +S +L ++
Sbjct: 6 CVCYNEPKVTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 107 FNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFN-LSSLSDLDLSHNNLTDVQI 165
++N L LA LE L L +N ++ + F+ L L L L L ++
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122
Query: 166 P------NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRL 219
L+ L L N + L+ L L N + F L +L RL
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279
L+ N + P +F N+S E ++ L L +
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMT------------LYLFANNLSALPTEALAPLRALQYL 230
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336
L N LQ +++ +P LA L+ N L G
Sbjct: 231 RLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 5e-11
Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 13/228 (5%)
Query: 181 AIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLS 240
A+P I + + L N + +F NL L L+ N +
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----------LARI 71
Query: 241 NCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKL 300
+ + ++ N + L L ++L L P L L
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 301 QLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS 360
Q L DN L+ F L +L L L GN++S F SL L L N++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 361 IIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408
+ P +L ++ L L +N + + L+ L + L+ N +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 8e-11
Identities = 55/259 (21%), Positives = 82/259 (31%), Gaps = 15/259 (5%)
Query: 153 LDLSHNNLTDVQI---PNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNT 209
L V + + + L GN S L+IL L N +
Sbjct: 16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 210 FGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEE 269
F L L++L+L DN S +F L + C +
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATF-----------HGLGRLHTLHLDRCGLQELGPGL 124
Query: 270 ISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDL 329
L L +YL N L T L L L N++ F L SL L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 330 SGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE 389
N+++ P F + L L L +N L ++ L L+ + YL L+ N ++
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA- 243
Query: 390 IGNLKVLVGIDLSMNNFSG 408
L S +
Sbjct: 244 RPLWAWLQKFRGSSSEVPC 262
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 8/174 (4%)
Query: 34 NTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIP 93
+ G + L + +L + +L +L L L N S
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 94 SSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDL 153
+ + SL + + N + P +L L TL+L N L+ ++ L +L L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 154 DLSHNNLT-----DVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF 202
L+ N L+ + ++P + + L N
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDL 281
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 81.3 bits (200), Expect = 1e-17
Identities = 44/262 (16%), Positives = 90/262 (34%), Gaps = 43/262 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKKL-------------- 449
G ++ AR ++ VAVKV + F L
Sbjct: 19 GMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEA 78
Query: 450 ----------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
V+EY+ +L +++ + + + ++ D AL + H IIH
Sbjct: 79 ETPAGPLPYIVMEYVDGVTLRDIVHTEGP-MTPKRAIEVIADACQALNFSH---QNGIIH 134
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY-------GTRRNPQ 552
D+K +N+++ + DFG+A+ + S TQ Y G + +
Sbjct: 135 RDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDAR 194
Query: 553 MNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF---VFNLAMECTA 609
+ +S L + P + V V + + + + + ++ A
Sbjct: 195 SDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALA 254
Query: 610 ESPKQRI-NAKESVTRLLKIRD 630
++P+ R A E L+++ +
Sbjct: 255 KNPENRYQTAAEMRADLVRVHN 276
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (198), Expect = 4e-17
Identities = 39/248 (15%), Positives = 80/248 (32%), Gaps = 38/248 (15%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD---------------LQYERAFKSFDVACDMMKK--- 448
G + + + K A+K+ Q + DV ++
Sbjct: 24 INGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 83
Query: 449 --LVLEYMPHGSLEKCLYS-SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+V+E + G L + + + IM + A++YLH S I H D+K
Sbjct: 84 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPE 140
Query: 506 NVLL---GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHH---RIYGTRRNPQMNFFSGE 559
N+L N + L+DFG AK + T + + + + + +S
Sbjct: 141 NLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLG 200
Query: 560 MTL------KSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF-NLAMECTAESP 612
+ + +++ + + + ++ + +S L P
Sbjct: 201 VIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEP 260
Query: 613 KQRINAKE 620
QR+ E
Sbjct: 261 TQRMTITE 268
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 81.2 bits (199), Expect = 5e-17
Identities = 75/372 (20%), Positives = 133/372 (35%), Gaps = 53/372 (14%)
Query: 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTL 112
+VTTL L + S + L++L ++ S N + P + N++ L+ I NNN +
Sbjct: 45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
P TL+ + + + L+LS N ++D+ + L
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL----NRLELSSNTISDISALSGLTSL 156
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
+ + ++ + L NL+ L +N ++ TP
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP- 214
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPI 292
+L+ S+ + + +++LTNLT + LA N+++ P
Sbjct: 215 -------------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 258
Query: 293 TLCKLQKLQLLSFVDNKLEGPIP--------------------YEFCRLASLYELDLSGN 332
L L KL L N++ P L +L L L N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317
Query: 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGN 392
+S P + T L+ L +NK+ S+L NL +I +L+ N PL N
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--AN 371
Query: 393 LKVLVGIDLSMN 404
L + + L+
Sbjct: 372 LTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 70.4 bits (171), Expect = 2e-13
Identities = 65/340 (19%), Positives = 126/340 (37%), Gaps = 37/340 (10%)
Query: 98 NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157
++ + + + + +L ++ TL + + L++L+ ++ S+
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75
Query: 158 NNLTDVQ-IPNLENLLL----WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGN 212
N LTD+ + NL L+ + N + L++ Q L T N
Sbjct: 76 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 213 LINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISN 272
+ L + D S L L + L+ + + + + + ++
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 273 LTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGN 332
LTNL ++ N+++ P+ + L LS N+L+ L +L +LDL+ N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG--TLASLTNLTDLDLANN 251
Query: 333 KLSGSIPTCFGNQTSLRILSLDSNKLISIIP--------------------STLWNLKDI 372
++S P T L L L +N++ +I P S + NLK++
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 373 LYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
YL L N P + +L L + + N S S+
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL 347
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.4 bits (195), Expect = 1e-16
Identities = 48/275 (17%), Positives = 94/275 (34%), Gaps = 42/275 (15%)
Query: 402 SMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKKL 449
S+ +F FG ++ R +G A+KV + + + + M+ +
Sbjct: 2 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV 61
Query: 450 --------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYL 489
+++Y+ G L L S +V LALEYL
Sbjct: 62 THPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRF-PNPVAKFYAAEVCLALEYL 120
Query: 490 HFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR 549
H S II+ DLK N+LL N ++DFG AK + + + + T+
Sbjct: 121 H---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKP 177
Query: 550 -NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECT 608
N ++++S + + + P + + + V +L
Sbjct: 178 YNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAEL-RFPPFFNEDVKDLLSRLI 236
Query: 609 AESPKQRI-NAKESVTRLLK---IRDLLLKNVKRR 639
QR+ N + + ++++ + + R
Sbjct: 237 TRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSR 271
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 2e-16
Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 33/242 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
FG +++ K ++ ++
Sbjct: 17 EFGIVHRCVETSSKKTYMAKFVKVKGTDQ-VLVKKEISILNIARHRNILHLHESFESMEE 75
Query: 450 ---VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+ E++ + + + +S + L+ + ++ + V AL++LH S I H D++ N
Sbjct: 76 LVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPEN 132
Query: 507 VLLGNNMVAH--LSDFGMAKLLLKEDQSFTQNTNT---CHHRIYGTRRNPQMNFFSGEMT 561
++ + + +FG A+ L D T + + +S
Sbjct: 133 IIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTL 192
Query: 562 LKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF---VFNLAMECTAESPKQRINA 618
+ ++ + P + M +Y ++ + + K R+ A
Sbjct: 193 VYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTA 252
Query: 619 KE 620
E
Sbjct: 253 SE 254
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 76.8 bits (188), Expect = 5e-16
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 27/159 (16%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQYERAF---------------------KSFDVACDMM 446
+G +YKA+ G A+K L+ E K +DV
Sbjct: 14 TYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK 73
Query: 447 KKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
+ +++ L+K L L+ + ++ + + Y H ++H DLK N
Sbjct: 74 RLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQN 130
Query: 507 VLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
+L+ ++DFG+A+ + T+ Y
Sbjct: 131 LLINREGELKIADFGLARAF---GIPVRKYTHEIVTLWY 166
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.5 bits (190), Expect = 5e-16
Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 39/261 (14%)
Query: 401 LSMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK 448
++ F FG + + + G A+K+ D Q + + +++
Sbjct: 38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA 97
Query: 449 L--------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEY 488
+ V+EY+ G + L + L EY
Sbjct: 98 VNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR-FSEPHARFYAAQIVLTFEY 156
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTR 548
LH S +I+ DLK N+L+ ++DFG AK + + I ++
Sbjct: 157 LH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSK 213
Query: 549 R-NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMEC 607
N +++++ + + P + + + + S + +L
Sbjct: 214 GYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI-YEKIVSGKVRFPSHFSSDLKDLLRNL 272
Query: 608 TAESPKQRI-NAKESVTRLLK 627
+R N K V +
Sbjct: 273 LQVDLTKRFGNLKNGVNDIKN 293
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.9 bits (186), Expect = 1e-15
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 34/244 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------- 448
FG ++ A + A+K + + V ++
Sbjct: 14 SFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ 73
Query: 449 ------LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
V+EY+ G L + S + D+ + ++ L L++LH S I++ DL
Sbjct: 74 TKENLFFVMEYLNGGDLMYHIQSCHK-FDLSRATFYAAEIILGLQFLH---SKGIVYRDL 129
Query: 503 KLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR----IYGTRRNPQMNFFSG 558
KL N+LL + ++DFGM K + D T + + G + N ++++S
Sbjct: 130 KLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSF 189
Query: 559 EMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINA 618
+ L + P + ++ D F + +L ++ P++R+
Sbjct: 190 GVLLYEMLIGQSPFHGQDEEELFHSIRMDNPF-YPRWLEKEAKDLLVKLFVREPEKRLGV 248
Query: 619 KESV 622
+ +
Sbjct: 249 RGDI 252
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.6 bits (185), Expect = 2e-15
Identities = 36/272 (13%), Positives = 84/272 (30%), Gaps = 45/272 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFD-LQYERAFKSFDVACDMMKKL---------------- 449
+G + A + ++VA+K +++ + ++ +
Sbjct: 20 AYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPT 79
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
++ ++ L K L + + L + + L+Y+H S ++H D
Sbjct: 80 IEQMKDVYLVTHLMGADLYKLLKTQH--LSNDHICYFLYQILRGLKYIH---SANVLHRD 134
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY--------GTRRNPQM 553
LK SN+LL + DFG+A++ + T R Y +
Sbjct: 135 LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSI 194
Query: 554 NFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPK 613
+ +S L +++ +D + +++ + A P
Sbjct: 195 DIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPH 254
Query: 614 QRINAKESVTRLLK------IRDLLLKNVKRR 639
+ + + +L N +R
Sbjct: 255 KNKVPWNRLFPNADSKALDLLDKMLTFNPHKR 286
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.1 bits (179), Expect = 8e-15
Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 31/242 (12%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY-ERAFKSFDVACDMMKKL---------------- 449
F + A + VA+K + E S + ++ K+
Sbjct: 21 AFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGG 80
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
+++ + G L + + ++ V A++YLH L
Sbjct: 81 HLYLIMQLVSGGELFDRIVEKGF-YTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLL 139
Query: 506 NVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR----IYGTRRNPQMNFFSGEMT 561
L + +SDFG++K + + T + + + ++ +S +
Sbjct: 140 YYSLDEDSKIMISDFGLSK-MEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI 198
Query: 562 LKSWVNDLLPISVMEVVDV--NLLSMEDKYFTTKKQCLSFVF-NLAMECTAESPKQRINA 618
+ P + +L E ++ + +S + + P++R
Sbjct: 199 AYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTC 258
Query: 619 KE 620
++
Sbjct: 259 EQ 260
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 44/248 (17%), Positives = 76/248 (30%), Gaps = 47/248 (18%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVA------CDMMKKL----------- 449
GFGS+Y + D + VA+K + + ++KK+
Sbjct: 16 GFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL 75
Query: 450 -----------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
+LE + L + V A+ + H + ++
Sbjct: 76 DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---NCGVL 132
Query: 499 HCDLKLSNVLL-GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR-----IYGTRRNPQ 552
H D+K N+L+ N L DFG LL +D +T T + Y
Sbjct: 133 HRDIKDENILIDLNRGELKLIDFGSGALL--KDTVYTDFDGTRVYSPPEWIRYHRYHGRS 190
Query: 553 MNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612
+S + L V +P E + + + +C + C A P
Sbjct: 191 AAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV---SSECQHLI----RWCLALRP 243
Query: 613 KQRINAKE 620
R +E
Sbjct: 244 SDRPTFEE 251
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (177), Expect = 2e-14
Identities = 49/271 (18%), Positives = 86/271 (31%), Gaps = 61/271 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERA----------------------FKSFDVACD 444
FG +Y+A+ G VA+K + S + +
Sbjct: 32 SFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE 91
Query: 445 MMKKLVLEYMPHGSLEKCLY--SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDL 502
+ LVL+Y+P + + L + M + +L Y+H S I H D+
Sbjct: 92 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDI 148
Query: 503 KLSNVLL-GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNF------ 555
K N+LL + V L DFG AK L++ + + + + +
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 556 --------------FSGEM---TLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598
F G+ L + L + ++ ++N E K+ K +
Sbjct: 209 AGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWT 268
Query: 599 FVF---------NLAMECTAESPKQRINAKE 620
VF L +P R+ E
Sbjct: 269 KVFRPRTPPEAIALCSRLLEYTPTARLTPLE 299
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 6e-14
Identities = 54/271 (19%), Positives = 92/271 (33%), Gaps = 62/271 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY-----ERAFKSFDVACDMMKKL------------ 449
F ++YKAR VA+K L + + ++ ++++L
Sbjct: 10 QFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF 69
Query: 450 --------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V ++M + ++ +L M+ LEYLH I+H D
Sbjct: 70 GHKSNISLVFDFMETDLE-VIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRD 125
Query: 502 LKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNT---------CHHRIYGTR---- 548
LK +N+LL N V L+DFG+AK ++++T T R+YG
Sbjct: 126 LKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMW 185
Query: 549 -----------RNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597
R P + S L L + + D+ L + + L
Sbjct: 186 AVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPL 245
Query: 598 SFVF--------NLAMECTAESPKQRINAKE 620
+F +L +P RI A +
Sbjct: 246 HHIFSAAGDDLLDLIQGLFLFNPCARITATQ 276
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (173), Expect = 6e-14
Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 39/184 (21%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL--------------- 449
FG ++KAR + G KVA+K ++ E + +++ L
Sbjct: 22 TFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTK 81
Query: 450 -------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTP 496
V ++ H + + +M + L L++ +
Sbjct: 82 ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQML---LNGLYYIHRNK 137
Query: 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNFF 556
I+H D+K +NVL+ + V L+DFG+A+ S + T
Sbjct: 138 ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ----PNRYTNRVVTLWYRPPELL 193
Query: 557 SGEM 560
GE
Sbjct: 194 LGER 197
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.3 bits (171), Expect = 7e-14
Identities = 42/272 (15%), Positives = 83/272 (30%), Gaps = 54/272 (19%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKSFDVACDMMKKL----------------- 449
FG IY I G +VA+K+ ++ + + + K +
Sbjct: 19 SFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGD 76
Query: 450 ----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLS 505
V+E + + + S + L + + +EY+H S IH D+K
Sbjct: 77 YNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPD 132
Query: 506 NVL---LGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR------------N 550
N L + ++ DFG+AK ++ ++ + + GT R +
Sbjct: 133 NFLMGLGKKGNLVYIIDFGLAK-KYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQS 191
Query: 551 PQMNFFS-----GEMTLKSWVNDLLPIS--VMEVVDVNLLSMEDKYFTTKKQCLSFVFNL 603
+ + S L S L + + ++ M K S
Sbjct: 192 RRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATY 251
Query: 604 AMECTAESPKQRINAKESVTRLLKIRDLLLKN 635
C + + + R+L +
Sbjct: 252 LNFCRSLRFDDKPDYSYLRQLF---RNLFHRQ 280
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (169), Expect = 1e-13
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 37/174 (21%)
Query: 403 MNNFS--------GFGSIYKAR-IQDGMKVAVKVF--DLQYERAFKSFDVACDMMKKL-- 449
M NF +G +YKAR G VA+K D + E + ++K+L
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH 60
Query: 450 ------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHF 491
V E++ + S+ + + + + + L + H
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH- 119
Query: 492 GYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
S ++H DLK N+L+ L+DFG+A+ + T+ Y
Sbjct: 120 --SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR---TYTHEVVTLWY 168
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (168), Expect = 2e-13
Identities = 43/265 (16%), Positives = 88/265 (33%), Gaps = 37/265 (13%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQ--YERAFKSFDVACDMMKKL--------------- 449
+G+++KA+ + VA+K L E S ++K+L
Sbjct: 14 TYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD 73
Query: 450 -----VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKL 504
V E+ + + + D + + + L + H ++H DLK
Sbjct: 74 KKLTLVFEFCDQDLKKYFDSCNGDL-DPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKP 129
Query: 505 SNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY-----GTRRNPQMNFFSGE 559
N+L+ N L++FG+A+ + ++ T +R + ++ +S
Sbjct: 130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189
Query: 560 MTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAK 619
N P+ VD L + T ++ + L +
Sbjct: 190 CIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLV 249
Query: 620 ESVTRLLK-----IRDLLLKNVKRR 639
V +L +++LL N +R
Sbjct: 250 NVVPKLNATGRDLLQNLLKCNPVQR 274
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (168), Expect = 3e-13
Identities = 42/257 (16%), Positives = 88/257 (34%), Gaps = 41/257 (15%)
Query: 401 LSMNNFS--------GFGSIYKAR-IQDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK 448
++MN+F FG + R G A+K+ + + +++
Sbjct: 2 VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN 61
Query: 449 L--------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEY 488
V+EY G L L S + + ++ ALEY
Sbjct: 62 TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHL-SRERVFTEERARFYGAEIVSALEY 120
Query: 489 LHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH----HRI 544
LH S +++ D+KL N++L + ++DFG+ K + + + T +
Sbjct: 121 LH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVL 177
Query: 545 YGTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLA 604
++++ + + + LP + + L + ++ + +L
Sbjct: 178 EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEI-RFPRTLSPEAKSLL 236
Query: 605 MECTAESPKQRINAKES 621
+ PKQR+ S
Sbjct: 237 AGLLKKDPKQRLGGGPS 253
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 68.7 bits (167), Expect = 4e-13
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 30/159 (18%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYERAFKS-----------------FDVACDMMKK- 448
+ +++A I + KV VK+ ++ K D+ D + +
Sbjct: 47 KYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRT 106
Query: 449 --LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSN 506
LV E++ + ++ + L + M ++ AL+Y H S I+H D+K N
Sbjct: 107 PALVFEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHN 159
Query: 507 VLLGN-NMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRI 544
V++ + + L D+G+A+ Q + + + +
Sbjct: 160 VMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKG 197
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 68.3 bits (166), Expect = 4e-13
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDL-----QYERAFKS-------------FDVACDMMKK 448
FG I++ + + +VA+K Q +++ + + +
Sbjct: 17 SFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHN 76
Query: 449 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVL 508
+++ + SLE L + + ++ +H +++ D+K N L
Sbjct: 77 VLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFL 133
Query: 509 LGNNMVAH-----LSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRR 549
+G + + DFGM K ++ + + GT R
Sbjct: 134 IGRPNSKNANMIYVVDFGMVK-FYRDPVTKQHIPYREKKNLSGTAR 178
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (164), Expect = 6e-13
Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 40/269 (14%)
Query: 408 GFGSIYKAR--IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL-------------- 449
+G ++KAR G VA+K +Q E S +++ L
Sbjct: 19 AYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDV 78
Query: 450 --------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYST 495
V E++ + ++M + L++LH S
Sbjct: 79 CTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SH 135
Query: 496 PIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCH---HRIYGTRRNPQ 552
++H DLK N+L+ ++ L+DFG+A++ + + + + +
Sbjct: 136 RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATP 195
Query: 553 MNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESP 612
++ +S VD ++ ++ V ++S
Sbjct: 196 VDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSA 255
Query: 613 KQRINAKESVTRLLK--IRDLLLKNVKRR 639
+ + L K + L N +R
Sbjct: 256 QPIEKFVTDIDELGKDLLLKCLTFNPAKR 284
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.6 bits (154), Expect = 3e-12
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 30/143 (20%)
Query: 408 GFGSIYKARIQDGMKVAVKVFDLQY------------------ERAFKSFDVACDMMKKL 449
+++ + + VK + + A +S ++KL
Sbjct: 12 KESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 71
Query: 450 -------VLEYMPHGSL-EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCD 501
V + + L E Y + + ++ + + + I+H D
Sbjct: 72 QGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY---HRGIVHGD 128
Query: 502 LKLSNVLLGNNMVAHLSDFGMAK 524
L NVL+ + + DF +
Sbjct: 129 LSQYNVLVSEEGI-WIIDFPQSV 150
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 48/212 (22%)
Query: 401 LSMNNFS--------GFGSIYKAR----IQDGMKVAVKVFD----LQYERAFKSFDVACD 444
+ + NF +G ++ R G A+KV +Q + +
Sbjct: 21 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQ 80
Query: 445 MMKKL---------------------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVA 483
+++ + +L+Y+ G L L + + ++
Sbjct: 81 VLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIV 139
Query: 484 LALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHR 543
LALE+LH II+ D+KL N+LL +N L+DFG++ + F + +
Sbjct: 140 LALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLS-------KEFVADETERAYD 189
Query: 544 IYGTRRNPQMNFFSGEMTLKSWVNDLLPISVM 575
GT + G + D + V+
Sbjct: 190 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVL 221
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 1e-11
Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 49/254 (19%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY------ERAFKSFDVACDMMKKL----------- 449
F + K R G++ A K + + + + ++K++
Sbjct: 22 QFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEV 81
Query: 450 ---------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHC 500
+LE + G L + L + + + + YLH S I H
Sbjct: 82 YENKTDVILILELVAGGELFDF-LAEKESLTEEEATEFLKQILNGVYYLH---SLQIAHF 137
Query: 501 DLKLSNVLLGNNMVA----HLSDFGMAKLLLKEDQSFTQNTNTCHHR----IYGTRRNPQ 552
DLK N++L + V + DFG+A + F T + +
Sbjct: 138 DLKPENIMLLDRNVPKPRIKIIDFGLAH-KIDFGNEFKNIFGTPEFVAPEIVNYEPLGLE 196
Query: 553 MNFFS-----GEM-TLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAME 606
+ +S + + S + V ED+YF + +
Sbjct: 197 ADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF---SNTSALAKDFIRR 253
Query: 607 CTAESPKQRINAKE 620
+ PK+R+ ++
Sbjct: 254 LLVKDPKKRMTIQD 267
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 4e-10
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 41/167 (24%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL--------------- 449
+G++ A + G KVA+K + E K ++K +
Sbjct: 30 AYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPD 89
Query: 450 -----------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
V+ +M + + L + ++ + L Y+H + II
Sbjct: 90 ETLDDFTDFYLVMPFMGTDLGK---LMKHEKLGEDRIQFLVYQMLKGLRYIH---AAGII 143
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
H DLK N+ + + + DFG+A+ Q+ ++ T R Y
Sbjct: 144 HRDLKPGNLAVNEDCELKILDFGLAR------QADSEMTGYVVTRWY 184
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.9 bits (136), Expect = 3e-09
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 37/177 (20%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKKL--------------- 449
G + A VA+K + + K +MK +
Sbjct: 29 AQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQ 88
Query: 450 -----------VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPII 498
V+E M + D + ++ + +++LH S II
Sbjct: 89 KTLEEFQDVYLVMELMDANLCQVIQMEL----DHERMSYLLYQMLCGIKHLH---SAGII 141
Query: 499 HCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIYGTRRNPQMNF 555
H DLK SN+++ ++ + DFG+A+ T T ++R
Sbjct: 142 HRDLKPSNIVVKSDCTLKILDFGLAR-TAGTSFMMTPYVVTRYYRAPEVILGMGYKE 197
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 7/198 (3%)
Query: 47 CDV-RSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSI 105
C+V + +N +LT+ +P +L L LS N +++ + L +
Sbjct: 4 CEVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 106 YFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD--LSHNNLTD 162
+ ++ L L L+ Q L + + S
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 163 VQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLY 222
+ L+ L L GN P + KL L L N+ +L L NL L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 223 DNYLTSSTPELSFLYSLS 240
+N L + + L
Sbjct: 181 ENSLYTIPKGFFGSHLLP 198
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 4e-08
Identities = 46/241 (19%), Positives = 78/241 (32%), Gaps = 37/241 (15%)
Query: 143 SIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF 202
+ ++S +++ NLT A+P + +IL L +N
Sbjct: 5 EVSKVASHLEVNCDKRNLT-------------------ALPPDLP--KDTTILHLSENLL 43
Query: 203 FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNI 262
+ T L +LNL D + L L QSL + +
Sbjct: 44 YTFSLATLMPYTRLTQLNL-DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 263 SGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLA 322
T + ++ N+L L L +LQ L N+L+ P
Sbjct: 103 --------------TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 323 SLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382
L +L L+ N L+ +L L L N L + IP + + + L N +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
Query: 383 I 383
+
Sbjct: 208 L 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 19/219 (8%)
Query: 95 SIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154
+ ++S L + + L +P +L + L L N L +++ + L+ L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 155 LSHNNLTDVQIPNLENLL---LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211
L LT +Q+ +L +N ++P L++L++ N L
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 212 NLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS 271
L L+ L L N L + P L + N N++ ++
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLS------------LANNNLTELPAGLLN 169
Query: 272 NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKL 310
L NL + L N L +IP L N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 9e-07
Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 10/177 (5%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
T L++S L + + L + L L+L + +L ++
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQL 89
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
+P L L L + N LT ++ L L +L L N L + L
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 174 W------GNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN 224
NN + + L L LQ+NS + IP F L L+ N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 32 NWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGS 91
+ ++ L+++ +LT L L +L TL L N +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186
Query: 92 IPSSIFNMSSLLSIYFNNN 110
IP F L + + N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 59/344 (17%), Positives = 102/344 (29%), Gaps = 34/344 (9%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLF 113
L ++ L L+S +P +L ++L S N + +P + L S+ +NN L
Sbjct: 40 AHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPELPQS---LKSLLVDNNNLK 91
Query: 114 GEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLL 173
L L S+ + S + DV +L+ L
Sbjct: 92 A--------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 137
Query: 174 WGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPEL 233
+ + L + N+ L +L + EL
Sbjct: 138 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 197
Query: 234 SFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPIT 293
L +L + + + ++ + S L N
Sbjct: 198 PELQNLPFLTT--IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255
Query: 294 LCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353
L +L + N I SL EL++S NKL +P L L
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIA 311
Query: 354 DSNKLISIIPSTLWNLKDILYLNLSSNFF--ISPLPLEIGNLKV 395
N L +P NLK L++ N +P + +L++
Sbjct: 312 SFNHLAE-VPELPQNLK---QLHVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 67/312 (21%), Positives = 103/312 (33%), Gaps = 23/312 (7%)
Query: 109 NNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNL 168
NN +PE +L E+L N LT + +L S L + +NNL +
Sbjct: 46 NNLGLSSLPELPPHL---ESLVASCNSLT-ELPELPQSLKS---LLVDNNNLKALSDLPP 98
Query: 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTS 228
L +N + N+S L I+++ NS L N +
Sbjct: 99 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158
Query: 229 STPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNG 288
N + L + S+ N L E+ NL LT IY N L
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218
Query: 289 SIPITLCKLQKLQLLSFVDNKLEG--------PIPYEFCRLASLYELDLSGNKLSGSIPT 340
+ +++ + E F L+ L N S I +
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278
Query: 341 CFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGID 400
SL L++ +NKLI +P+ L+ L S N ++ +P NLK L
Sbjct: 279 LCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFN-HLAEVPELPQNLKQL---H 330
Query: 401 LSMNNFSGFGSI 412
+ N F I
Sbjct: 331 VEYNPLREFPDI 342
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 5e-08
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 15/127 (11%)
Query: 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE 115
L+++ LT L L + LDLS N P ++ + L + E
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCL--EVLQASDNALE 56
Query: 116 IPEELGNLAELETLWLQNNFLTGTIH-SSIFNLSSLSDLDLSHNNLTDVQ---------I 165
+ + NL L+ L L NN L + + + L L+L N+L + +
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 166 PNLENLL 172
P++ ++L
Sbjct: 117 PSVSSIL 123
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 6e-05
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 194 ILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLE 253
+L L L L+ + L+L N L + P L+ L L + + + ++++
Sbjct: 2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 254 VFSMF----------NCNISGGILEEISNLTNLTAIYLAGNKLNG 288
+ N ++ + + L + L GN L
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 301 QLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLIS 360
++L L + +L + LDLS N+L P L +L N L +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57
Query: 361 IIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
+ L L ++ S + + LV ++L N+ I
Sbjct: 58 VDGVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 153 LDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHF---------------------IF 187
L L+H +LT + Q+ + +L L N P +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 188 NASKLSILELQKNSFFDL-IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSL 239
N +L L L N + L LNL N L L +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 44/236 (18%), Positives = 71/236 (30%), Gaps = 32/236 (13%)
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNN 177
LA + + +T T+ + +L ++ L +T ++ + NL L L N
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74
Query: 178 FSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLY 237
+ P L I + + L
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--------TPLA 126
Query: 238 SLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKL 297
LSN + L + S YL+ S L L
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLT--------------NLQYLSIGNAQVSDLTPLANL 172
Query: 298 QKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSL 353
KL L DNK+ P L +L E+ L N++S P N ++L I++L
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 15/214 (7%)
Query: 98 NMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSH 157
+++ + I + + + + +L + TL +T + L++L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 158 NNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLK 217
N +TD+ + + + A SI L S L NL+
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 218 RLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQ--------SLEVFSMFNCNISGGILEE 269
L L N +T+ +P Q S L + IS +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190
Query: 270 ISNLTNLTAIYLAGNKLNGSIPIT-LCKLQKLQL 302
+++L NL ++L N+++ P+ L + L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 46.6 bits (109), Expect = 3e-06
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 14/219 (6%)
Query: 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247
+ + K++ D + T +L + L+ + +T+ + + L+N LE
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGLEL 70
Query: 248 SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307
+ + LE N + + + L +
Sbjct: 71 KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130
Query: 308 ----NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIP 363
I LS S T N + L L D NK+ I P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 364 STLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLS 402
L +L +++ ++L +N PL N L + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 8e-05
Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 10/219 (4%)
Query: 162 DVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNL 221
D + N + +N + + + ++ L + L NL L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70
Query: 222 YDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYL 281
DN +T P + + + + +I+++T L +
Sbjct: 71 KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130
Query: 282 AGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE--FCRLASLYELDLSGNKLSGSIP 339
IT + + L+ L L NK+S P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 340 TCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLS 378
+ +L + L +N++ + P L N ++ + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 43/275 (15%), Positives = 78/275 (28%), Gaps = 21/275 (7%)
Query: 117 PEELGNLAELETLWLQ-NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIP-------NL 168
P+ G L + + + F+ + +DLS++ + + L
Sbjct: 14 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73
Query: 169 ENLLLWGNNFSGAIPHFIFNASKLSILELQK--NSFFDLIPNTFGNLINLKRLNLYDNYL 226
+NL L G S I + + S L L L + + L LNL +
Sbjct: 74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133
Query: 227 TSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKL 286
+ + +S S N S + L
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGY-----RKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188
Query: 287 NGSIPITLCKLQKLQLLSFVD-NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345
+L LQ LS + E + +L L + G G++
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL 248
Query: 346 TSLRIL-----SLDSNKLISIIPSTLWNLKDILYL 375
L+I ++ + + +W +K L L
Sbjct: 249 PHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTL 283
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 38/254 (14%), Positives = 68/254 (26%), Gaps = 24/254 (9%)
Query: 54 VTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIF-NMSSLLSIYFNNNTL 112
V + + E + +Q +DLS + S I S L ++ L
Sbjct: 25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 113 FGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL 172
I L + L L L F+ +L L S + L ++ + +
Sbjct: 84 SDPIVNTLAKNSNLVRLNLSGCS--------GFSEFALQTLLSSCSRLDELNLSWCFDFT 135
Query: 173 LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPE 232
+ A LS + L+ E
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195
Query: 233 LSFLYSLSNCKYLEQSSQSLEVFSMFNCN-ISGGILEEISNLTNLTAIYLAGNKLNGSIP 291
L+ S+ C I L E+ + L + + G +G++
Sbjct: 196 FFQ-------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 292 ITLCKLQKLQLLSF 305
+ L LQ+
Sbjct: 243 LLKEALPHLQINCS 256
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 2e-07
Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 33/166 (19%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVFDLQYER---------------------------AFKSF 439
+GS+ A + G++VAVK ++ F
Sbjct: 30 AYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA 89
Query: 440 DVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIH 499
+ ++ ++ L L ++ + L+Y+H S IIH
Sbjct: 90 RSLEEFNDVYLVTHLMGADLNN--IVKCQKLTDDHVQFLIYQILRGLKYIH---SADIIH 144
Query: 500 CDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
DLK SN+ + + + DFG+A+ E + I
Sbjct: 145 RDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIM 190
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (115), Expect = 1e-06
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 39/174 (22%)
Query: 408 GFGSIYKAR-IQDGMKVAVKVF--DLQYERAFK--------------------------- 437
F +++ A+ + + VA+K+ D Y A +
Sbjct: 25 HFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILK 84
Query: 438 -----SFDVACDMMKKLVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFG 492
+ + +V E + L + + + I + L L+Y+H
Sbjct: 85 LLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR 144
Query: 493 YSTPIIHCDLKLSNVLL-GNNMVAHLSDFGMAKLLLKEDQSFTQNTNTCHHRIY 545
IIH D+K NVL+ + +L +A L TN+ R Y
Sbjct: 145 CG--IIHTDIKPENVLMEIVDSPENLIQIKIAD-LGNACWYDEHYTNSIQTREY 195
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 6e-06
Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 10/188 (5%)
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-IPNLENL-LLWGNNFS 179
LAE L +T T+ + +L ++ L + + + L NL + +N
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 73
Query: 180 GAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSL 239
+ N +KL + + N D+ P + L L+ L L
Sbjct: 74 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133
Query: 240 SNCKYLEQSSQSLEVFSMFNCNISGGI----LEEISNLTNLTAIYLAGNKLNGSIPITLC 295
+L + L+ ++NLT L + ++ NK++ L
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191
Query: 296 KLQKLQLL 303
KL L+ L
Sbjct: 192 KLTNLESL 199
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 43/336 (12%), Positives = 85/336 (25%), Gaps = 38/336 (11%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTL 112
L+ ++ + L S++ + LS N + +I + L F++
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71
Query: 113 FGEIPEELGNLAELETLWLQNNFL---------TGTIHSSIFNLSSLSDLDLSHNNLTDV 163
E L L L+ L G L H L +
Sbjct: 72 GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131
Query: 164 QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSF-FDLIPNTFGNLINLKRLNLY 222
+ + A+ NA L + +N + + + L+
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191
Query: 223 DNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLA 282
PE L Y ++ + F S + + + NL + L
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Query: 283 GNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTC- 341
L+ + + L L L N++
Sbjct: 252 DCLLSARGAAAVVD------------------AFSKLENIGLQTLRLQYNEIELDAVRTL 293
Query: 342 ----FGNQTSLRILSLDSNKLISIIPSTLWNLKDIL 373
L L L+ N+ S + ++++
Sbjct: 294 KTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVF 328
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 27/241 (11%), Positives = 59/241 (24%), Gaps = 11/241 (4%)
Query: 149 SLSDLDLSHNNLTDV--QIP-NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDL 205
S + +T++ +P N L ++
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSG--------FGDLEKIEI 60
Query: 206 IPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG 265
N +I + + + L ++ + + + S
Sbjct: 61 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120
Query: 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLY 325
+ + S L I N + + +L N ++ F
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180
Query: 326 ELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISP 385
N L F + IL + ++ S+ L NLK + + + +
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT 240
Query: 386 L 386
L
Sbjct: 241 L 241
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 8e-05
Identities = 28/230 (12%), Positives = 55/230 (23%), Gaps = 5/230 (2%)
Query: 128 TLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIF 187
Q + +T I S + + +L L +Q + +
Sbjct: 12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSG--FGDLEKIEISQNDVL 66
Query: 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247
+ + I L L + + L + +
Sbjct: 67 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126
Query: 248 SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVD 307
+ L + + ++L N + Q +L +
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186
Query: 308 NKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357
N LE F + LD+S ++ N LR S + K
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 27/270 (10%), Positives = 63/270 (23%), Gaps = 41/270 (15%)
Query: 40 CHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM 99
C C +T IPS+L + L +
Sbjct: 8 CSNRVFLC------------QESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGF 52
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159
L I + N + I ++ + + + + L +N
Sbjct: 53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112
Query: 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRL 219
+P++ + + + + + L
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW------------- 159
Query: 220 NLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279
L+ +Q E+ N N+ + + +
Sbjct: 160 -------------LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206
Query: 280 YLAGNKLNGSIPITLCKLQKLQLLSFVDNK 309
++ +++ L L+KL+ S + K
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 81 LDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTI 140
L L+ N + +NN L + + L + +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 141 HSSIFNLSSLSDLDLSHNNLTDVQIPNLE 169
+ NL L NL ++P LE
Sbjct: 218 SYGLENLKKLRARST--YNLK--KLPTLE 242
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 18/198 (9%)
Query: 40 CHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNM 99
C T V C +G L IP ++ L L+ N +F
Sbjct: 8 CEGTTVDC------------TGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGR 52
Query: 100 SSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHN 158
L I A I + +F L L L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 159 NLTDVQIPNLENLL-LWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIP-NTFGNLINL 216
++ V + E+L L N + + + + + +K+ + ++
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDV 172
Query: 217 KRLNLYDNYLTSSTPELS 234
+ +L + S+
Sbjct: 173 QIKDLPHSEFKCSSENSE 190
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 6/154 (3%)
Query: 9 HLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTI 68
L+ + + + L + +
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 69 PSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELET 128
L L+TL+L N S +P S +++SL S+ +N LA
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-----LAWFAE 149
Query: 129 LWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLT 161
+ + G + + DL H+
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.4 bits (90), Expect = 5e-04
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
Query: 258 FNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYE 317
N L +L + L N+L G P +Q L +NK++
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 318 FCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNL 377
F L L L+L N++S +P F + SL L+L SN W + + +L
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSL 156
Query: 378 SSNFFISPLPLEIGNLKVLVGIDLSMNNF 406
+ P ++ ++++ DL + F
Sbjct: 157 NGGAARCGAPSKVRDVQIK---DLPHSEF 182
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 12/194 (6%)
Query: 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEI 116
N+ S+T + L+S+ + + + I + ++ ++ N N L
Sbjct: 29 DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84
Query: 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGN 176
P L NL L L+L N + L+ + + + + + L+
Sbjct: 85 P--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142
Query: 177 NFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFL 236
N + +KL L L+ N D++P L L+ L L N+++ L L
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD----LRAL 196
Query: 237 YSLSNCKYLEQSSQ 250
L N LE SQ
Sbjct: 197 AGLKNLDVLELFSQ 210
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 34/216 (15%)
Query: 122 NLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ----IPNLENLLLWGNN 177
AE L+ +T + + L+S+ + +++++ VQ +PN+ L L GN
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79
Query: 178 FSGA--IPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSF 235
+ + + K+ +L N L S
Sbjct: 80 LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139
Query: 236 LYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLC 295
+ + S+ ++ ++ + + ++ LT L +YL+ N ++ +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR---- 194
Query: 296 KLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331
L +L L+L
Sbjct: 195 ---------------------ALAGLKNLDVLELFS 209
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 275 NLTAIYLAGNKLNGSIPITLCK-LQKLQLLSFVDNKLEG----PIPYEFCRLASLYELDL 329
++ ++ + +L+ + L LQ+ Q++ D L I +L EL+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 330 SGNKLSGSIPTCFG-----NQTSLRILSLDSN 356
N+L C ++ LSL +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 27/105 (25%)
Query: 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136
+Q+LD+ S + + + L L + + + L + L
Sbjct: 3 DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39
Query: 137 TG----TIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNN 177
T I S++ +L++L+L N L DV + + L +
Sbjct: 40 TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 84
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 125 ELETLWLQNNFLTGTIHSSIF-NLSSLSDLDLSHNNLTDVQI----------PNLENLLL 173
++++L +Q L+ + + L + L LT+ + P L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 174 WGNNFSGAIPHFIFNASKLSILELQK 199
N H + + ++QK
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQK 88
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 32 NWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTST----IPSELGNLSSLQTLDLSFNW 87
N + L ++ ++ + + + L SL+ LDLS N
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408
Query: 88 FSGSIPSSIF-----NMSSLLSIYFNNNTLFGEIPEELGNLAE 125
+ + L + + E+ + L L +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 51 SYRVTTLNISGLSLTSTIPSEL-GNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSI 105
S + +L+I L+ +EL L Q + L + I S++ +L +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 106 YFNNNTLFGEIPEELGNLAELETLWLQNNFLTG 138
+N L + + + +Q L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 126 LETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNNLTDVQI-----------PNLEN 170
L LWL + ++ + + +++ SL +LDLS+N L D I LE
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 171 LLLWGNNFSGAIPHFI 186
L+L+ +S + +
Sbjct: 431 LVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 21/146 (14%), Positives = 35/146 (23%), Gaps = 25/146 (17%)
Query: 32 NWNTSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGS 91
S + + +++ + + S L+ L L+ S S
Sbjct: 325 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 384
Query: 92 IPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIF-----N 146
SS+ L L L L NN L +
Sbjct: 385 SCSSLAAT--------------------LLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 147 LSSLSDLDLSHNNLTDVQIPNLENLL 172
L L L ++ L+ L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.004
Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 214 INLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEIS-- 271
++++ L++ L+ + L L C+ + + +C ++ ++IS
Sbjct: 2 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVV----------RLDDCGLTEARCKDISSA 50
Query: 272 --NLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFC 319
L + L N+L + + + L+
Sbjct: 51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 317 EFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLN 376
++ ELDL G K+ I + N++ + L+ + L
Sbjct: 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69
Query: 377 LSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFGSI 412
+++N L L + L+ N+ G +
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 105
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 5/142 (3%)
Query: 70 SELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETL 129
++ N + LDL I + + +I F++N + + L L+TL
Sbjct: 12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68
Query: 130 WLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLL--LWGNNFSGAIPHFIF 187
+ NN + L L++L L++N+L ++ + L L
Sbjct: 69 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128
Query: 188 NASKLSILELQKNSFFDLIPNT 209
+ I ++ + D
Sbjct: 129 HYRLYVIYKVPQVRVLDFQKVK 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 639 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.95 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.94 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.93 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.93 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.93 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.93 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.93 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.93 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.93 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.93 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.92 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.91 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.91 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.91 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.91 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.9 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.9 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.9 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.89 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.89 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.88 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.88 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.88 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.86 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.86 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.86 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.86 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.85 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.85 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.84 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.84 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.83 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.83 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.83 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.83 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.83 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.82 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.81 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.8 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.8 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.8 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.79 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.79 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.79 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.79 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.78 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.76 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.76 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.76 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.62 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.58 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.49 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.43 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.39 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.37 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 99.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.25 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.07 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.17 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.31 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.11 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.68 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.62 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 92.16 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.3e-39 Score=331.18 Aligned_cols=291 Identities=31% Similarity=0.469 Sum_probs=206.2
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCCCCCCcC--ccceecCCCC--CcEEEEEeCCCCCcc--cCCcCCCCCCCCCE
Q 041082 7 NNHLSFQVFVLKGHVTDDPTNFLAKNWNTSSTVCH--WTGVSCDVRS--YRVTTLNISGLSLTS--TIPSELGNLSSLQT 80 (639)
Q Consensus 7 ~~~~~~~ll~~k~~~~~~~~~~l~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~p~~l~~l~~L~~ 80 (639)
...|.+||++||+++. ||. .+++ |..++|||. |.||+|+... .+|+.|+|++++++| .+|++|++|++|++
T Consensus 4 ~~~e~~aLl~~k~~~~-~~~-~l~s-W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 4 NPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CHHHHHHHHHHHHHCC-CCC-cCCC-CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence 3578999999999985 664 6777 988889994 9999998743 489999999999987 57899999999999
Q ss_pred EeccC-CcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCC
Q 041082 81 LDLSF-NWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 81 L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
|+|++ |++.|.+|.+|+++++|++|+|++|++.+..|..+..+..|+.+++++|.+.+.+|..+.++++|+.+++++|
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n- 159 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN- 159 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc-
Confidence 99986 8899899999999999999999999999888888888999999999999888888888877665555555444
Q ss_pred CCCCCCCCccEEEccCCccCccCCccccCCCCC-cEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhcc
Q 041082 160 LTDVQIPNLENLLLWGNNFSGAIPHFIFNASKL-SILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYS 238 (639)
Q Consensus 160 l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 238 (639)
.+.+.+|..+..+..+ +.+++++|++++..|..++.+..+ .+
T Consensus 160 -----------------~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l------------------- 202 (313)
T d1ogqa_ 160 -----------------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FV------------------- 202 (313)
T ss_dssp -----------------CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EE-------------------
T ss_pred -----------------ccccccccccccccccccccccccccccccccccccccccc-cc-------------------
Confidence 4445566666555554 566666666666555554433221 23
Q ss_pred ccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhh
Q 041082 239 LSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEF 318 (639)
Q Consensus 239 l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 318 (639)
++..+.+.+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|..|
T Consensus 203 -----------------~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l 264 (313)
T d1ogqa_ 203 -----------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp -----------------ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred -----------------cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHH
Confidence 333334444445555556666666666666655443 35555666666666666666666666
Q ss_pred cCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041082 319 CRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNK 357 (639)
Q Consensus 319 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 357 (639)
+.+++|+.|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus 265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 6666666666666666665553 3455555555555554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=9e-30 Score=257.99 Aligned_cols=232 Identities=27% Similarity=0.404 Sum_probs=151.0
Q ss_pred CCCCEEeccCCcCCc--cCCccccCCcccceeeccC-CcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCE
Q 041082 76 SSLQTLDLSFNWFSG--SIPSSIFNMSSLLSIYFNN-NTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSD 152 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 152 (639)
.+++.|+|++|.+.| .+|.+++++++|++|+|++ |+++|.+|.+|++|++|++|+|++|++.+..+..+..+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 468899999999988 5889999999999999986 8899999999999999999999999999888877777655555
Q ss_pred EecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCC-CEEEccCCCCCCCCC
Q 041082 153 LDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINL-KRLNLYDNYLTSSTP 231 (639)
Q Consensus 153 L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~ 231 (639)
++++ .|++.+.+|..+.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus 130 l~l~------------------~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~---- 187 (313)
T d1ogqa_ 130 LDFS------------------YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---- 187 (313)
T ss_dssp EECC------------------SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----
T ss_pred cccc------------------cccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc----
Confidence 5444 444555677777778888888888888777777766655443 44444444333
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
+..+..+..+.. ..++++.+.+.+.+|..+..+++++.+++++|.+.
T Consensus 188 --------------------------------~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 188 --------------------------------GKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp --------------------------------EECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred --------------------------------cccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 333333433332 34566666555555555555555555555555555
Q ss_pred CCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccch
Q 041082 312 GPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIP 363 (639)
Q Consensus 312 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 363 (639)
+.+| .++.+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|
T Consensus 235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP 285 (313)
T d1ogqa_ 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence 4433 34444455555555555544444444444444444444444444443
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.6e-29 Score=243.48 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=141.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~ 466 (639)
.+||.||++...++..||||++.... .....|..|+..++. +||||+++|+|.+++...
T Consensus 16 G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~ 94 (263)
T d1sm2a_ 16 GQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQ 94 (263)
T ss_dssp CSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTT
T ss_pred CCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhcc
Confidence 56899999999888899999987543 234578888877543 689999999999998876
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-c----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-Q---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-~---------- 535 (639)
...++|..+.+|+.+||+||+|+| ..+|+||||||+||++|+++.+||+|||+|+.......... .
T Consensus 95 ~~~~~~~~~~~i~~qia~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aP 171 (263)
T d1sm2a_ 95 RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASP 171 (263)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCCh
Confidence 677999999999999999999999 66799999999999999999999999999987654322100 0
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | |++.|.... .....+.+.+.... ....| ..+...+.
T Consensus 172 E~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~-~~~~~~~~~i~~~~-----~~~~p-------------~~~~~~l~ 232 (263)
T d1sm2a_ 172 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN-RSNSEVVEDISTGF-----RLYKP-------------RLASTHVY 232 (263)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS-CCHHHHHHHHHHTC-----CCCCC-------------TTSCHHHH
T ss_pred HHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCC-CCHHHHHHHHHhcC-----CCCCc-------------cccCHHHH
Confidence 1112367888 6 643333211 11111222222111 11111 12234577
Q ss_pred HHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 602 NLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+++.+||+.+|++||||.||+++|++++++
T Consensus 233 ~li~~cl~~~p~~Rps~~~il~~L~~i~es 262 (263)
T d1sm2a_ 233 QIMNHCWKERPEDRPAFSRLLRQLAEIAES 262 (263)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence 899999999999999999999999998764
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=2.7e-26 Score=238.81 Aligned_cols=314 Identities=30% Similarity=0.387 Sum_probs=240.5
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++++++.. +.+..|++|++|+|++|+|++. | .+.++++|++|++++|.+.+..| ++++++|+.|+++
T Consensus 45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~ 118 (384)
T d2omza2 45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 118 (384)
T ss_dssp TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccccc--ccccccccccccc
Confidence 688999999988753 3578899999999999999864 4 38899999999999999876543 8899999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC-------------------------CCCccEEEccCCccCccCCcccc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ-------------------------IPNLENLLLWGNNFSGAIPHFIF 187 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-------------------------l~~L~~L~L~~N~l~~~~p~~~~ 187 (639)
+|.+++..+ ......+..+....|.+.... .+.........|.. ..+..+.
T Consensus 119 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 194 (384)
T d2omza2 119 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLA 194 (384)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CCCGGGG
T ss_pred ccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc--ccccccc
Confidence 999886543 344556667666666544321 11222233333332 2334556
Q ss_pred CCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccc
Q 041082 188 NASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGIL 267 (639)
Q Consensus 188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~ 267 (639)
.+++++.+++++|.+++..| +...++|++|++++|.++..+ . +. ...+++.+++++|.+++..
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~------l~-------~l~~L~~L~l~~n~l~~~~- 257 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-T------LA-------SLTNLTDLDLANNQISNLA- 257 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G------GG-------GCTTCSEEECCSSCCCCCG-
T ss_pred cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-h------hh-------cccccchhccccCccCCCC-
Confidence 77889999999999888765 456788999999999887642 1 11 1246788899999888744
Q ss_pred hhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCC
Q 041082 268 EEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTS 347 (639)
Q Consensus 268 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 347 (639)
.+..+++|+.|++++|.+++..+ +..+..++.+.+..|++.+. ..+..+++++.|++++|++++..+ +..+++
T Consensus 258 -~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~ 330 (384)
T d2omza2 258 -PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTK 330 (384)
T ss_dssp -GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred -cccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCC
Confidence 37788999999999999886433 66788899999999998863 347788999999999999987643 788999
Q ss_pred CCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCC
Q 041082 348 LRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMN 404 (639)
Q Consensus 348 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N 404 (639)
|+.|++++|+++++ + .+.++++|++|++++|++++..| +.++++|+.|++++|
T Consensus 331 L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 331 LQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 99999999998874 3 58889999999999999987654 788999999999987
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5e-29 Score=246.42 Aligned_cols=205 Identities=22% Similarity=0.378 Sum_probs=144.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhh--hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++...+ .||||++.... ....+.|..|+.+++. +|+||+++|+|.++++.
T Consensus 19 G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~ 96 (276)
T d1uwha_ 19 GSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHI 96 (276)
T ss_dssp CSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCEEEHHHHHHT
T ss_pred CCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCCCCHHHHHhh
Confidence 5799999998753 59999986543 3345678888887542 78999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-------cc----
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-------FT---- 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-------~~---- 534 (639)
....++|..+.+|+.|||+||+||| +.+|+||||||+|||++.++.+||+|||+|+........ .+
T Consensus 97 ~~~~~~~~~~~~i~~qi~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~ 173 (276)
T d1uwha_ 97 IETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWM 173 (276)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccC
Confidence 6567999999999999999999999 568999999999999999999999999999876532211 00
Q ss_pred --c-------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 --Q-------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 --~-------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++||| | ||+.|..+.- ....+...+.... ..|.+. ....++
T Consensus 174 APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~-~~~~~~~~~~~~~-------~~p~~~-------~~~~~~ 238 (276)
T d1uwha_ 174 APEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIFMVGRGY-------LSPDLS-------KVRSNC 238 (276)
T ss_dssp CHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHHTS-------CCCCGG-------GSCTTC
T ss_pred CHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCC-hHHHHHHHHhcCC-------CCCcch-------hccccc
Confidence 0 0012367888 6 7887765321 1111111111111 111110 011233
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+||+.+|++||||.||+++|+.++++
T Consensus 239 ~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~ 273 (276)
T d1uwha_ 239 PKAMKRLMAECLKKKRDERPLFPQILASIELLARS 273 (276)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence 44677899999999999999999999999988754
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3e-28 Score=240.67 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=145.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.+||.||++...++..||||++..... ..+.|..|+..++. +||||+++|+|.+++...
T Consensus 24 G~fg~Vy~~~~~~~~~vAvK~~~~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g~L~~~~~~~~ 102 (272)
T d1qpca_ 24 GQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPS 102 (272)
T ss_dssp ETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHHHHTTSHH
T ss_pred CCCcEEEEEEECCCCEEEEEEEccCcC-CHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCCcHHHHHhhcC
Confidence 569999999999889999999975432 34568888877543 789999999999887652
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~---------- 535 (639)
...++|..+.+|+.+||+||+||| ..+|+||||||+|||+++++.+||+|||+|+.+...... ...
T Consensus 103 ~~~l~~~~~~~i~~qi~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~AP 179 (272)
T d1qpca_ 103 GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179 (272)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccCh
Confidence 235899999999999999999999 668999999999999999999999999999987543321 000
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|..... ....+...+.... .... +..+...+.
T Consensus 180 E~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~-~~~~~~~~i~~~~-----~~~~-------------p~~~~~~l~ 240 (272)
T d1qpca_ 180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-TNPEVIQNLERGY-----RMVR-------------PDNCPEELY 240 (272)
T ss_dssp HHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHHHHHTTC-----CCCC-------------CTTCCHHHH
T ss_pred HHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcC-----CCCC-------------cccChHHHH
Confidence 0112378888 6 7655543211 1112222221110 0111 112233577
Q ss_pred HHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 602 NLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
+++.+|++.+|++||||.||+++|+.+-
T Consensus 241 ~li~~cl~~~P~~Rpt~~ei~~~L~~~f 268 (272)
T d1qpca_ 241 QLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (272)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence 8899999999999999999999998764
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-27 Score=235.49 Aligned_cols=207 Identities=21% Similarity=0.327 Sum_probs=151.3
Q ss_pred CCcCcceEEEec---CCceeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARIQ---DGMKVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l~---~g~~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||+|... .+..||||++.... ....+.|..|+++++. +||||+++|+|.+++
T Consensus 20 G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~~~l 99 (285)
T d1u59a_ 20 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFL 99 (285)
T ss_dssp CTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHH
T ss_pred ccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHHHHh
Confidence 578999999764 34579999986543 2335678888877543 789999999999988
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-----
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ----- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~----- 535 (639)
......++|..+.+|+.++|+||+||| +.+|+||||||+||+++.++.+||+|||+|+.+....... ..
T Consensus 100 ~~~~~~l~~~~~~~i~~qi~~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~ 176 (285)
T d1u59a_ 100 VGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPL 176 (285)
T ss_dssp TTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCG
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCc
Confidence 766667999999999999999999999 5689999999999999999999999999999775433210 00
Q ss_pred ----------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHH
Q 041082 536 ----------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQ 595 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 595 (639)
...+.++||| | | |+.|..+.- ...+...+.... . .+.++.
T Consensus 177 ~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~--~~~~~~~i~~~~---~---------------~~~p~~ 236 (285)
T d1u59a_ 177 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGK---R---------------MECPPE 236 (285)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHHTTC---C---------------CCCCTT
T ss_pred cccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC--HHHHHHHHHcCC---C---------------CCCCCc
Confidence 0112278888 6 5 777775421 112222222110 0 011122
Q ss_pred HHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHhh
Q 041082 596 CLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 596 ~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
+...+.+|+..||+.+|++||||.+|+++|+.+..+..+.+
T Consensus 237 ~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~~~~~ 277 (285)
T d1u59a_ 237 CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 277 (285)
T ss_dssp CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhhhcc
Confidence 33457789999999999999999999999998876655443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.9e-25 Score=232.31 Aligned_cols=295 Identities=29% Similarity=0.386 Sum_probs=232.9
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.+++.|+|++|.+++.. .|+++++|++|++++|.+.+.. .++++++|+.|++++|.+++..+ ......+..+..
T Consensus 66 ~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~ 139 (384)
T d2omza2 66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 139 (384)
T ss_dssp TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred CCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccc
Confidence 47899999999998753 3999999999999999998643 38999999999999999887544 345567777877
Q ss_pred ccccCccccCc-------------------cccCCCCCCEEecCCCCCCC----CCCCCccEEEccCCccCccCCccccC
Q 041082 132 QNNFLTGTIHS-------------------SIFNLSSLSDLDLSHNNLTD----VQIPNLENLLLWGNNFSGAIPHFIFN 188 (639)
Q Consensus 132 ~~N~l~~~~p~-------------------~~~~l~~L~~L~Ls~N~l~~----~~l~~L~~L~L~~N~l~~~~p~~~~~ 188 (639)
..|.+....+. .+.............|.... ..+++++.+++++|.+++..| +..
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~ 217 (384)
T d2omza2 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI 217 (384)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccc
Confidence 77766433221 22233344444555554433 237889999999999987665 345
Q ss_pred CCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccch
Q 041082 189 ASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILE 268 (639)
Q Consensus 189 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~ 268 (639)
.++|+.|++++|.+... +.+..+++|+.+++++|.+++.++ +.. ..+++.++++++.+.+..
T Consensus 218 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-------~~~-------~~~L~~L~l~~~~l~~~~-- 279 (384)
T d2omza2 218 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-------LSG-------LTKLTELKLGANQISNIS-- 279 (384)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-------GTT-------CTTCSEEECCSSCCCCCG--
T ss_pred cCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc-------ccc-------cccCCEeeccCcccCCCC--
Confidence 68899999999998764 357889999999999999887532 111 246888999999888643
Q ss_pred hhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCC
Q 041082 269 EISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSL 348 (639)
Q Consensus 269 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 348 (639)
.+..++.++.+.++.|.+++. ..+..+++++.|++++|++++..+ +..+++|+.|++++|++++ ++ .+.++++|
T Consensus 280 ~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L 353 (384)
T d2omza2 280 PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNI 353 (384)
T ss_dssp GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCC
Confidence 477889999999999999863 357788999999999999997643 7889999999999999985 33 68999999
Q ss_pred CEEeCCCCcCcccchhhhhcCCCCcEEEcccC
Q 041082 349 RILSLDSNKLISIIPSTLWNLKDILYLNLSSN 380 (639)
Q Consensus 349 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N 380 (639)
++|++++|++++..| +.++++|+.|++++|
T Consensus 354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999999998766 889999999999988
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=4.8e-25 Score=221.97 Aligned_cols=250 Identities=22% Similarity=0.293 Sum_probs=152.6
Q ss_pred CCCCCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCC
Q 041082 35 TSSTVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFG 114 (639)
Q Consensus 35 ~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 114 (639)
+..+.|.|++|.|+. ++++ .+|..+. +++++|+|++|+|+...+.+|.++++|+.|++++|.+..
T Consensus 5 p~~c~c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~ 69 (305)
T d1xkua_ 5 PFRCQCHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69 (305)
T ss_dssp CTTCEEETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccc
Confidence 345667888888874 3454 4677665 689999999999986555678999999999999999988
Q ss_pred CCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcE
Q 041082 115 EIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSI 194 (639)
Q Consensus 115 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 194 (639)
..|..|.++++|++|++++|+++. +|..+ ...++.|+++.|.+. +..+..+.....+..
T Consensus 70 i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~------------------~l~~~~~~~~~~~~~ 128 (305)
T d1xkua_ 70 ISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEIT------------------KVRKSVFNGLNQMIV 128 (305)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCC------------------BBCHHHHTTCTTCCE
T ss_pred cchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchh------------------hhhhhhhhccccccc
Confidence 888889999999999999999874 44332 234555555555444 333444445556666
Q ss_pred EEcccCCC--cccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcC
Q 041082 195 LELQKNSF--FDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISN 272 (639)
Q Consensus 195 L~L~~N~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~ 272 (639)
++...|.. ....+..|..+++|+.+++++|.++..+... ..+++.+++++|...+..+..+..
T Consensus 129 l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~---------------~~~L~~L~l~~n~~~~~~~~~~~~ 193 (305)
T d1xkua_ 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---------------PPSLTELHLDGNKITKVDAASLKG 193 (305)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---------------CTTCSEEECTTSCCCEECTGGGTT
T ss_pred cccccccccccCCCccccccccccCccccccCCccccCccc---------------CCccCEEECCCCcCCCCChhHhhc
Confidence 66666643 2333445667777777887777765432110 123444444444444444444445
Q ss_pred CCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcc
Q 041082 273 LTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSG 336 (639)
Q Consensus 273 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 336 (639)
++.++.|++++|.+.+..+..+..+++|++|+|++|+++ .+|..|..+++|+.|++++|+|+.
T Consensus 194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence 555555555555555444444444455555555555444 233444444444445444444443
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.4e-27 Score=237.30 Aligned_cols=201 Identities=22% Similarity=0.415 Sum_probs=137.7
Q ss_pred CCcCcceEEEecC-C---ceeeeEEechhh-hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-G---MKVAVKVFDLQY-ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g---~~vavK~l~~~~-~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~ 461 (639)
.+||.||++.... + ..+|||.+.... ....+.|..|+++++. +||||+++|+|.+
T Consensus 37 G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~ 116 (299)
T d1jpaa_ 37 GEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDS 116 (299)
T ss_dssp CSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHH
T ss_pred CCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCccee
Confidence 5699999998753 2 368899876433 3344678888888543 6899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc-----c-
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT-----Q- 535 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~-----~- 535 (639)
++......++|.++.+|+.+||+||+||| +.+|+||||||+|||+|.++.+||+|||+|+.+.......+ .
T Consensus 117 ~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~ 193 (299)
T d1jpaa_ 117 FLRQNDGQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGG 193 (299)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------------------
T ss_pred eeccccCCCCHHHHHHHHHHHHHHHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccc
Confidence 88776667999999999999999999999 66899999999999999999999999999997754322100 0
Q ss_pred --------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | | |+.|..+. ....+...+.... ..+
T Consensus 194 ~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~--~~~~~~~~i~~~~------------------~~~ 253 (299)
T d1jpaa_ 194 KIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM--TNQDVINAIEQDY------------------RLP 253 (299)
T ss_dssp --CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHHHHHTTC------------------CCC
T ss_pred cCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCC------------------CCC
Confidence 0112267787 6 5 66666431 1112222222110 001
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+.++...+.+++.+||+.+|++||||.||+++|+++.+
T Consensus 254 ~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~ 292 (299)
T d1jpaa_ 254 PPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR 292 (299)
T ss_dssp CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 122334467789999999999999999999999998754
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=7.5e-27 Score=232.17 Aligned_cols=200 Identities=20% Similarity=0.314 Sum_probs=144.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .+..||||++..+.. ..+.|..|+.+++. +|+||+++|+|.+++..
T Consensus 28 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~ 106 (287)
T d1opja_ 28 GQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 106 (287)
T ss_dssp TTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred CCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhh
Confidence 569999999875 578999999875433 34578888887543 68999999999999865
Q ss_pred -CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-ccc-------
Q 041082 466 -SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQN------- 536 (639)
Q Consensus 466 -~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~~------- 536 (639)
....++|..+.+|+.+||+||+||| ..+|+||||||+|||+|.++.+||+|||+|+....+.... ...
T Consensus 107 ~~~~~~~~~~~~~i~~qi~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~ 183 (287)
T d1opja_ 107 CNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183 (287)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeecccccccccc
Confidence 3457899999999999999999999 5689999999999999999999999999999876543221 000
Q ss_pred --------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 537 --------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 537 --------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
..+.++||| | ||+.|..... ....+.+.+.... . .+.+..+...
T Consensus 184 aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~-~~~~~~~~i~~~~------------~------~~~~~~~~~~ 244 (287)
T d1opja_ 184 APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQVYELLEKDY------------R------MERPEGCPEK 244 (287)
T ss_dssp CHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHHHHHHHHTTC------------C------CCCCTTCCHH
T ss_pred ChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc-hHHHHHHHHhcCC------------C------CCCCccchHH
Confidence 112267777 5 5554432210 1111112221110 0 0111223345
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 600 VFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
+.+++.+|++.+|++||||.||++.|+.+.
T Consensus 245 l~~li~~cl~~dP~~Rps~~ei~~~L~~~~ 274 (287)
T d1opja_ 245 VYELMRACWQWNPSDRPSFAEIHQAFETMF 274 (287)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 778999999999999999999999998874
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.9e-27 Score=234.30 Aligned_cols=204 Identities=21% Similarity=0.368 Sum_probs=146.6
Q ss_pred CCcCcceEEEecCC----ceeeeEEech-hhhhhhhhHHHHHHHHHh---------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG----MKVAVKVFDL-QYERAFKSFDVACDMMKK---------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g----~~vavK~l~~-~~~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~ 460 (639)
.+||.||+|.+..+ ..||||+++. ........|..|++.++. +||||+++|+|.
T Consensus 38 G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~ 117 (311)
T d1r0pa_ 38 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR 117 (311)
T ss_dssp ETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHH
T ss_pred cCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchh
Confidence 46899999997543 3689999864 233445678888887542 689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----cc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF----TQ- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~----~~- 535 (639)
++++.....++|..+.+++.++|+||.|+| ..+|+||||||+|||+|+++.+||+|||+++.+....... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~i~~qia~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~ 194 (311)
T d1r0pa_ 118 NFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 194 (311)
T ss_dssp HHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCS
T ss_pred hhhccccccchHHHHHHHHHHHHHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccc
Confidence 998876667889999999999999999999 6789999999999999999999999999999775433210 00
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | ||+.|..... ....+..++.... ...+
T Consensus 195 ~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~-~~~~~~~~i~~g~-----~~~~------------- 255 (311)
T d1r0pa_ 195 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQGR-----RLLQ------------- 255 (311)
T ss_dssp SCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTC-----CCCC-------------
T ss_pred cccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC-CHHHHHHHHHcCC-----CCCC-------------
Confidence 0112267888 6 6666543211 1222233332111 1111
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLL 632 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~ 632 (639)
+..+...+.+++.+||+.+|++||+|.||+++|+++...+
T Consensus 256 p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~ 295 (311)
T d1r0pa_ 256 PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 295 (311)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred cccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhh
Confidence 1122345778999999999999999999999999987653
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.3e-27 Score=231.74 Aligned_cols=203 Identities=24% Similarity=0.422 Sum_probs=137.9
Q ss_pred CCcCcceEEEecCC-----ceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDG-----MKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g-----~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.+... ..||||++..... .....|..|+.+++. +|+||+.+|++.
T Consensus 18 G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~ 97 (283)
T d1mqba_ 18 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALD 97 (283)
T ss_dssp CSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHH
T ss_pred CCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcch
Confidence 56899999987643 4799999865433 233467778877543 689999999998
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---cccc-
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQN- 536 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~~- 536 (639)
+.+......++|.++.+|+.+||+||+||| +.+|+||||||+|||++.++.+||+|||+|+.+...... ....
T Consensus 98 ~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~ 174 (283)
T d1mqba_ 98 KFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGK 174 (283)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------C
T ss_pred hhhhcccccccHHHHHHHHHHHHHhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCC
Confidence 887766667999999999999999999999 678999999999999999999999999999987543211 0000
Q ss_pred --------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 537 --------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 537 --------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
..+.++||| | |++.|..... ....+.+.+.... . .+.+
T Consensus 175 gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~-~~~~~~~~i~~~~------------~------~~~~ 235 (283)
T d1mqba_ 175 IPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL-SNHEVMKAINDGF------------R------LPTP 235 (283)
T ss_dssp CCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHHHHHHHHTTC------------C------CCCC
T ss_pred CCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC-CHHHHHHHHhccC------------C------CCCc
Confidence 112267777 5 5444432211 1111112221110 0 0112
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
.++...+.+|+.+||+.+|++||||.||+++|+++.+.
T Consensus 236 ~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~ 273 (283)
T d1mqba_ 236 MDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273 (283)
T ss_dssp TTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence 23445678899999999999999999999999987653
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.8e-27 Score=232.31 Aligned_cols=200 Identities=22% Similarity=0.351 Sum_probs=141.7
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhccccC-
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKCLYSS- 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~l~~~- 466 (639)
.+||.||++...++..||||++..... ..+.|..|+..++. +||||+++|++...+...
T Consensus 28 G~fg~Vy~~~~~~~~~vAiK~l~~~~~-~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g~l~~~~~~~~ 106 (285)
T d1fmka3 28 GCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGET 106 (285)
T ss_dssp CSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTCBHHHHHSHHH
T ss_pred CCCeEEEEEEECCCCEEEEEEECcccC-CHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCCchhhhhhhcc
Confidence 468999999999888999999975543 34568888877543 799999999999888752
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~---------- 535 (639)
...++|.++.+||.+||+||+||| ..+|+||||||+|||+|.++.+||+|||+|+.+.+..... ..
T Consensus 107 ~~~l~~~~~~~i~~~i~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aP 183 (285)
T d1fmka3 107 GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 183 (285)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccCh
Confidence 245899999999999999999999 5679999999999999999999999999998775433210 00
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|...... ...+..++...... +.+.++...+.
T Consensus 184 E~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~-~~~~~~~i~~~~~~------------------~~~~~~~~~l~ 244 (285)
T d1fmka3 184 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVLDQVERGYRM------------------PCPPECPESLH 244 (285)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHTTCCC------------------CCCTTSCHHHH
T ss_pred HHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC-HHHHHHHHHhcCCC------------------CCCcccCHHHH
Confidence 1122378888 6 66555432111 11122222211100 01122334577
Q ss_pred HHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 602 NLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
+++.+|++.+|++||+|.+|+++|+.+.
T Consensus 245 ~li~~cl~~dP~~Rps~~~i~~~L~~~~ 272 (285)
T d1fmka3 245 DLMCQCWRKEPEERPTFEYLQAFLEDYF 272 (285)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred HHHHHHcccCHhHCcCHHHHHHHHhhhh
Confidence 8999999999999999999999988653
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.1e-26 Score=227.54 Aligned_cols=210 Identities=21% Similarity=0.280 Sum_probs=144.6
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHH--------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMM--------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~--------------------------~~Lv~ey~~~gsL~ 460 (639)
.+||.||++.. .|..||||+++.... ..+..+.+.+ ..+|||||++|+|.
T Consensus 14 G~fg~Vy~~~~-~g~~vAvK~~~~~~~---~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~ 89 (303)
T d1vjya_ 14 GRFGEVWRGKW-RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLF 89 (303)
T ss_dssp CSSSEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHH
T ss_pred CCCeEEEEEEE-CCEEEEEEEECccch---hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHH
Confidence 57899999987 578999999875532 2333333331 12799999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccC-----CCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGY-----STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~-----~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
++++.. .++|.++.+++.++|+||+|+|+.+ .++|+||||||+|||+|+++.+||+|||+++.........
T Consensus 90 ~~l~~~--~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~ 167 (303)
T d1vjya_ 90 DYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDI 167 (303)
T ss_dssp HHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceec
Confidence 999753 5899999999999999999999532 4799999999999999999999999999998775432110
Q ss_pred --cccc---------------------cccccccc--c-------CCCCCCCccCC----------CccchHHHHHhhCC
Q 041082 534 --TQNT---------------------NTCHHRIY--G-------TRRNPQMNFFS----------GEMTLKSWVNDLLP 571 (639)
Q Consensus 534 --~~~~---------------------~~~~~dvy--G-------tg~~p~~~~~~----------~~~~l~~~~~~~~~ 571 (639)
.... .+.++||| | ||..|...... ..............
T Consensus 168 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (303)
T d1vjya_ 168 APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE 247 (303)
T ss_dssp ----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT
T ss_pred cccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhc
Confidence 0000 12267888 6 66554322110 01111111111111
Q ss_pred CCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 572 ISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 572 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.++|.+.. .....+++..+.+++.+||+.+|++||||.||+++|+++.+.
T Consensus 248 ----~~~~p~~~~-----~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~ 298 (303)
T d1vjya_ 248 ----QKLRPNIPN-----RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp ----SCCCCCCCG-----GGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----cccCCCCCc-----ccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence 112222211 112345677889999999999999999999999999998754
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.7e-26 Score=225.66 Aligned_cols=198 Identities=22% Similarity=0.343 Sum_probs=146.2
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccccC
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYSS 466 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~~ 466 (639)
.+||.||++..+++..||||++..... ....|..|+..++. +|+||+++|++..++...
T Consensus 15 G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~ 93 (258)
T d1k2pa_ 15 GQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM 93 (258)
T ss_dssp ETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSG
T ss_pred CCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhcc
Confidence 568999999999888999999876443 24578888887543 689999999999988766
Q ss_pred CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-cc----------
Q 041082 467 NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-TQ---------- 535 (639)
Q Consensus 467 ~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-~~---------- 535 (639)
...++|..+.+++.++|+||+||| ..+|+||||||+||+++.++.+||+|||+|+......... ..
T Consensus 94 ~~~~~~~~~~~i~~qi~~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aP 170 (258)
T d1k2pa_ 94 RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170 (258)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCc
Confidence 667899999999999999999999 5689999999999999999999999999998765433211 00
Q ss_pred -----cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | | |+.|... .+-.+...... .. .....| ..+...+
T Consensus 171 E~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~-----~~~~~~~~~i~-~~-~~~~~p-------------~~~~~~l 230 (258)
T d1k2pa_ 171 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYER-----FTNSETAEHIA-QG-LRLYRP-------------HLASEKV 230 (258)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-----SCHHHHHHHHH-TT-CCCCCC-------------TTCCHHH
T ss_pred HHhcCCCCCcceeecccchhhHhHHhcCCCCCCC-----CCHHHHHHHHH-hC-CCCCCc-------------ccccHHH
Confidence 0112378888 6 5 6766642 12222211111 11 011111 1223457
Q ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 601 FNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
.+++.+||+.+|++||||.||++.|.+|
T Consensus 231 ~~li~~cl~~dP~~RPt~~eil~~L~di 258 (258)
T d1k2pa_ 231 YTIMYSCWHEKADERPTFKILLSNILDV 258 (258)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred HHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence 7899999999999999999999998653
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.7e-26 Score=225.91 Aligned_cols=199 Identities=22% Similarity=0.323 Sum_probs=143.2
Q ss_pred CCcCcceEEEecC---CceeeeEEechhh--hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD---GMKVAVKVFDLQY--ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~---g~~vavK~l~~~~--~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||+|.+.+ +..||||++.... ....+.|..|+.+++. +||||+++|+|.++
T Consensus 18 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g~L~~~ 97 (277)
T d1xbba_ 18 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKY 97 (277)
T ss_dssp CSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHH
T ss_pred CCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCCcHHHH
Confidence 5799999998753 4679999986432 2234567788877543 78999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---ccc---
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQN--- 536 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~~--- 536 (639)
++. ...++|..+.+|+.+||+||+||| +.+|+||||||+|||++.++.+|++|||+|+.+....... ...
T Consensus 98 l~~-~~~l~~~~~~~i~~qi~~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt 173 (277)
T d1xbba_ 98 LQQ-NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWP 173 (277)
T ss_dssp HHH-CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCC
T ss_pred Hhh-ccCCCHHHHHHHHHHHHHHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCC
Confidence 874 345899999999999999999999 5689999999999999999999999999998765432210 000
Q ss_pred ------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 537 ------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 537 ------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
..+.++||| | | |+.|..+. ....+...+... .. .+.+.
T Consensus 174 ~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~--~~~~~~~~i~~~---~~---------------~~~p~ 233 (277)
T d1xbba_ 174 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAMLEKG---ER---------------MGCPA 233 (277)
T ss_dssp GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHHTT---CC---------------CCCCT
T ss_pred ceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC--CHHHHHHHHHcC---CC---------------CCCCc
Confidence 112378888 6 5 77776532 111222222211 00 01112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
.+...+.+|+.+||+.+|++||||.+|+++|+.+-
T Consensus 234 ~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~ 268 (277)
T d1xbba_ 234 GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 268 (277)
T ss_dssp TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence 23345778999999999999999999999998864
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=8.3e-27 Score=234.01 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=141.9
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhhh-hhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYER-AFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~~-~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.+||.||+|... ++..||||+++..... ....|..|+..++. +++||+++|+|
T Consensus 24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L 103 (301)
T d1lufa_ 24 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 103 (301)
T ss_dssp CSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred CCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcH
Confidence 569999999875 3478999998755433 34568888887543 68999999999
Q ss_pred hhccccC-----------------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 460 EKCLYSS-----------------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 460 ~~~l~~~-----------------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
.++++.. ...++|..+.+|+.++|.||+||| +.+|+||||||+|||+|.++.+|
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHrDlKp~NILld~~~~~K 180 (301)
T d1lufa_ 104 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVK 180 (301)
T ss_dssp HHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEE
T ss_pred HHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEeeEEcccceEECCCCcEE
Confidence 9987531 234899999999999999999999 67899999999999999999999
Q ss_pred eccccccccccccCCCc--ccc---------------ccccccccc--c-------CCC-CCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQSF--TQN---------------TNTCHHRIY--G-------TRR-NPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~~--~~~---------------~~~~~~dvy--G-------tg~-~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+|+...+..... +.. ..+.++||| | ||. .|.... ....+...+..
T Consensus 181 l~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~--~~~e~~~~v~~- 257 (301)
T d1lufa_ 181 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM--AHEEVIYYVRD- 257 (301)
T ss_dssp ECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CHHHHHHHHHT-
T ss_pred EccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC--CHHHHHHHHHc-
Confidence 99999998765432210 000 112367777 5 554 343321 11111122211
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
... .+.+..+...+.+|+.+||+.+|++||||.||+++|++|.
T Consensus 258 --~~~---------------~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 258 --GNI---------------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp --TCC---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred --CCC---------------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 110 0112223346788999999999999999999999999875
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.5e-26 Score=226.60 Aligned_cols=202 Identities=20% Similarity=0.295 Sum_probs=129.3
Q ss_pred CCcCcceEEEecC------CceeeeEEechhhh-hhhhhHHHHHHHHH----------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQD------GMKVAVKVFDLQYE-RAFKSFDVACDMMK----------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~~------g~~vavK~l~~~~~-~~~~~f~~e~~~~~----------------------~Lv~ey~~~g 457 (639)
.+||.||++.... ++.||||++..... .....+..+...+. .+||||+++|
T Consensus 24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g 103 (299)
T d1ywna1 24 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 103 (299)
T ss_dssp CSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTC
T ss_pred cCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCC
Confidence 5699999998642 46899999864332 22334444444321 2689999999
Q ss_pred CchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccc
Q 041082 458 SLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGM 522 (639)
Q Consensus 458 sL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgl 522 (639)
+|.++++.. ...++|.++..++.+||+||+||| +.+|+||||||+|||+++++.+||+|||+
T Consensus 104 ~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NILl~~~~~~Kl~DFGl 180 (299)
T d1ywna1 104 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGL 180 (299)
T ss_dssp BHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECC---
T ss_pred cHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccceeECCCCcEEEccCcc
Confidence 999988642 234899999999999999999999 66899999999999999999999999999
Q ss_pred cccccccCCC--ccccc---------------cccccccc--c-------CCCC-CCCccCCCccchHHHHHhhCCCCcc
Q 041082 523 AKLLLKEDQS--FTQNT---------------NTCHHRIY--G-------TRRN-PQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 523 a~~~~~~~~~--~~~~~---------------~~~~~dvy--G-------tg~~-p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
|+........ ..... .+.++||| | |+.. |.... .....+...+.....
T Consensus 181 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~-~~~~~~~~~~~~~~~---- 255 (299)
T d1ywna1 181 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV-KIDEEFCRRLKEGTR---- 255 (299)
T ss_dssp ---CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-CCSHHHHHHHHHTCC----
T ss_pred hhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcCCC----
Confidence 9876543221 01111 12267887 6 5543 43321 111111111111100
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+.+..+...+.+++.+|++.+|++||||.||+++|+++.+
T Consensus 256 --------------~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq 296 (299)
T d1ywna1 256 --------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 296 (299)
T ss_dssp --------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --------------CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 01111223357789999999999999999999999998854
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=6.5e-24 Score=213.60 Aligned_cols=240 Identities=23% Similarity=0.306 Sum_probs=177.6
Q ss_pred CcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEec
Q 041082 52 YRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 52 ~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
..++.|+|++|.++...+.+|.++++|++|++++|.+....|..|.+++.|+.|++++|++.. +|..+ ...|+.|++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~ 107 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV 107 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence 468999999999997666789999999999999999998889999999999999999999985 45433 367899999
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCC--------CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCc
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV--------QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFF 203 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 203 (639)
.+|.+.+..+..+.....++.++...|..... .+++|+.+++++|+++. +|..+ +++|+.|++++|...
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKIT 184 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCC
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCC
Confidence 99999987777788888888888888765431 24566667777666653 33322 456666666666666
Q ss_pred ccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCC
Q 041082 204 DLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 204 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 283 (639)
+..+..|..++.+++|++++|.+++ ..+..+..+++|++|+|++
T Consensus 185 ~~~~~~~~~~~~l~~L~~s~n~l~~------------------------------------~~~~~~~~l~~L~~L~L~~ 228 (305)
T d1xkua_ 185 KVDAASLKGLNNLAKLGLSFNSISA------------------------------------VDNGSLANTPHLRELHLNN 228 (305)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCE------------------------------------ECTTTGGGSTTCCEEECCS
T ss_pred CCChhHhhccccccccccccccccc------------------------------------cccccccccccceeeeccc
Confidence 6666666666666666666665543 3345566778889999999
Q ss_pred CCCCccccccccCCcCCcEEEccCCcCCCCCchhhc------CCCCCcEEECCCCcC
Q 041082 284 NKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFC------RLASLYELDLSGNKL 334 (639)
Q Consensus 284 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~------~l~~L~~L~Ls~N~l 334 (639)
|+|+ .+|.++..+++|++|++++|+|+......|. .+.+|+.|+|++|.+
T Consensus 229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 9887 4677888889999999999988865444443 233444444444443
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.8e-26 Score=228.37 Aligned_cols=207 Identities=20% Similarity=0.334 Sum_probs=145.7
Q ss_pred CCcCcceEEEec------CCceeeeEEechhh-hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQY-ERAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~-~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.+||.||+|... .+..||||+++... ......|..|+.+++. +||||+++|+|
T Consensus 31 G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l 110 (308)
T d1p4oa_ 31 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDL 110 (308)
T ss_dssp CSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred CCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCH
Confidence 569999999874 25789999986433 2333467788877543 68999999999
Q ss_pred hhcccc---------CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccC
Q 041082 460 EKCLYS---------SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKED 530 (639)
Q Consensus 460 ~~~l~~---------~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~ 530 (639)
.++++. ....++|..+.+|+.++|+||.||| ..+|+||||||+|||+|+++.+||+|||+|+.+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~ 187 (308)
T d1p4oa_ 111 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 187 (308)
T ss_dssp HHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGG
T ss_pred HHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEEEeecccceeccCCc
Confidence 998764 1234799999999999999999999 5689999999999999999999999999999775443
Q ss_pred CCcc--c---------------cccccccccc--c-------CCC-CCCCccCCCccchHHHHHhhCCCCcceeeecccc
Q 041082 531 QSFT--Q---------------NTNTCHHRIY--G-------TRR-NPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLL 583 (639)
Q Consensus 531 ~~~~--~---------------~~~~~~~dvy--G-------tg~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~ 583 (639)
.... . ...+.++||| | ||+ .|.. +....++.........
T Consensus 188 ~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~-----~~~~~~~~~~i~~~~~--------- 253 (308)
T d1p4oa_ 188 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ-----GLSNEQVLRFVMEGGL--------- 253 (308)
T ss_dssp CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT-----TSCHHHHHHHHHTTCC---------
T ss_pred ceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC-----CCCHHHHHHHHHhCCC---------
Confidence 2110 0 0112256777 5 553 3332 2233333222211111
Q ss_pred ccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHHHHHhh
Q 041082 584 SMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDLLLKNV 636 (639)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~~~~~~ 636 (639)
.+.+..+...+.+++.+||+.+|++||||.||+++|++..+...+.+
T Consensus 254 ------~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~~ 300 (308)
T d1p4oa_ 254 ------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREV 300 (308)
T ss_dssp ------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHHH
T ss_pred ------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcCC
Confidence 11122334468889999999999999999999999998765544443
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4e-25 Score=217.91 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=138.0
Q ss_pred CCcCcceEEEecC--C--ceeeeEEechhh---hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARIQD--G--MKVAVKVFDLQY---ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l~~--g--~~vavK~l~~~~---~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.... + ..||||++.... ....+.|..|+.+++. +|+||+++|++.
T Consensus 19 G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~lv~e~~~~~~l~ 98 (273)
T d1u46a_ 19 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLL 98 (273)
T ss_dssp ---CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTCBHH
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchheeeeeecCcchh
Confidence 5699999998642 2 478999886432 2334677888877543 689999999999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc--
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ-- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~-- 535 (639)
+.+......++|..+.+++.++|+||.||| +.+|+||||||+||+++.++.+||+|||+++.+....... ..
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~ 175 (273)
T d1u46a_ 99 DRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRK 175 (273)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccc
Confidence 887765567999999999999999999999 5689999999999999999999999999999875432210 00
Q ss_pred -------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 -------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 -------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | | |+.|..+. ....+..++. ..... .+.
T Consensus 176 ~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~--~~~~~~~~i~---~~~~~--------------~~~ 236 (273)
T d1u46a_ 176 VPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL--NGSQILHKID---KEGER--------------LPR 236 (273)
T ss_dssp CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHHHHH---TSCCC--------------CCC
T ss_pred cCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc--CHHHHHHHHH---hCCCC--------------CCC
Confidence 0112268998 6 6 77776531 1122222221 11100 001
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKI 628 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~ 628 (639)
+..+...+.+++..||+.+|++||||.||.+.|++.
T Consensus 237 ~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~ 272 (273)
T d1u46a_ 237 PEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272 (273)
T ss_dssp CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 112233577899999999999999999999998865
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.3e-26 Score=225.19 Aligned_cols=198 Identities=25% Similarity=0.342 Sum_probs=139.9
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... |..||||+++.+. ..+.|..|++.++ .+|+||+++|+|.++++.
T Consensus 18 G~fg~Vy~~~~~-~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~ 94 (262)
T d1byga_ 18 GEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS 94 (262)
T ss_dssp CSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHH
T ss_pred CCCeEEEEEEEC-CeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHh
Confidence 568999999985 6789999986442 3456778887743 379999999999999875
Q ss_pred C-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c--------
Q 041082 466 S-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T-------- 534 (639)
Q Consensus 466 ~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~-------- 534 (639)
. ...++|..+.+|+.+||.||+||| +.+|+||||||+||+++.++.+|++|||+++......... +
T Consensus 95 ~~~~~l~~~~~~~i~~~i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~ 171 (262)
T d1byga_ 95 RGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA 171 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHH
Confidence 3 235899999999999999999999 6789999999999999999999999999999765433211 0
Q ss_pred --ccccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHHH
Q 041082 535 --QNTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFN 602 (639)
Q Consensus 535 --~~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~ 602 (639)
....+.++||| | | |+.|... .....+..++...... +.+..+...+.+
T Consensus 172 l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~--~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~ 231 (262)
T d1byga_ 172 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPRVEKGYKM------------------DAPDGCPPAVYE 231 (262)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT--SCGGGHHHHHTTTCCC------------------CCCTTCCHHHHH
T ss_pred HhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHcCCCC------------------CCCccCCHHHHH
Confidence 01223478888 6 6 4555432 1233444444321100 011122235678
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 603 LAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 603 l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
++.+|++.+|++||||.||+++|++++.
T Consensus 232 li~~cl~~dP~~Rps~~~l~~~L~~i~~ 259 (262)
T d1byga_ 232 VMKNCWHLDAAMRPSFLQLREQLEHIKT 259 (262)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence 8899999999999999999999998864
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.2e-25 Score=223.10 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=137.5
Q ss_pred CCcCcceEEEecCC------ceeeeEEechhh-hhhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQDG------MKVAVKVFDLQY-ERAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~~g------~~vavK~l~~~~-~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.+||.||++..... ..||+|.+.... ......+..|+..+. .+||||+++|+
T Consensus 48 G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~ 127 (325)
T d1rjba_ 48 GAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGD 127 (325)
T ss_dssp CSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCB
T ss_pred CCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCc
Confidence 56999999987532 368999875432 223345666666543 26899999999
Q ss_pred chhccccCC----------------------ccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCccee
Q 041082 459 LEKCLYSSN----------------------YILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAH 516 (639)
Q Consensus 459 L~~~l~~~~----------------------~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~ 516 (639)
|.++++... ..++|..+..|+.+||+||+||| +.+|+||||||+||+++.++.+|
T Consensus 128 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp~Nill~~~~~~K 204 (325)
T d1rjba_ 128 LLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVK 204 (325)
T ss_dssp HHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTTEEE
T ss_pred HHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCchhccccccCCeEE
Confidence 999986522 24899999999999999999999 56899999999999999999999
Q ss_pred eccccccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhh
Q 041082 517 LSDFGMAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDL 569 (639)
Q Consensus 517 i~dfgla~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~ 569 (639)
|+|||+|+......... .. ...+.++||| | | |+.|..+. .....+...+...
T Consensus 205 l~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~-~~~~~~~~~~~~~ 283 (325)
T d1rjba_ 205 ICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI-PVDANFYKLIQNG 283 (325)
T ss_dssp ECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC-CCSHHHHHHHHTT
T ss_pred EeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC-CHHHHHHHHHhcC
Confidence 99999998765443210 00 0112278888 6 6 77776532 1122233333221
Q ss_pred CCCCcceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 041082 570 LPISVMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLL 626 (639)
Q Consensus 570 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~ 626 (639)
..- +.+..+...+.+++.+|++.+|++||||.||+++|.
T Consensus 284 ~~~------------------~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 284 FKM------------------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp CCC------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCC------------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 110 111223345778999999999999999999999985
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6e-24 Score=211.52 Aligned_cols=99 Identities=22% Similarity=0.202 Sum_probs=60.2
Q ss_pred EeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc-cccC
Q 041082 58 NISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ-NNFL 136 (639)
Q Consensus 58 ~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-~N~l 136 (639)
+.++.+++ .+|..+. +++++|+|++|+|++..+..|.++++|+.|++++|++....+..+.++..++.+... .|.+
T Consensus 17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 44555665 4566554 467888888888875555567777777777777777766666666666666666543 4445
Q ss_pred ccccCccccCCCCCCEEecCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNN 159 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~ 159 (639)
+...+..|.++++|++|++++|.
T Consensus 94 ~~l~~~~~~~l~~L~~L~l~~n~ 116 (284)
T d1ozna_ 94 RSVDPATFHGLGRLHTLHLDRCG 116 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccchhhcccccCCEEecCCcc
Confidence 44445555555444444444443
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-24 Score=220.24 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=143.2
Q ss_pred CCcCcceEEEec-CCc----eeeeEEechhh-hhhhhhHHHHHHHHHh-------------------hhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGM----KVAVKVFDLQY-ERAFKSFDVACDMMKK-------------------LVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~----~vavK~l~~~~-~~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~ 461 (639)
.+||.||++... .|. .||+|++.... ....+.|..|+.+++. ++++|+.+|+|.+
T Consensus 20 G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v~e~~~~~~l~~ 99 (317)
T d1xkka_ 20 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLD 99 (317)
T ss_dssp CSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTCBHHH
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEEEEeccCCcccc
Confidence 569999999864 343 58888875432 3345678888888653 5789999999998
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--ccc---
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQN--- 536 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~~--- 536 (639)
.+......++|..+.+|+.+||+||+||| ..+|+||||||+||+++.++.+||+|||+|+.+....... ...
T Consensus 100 ~~~~~~~~~~~~~~~~i~~qi~~gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt 176 (317)
T d1xkka_ 100 YVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 176 (317)
T ss_dssp HHHHTSSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CC
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccC
Confidence 88776677999999999999999999999 5689999999999999999999999999999875433210 000
Q ss_pred ------------ccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchH
Q 041082 537 ------------TNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKK 594 (639)
Q Consensus 537 ------------~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 594 (639)
..+.++||| | | |+.|.+.. ....+...+..... .+.++
T Consensus 177 ~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~--~~~~~~~~i~~~~~------------------~~~p~ 236 (317)
T d1xkka_ 177 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGER------------------LPQPP 236 (317)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS--CGGGHHHHHHHTCC------------------CCCCT
T ss_pred ccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCc
Confidence 112378888 6 5 56665432 11222222221110 01112
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 595 QCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 595 ~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+...+.+++.+|++.+|++||||.||++.|+.+..
T Consensus 237 ~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~ 272 (317)
T d1xkka_ 237 ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272 (317)
T ss_dssp TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence 334467789999999999999999999999988754
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.9e-25 Score=215.58 Aligned_cols=202 Identities=20% Similarity=0.311 Sum_probs=137.8
Q ss_pred CCcCcceEEEecC----CceeeeEEechhhh-hhhhhHHHHHHHHHh-------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQD----GMKVAVKVFDLQYE-RAFKSFDVACDMMKK-------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~~----g~~vavK~l~~~~~-~~~~~f~~e~~~~~~-------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.... +..+|+|.++.... .....|..|+..++. +|+||+++|++.++
T Consensus 18 G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~E~~~~g~l~~~ 97 (273)
T d1mp8a_ 18 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 97 (273)
T ss_dssp CSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEEECCTTEEHHHH
T ss_pred CCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEEEeccCCcHHhh
Confidence 5699999998643 35688888864332 334567788877543 68999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-ccc------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FTQ------ 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~~------ 535 (639)
+......++|..+..++.++|+||+||| +.+|+||||||+||+++.++.+||+|||+|+........ ...
T Consensus 98 ~~~~~~~l~~~~~~~~~~qi~~gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~ 174 (273)
T d1mp8a_ 98 LQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK 174 (273)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGG
T ss_pred hhccCCCCCHHHHHHHHHHHHHHhhhhc---ccCeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcc
Confidence 7766667999999999999999999999 678999999999999999999999999999876543211 000
Q ss_pred ---------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ---------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ---------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | | |+.|..+. ....+...+..... .+.+..+
T Consensus 175 y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~--~~~~~~~~i~~~~~------------------~~~~~~~ 234 (273)
T d1mp8a_ 175 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGER------------------LPMPPNC 234 (273)
T ss_dssp GCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCC------------------CCCCTTC
T ss_pred cchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCC------------------CCCCCCC
Confidence 0112267888 6 5 67676532 12223332221110 0011223
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
...+.+++.+|++.+|++||||.||++.|+.+.+.
T Consensus 235 ~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~ 269 (273)
T d1mp8a_ 235 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 269 (273)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999988655
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.1e-25 Score=215.46 Aligned_cols=195 Identities=20% Similarity=0.251 Sum_probs=135.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++.. .+|..+|||+++.... ...+.+..|+.+++. +||||+++|+|.+++.
T Consensus 16 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~ 95 (271)
T d1nvra_ 16 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE 95 (271)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB
T ss_pred CcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHh
Confidence 46899999986 4689999999875432 234567788877543 7899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--cccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQN------ 536 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~~------ 536 (639)
. ...+++.....++.+++.||+||| +.+|+||||||+|||+++++.+||+|||+|+.+...... ....
T Consensus 96 ~-~~~l~e~~~~~i~~qi~~al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y 171 (271)
T d1nvra_ 96 P-DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPY 171 (271)
T ss_dssp T-TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGG
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCc
Confidence 4 346899999999999999999999 567999999999999999999999999999976533211 0000
Q ss_pred ----------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 537 ----------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 537 ----------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
..+.++||| | ||+.|.............+... .... . ......
T Consensus 172 ~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~---~~~~---~------------~~~~~s 233 (271)
T d1nvra_ 172 VAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK---KTYL---N------------PWKKID 233 (271)
T ss_dssp SCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTT---CTTS---T------------TGGGSC
T ss_pred cCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcC---CCCC---C------------ccccCC
Confidence 112367888 7 8888875422111111111110 0000 0 001111
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.++..+|++.+|++|||+.||++
T Consensus 234 ~~~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 234 SAPLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 24557888999999999999999864
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.1e-24 Score=211.46 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=98.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeecc-CCcCCCCCCccccCCCCCcEEec
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFN-NNTLFGEIPEELGNLAELETLWL 131 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L 131 (639)
.++.|+|++|.++...+..|.++++|++|++++|.+.+..+..+.++..+..+... .|.+....|..|.++++|++|+|
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 45678888888876656677888888888888888877777777777777777654 45565666777788888888888
Q ss_pred ccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccC
Q 041082 132 QNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFG 211 (639)
Q Consensus 132 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 211 (639)
++|.+....+..+...++|+.+++++|.|+.+ .+..|..+++|+.|++++|.+.++.+..|.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i------------------~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~ 174 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQAL------------------PDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------CTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCcccccccccccchhcccchhhhcccccccc------------------ChhHhccccchhhcccccCcccccchhhhc
Confidence 88887766666666666666666665555432 233334444444444444444444444444
Q ss_pred CCCCCCEEEccCCCCC
Q 041082 212 NLINLKRLNLYDNYLT 227 (639)
Q Consensus 212 ~l~~L~~L~Ls~N~l~ 227 (639)
++++|+++++++|+++
T Consensus 175 ~l~~L~~l~l~~N~l~ 190 (284)
T d1ozna_ 175 GLHSLDRLLLHQNRVA 190 (284)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhcccc
Confidence 4444444444444433
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-24 Score=218.44 Aligned_cols=202 Identities=27% Similarity=0.403 Sum_probs=140.0
Q ss_pred CCcCcceEEEecC-Cc--eeeeEEechh-hhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQD-GM--KVAVKVFDLQ-YERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~~-g~--~vavK~l~~~-~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++...+ |. .||||++... .....+.|..|++.+. .+|+||+++|+|.+
T Consensus 21 G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~ 100 (309)
T d1fvra_ 21 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLD 100 (309)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred CCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHH
Confidence 4689999998764 33 5788887532 2334567888887753 26899999999999
Q ss_pred ccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccc
Q 041082 462 CLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLL 526 (639)
Q Consensus 462 ~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~ 526 (639)
+++.. ...++|.++.+++.|||+||.|+| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~ 177 (309)
T d1fvra_ 101 FLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ 177 (309)
T ss_dssp HHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESS
T ss_pred HHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCceEEccccccccc
Confidence 98642 356899999999999999999999 678999999999999999999999999999876
Q ss_pred cccCCCc----cc----------cccccccccc--c-------CCCC-CCCccCCCccchHHHHHhhCCCCcceeeeccc
Q 041082 527 LKEDQSF----TQ----------NTNTCHHRIY--G-------TRRN-PQMNFFSGEMTLKSWVNDLLPISVMEVVDVNL 582 (639)
Q Consensus 527 ~~~~~~~----~~----------~~~~~~~dvy--G-------tg~~-p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l 582 (639)
....... +. ...+.++||| | ||.. |.. +.+..+......... .+
T Consensus 178 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~-----~~~~~~~~~~i~~~~-----~~-- 245 (309)
T d1fvra_ 178 EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYC-----GMTCAELYEKLPQGY-----RL-- 245 (309)
T ss_dssp CEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTT-----TCCHHHHHHHGGGTC-----CC--
T ss_pred cccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCC-----CCCHHHHHHHHHhcC-----CC--
Confidence 5432210 00 1112378888 6 6544 332 122222221111100 00
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRDL 631 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~~ 631 (639)
+.+..+...+.+++.+|++.+|++||||.||++.|+++.+.
T Consensus 246 --------~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 286 (309)
T d1fvra_ 246 --------EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 286 (309)
T ss_dssp --------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred --------CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 11122334577888999999999999999999999988654
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.7e-24 Score=213.67 Aligned_cols=194 Identities=25% Similarity=0.319 Sum_probs=139.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.++|.||++.. .+|..+|||++........+.+..|+.+++. +||||+++|+|.+++..
T Consensus 31 G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~ 110 (293)
T d1yhwa1 31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE 110 (293)
T ss_dssp SSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhc
Confidence 56899999985 5689999999987665555677888887553 78999999999988764
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccc---------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN--------- 536 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~--------- 536 (639)
..++..+...|+.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+..+.......
T Consensus 111 --~~l~~~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aP 185 (293)
T d1yhwa1 111 --TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 185 (293)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccCh
Confidence 35899999999999999999999 5689999999999999999999999999998775433211111
Q ss_pred ------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 537 ------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 537 ------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
..+.++||| | ||+.|..+.- ....+...+....+. + ..+......+.
T Consensus 186 E~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~-~~~~~~~~~~~~~~~---------~--------~~~~~~s~~~~ 247 (293)
T d1yhwa1 186 EVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN-PLRALYLIATNGTPE---------L--------QNPEKLSAIFR 247 (293)
T ss_dssp HHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-HHHHHHHHHHHCSCC---------C--------SSGGGSCHHHH
T ss_pred hhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCC-HHHHHHHHHhCCCCC---------C--------CCcccCCHHHH
Confidence 112378888 6 8888875311 001111111111110 0 00111223466
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 041082 602 NLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
++..+|++.+|++|||+.|+++
T Consensus 248 ~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 248 DFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp HHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHccCChhHCcCHHHHhc
Confidence 7888999999999999999975
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.6e-25 Score=215.74 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=129.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++.. .+|..+|+|.++.... .....+..|+++++ .+||||+++|+|.+
T Consensus 15 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~ 94 (269)
T d2java1 15 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLAS 94 (269)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHH
Confidence 56899999986 4688999999875432 22345667777732 26899999999999
Q ss_pred cccc---CCccCCHHHHHHHHHHHHHhhhhhhccC--CCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccc
Q 041082 462 CLYS---SNYILDIFQRLNIMIDVALALEYLHFGY--STPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN 536 (639)
Q Consensus 462 ~l~~---~~~~l~~~~~~~i~~~ia~~l~~lh~~~--~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~ 536 (639)
++.. ....+++.....++.++|.||+|||+.. ..+|+||||||+|||++.++.+||+|||+|+.+..+.......
T Consensus 95 ~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~ 174 (269)
T d2java1 95 VITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAF 174 (269)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC----------
T ss_pred HHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccC
Confidence 8864 2356899999999999999999999643 3569999999999999999999999999999875433211000
Q ss_pred ---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 537 ---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 537 ---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
..+.++||| | ||+.|.... ....+..-+.. .... .+
T Consensus 175 ~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~--~~~~~~~~i~~---~~~~-----~~---------- 234 (269)
T d2java1 175 VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--SQKELAGKIRE---GKFR-----RI---------- 234 (269)
T ss_dssp -CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHH---TCCC-----CC----------
T ss_pred CCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC--CHHHHHHHHHc---CCCC-----CC----------
Confidence 112378888 7 888887531 11111111111 0000 00
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+......+.+++.+|++.+|++|||+.|+++
T Consensus 235 ~~~~s~~l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 235 PYRYSDELNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 0111224667888999999999999999875
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=9.5e-25 Score=216.70 Aligned_cols=196 Identities=21% Similarity=0.326 Sum_probs=140.7
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... .+..+|+|+++.......+.+..|+++++. +||||+++|+|.+++..
T Consensus 23 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~ 102 (288)
T d2jfla1 23 GAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLE 102 (288)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHH
T ss_pred CCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHh
Confidence 468999999864 688999999987666666788888888553 78999999999998765
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCC-----C------cc
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQ-----S------FT 534 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~-----~------~~ 534 (639)
....+++.+...++.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+....... . .+
T Consensus 103 ~~~~l~e~~~~~i~~qi~~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~AP 179 (288)
T d2jfla1 103 LERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAP 179 (288)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCH
Confidence 4556999999999999999999999 56799999999999999999999999999976543210 0 00
Q ss_pred c---------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 535 Q---------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 535 ~---------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
. ...+.++||| | ||+.|..+. ....+..-+...-+ +.+ ..+...
T Consensus 180 E~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~--~~~~~~~~i~~~~~--------~~~--------~~~~~~ 241 (288)
T d2jfla1 180 EVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL--NPMRVLLKIAKSEP--------PTL--------AQPSRW 241 (288)
T ss_dssp HHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS--CGGGHHHHHHHSCC--------CCC--------SSGGGS
T ss_pred HHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHcCCC--------CCC--------CccccC
Confidence 0 0012367888 6 788776532 11111111111000 000 011122
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.+++.+|++.+|++|||+.|+++
T Consensus 242 s~~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 242 SSNFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 235667888999999999999999976
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.1e-24 Score=216.06 Aligned_cols=203 Identities=19% Similarity=0.293 Sum_probs=140.7
Q ss_pred CCcCcceEEEec------CCceeeeEEechhhh-hhhhhHHHHHHHHH---------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARIQ------DGMKVAVKVFDLQYE-RAFKSFDVACDMMK---------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l~------~g~~vavK~l~~~~~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~gs 458 (639)
.+||.||++.+. .+..+|||++..... .....|..|+.+++ .+||||+++|+
T Consensus 34 G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~ 113 (311)
T d1t46a_ 34 GAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGD 113 (311)
T ss_dssp CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEE
T ss_pred cCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCC
Confidence 468999999863 357899999875432 22345666665543 26899999999
Q ss_pred chhccccC-----------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 459 LEKCLYSS-----------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 459 L~~~l~~~-----------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|.++++.. ...++|..+.+++.+||+||+||| ..+++||||||+||+++.++.+|++|||
T Consensus 114 l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~~~~~~~ki~DfG 190 (311)
T d1t46a_ 114 LLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFG 190 (311)
T ss_dssp HHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCG
T ss_pred HHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccccccccccccCcccccccc
Confidence 99988642 125899999999999999999999 6679999999999999999999999999
Q ss_pred ccccccccCCCc--ccc---------------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcc
Q 041082 522 MAKLLLKEDQSF--TQN---------------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVM 575 (639)
Q Consensus 522 la~~~~~~~~~~--~~~---------------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~ 575 (639)
+++......... ... ..+.++||| | |++.|..........+...+....+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~--- 267 (311)
T d1t46a_ 191 LARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM--- 267 (311)
T ss_dssp GGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCC---
T ss_pred hheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC---
Confidence 999775433210 000 112267777 5 54444332222222223333221111
Q ss_pred eeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 576 EVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 576 ~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
..+..+...+.+|+.+|++.+|++||||.||+++|+++..
T Consensus 268 ---------------~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~ 307 (311)
T d1t46a_ 268 ---------------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (311)
T ss_dssp ---------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---------------CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence 0111223457789999999999999999999999987643
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.6e-24 Score=211.89 Aligned_cols=201 Identities=25% Similarity=0.343 Sum_probs=138.0
Q ss_pred CCcCcceEEEecC--------CceeeeEEechhhh-hhhhhHHHHHHHHH---------------------hhhhhcCCC
Q 041082 407 SGFGSIYKARIQD--------GMKVAVKVFDLQYE-RAFKSFDVACDMMK---------------------KLVLEYMPH 456 (639)
Q Consensus 407 ~g~g~vy~~~l~~--------g~~vavK~l~~~~~-~~~~~f~~e~~~~~---------------------~Lv~ey~~~ 456 (639)
.+||.||++.... +..||||++..... .....+..|...+. .+||||+++
T Consensus 24 G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~ 103 (299)
T d1fgka_ 24 GAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 103 (299)
T ss_dssp ----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred cCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCC
Confidence 5689999998532 24799999865443 23355555655532 268999999
Q ss_pred CCchhccccC---------------CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccc
Q 041082 457 GSLEKCLYSS---------------NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFG 521 (639)
Q Consensus 457 gsL~~~l~~~---------------~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfg 521 (639)
|+|.+++... ...++|.++.+++.++|+||+||| +.+|+||||||+|||++.++.+||+|||
T Consensus 104 g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl~~~~~~kl~dfg 180 (299)
T d1fgka_ 104 GNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFG 180 (299)
T ss_dssp CBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSTT
T ss_pred CcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceeecCCCCeEeccch
Confidence 9999998642 235899999999999999999999 6789999999999999999999999999
Q ss_pred ccccccccCCCc--cc---------------cccccccccc--c-------C-CCCCCCccCCCccchHHHHHhhCCCCc
Q 041082 522 MAKLLLKEDQSF--TQ---------------NTNTCHHRIY--G-------T-RRNPQMNFFSGEMTLKSWVNDLLPISV 574 (639)
Q Consensus 522 la~~~~~~~~~~--~~---------------~~~~~~~dvy--G-------t-g~~p~~~~~~~~~~l~~~~~~~~~~~~ 574 (639)
+++......... .. ...+.++||| | | |+.|..+. ....+.+++.....-
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~--~~~~~~~~i~~~~~~-- 256 (299)
T d1fgka_ 181 LARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--PVEELFKLLKEGHRM-- 256 (299)
T ss_dssp CCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHTTCCC--
T ss_pred hhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC--CHHHHHHHHHcCCCC--
Confidence 999776543210 00 0112278888 6 5 55555421 111222222211100
Q ss_pred ceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 575 MEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 575 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
+.+..+...+.+++.+|++.+|++||||.||+++|+++..
T Consensus 257 ----------------~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a 296 (299)
T d1fgka_ 257 ----------------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA 296 (299)
T ss_dssp ----------------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----------------CCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence 0011122357789999999999999999999999998853
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-23 Score=205.35 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=136.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~------------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .+..+|+|.+.... ......|..|+++++ .+||||+++|+|
T Consensus 20 G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L 99 (270)
T d1t4ha_ 20 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTL 99 (270)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBH
T ss_pred CcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcH
Confidence 568999999865 57899999986543 223456777887743 268999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec-CCcceeeccccccccccccCCC---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG-NNMVAHLSDFGMAKLLLKEDQS---FT- 534 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~-~~~~~~i~dfgla~~~~~~~~~---~~- 534 (639)
.+++... ..+++.....++.++++||+|||+. .++|+||||||.|||++ +++.+||+|||+|+........ .+
T Consensus 100 ~~~l~~~-~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~ 177 (270)
T d1t4ha_ 100 KTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTP 177 (270)
T ss_dssp HHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSC
T ss_pred HHHHhcc-ccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCc
Confidence 9988642 4589999999999999999999943 34599999999999997 5789999999999875433211 00
Q ss_pred -----c---cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 535 -----Q---NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 535 -----~---~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
. ...+.++||| | ||+.|..+. ....+..+..........++ ..+.
T Consensus 178 ~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~----~~~~~~~~~i~~~~~~~~~~--------------~~~~ 239 (270)
T d1t4ha_ 178 EFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTSGVKPASFD--------------KVAI 239 (270)
T ss_dssp CCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHHHHTTTCCCGGGG--------------GCCC
T ss_pred cccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCc----ccHHHHHHHHHcCCCCcccC--------------ccCC
Confidence 0 0112378888 6 888886431 12222111111110000010 1112
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 598 SFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.+++.+|++.+|++|||+.|+++
T Consensus 240 ~~~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 240 PEVKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCCHhHCcCHHHHhC
Confidence 24667889999999999999999975
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=3e-23 Score=207.84 Aligned_cols=194 Identities=22% Similarity=0.329 Sum_probs=135.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. .+|..+|||++.... ....+.+..|+.+++. +|+||+++|++..+
T Consensus 26 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~ 105 (309)
T d1u5ra_ 26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLL 105 (309)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHH
Confidence 56899999985 568899999986543 2334567778877542 78999999988665
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC-cc------c
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-FT------Q 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-~~------~ 535 (639)
+.. ...+++.....|+.+|+.||+||| ..+|+||||||+|||++.++.+||+|||+|+........ ++ .
T Consensus 106 ~~~-~~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE 181 (309)
T d1u5ra_ 106 EVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPE 181 (309)
T ss_dssp HHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSBCCCCSCGGGCCHH
T ss_pred HHh-CCCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEECCCCCEEEeecccccccCCCCccccCccccCHH
Confidence 443 346899999999999999999999 668999999999999999999999999999876543321 11 0
Q ss_pred -------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHH
Q 041082 536 -------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSF 599 (639)
Q Consensus 536 -------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 599 (639)
...+.++||| | ||+.|..+. .....+. ...... .+.+.. ..+...
T Consensus 182 ~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~----~~~~~~~-~i~~~~-----~~~~~~---------~~~s~~ 242 (309)
T d1u5ra_ 182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM----NAMSALY-HIAQNE-----SPALQS---------GHWSEY 242 (309)
T ss_dssp HHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS----CHHHHHH-HHHHSC-----CCCCSC---------TTSCHH
T ss_pred HHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC----CHHHHHH-HHHhCC-----CCCCCC---------CCCCHH
Confidence 0123367888 6 788776431 1111111 111000 000000 111234
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 041082 600 VFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 600 ~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+.+++.+|++.+|++|||+.|+++
T Consensus 243 ~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 243 FRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHCcCChhHCcCHHHHHh
Confidence 667888999999999999999975
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.88 E-value=2.2e-23 Score=212.41 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=140.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.. ..|..+|||++..........+..|+.+++. +||||+++|+|.+++..
T Consensus 37 G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~ 116 (350)
T d1koaa2 37 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVAD 116 (350)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTC
T ss_pred CcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHh
Confidence 46899999986 4689999999976555445667777777543 78999999999999876
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
....+++.....|+.+|+.||+||| +.+|+||||||+|||++. ++.+||+|||+|+.+.......+.
T Consensus 117 ~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~a 193 (350)
T d1koaa2 117 EHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA 193 (350)
T ss_dssp TTSCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccC
Confidence 5556999999999999999999999 678999999999999964 678999999999987654321100
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|... .+..+.+........ .+++... ......+
T Consensus 194 PEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~-----~~~~~~~~~i~~~~~--~~~~~~~----------~~~s~~~ 256 (350)
T d1koaa2 194 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG-----ENDDETLRNVKSCDW--NMDDSAF----------SGISEDG 256 (350)
T ss_dssp HHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHTCC--CSCCGGG----------GGCCHHH
T ss_pred HHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCC-----CCHHHHHHHHHhCCC--CCCcccc----------cCCCHHH
Confidence 0112378998 7 88888753 122222221111100 0011100 1112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.++..+|++.+|++|||+.|+++
T Consensus 257 ~~li~~~L~~dP~~R~t~~eil~ 279 (350)
T d1koaa2 257 KDFIRKLLLADPNTRMTIHQALE 279 (350)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67888999999999999999986
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.9e-24 Score=207.06 Aligned_cols=192 Identities=22% Similarity=0.291 Sum_probs=136.9
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++... ++..+|+|++.... ......+..|+.+++. +||||+++|+|.++
T Consensus 17 G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~ 96 (263)
T d2j4za1 17 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRE 96 (263)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHH
Confidence 468999999874 57899999986443 2234566777777542 78999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ---- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~---- 535 (639)
+... ..+++.....|+.++++||+||| +.+|+||||||+|||++.++.+||+|||+|+......... +.
T Consensus 97 l~~~-~~l~e~~~~~i~~qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~A 172 (263)
T d2j4za1 97 LQKL-SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLP 172 (263)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCC
T ss_pred Hhhc-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccC
Confidence 8742 35899999999999999999999 6689999999999999999999999999998765433210 00
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|... .+..+......... +.+ +......+
T Consensus 173 PE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~-----~~~~~~~~~i~~~~------~~~----------p~~~s~~~ 231 (263)
T d2j4za1 173 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA-----NTYQETYKRISRVE------FTF----------PDFVTEGA 231 (263)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC-----SSHHHHHHHHHTTC------CCC----------CTTSCHHH
T ss_pred HHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCC-----CCHHHHHHHHHcCC------CCC----------CccCCHHH
Confidence 0112377888 6 78887652 11111111111110 000 01112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.++..+|++.+|++|||+.||++
T Consensus 232 ~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 232 RDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCCHhHCcCHHHHHc
Confidence 67888999999999999999975
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.87 E-value=2.2e-23 Score=212.59 Aligned_cols=197 Identities=16% Similarity=0.251 Sum_probs=140.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++.- ..|..+|||++..........+..|+.+++. +||||+++|+|.+.+..
T Consensus 40 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~ 119 (352)
T d1koba_ 40 GAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAA 119 (352)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTC
T ss_pred CCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHh
Confidence 56899999985 4689999999876554444566778777542 79999999999988776
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec--CCcceeeccccccccccccCCCccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG--NNMVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~--~~~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
....+++.....|+.+|+.||+||| ..+|+||||||.|||++ +++.+||+|||+|+.+.......+.
T Consensus 120 ~~~~l~e~~~~~i~~qi~~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~a 196 (352)
T d1koba_ 120 EDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAA 196 (352)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccC
Confidence 5567999999999999999999999 67899999999999998 5789999999999987654321100
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|..+. ....+...+...... +.+.. .......+
T Consensus 197 PE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~--~~~~~~~~i~~~~~~-----~~~~~----------~~~~s~~~ 259 (352)
T d1koba_ 197 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE--DDLETLQNVKRCDWE-----FDEDA----------FSSVSPEA 259 (352)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS--SHHHHHHHHHHCCCC-----CCSST----------TTTSCHHH
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCC-----CCccc----------ccCCCHHH
Confidence 0122378999 7 898887531 111111111111000 00000 01112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+++.+|++.+|++|||+.||++
T Consensus 260 ~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 260 KDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67889999999999999999976
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.7e-21 Score=188.28 Aligned_cols=176 Identities=24% Similarity=0.196 Sum_probs=96.0
Q ss_pred CccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchh
Q 041082 167 NLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLE 246 (639)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~ 246 (639)
+++.|+|++|++++..+..|.++++|+.|+|++|+++.+. .++.+++|++|+|++|+++..+
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~~---------------- 93 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLP---------------- 93 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSCC----------------
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccccccccccccc----------------
Confidence 3444455555555444555666666666666666665432 2455666666666666655421
Q ss_pred hhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcE
Q 041082 247 QSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYE 326 (639)
Q Consensus 247 ~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 326 (639)
..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++++.
T Consensus 94 ---------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~ 152 (266)
T d1p9ag_ 94 ---------------------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (266)
T ss_dssp ---------------------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ---------------------cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchh
Confidence 12334455555555555555544445555555555555555555555555555555555
Q ss_pred EECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCC
Q 041082 327 LDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFF 382 (639)
Q Consensus 327 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 382 (639)
+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++
T Consensus 153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 555555555555555555555555555555555 2444444455555555555554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.5e-21 Score=188.41 Aligned_cols=198 Identities=25% Similarity=0.216 Sum_probs=170.7
Q ss_pred ccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhh
Q 041082 168 LENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQ 247 (639)
Q Consensus 168 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~ 247 (639)
+...+.++++++ .+|..+. +++++|+|++|+++++.+..|..+++|++|+|++|+++..+
T Consensus 12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~----------------- 71 (266)
T d1p9ag_ 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----------------- 71 (266)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-----------------
T ss_pred CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-----------------
Confidence 334455555555 3565443 57999999999999888888999999999999999876321
Q ss_pred hccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEE
Q 041082 248 SSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYEL 327 (639)
Q Consensus 248 ~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 327 (639)
.+..+++|+.|++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.+++.|
T Consensus 72 ---------------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 129 (266)
T d1p9ag_ 72 ---------------------VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (266)
T ss_dssp ---------------------CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred ---------------------cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccccc
Confidence 13457889999999999985 46678899999999999999998888899999999999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCC
Q 041082 328 DLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFS 407 (639)
Q Consensus 328 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~ 407 (639)
++++|.++...+..+..+++++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..++.|+.|+|++|++.
T Consensus 130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 99999999888889999999999999999999999999999999999999999998 68888889999999999999986
Q ss_pred C
Q 041082 408 G 408 (639)
Q Consensus 408 g 408 (639)
.
T Consensus 209 C 209 (266)
T d1p9ag_ 209 C 209 (266)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.86 E-value=7.5e-23 Score=201.64 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=135.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh---------hhhhHHHHHHHHH---------------------hhhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER---------AFKSFDVACDMMK---------------------KLVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~---------~~~~f~~e~~~~~---------------------~Lv~ey~~ 455 (639)
.++|.||++.- .+|..+|||+++..... ....+..|+.+++ .+||||++
T Consensus 14 G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~ 93 (277)
T d1phka_ 14 GVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMK 93 (277)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred CcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCC
Confidence 45899999985 57899999998654321 1223555665533 27899999
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
+|+|.+++... ..+++.+...++.||++||+||| ..+|+||||||+||+++.++.+||+|||+|+.+.......
T Consensus 94 ~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~ 169 (277)
T d1phka_ 94 KGELFDYLTEK-VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 169 (277)
T ss_dssp TCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCC
T ss_pred CchHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH---HcCCcccccccceEEEcCCCCeEEccchheeEccCCCceeee
Confidence 99999999753 36899999999999999999999 5689999999999999999999999999998776432210
Q ss_pred --cc----------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccc
Q 041082 534 --TQ----------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSME 586 (639)
Q Consensus 534 --~~----------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 586 (639)
+. ...+.++||| | ||+.|..+.. ......-+ .... .+...+
T Consensus 170 ~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~--~~~~~~~i---~~~~-~~~~~~------ 237 (277)
T d1phka_ 170 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK--QMLMLRMI---MSGN-YQFGSP------ 237 (277)
T ss_dssp CSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHH---HHTC-CCCCTT------
T ss_pred eccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC--HHHHHHHH---HhCC-CCCCCc------
Confidence 00 0012357888 6 8888875321 11111111 1010 000000
Q ss_pred cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 587 DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
........+.+++.+|++.+|++|||+.||++
T Consensus 238 -----~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 238 -----EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp -----TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred -----ccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 01112235667889999999999999999865
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-22 Score=205.69 Aligned_cols=145 Identities=23% Similarity=0.310 Sum_probs=112.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh-hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE-RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~-~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++.. ..|..+|+|++..... .....+..|+.+++. +||||+++|+|.+++.
T Consensus 17 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~ 96 (322)
T d1s9ja_ 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 96 (322)
T ss_dssp CSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHh
Confidence 56899999986 4689999999875432 223466777777543 7899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ------ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~------ 535 (639)
.. ..+++.....++.++++||.|||+. .+|+||||||+|||++.++.+||+|||+|+.+.+.... ++.
T Consensus 97 ~~-~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APE 173 (322)
T d1s9ja_ 97 KA-GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPE 173 (322)
T ss_dssp HH-SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHH
T ss_pred hc-CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCch
Confidence 53 3589999999999999999999952 36999999999999999999999999999976543221 000
Q ss_pred ----cccccccccc--c-------CCCCCCCc
Q 041082 536 ----NTNTCHHRIY--G-------TRRNPQMN 554 (639)
Q Consensus 536 ----~~~~~~~dvy--G-------tg~~p~~~ 554 (639)
...+.++||| | ||+.|...
T Consensus 174 vl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~ 205 (322)
T d1s9ja_ 174 RLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 205 (322)
T ss_dssp HHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 1123388999 7 89998764
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2e-22 Score=199.65 Aligned_cols=192 Identities=22% Similarity=0.282 Sum_probs=135.6
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|||++.... ......+..|+++++. +||||+++|+|.++
T Consensus 19 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~ 98 (288)
T d1uu3a_ 19 GSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKY 98 (288)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHh
Confidence 56899999986 468999999987543 2234567778877543 78999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--cccc----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS--FTQN---- 536 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~--~~~~---- 536 (639)
+... ..+++.....++.+++.||+||| +.+|+||||||+||++++++.+||+|||+|+.+...... ....
T Consensus 99 ~~~~-~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~ 174 (288)
T d1uu3a_ 99 IRKI-GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTA 174 (288)
T ss_dssp HHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCG
T ss_pred hhcc-CCCCHHHHHHHHHHHHHHHHhhc---cccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCc
Confidence 7643 35899999999999999999999 678999999999999999999999999999977532211 0000
Q ss_pred -----------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 537 -----------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 537 -----------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
..+.++||| | ||+.|.... +-.+-......... + +.. ..
T Consensus 175 ~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-----~~~~~~~~i~~~~~-~-~p~--------------~~ 233 (288)
T d1uu3a_ 175 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-----NEYLIFQKIIKLEY-D-FPE--------------KF 233 (288)
T ss_dssp GGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHTTCC-C-CCT--------------TC
T ss_pred cccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc-----CHHHHHHHHHcCCC-C-CCc--------------cC
Confidence 112378898 7 888887531 11111111111110 0 000 11
Q ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...+.++..+|++.+|++|||+.|+..
T Consensus 234 s~~~~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 234 FPKARDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp CHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred CHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence 124567888999999999999999754
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.1e-22 Score=201.24 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=133.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHH-------------------------HhhhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMM-------------------------KKLVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~-------------------------~~Lv~ey~~~gsL~ 460 (639)
.+||.||++.. .++..+|||++... ..+..|+.++ -.+||||+++|+|.
T Consensus 23 G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~ 97 (335)
T d2ozaa1 23 GINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELF 97 (335)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHH
Confidence 56899999985 56899999998643 2233344331 13789999999999
Q ss_pred hccccC-CccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC---CcceeeccccccccccccCCCc---
Q 041082 461 KCLYSS-NYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN---NMVAHLSDFGMAKLLLKEDQSF--- 533 (639)
Q Consensus 461 ~~l~~~-~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~---~~~~~i~dfgla~~~~~~~~~~--- 533 (639)
+++... ...+++.+...|+.+++.||+||| ..+|+||||||+|||++. ++.+|++|||+|+.........
T Consensus 98 ~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~ 174 (335)
T d2ozaa1 98 SRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC 174 (335)
T ss_dssp HHHHSCSCCCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCS
T ss_pred HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHH---HcCCccccccccccccccccccccccccccceeeeccCCCcccccc
Confidence 999753 356999999999999999999999 678999999999999985 4679999999998765433210
Q ss_pred -c------c----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccch
Q 041082 534 -T------Q----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTK 593 (639)
Q Consensus 534 -~------~----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 593 (639)
+ . ...+.++||| | ||+.|..+. ........+....... .++ .. ....
T Consensus 175 gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~--~~~~~~~~~~~~i~~~---~~~--~~------~~~~ 241 (335)
T d2ozaa1 175 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN--HGLAISPGMKTRIRMG---QYE--FP------NPEW 241 (335)
T ss_dssp CCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEET--TCC--------CCCSC---SSS--CC------TTHH
T ss_pred CCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCC--CHHHHHHHHHHHHhcC---CCC--CC------Cccc
Confidence 0 0 0122378888 7 888887532 1111111111111100 000 00 0011
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 594 KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 594 ~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
......+.++..+|++.+|++|||+.|+++
T Consensus 242 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 242 SEVSEEVKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp HHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 223345778899999999999999999976
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.8e-22 Score=199.87 Aligned_cols=196 Identities=19% Similarity=0.269 Sum_probs=136.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh------hhhhhHHHHHHHHHh--------------------hhhhcCCCCCc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE------RAFKSFDVACDMMKK--------------------LVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~------~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL 459 (639)
.+||.||++.. .+|..+|||++..... .....+..|+.+++. +||||+++|+|
T Consensus 21 G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L 100 (293)
T d1jksa_ 21 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGEL 100 (293)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccc
Confidence 46899999986 4689999999864322 123567788877543 78999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc----ceeeccccccccccccCCCccc
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM----VAHLSDFGMAKLLLKEDQSFTQ 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~----~~~i~dfgla~~~~~~~~~~~~ 535 (639)
.+++... ..+++.....++.+++.||+||| ..+|+||||||+||+++.++ .+|++|||+|+.........+.
T Consensus 101 ~~~i~~~-~~l~~~~~~~~~~qi~~al~yLH---~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~ 176 (293)
T d1jksa_ 101 FDFLAEK-ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNI 176 (293)
T ss_dssp HHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCC
T ss_pred cchhccc-cccchhHHHHHHHHHHHHHHhhh---hcceeecccccceEEEecCCCcccceEecchhhhhhcCCCcccccc
Confidence 9988653 35899999999999999999999 66899999999999998776 4899999999877543321100
Q ss_pred --------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 536 --------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 536 --------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
...+.++||| | ||+.|.... +-.+.......... + ..+. .
T Consensus 177 ~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-----~~~~~~~~i~~~~~-~-~~~~----------~ 239 (293)
T d1jksa_ 177 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANVSAVNY-E-FEDE----------Y 239 (293)
T ss_dssp CCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHTTCC-C-CCHH----------H
T ss_pred CCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC-----CHHHHHHHHHhcCC-C-CCch----------h
Confidence 1123378888 6 888876531 11111111111100 0 0000 0
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.......+.++..+|++.+|++|||+.||++
T Consensus 240 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 240 FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0112234567888999999999999999975
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=8.2e-22 Score=201.92 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=132.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHH---HHHHH--------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVA---CDMMK--------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e---~~~~~--------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .|..+|||+++.... .....+..+ +..++ ++||||+++|+|
T Consensus 15 G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L 94 (364)
T d1omwa3 15 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL 94 (364)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcH
Confidence 569999999864 689999999864332 112223333 33321 378999999999
Q ss_pred hhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc---cc-
Q 041082 460 EKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---TQ- 535 (639)
Q Consensus 460 ~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---~~- 535 (639)
.+++... ..+++.....++.+|+.||+||| ..+|+||||||+|||++.++.+||+|||+|+.+....... +.
T Consensus 95 ~~~l~~~-~~~~e~~~~~~~~qi~~aL~ylH---~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~ 170 (364)
T d1omwa3 95 HYHLSQH-GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHG 170 (364)
T ss_dssp HHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGG
T ss_pred HHHHHhc-ccccHHHHHHHHHHHHHHHHHHH---HCCccceeeccceeEEcCCCcEEEeeeceeeecCCCcccccccccc
Confidence 9998653 35788889999999999999999 6789999999999999999999999999999776443211 00
Q ss_pred ----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHH
Q 041082 536 ----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQC 596 (639)
Q Consensus 536 ----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 596 (639)
...+.++||| | ||+.|....- ........+....... .+ +...
T Consensus 171 y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~--~~~~~~~~~~~~~~~~------~~----------~~~~ 232 (364)
T d1omwa3 171 YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK--TKDKHEIDRMTLTMAV------EL----------PDSF 232 (364)
T ss_dssp GCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSC--SSCHHHHHHHSSSCCC------CC----------CSSS
T ss_pred cchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcccCCC------CC----------CCCC
Confidence 0112367888 7 8888875421 1222222221111110 00 0011
Q ss_pred HHHHHHHHhhccCCCCCCCCCH-----HHHHH
Q 041082 597 LSFVFNLAMECTAESPKQRINA-----KESVT 623 (639)
Q Consensus 597 ~~~~~~l~~~C~~~~p~~RP~m-----~~v~~ 623 (639)
...+.++..+|++.+|++|||+ .|+.+
T Consensus 233 s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~ 264 (364)
T d1omwa3 233 SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 264 (364)
T ss_dssp CHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred CHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence 1235678889999999999994 66653
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1.7e-22 Score=202.26 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=126.2
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh-hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE-RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~-~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++... .|..+|||++..... .....+..|+.+++ ++||||+++|+|.+++.
T Consensus 20 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~ 99 (307)
T d1a06a_ 20 GAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV 99 (307)
T ss_dssp GGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH
T ss_pred ccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhh
Confidence 468999999864 588999999875432 22345666777754 27899999999999987
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCccc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSFTQ------ 535 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~~~------ 535 (639)
. ...+++.....++.+++.||+||| ..+|+||||||.||++. +++.+||+|||+|+.........+.
T Consensus 100 ~-~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y 175 (307)
T d1a06a_ 100 E-KGFYTERDASRLIFQVLDAVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGY 175 (307)
T ss_dssp T-CSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTT
T ss_pred c-ccCCCHHHHHHHHHHHHHHHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccc
Confidence 5 346899999999999999999999 66899999999999994 5789999999999876543321100
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
...+.++||| | ||+.|..+. ....+...+...-.. ++... ......
T Consensus 176 ~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~--~~~~~~~~i~~~~~~-----~~~~~----------~~~~s~ 238 (307)
T d1a06a_ 176 VAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE--NDAKLFEQILKAEYE-----FDSPY----------WDDISD 238 (307)
T ss_dssp SCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHTTCCC-----CCTTT----------TTTSCH
T ss_pred cCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC--CHHHHHHHHhccCCC-----CCCcc----------ccCCCH
Confidence 0123378888 7 888887532 111222222110000 00000 011123
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 599 FVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+.++..+|++.+|++|||+.|+++
T Consensus 239 ~~~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 239 SAKDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHccCCHhHCcCHHHHhc
Confidence 4667889999999999999999987
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.7e-22 Score=199.77 Aligned_cols=196 Identities=16% Similarity=0.230 Sum_probs=137.3
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhcccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKCLYS 465 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~l~~ 465 (639)
.+||.||++... ++..+|+|.+...... ...+..|+++++ ++||||+++|+|.+++..
T Consensus 16 G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~-~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~ 94 (321)
T d1tkia_ 16 GEFGIVHRCVETSSKKTYMAKFVKVKGTD-QVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINT 94 (321)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECCCTHH-HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTS
T ss_pred CCCeEEEEEEECCCCcEEEEEEEcCCccc-HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHh
Confidence 468999999864 6889999999765432 234667777654 279999999999999976
Q ss_pred CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC--CcceeeccccccccccccCCCccc--------
Q 041082 466 SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN--NMVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 466 ~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~--~~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
....+++.+...|+.+++.||+||| +.+|+||||||+||+++. ...+|++|||+++.........+.
T Consensus 95 ~~~~l~e~~~~~i~~qi~~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~a 171 (321)
T d1tkia_ 95 SAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYA 171 (321)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCCccccccccccccc
Confidence 5557899999999999999999999 678999999999999985 457999999999876543321100
Q ss_pred ------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHH
Q 041082 536 ------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFV 600 (639)
Q Consensus 536 ------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~ 600 (639)
...+.++||| | ||+.|.... +-.+.......... .++... .......+
T Consensus 172 pe~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~-----~~~~~~~~i~~~~~--~~~~~~----------~~~~s~~~ 234 (321)
T d1tkia_ 172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-----TNQQIIENIMNAEY--TFDEEA----------FKEISIEA 234 (321)
T ss_dssp HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCC--CCCHHH----------HTTSCHHH
T ss_pred chhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCC--CCChhh----------ccCCCHHH
Confidence 0112378998 7 888887531 11111111110000 001000 00112245
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 041082 601 FNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 601 ~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.++..+|++.+|++|||+.|+++
T Consensus 235 ~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 235 MDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67888999999999999999986
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.2e-21 Score=195.69 Aligned_cols=214 Identities=22% Similarity=0.203 Sum_probs=135.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.++|.||++.. ..|..+|||++..... .....+..|+++++. +|+||+.++.+....
T Consensus 13 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~~~~~~~~ 92 (298)
T d1gz8a_ 13 GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD 92 (298)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCCchhhhhh
Confidence 46899999986 5689999999865432 234567788888553 689999765443333
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc--------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ-------- 535 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~-------- 535 (639)
......+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||+|+...........
T Consensus 93 ~~~~~~l~e~~~~~~~~qil~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~ 169 (298)
T d1gz8a_ 93 ASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169 (298)
T ss_dssp HTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTC
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceee
Confidence 334456999999999999999999999 567999999999999999999999999999877543321100
Q ss_pred --------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC-c-ceee-eccccccccc-cccc-
Q 041082 536 --------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS-V-MEVV-DVNLLSMEDK-YFTT- 592 (639)
Q Consensus 536 --------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~-~-~~~~-d~~l~~~~~~-~~~~- 592 (639)
...+.++|+| | ||+.|....-. ...+..-..... +.. . ..+. .+........ ....
T Consensus 170 apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (298)
T d1gz8a_ 170 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE-IDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDF 248 (298)
T ss_dssp CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCH
T ss_pred ehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCH-HHHHHHHHHhcCCCchhhccccccccccccccccccccch
Confidence 1123378999 7 89988753210 011111111111 111 0 0000 0000000000 0000
Q ss_pred ---hHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 593 ---KKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 593 ---~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.......+.++..+|++.+|++|||+.|+++.
T Consensus 249 ~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H 283 (298)
T d1gz8a_ 249 SKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 283 (298)
T ss_dssp HHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 01112456778889999999999999999763
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=4.4e-22 Score=196.84 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=140.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH------------------------hhhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK------------------------KLVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~------------------------~Lv~ey~~~gs 458 (639)
.++|.||++.- ..|+.+|||++..... .....|..|++.++ ++||||+++|+
T Consensus 18 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~ 97 (277)
T d1o6ya_ 18 GGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVT 97 (277)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCE
Confidence 56899999985 5789999999865432 23446777777732 27999999999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC---ccc
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS---FTQ 535 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~---~~~ 535 (639)
|.+++... ..+++.+...|+.+++.||+||| +.+|+||||||+||+++.++.++++|||.++........ ...
T Consensus 98 L~~~~~~~-~~l~~~~~~~i~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 173 (277)
T d1o6ya_ 98 LRDIVHTE-GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAA 173 (277)
T ss_dssp HHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEECC-----------
T ss_pred ehhhhccc-CCCCHHHHHHHHHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhhhcccccccccccc
Confidence 99877642 35899999999999999999999 678999999999999999999999999998765432211 000
Q ss_pred ---------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeecccccccccccc
Q 041082 536 ---------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 ---------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | ||+.|.... +-.+......... ...+...
T Consensus 174 ~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-----~~~~~~~~~~~~~---~~~~~~~-------- 237 (277)
T d1o6ya_ 174 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-----SPVSVAYQHVRED---PIPPSAR-------- 237 (277)
T ss_dssp -----TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHCC---CCCGGGT--------
T ss_pred ccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc-----CHHHHHHHHHhcC---CCCCchh--------
Confidence 0112378888 6 888887531 1111111111111 0011100
Q ss_pred chHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhH
Q 041082 592 TKKQCLSFVFNLAMECTAESPKQRI-NAKESVTRLLKIR 629 (639)
Q Consensus 592 ~~~~~~~~~~~l~~~C~~~~p~~RP-~m~~v~~~l~~~~ 629 (639)
.......+.++..+|++.+|++|| |+.++.+.|.+++
T Consensus 238 -~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~ 275 (277)
T d1o6ya_ 238 -HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 275 (277)
T ss_dssp -SSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence 011123466788899999999999 8999999998774
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.83 E-value=1.6e-21 Score=193.91 Aligned_cols=212 Identities=21% Similarity=0.225 Sum_probs=136.3
Q ss_pred CCcCcceEEEecCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++...+|..+|||++..... .....+..|+.+++. +++||+.++.+.....
T Consensus 13 G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~ 92 (286)
T d1ob3a_ 13 GTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV 92 (286)
T ss_dssp ETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHT
T ss_pred CCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHh
Confidence 458999999999999999999865432 234577788887553 5678887765555443
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc-----c-----
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF-----T----- 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~-----~----- 534 (639)
....++......|+.++++||+||| ..+|+||||||+|||++.++.+|++|||+|.......... +
T Consensus 93 -~~~~l~~~~~~~i~~qi~~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~ 168 (286)
T d1ob3a_ 93 -CEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRA 168 (286)
T ss_dssp -STTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCC
T ss_pred -hcCCcchhhhHHHHHHHHHHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhh
Confidence 3456899999999999999999999 5679999999999999999999999999998765432110 0
Q ss_pred ------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CC--Cccee-----eecccccccc-ccc
Q 041082 535 ------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PI--SVMEV-----VDVNLLSMED-KYF 590 (639)
Q Consensus 535 ------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~--~~~~~-----~d~~l~~~~~-~~~ 590 (639)
....+.++|+| | ||+.|..+.-. ...+........ +. ...+. .+........ ...
T Consensus 169 pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (286)
T d1ob3a_ 169 PDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE-ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWE 247 (286)
T ss_dssp HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGG
T ss_pred HHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCH-HHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchh
Confidence 01123478999 7 89998764211 011111111111 10 00000 0000000000 000
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
+........+.+++.+|++.+|++|||+.|+++
T Consensus 248 ~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~ 280 (286)
T d1ob3a_ 248 SFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (286)
T ss_dssp GTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001111234667888999999999999999874
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.2e-21 Score=194.15 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=132.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.- ..|..+|+|+++.... .....+..|+.+++ ++|+||+++|+|.++
T Consensus 16 G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~ 95 (337)
T d1o6la_ 16 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFH 95 (337)
T ss_dssp CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhh
Confidence 46899999985 5789999999975432 23345666776644 278999999999998
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccccc-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQNT----- 537 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~~----- 537 (639)
+... ..++......++.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+.............
T Consensus 96 ~~~~-~~~~e~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y 171 (337)
T d1o6la_ 96 LSRE-RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEY 171 (337)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGG
T ss_pred hhcc-cCCcHHHHHHHHHHHhhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHH
Confidence 8753 35778888889999999999999 67899999999999999999999999999987644322111111
Q ss_pred ----------cccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHH
Q 041082 538 ----------NTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLS 598 (639)
Q Consensus 538 ----------~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 598 (639)
.+.++|+| | ||+.|... .+..+......... +.. +.....
T Consensus 172 ~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~-----~~~~~~~~~i~~~~------~~~----------p~~~s~ 230 (337)
T d1o6la_ 172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHERLFELILMEE------IRF----------PRTLSP 230 (337)
T ss_dssp CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCC------CCC----------CTTSCH
T ss_pred hhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCC-----cCHHHHHHHHhcCC------CCC----------CccCCH
Confidence 12267777 6 77777643 11111111111110 000 011122
Q ss_pred HHHHHHhhccCCCCCCCCC-----HHHHHH
Q 041082 599 FVFNLAMECTAESPKQRIN-----AKESVT 623 (639)
Q Consensus 599 ~~~~l~~~C~~~~p~~RP~-----m~~v~~ 623 (639)
.+.++..+|++.+|++||+ ..|+.+
T Consensus 231 ~~~dli~~~L~~dP~~R~~~~~~~~~eil~ 260 (337)
T d1o6la_ 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHhhccCCchhhcccccccHHHHHc
Confidence 3567888999999999995 666654
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.9e-21 Score=191.49 Aligned_cols=211 Identities=21% Similarity=0.248 Sum_probs=132.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh-----hhhhHHHHHHHHHh--------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER-----AFKSFDVACDMMKK--------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~-----~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.. ..|+.+|||++...... ....+..|+.+++. +||||+.++++.
T Consensus 9 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~ 88 (299)
T d1ua2a_ 9 GQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEV 88 (299)
T ss_dssp ETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHH
T ss_pred CcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHh
Confidence 46899999986 45899999998654322 12456677777543 689999988776
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCccc-----
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQ----- 535 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~----- 535 (639)
.... ....+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+|+...........
T Consensus 89 ~~~~-~~~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~ 164 (299)
T d1ua2a_ 89 IIKD-NSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTR 164 (299)
T ss_dssp HHTT-CCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCC
T ss_pred hhhh-cccCCCHHHHHHHHHHHHHHHHHhh---ccceecccCCcceEEecCCCccccccCccccccCCCcccccceecCh
Confidence 6554 3445788888999999999999999 668999999999999999999999999999876543221000
Q ss_pred -----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC--CC--Ccceeeecccccccccccc
Q 041082 536 -----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL--PI--SVMEVVDVNLLSMEDKYFT 591 (639)
Q Consensus 536 -----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~--~~--~~~~~~d~~l~~~~~~~~~ 591 (639)
...+.++||| | ||+.|.... ...+...-+.... +. ...+...............
T Consensus 165 ~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (299)
T d1ua2a_ 165 WYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPG 242 (299)
T ss_dssp TTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCC
T ss_pred hhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC--CHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCC
Confidence 0113378999 7 888776531 1111111111111 00 0000000000000000000
Q ss_pred ch-----HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 592 TK-----KQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 592 ~~-----~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.+ ...-..+.++..+|++.+|++|||+.|+++
T Consensus 243 ~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~ 279 (299)
T d1ua2a_ 243 IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 279 (299)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence 00 011235678889999999999999999875
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=4.2e-21 Score=192.80 Aligned_cols=192 Identities=23% Similarity=0.255 Sum_probs=135.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh---hhhhhhHHHHHHHHH--------------------hhhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY---ERAFKSFDVACDMMK--------------------KLVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~---~~~~~~f~~e~~~~~--------------------~Lv~ey~~~gsL~~~ 462 (639)
.++|.||++.. .+|..+|||++.... ....+.+..|+.+++ .+||||+++|++..+
T Consensus 15 G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~ 94 (316)
T d1fota_ 15 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL 94 (316)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCcccccc
Confidence 46899999986 468999999986443 233456777777754 368999999999888
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c------
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T------ 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~------ 534 (639)
+... ..+++.....++.+++.||+||| +.+|+||||||+|||++.++.+||+|||+|+......... +
T Consensus 95 ~~~~-~~~~~~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~AP 170 (316)
T d1fota_ 95 LRKS-QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAP 170 (316)
T ss_dssp HHHT-SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCH
T ss_pred cccc-ccccccHHHHHHHHHHHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCH
Confidence 7643 35788888889999999999999 7789999999999999999999999999999875443221 0
Q ss_pred ----ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 535 ----QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 535 ----~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
....+.++||| | ||+.|..+. +-.+.......... .+. ......+.
T Consensus 171 E~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~-----~~~~~~~~i~~~~~--~~p--------------~~~s~~~~ 229 (316)
T d1fota_ 171 EVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-----NTMKTYEKILNAEL--RFP--------------PFFNEDVK 229 (316)
T ss_dssp HHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHCCC--CCC--------------TTSCHHHH
T ss_pred HHHcCCCCCchhhccccchhHHHHHhCCCCCCCc-----CHHHHHHHHHcCCC--CCC--------------CCCCHHHH
Confidence 01122377888 6 888887531 11111111111100 000 01112356
Q ss_pred HHHhhccCCCCCCCC-----CHHHHHH
Q 041082 602 NLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
++..+|++.+|++|| |+.|+.+
T Consensus 230 ~li~~~L~~dp~~R~~~~r~t~~~il~ 256 (316)
T d1fota_ 230 DLLSRLITRDLSQRLGNLQNGTEDVKN 256 (316)
T ss_dssp HHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhhhCHHhccccchhhHHHHHc
Confidence 788899999999996 8888875
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.1e-21 Score=191.00 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=130.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhh---hhhhhHHHHHHHHH---------------------hhhhhcCCCCCchh
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYE---RAFKSFDVACDMMK---------------------KLVLEYMPHGSLEK 461 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~---~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~ 461 (639)
.+||.||++... .|+.+|||++..... .....+..|...+. ++|+||+++|+|.+
T Consensus 13 G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~ 92 (320)
T d1xjda_ 13 GSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMY 92 (320)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHH
T ss_pred CCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHH
Confidence 468999999864 689999999975432 22233334433321 27899999999999
Q ss_pred ccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcccc-----
Q 041082 462 CLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFTQN----- 536 (639)
Q Consensus 462 ~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~~~----- 536 (639)
++... ..++..+...++.+||.||+||| +.+|+||||||+|||+++++.+|++|||+|+............
T Consensus 93 ~i~~~-~~~~e~~~~~~~~qi~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~ 168 (320)
T d1xjda_ 93 HIQSC-HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPD 168 (320)
T ss_dssp HHHHH-SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGG
T ss_pred Hhhcc-CCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCC
Confidence 98753 35788888999999999999999 5679999999999999999999999999998654332211111
Q ss_pred ----------ccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHH
Q 041082 537 ----------TNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCL 597 (639)
Q Consensus 537 ----------~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 597 (639)
..+.++||| | ||+.|..+. ....+..-+... .+.. +....
T Consensus 169 y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~--~~~~~~~~i~~~---------~~~~----------p~~~s 227 (320)
T d1xjda_ 169 YIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ--DEEELFHSIRMD---------NPFY----------PRWLE 227 (320)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHC---------CCCC----------CTTSC
T ss_pred cCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC--CHHHHHHHHHcC---------CCCC----------CccCC
Confidence 112378888 6 888887531 111111111110 0000 01112
Q ss_pred HHHHHHHhhccCCCCCCCCCHH-HHH
Q 041082 598 SFVFNLAMECTAESPKQRINAK-ESV 622 (639)
Q Consensus 598 ~~~~~l~~~C~~~~p~~RP~m~-~v~ 622 (639)
..+.++..+|++.+|++||++. |+.
T Consensus 228 ~~~~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 228 KEAKDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHHHHhcccCCCCCcCHHHHHH
Confidence 2466788899999999999995 664
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4.1e-20 Score=188.44 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=95.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh-hhhhhhHHHHHHHHHh------------------------hhhhcCCCCCch
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY-ERAFKSFDVACDMMKK------------------------LVLEYMPHGSLE 460 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~-~~~~~~f~~e~~~~~~------------------------Lv~ey~~~gsL~ 460 (639)
.+||.||++.- .+|..+|||+++... ....+.+..|+.+++. .+++|+.+|+|.
T Consensus 19 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~ 98 (345)
T d1pmea_ 19 GAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLY 98 (345)
T ss_dssp --CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHH
T ss_pred ccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchh
Confidence 56899999974 578999999987543 2334566677777543 245788899999
Q ss_pred hccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 461 KCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 461 ~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
+++.. ..+++.....++.++++||+||| ..+|+||||||+|||++.++.+||+|||+|+....
T Consensus 99 ~~l~~--~~l~~~~i~~i~~qil~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~ 161 (345)
T d1pmea_ 99 KLLKT--QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP 161 (345)
T ss_dssp HHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred hhhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence 98864 35899999999999999999999 66899999999999999999999999999987644
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=7.5e-21 Score=193.61 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=134.7
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh---hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE---RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~---~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.. .+|..+|||++..... .....+..|+.+++. +|+||+.+|++..+
T Consensus 52 G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~ 131 (350)
T d1rdqe_ 52 GSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSH 131 (350)
T ss_dssp CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred CcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhh
Confidence 46899999986 4689999999865432 233456677777542 68999999999988
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc-----
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ----- 535 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~----- 535 (639)
+... ..+++.....++.++++||.||| +.+|+||||||.|||++.++.+||+|||+|+.+....... +.
T Consensus 132 l~~~-~~l~e~~~~~i~~qi~~aL~yLH---~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~AP 207 (350)
T d1rdqe_ 132 LRRI-GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAP 207 (350)
T ss_dssp HHHH-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCH
T ss_pred Hhhc-CCCCHHHHHHHHHHHHHHHHHHH---hCCEecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCH
Confidence 8643 35899999999999999999999 6689999999999999999999999999999875433221 00
Q ss_pred -----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccchHHHHHHHH
Q 041082 536 -----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTTKKQCLSFVF 601 (639)
Q Consensus 536 -----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~ 601 (639)
...+.++||| | ||+.|... .+..+......... +.. +......+.
T Consensus 208 E~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~-----~~~~~~~~~i~~~~------~~~----------p~~~s~~~~ 266 (350)
T d1rdqe_ 208 EIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA-----DQPIQIYEKIVSGK------VRF----------PSHFSSDLK 266 (350)
T ss_dssp HHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHHHHHHHHCC------CCC----------CTTCCHHHH
T ss_pred HHHcCCCCCccccccchhHHHHHHHhCCCCCCC-----cCHHHHHHHHhcCC------CCC----------CccCCHHHH
Confidence 0112367888 6 88888652 11111111111110 000 011122456
Q ss_pred HHHhhccCCCCCCCC-----CHHHHHH
Q 041082 602 NLAMECTAESPKQRI-----NAKESVT 623 (639)
Q Consensus 602 ~l~~~C~~~~p~~RP-----~m~~v~~ 623 (639)
++..+|++.+|++|| |+.|+.+
T Consensus 267 ~li~~~L~~dP~kR~~~~r~t~~ell~ 293 (350)
T d1rdqe_ 267 DLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhhhCHHhccccccccHHHHHc
Confidence 788899999999994 8888875
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=1.5e-20 Score=187.96 Aligned_cols=217 Identities=19% Similarity=0.191 Sum_probs=133.5
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh---------------------hhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK---------------------LVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~---------------------Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++.. .+|..||||.+..... ...+..|.+.++. +|+||+. |++...+.
T Consensus 18 G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~ 94 (299)
T d1ckia_ 18 GSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFN 94 (299)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHH
T ss_pred CCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-Cchhhhhh
Confidence 56999999985 5689999998765432 2456666666432 5788884 56666555
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeec---CCcceeeccccccccccccCCCc-------c
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLG---NNMVAHLSDFGMAKLLLKEDQSF-------T 534 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~---~~~~~~i~dfgla~~~~~~~~~~-------~ 534 (639)
.....+++..+..++.+++.||+||| +.+|+||||||+||+++ .+..+|++|||+|+.+....... .
T Consensus 95 ~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~ 171 (299)
T d1ckia_ 95 FCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 171 (299)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccC
Confidence 45567899999999999999999999 67899999999999875 45679999999999876433210 0
Q ss_pred cccccc---ccccc-cCCCCCCCccCCCccchHHHHHhhCCCCcceeeec--ccc-cccc----ccccchHHHHHHHHHH
Q 041082 535 QNTNTC---HHRIY-GTRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDV--NLL-SMED----KYFTTKKQCLSFVFNL 603 (639)
Q Consensus 535 ~~~~~~---~~dvy-Gtg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~l~-~~~~----~~~~~~~~~~~~~~~l 603 (639)
...+|. ...++ |.+..+..|+|+.|..+.+++....|.......+. .+. .... ........+...+.++
T Consensus 172 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 251 (299)
T d1ckia_ 172 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATY 251 (299)
T ss_dssp SCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHH
T ss_pred CcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHH
Confidence 001111 00000 11112222333444444444443333211000000 000 0000 0000011233557788
Q ss_pred HhhccCCCCCCCCCHHHHHHHHHHhH
Q 041082 604 AMECTAESPKQRINAKESVTRLLKIR 629 (639)
Q Consensus 604 ~~~C~~~~p~~RP~m~~v~~~l~~~~ 629 (639)
+..|++.+|++||++.++.+.|+++.
T Consensus 252 i~~cl~~~p~~RP~~~~i~~~l~~~~ 277 (299)
T d1ckia_ 252 LNFCRSLRFDDKPDYSYLRQLFRNLF 277 (299)
T ss_dssp HHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHccCChhHCcCHHHHHHHHHHHH
Confidence 89999999999999999999888764
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.6e-20 Score=187.32 Aligned_cols=207 Identities=21% Similarity=0.256 Sum_probs=129.5
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH--------------------------hhhhhcCCCCCc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK--------------------------KLVLEYMPHGSL 459 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~gsL 459 (639)
.+||.||++... .|..+|||++...... ...|+.+++ .+||||+++|.+
T Consensus 31 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~ 106 (350)
T d1q5ka_ 31 GSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVY 106 (350)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHH
T ss_pred CcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccH
Confidence 468999999874 6899999998654322 223444422 268899987644
Q ss_pred hhcccc--CCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCcc--
Q 041082 460 EKCLYS--SNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSFT-- 534 (639)
Q Consensus 460 ~~~l~~--~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~~-- 534 (639)
....+. ....+++.....++.+++.||+||| +.+|+||||||+|||++.++ .+||+|||+|+.+.......+
T Consensus 107 ~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH---~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~ 183 (350)
T d1q5ka_ 107 RVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYI 183 (350)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCC
T ss_pred HHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH---hcCCcccCCCcceEEEecCCCceeEecccchhhccCCccccccc
Confidence 333321 3456899999999999999999999 77899999999999999774 899999999987654332110
Q ss_pred -------------ccccccccccc--c-------CCCCCCCccCCCccchHH-----------HHHhhCCCCcceeeecc
Q 041082 535 -------------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKS-----------WVNDLLPISVMEVVDVN 581 (639)
Q Consensus 535 -------------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~d~~ 581 (639)
....+.++||| | ||+.|....- ....+.. +.....+......+ +.
T Consensus 184 gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~-~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~-~~ 261 (350)
T d1q5ka_ 184 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKF-PQ 261 (350)
T ss_dssp SCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCC---CCCC-CC
T ss_pred ccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCC-HHHHHHHHHHHhCCChHHhhhhhccchhhccc-cc
Confidence 01123378999 7 8988875321 1111111 11111111000000 00
Q ss_pred ccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 582 LLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....... ..........+.++..+|+..+|++|||+.|+++
T Consensus 262 ~~~~~~~-~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 302 (350)
T d1q5ka_ 262 IKAHPWT-KVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 302 (350)
T ss_dssp CCCCCGG-GTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccCchh-hhcccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0000000 0000111224667888999999999999999985
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.9e-20 Score=183.66 Aligned_cols=209 Identities=20% Similarity=0.246 Sum_probs=136.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh--------------------hhhhcCCCCCchhcc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK--------------------LVLEYMPHGSLEKCL 463 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~--------------------Lv~ey~~~gsL~~~l 463 (639)
.+||.||++.. .++..||||++..... .....+..|+.+++. ++++|+.++++...+
T Consensus 13 G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~ 92 (292)
T d1unla_ 13 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFD 92 (292)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHH
T ss_pred CcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeecccccccccc
Confidence 46899999986 5688999999865432 234567778877543 578888888887766
Q ss_pred ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc---------
Q 041082 464 YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT--------- 534 (639)
Q Consensus 464 ~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~--------- 534 (639)
.. ...+++.....++.+++.||+||| ..+|+||||||+||+++.++.+|++|||.|+..........
T Consensus 93 ~~-~~~~~~~~~~~~~~q~~~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~ 168 (292)
T d1unla_ 93 SC-NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYR 168 (292)
T ss_dssp HT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGC
T ss_pred cc-ccccchhHHHHHHHHHHHHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchh
Confidence 53 345788889999999999999999 56899999999999999999999999999987754332100
Q ss_pred -------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHh----hC-CCC-----cceeeecc---cccc
Q 041082 535 -------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVND----LL-PIS-----VMEVVDVN---LLSM 585 (639)
Q Consensus 535 -------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~----~~-~~~-----~~~~~d~~---l~~~ 585 (639)
....+.++||| | ||+.|... +.+..++... .. +.. .....+.. ....
T Consensus 169 ~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (292)
T d1unla_ 169 PPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP----GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPA 244 (292)
T ss_dssp CHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC----CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCT
T ss_pred hhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC----CCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccc
Confidence 00123478999 7 88888642 1122222111 01 000 00000000 0000
Q ss_pred ccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...........-..+.++..+|++.+|++|||+.||++
T Consensus 245 ~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~ 282 (292)
T d1unla_ 245 TTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00000001111234567788999999999999999875
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.79 E-value=1.3e-19 Score=180.23 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=132.1
Q ss_pred CCcCcceEEEec-CCceeeeEEechhhhhhhhhHHHHHHHHH---------------------hhhhhcCCCCCchhccc
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQYERAFKSFDVACDMMK---------------------KLVLEYMPHGSLEKCLY 464 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~~~~~~~f~~e~~~~~---------------------~Lv~ey~~~gsL~~~l~ 464 (639)
.+||.||++... +|..+|||++..... ...+..|.+.++ .+|+||+ +|+|.+.+.
T Consensus 16 G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~ 92 (293)
T d1csna_ 16 GSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLD 92 (293)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHH
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHH
Confidence 579999999854 688999998754332 223444444432 2678988 579988887
Q ss_pred cCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-----CcceeeccccccccccccCCCc------
Q 041082 465 SSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-----NMVAHLSDFGMAKLLLKEDQSF------ 533 (639)
Q Consensus 465 ~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-----~~~~~i~dfgla~~~~~~~~~~------ 533 (639)
.....+++.++..++.+++.||+||| +.+|+||||||+||+++. ++.+|++|||+|+.........
T Consensus 93 ~~~~~~~~~~~~~i~~q~~~~l~~lH---~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~ 169 (293)
T d1csna_ 93 LCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE 169 (293)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCC
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHH---HCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecc
Confidence 65567899999999999999999999 778999999999999974 5679999999999865432110
Q ss_pred -cccccc---------------cccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccc
Q 041082 534 -TQNTNT---------------CHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDK 588 (639)
Q Consensus 534 -~~~~~~---------------~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 588 (639)
....+| .++|+| | ||+.|....... ...+.... +.+.......
T Consensus 170 ~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~--~~~~~~~~--------i~~~~~~~~~-- 237 (293)
T d1csna_ 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA--TNKQKYER--------IGEKKQSTPL-- 237 (293)
T ss_dssp CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC--CHHHHHHH--------HHHHHHHSCH--
T ss_pred cCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccch--hHHHHHHH--------HHhccCCCCh--
Confidence 000111 245665 4 555555421110 00000000 0000000000
Q ss_pred cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 041082 589 YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTRLLKIRD 630 (639)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~l~~~~~ 630 (639)
.+....+...+.+++..|+..+|++||++..+.+.++++.+
T Consensus 238 -~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~ 278 (293)
T d1csna_ 238 -RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 278 (293)
T ss_dssp -HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred -HHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence 00001123456778889999999999999999888877643
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.3e-20 Score=183.99 Aligned_cols=213 Identities=20% Similarity=0.211 Sum_probs=130.4
Q ss_pred CCcCcceEEEe-c-CCceeeeEEechhhh--hhhhhHHHHHHHHH----------------------------hhhhhcC
Q 041082 407 SGFGSIYKARI-Q-DGMKVAVKVFDLQYE--RAFKSFDVACDMMK----------------------------KLVLEYM 454 (639)
Q Consensus 407 ~g~g~vy~~~l-~-~g~~vavK~l~~~~~--~~~~~f~~e~~~~~----------------------------~Lv~ey~ 454 (639)
.+||.||++.. . ++..||||++..... .....+..|+..++ .+++||+
T Consensus 18 G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~ 97 (305)
T d1blxa_ 18 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 97 (305)
T ss_dssp ETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECC
T ss_pred ccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEec
Confidence 46899999985 3 367899999865332 12233444444422 2567888
Q ss_pred CCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCC--
Q 041082 455 PHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQS-- 532 (639)
Q Consensus 455 ~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~-- 532 (639)
.+|.+..........+++.....++.+++.||+||| ..+|+||||||+|||++.++.+||+|||+++........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~ 174 (305)
T d1blxa_ 98 DQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS 174 (305)
T ss_dssp SCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCC
T ss_pred cCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCC
Confidence 887665444444556889988999999999999999 667999999999999999999999999999876433211
Q ss_pred --cc----------ccccccccccc--c-------CCCCCCCccCCCccchHHHHHhhC-CCC--cc-eeeec--ccccc
Q 041082 533 --FT----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLL-PIS--VM-EVVDV--NLLSM 585 (639)
Q Consensus 533 --~~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~-~~~--~~-~~~d~--~l~~~ 585 (639)
.+ ....+.++||| | ||+.|....- ....+........ +.. .. ....+ .....
T Consensus 175 ~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (305)
T d1blxa_ 175 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS-DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSK 253 (305)
T ss_dssp CCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCC
T ss_pred cccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCC-HHHHHHHHHHhhCCCchhcccccccchhhhhccc
Confidence 00 01123389999 7 8998875321 1111111111111 000 00 00000 00000
Q ss_pred cc-ccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 ED-KYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~-~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
.. ............+.++..+|++.+|++|||+.|+++
T Consensus 254 ~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~ 292 (305)
T d1blxa_ 254 SAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292 (305)
T ss_dssp CCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00 000000111234567888999999999999999875
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.78 E-value=2.6e-19 Score=181.33 Aligned_cols=207 Identities=16% Similarity=0.236 Sum_probs=132.1
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHh-----------------------hhhhcCCCCCchhc
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKK-----------------------LVLEYMPHGSLEKC 462 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~-----------------------Lv~ey~~~gsL~~~ 462 (639)
.+||.||++.- ..|..||+|++.... .+.+..|+.+++. +||||+++|+|...
T Consensus 46 G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~ 122 (328)
T d3bqca1 46 GKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQL 122 (328)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGT
T ss_pred CcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHH
Confidence 46899999986 568999999986433 3455666665332 58999999998776
Q ss_pred cccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc-ceeeccccccccccccCCCc----c---
Q 041082 463 LYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM-VAHLSDFGMAKLLLKEDQSF----T--- 534 (639)
Q Consensus 463 l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~-~~~i~dfgla~~~~~~~~~~----~--- 534 (639)
.. .++......++.+|+.||+||| +.+|+||||||+|||++.++ .+|++|||+|+...+..... +
T Consensus 123 ~~----~l~e~~i~~i~~qil~aL~~LH---~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y 195 (328)
T d3bqca1 123 YQ----TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYF 195 (328)
T ss_dssp TT----SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGG
T ss_pred hc----CCCHHHHHHHHHHHHHHHHHHh---hcccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccc
Confidence 43 4888889999999999999999 67899999999999999654 68999999998775433210 0
Q ss_pred ---c-----cccccccccc--c-------CCCCCCCccCCCc------------cchHHHHHhhCCCC---cceeeeccc
Q 041082 535 ---Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGE------------MTLKSWVNDLLPIS---VMEVVDVNL 582 (639)
Q Consensus 535 ---~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~------------~~l~~~~~~~~~~~---~~~~~d~~l 582 (639)
. ...+.++|+| | +|+.|........ .....|........ ..+......
T Consensus 196 ~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (328)
T d3bqca1 196 KGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHS 275 (328)
T ss_dssp CCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCC
T ss_pred cCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhccccc
Confidence 0 0113367888 6 8888865321110 01112221111100 000000000
Q ss_pred cccccc--cccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 583 LSMEDK--YFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 583 ~~~~~~--~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
...... ........-..+.++..+|+..+|++|||+.|+++
T Consensus 276 ~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~ 318 (328)
T d3bqca1 276 RKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 318 (328)
T ss_dssp CCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 000000 00001112234677889999999999999999975
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.6e-19 Score=182.17 Aligned_cols=118 Identities=26% Similarity=0.354 Sum_probs=90.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh----------------------------hhhhcCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK----------------------------LVLEYMP 455 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~----------------------------Lv~ey~~ 455 (639)
.+||.||++.. .+|+.||||++..... .....+..|+.+++. +|+||++
T Consensus 21 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~ 100 (318)
T d3blha1 21 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 100 (318)
T ss_dssp CSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCC
T ss_pred CcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccC
Confidence 46899999986 5789999999865432 233456677766432 5678887
Q ss_pred CCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccc
Q 041082 456 HGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLK 528 (639)
Q Consensus 456 ~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~ 528 (639)
++.+..... ....++......|+.+++.||.||| +.+|+||||||+|||++.++.+|++|||+++....
T Consensus 101 ~~~~~~~~~-~~~~~~~~~~~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~ 169 (318)
T d3blha1 101 HDLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSL 169 (318)
T ss_dssp EEHHHHHTC-TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC
T ss_pred CCccchhhh-cccccccHHHHHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecceeeeccc
Confidence 765544333 3345777888899999999999999 67899999999999999999999999999986653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=6e-17 Score=165.01 Aligned_cols=136 Identities=27% Similarity=0.315 Sum_probs=104.0
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|||++++++. +|+. +++|++|+|++|+|+ .+|..+ .+|+.|++++|+++. ++. + .+.|++|+|+
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEECC
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--cccccccccc
Confidence 46789999999984 7754 468999999999998 678654 578999999998864 332 1 1469999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCC--CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQ--IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFD 204 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 204 (639)
+|.+.. +|. ++.+++|+.|++++|.++... .+.+..+.+..+... .+..+..++.++.+++++|.+..
T Consensus 107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp SSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred cccccc-ccc-hhhhccceeeccccccccccccccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 999984 453 678999999999999887653 457777777666553 23445667788888888877654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.76 E-value=2.8e-16 Score=159.96 Aligned_cols=283 Identities=25% Similarity=0.252 Sum_probs=175.1
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEec
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDL 155 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 155 (639)
.++++|||++|.++ .+|+. +++|++|++++|+++ .+|+.+ .+|+.|++++|+++. ++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence 46899999999998 58864 468999999999998 567654 578999999999873 332 1 246999999
Q ss_pred CCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCCCC
Q 041082 156 SHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSSTP 231 (639)
Q Consensus 156 s~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 231 (639)
++|.++.+ .+++|+.|++++|.+....+ ....+..+.+..+.... +..++.++.++.+.+++|.+...+.
T Consensus 106 ~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~ 179 (353)
T d1jl5a_ 106 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPD 179 (353)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred cccccccccchhhhccceeecccccccccccc----ccccccchhhccccccc--cccccccccceeccccccccccccc
Confidence 99999875 37899999999998874432 24567788887766543 3457889999999999998775432
Q ss_pred cchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCC
Q 041082 232 ELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLE 311 (639)
Q Consensus 232 ~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 311 (639)
... ....+...++.+. . ...+..++.|+.+++++|.... .|. ...++..+.+..+.+.
T Consensus 180 ~~~----------------~~~~l~~~~~~~~-~-~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~ 237 (353)
T d1jl5a_ 180 LPL----------------SLESIVAGNNILE-E-LPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT 237 (353)
T ss_dssp CCT----------------TCCEEECCSSCCS-S-CCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred ccc----------------ccccccccccccc-c-cccccccccccccccccccccc-ccc---cccccccccccccccc
Confidence 111 1112222222221 1 1123445555666666555432 221 1233444444444443
Q ss_pred CCCch---------------hhcC-CCCCcEEECCCCcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEE
Q 041082 312 GPIPY---------------EFCR-LASLYELDLSGNKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYL 375 (639)
Q Consensus 312 ~~~p~---------------~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 375 (639)
..... .+.. .......++..+.+.+ ....+++|++|++++|++..+ |. .+++|+.|
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L 309 (353)
T d1jl5a_ 238 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLIEL-PA---LPPRLERL 309 (353)
T ss_dssp CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCSCC-CC---CCTTCCEE
T ss_pred ccccccccccccccccccccccccccchhcccccccCcccc----ccccCCCCCEEECCCCccCcc-cc---ccCCCCEE
Confidence 21110 0000 0122333344443332 123356788888888887753 43 25677788
Q ss_pred EcccCCCCCCCccccccccccccccccCCCCCCcC
Q 041082 376 NLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSGFG 410 (639)
Q Consensus 376 ~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g~g 410 (639)
++++|+++ .+|.. +.+|+.|++++|++..++
T Consensus 310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~lp 340 (353)
T d1jl5a_ 310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLREFP 340 (353)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCC
T ss_pred ECCCCcCC-ccccc---cCCCCEEECcCCcCCCCC
Confidence 88888876 35532 346777888888887654
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.8e-19 Score=181.30 Aligned_cols=196 Identities=21% Similarity=0.273 Sum_probs=129.3
Q ss_pred CCcCcceEEEec----CCceeeeEEechhh----hhhhhhHHHHHHHHHh---------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARIQ----DGMKVAVKVFDLQY----ERAFKSFDVACDMMKK---------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~----~g~~vavK~l~~~~----~~~~~~f~~e~~~~~~---------------------Lv~ey~~~g 457 (639)
.+||.||++.-. .|..+|||.++... ......+..|+.+++. +++||+.+|
T Consensus 35 G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~ 114 (322)
T d1vzoa_ 35 GAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGG 114 (322)
T ss_dssp TTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSC
T ss_pred CCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeeccccc
Confidence 568999999742 47899999986432 1223345555555432 579999999
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--cc
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--TQ 535 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~~ 535 (639)
+|.+.+.... .+.......++.+++.|++|+| ..+|+||||||+||+++.++.+|++|||+|+.+....... +.
T Consensus 115 ~L~~~i~~~~-~~~e~~~~~~~~Qi~~al~~lH---~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~ 190 (322)
T d1vzoa_ 115 ELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 190 (322)
T ss_dssp BHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGG
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHHHHHhh---cCCEEeccCCccceeecCCCCEEEeeccchhhhccccccccccc
Confidence 9999886533 3556667888999999999999 6689999999999999999999999999998764332210 00
Q ss_pred ----------------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccc
Q 041082 536 ----------------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYF 590 (639)
Q Consensus 536 ----------------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 590 (639)
...+.++||| | ||+.|....... ......++...... +
T Consensus 191 ~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~-~~~~~i~~~~~~~~------~---------- 253 (322)
T d1vzoa_ 191 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAEISRRILKSE------P---------- 253 (322)
T ss_dssp GSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHHHHHHHHHCC------C----------
T ss_pred ccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcccCC------C----------
Confidence 0112367888 6 788886542111 11111111111000 0
Q ss_pred cchHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 041082 591 TTKKQCLSFVFNLAMECTAESPKQRIN-----AKESVT 623 (639)
Q Consensus 591 ~~~~~~~~~~~~l~~~C~~~~p~~RP~-----m~~v~~ 623 (639)
..+.++...+.++..+|++.+|++||+ +.|+.+
T Consensus 254 ~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~ 291 (322)
T d1vzoa_ 254 PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 291 (322)
T ss_dssp CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence 001122345677888999999999995 677764
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-20 Score=183.81 Aligned_cols=186 Identities=21% Similarity=0.196 Sum_probs=125.4
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhh------hhhhHHHHHHHHH----------------------hhhhhcCCC-
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYER------AFKSFDVACDMMK----------------------KLVLEYMPH- 456 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~------~~~~f~~e~~~~~----------------------~Lv~ey~~~- 456 (639)
.+||.||++.. .+|..+|||++...... ....+..|+.+++ .+|+||+.+
T Consensus 15 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~ 94 (273)
T d1xwsa_ 15 GGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPV 94 (273)
T ss_dssp ETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCc
Confidence 46899999986 46899999998654311 1122344555432 267888875
Q ss_pred CCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecC-CcceeeccccccccccccCCCc--
Q 041082 457 GSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGN-NMVAHLSDFGMAKLLLKEDQSF-- 533 (639)
Q Consensus 457 gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~-~~~~~i~dfgla~~~~~~~~~~-- 533 (639)
+++.+++.. ...+++.....++.++++||+||| +.+|+||||||+||+++. ++.+|++|||+|+.........
T Consensus 95 ~~l~~~~~~-~~~l~e~~~~~~~~qi~~al~~lH---~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~ 170 (273)
T d1xwsa_ 95 QDLFDFITE-RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD 170 (273)
T ss_dssp EEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCC
T ss_pred chHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccccCcccceEEecCCCeEEECccccceecccccccccc
Confidence 566666653 345899999999999999999999 678999999999999995 4799999999998765432210
Q ss_pred -cc-----------cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCCCcceeeeccccccccccccc
Q 041082 534 -TQ-----------NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPISVMEVVDVNLLSMEDKYFTT 592 (639)
Q Consensus 534 -~~-----------~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 592 (639)
+. ...+.++||| | ||+.|.... . +-.+... .+.+.
T Consensus 171 GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~---~i~~~~~------~~~~~----------- 226 (273)
T d1xwsa_ 171 GTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----E---EIIRGQV------FFRQR----------- 226 (273)
T ss_dssp SCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H---HHHHCCC------CCSSC-----------
T ss_pred cCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----h---HHhhccc------CCCCC-----------
Confidence 00 0012256787 6 777776421 0 0011000 00111
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 593 KKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 593 ~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
....+.+++.+|++.+|++|||+.|+++
T Consensus 227 ---~s~~~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 227 ---VSSECQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp ---CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---CCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 1123567888999999999999999976
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.9e-19 Score=180.67 Aligned_cols=209 Identities=22% Similarity=0.241 Sum_probs=130.3
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhh--hhhhhhHHHHHHHHHh--------------------------hhhhcCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQY--ERAFKSFDVACDMMKK--------------------------LVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~--~~~~~~f~~e~~~~~~--------------------------Lv~ey~~~g 457 (639)
.+||.||++.- ..|..+|||++.... ....+.+..|+++++. +||||+ ++
T Consensus 29 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~ 107 (346)
T d1cm8a_ 29 GAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GT 107 (346)
T ss_dssp ----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cc
Confidence 56899999985 468999999986432 2234456677777442 567777 34
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc--c-
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF--T- 534 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~--~- 534 (639)
++...... ..+++.....++.+++.||+||| +.+|+||||||+|||++.++.+|++|||+|+......... +
T Consensus 108 ~l~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~ 182 (346)
T d1cm8a_ 108 DLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTR 182 (346)
T ss_dssp EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCG
T ss_pred cHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccceeccCCccccccccc
Confidence 56555543 35899999999999999999999 6689999999999999999999999999998776443221 0
Q ss_pred -----c-----cccccccccc--c-------CCCCCCCccCCCccchHHHHHhhCCC--Ccceee-----------eccc
Q 041082 535 -----Q-----NTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWVNDLLPI--SVMEVV-----------DVNL 582 (639)
Q Consensus 535 -----~-----~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~~~~~~~--~~~~~~-----------d~~l 582 (639)
. ...+.++||| | +|+.|.... .....+.......... ...+.. .+..
T Consensus 183 ~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (346)
T d1cm8a_ 183 WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS-DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 261 (346)
T ss_dssp GGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCC
T ss_pred cccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC-ChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcc
Confidence 0 1123478998 7 888887532 1111111111111100 000000 0000
Q ss_pred cccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 041082 583 LSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVTR 624 (639)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~~ 624 (639)
.... ........-..+.++..+|+..+|++|||+.|+++.
T Consensus 262 ~~~~--~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H 301 (346)
T d1cm8a_ 262 EKKD--FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 301 (346)
T ss_dssp CCCC--GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred cccc--hHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 0000 000001111245678899999999999999999863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=4.1e-17 Score=155.72 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=23.2
Q ss_pred CCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCc
Q 041082 273 LTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLS 335 (639)
Q Consensus 273 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 335 (639)
+++|+.|++++|.+.+.. .+.++++|+.|++++|++++. + .++.+++|+.|++++|+++
T Consensus 150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt 208 (227)
T d1h6ua2 150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS 208 (227)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC
Confidence 344444444444443211 133344444444444444322 1 1333444444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=2.3e-17 Score=157.52 Aligned_cols=97 Identities=26% Similarity=0.358 Sum_probs=62.4
Q ss_pred EeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCc
Q 041082 58 NISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLT 137 (639)
Q Consensus 58 ~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 137 (639)
++..+.+++.+ .+..+.+|++|++++|.|+. + +.+..+++|+.|++++|++.+..| +..+++|+++++++|.++
T Consensus 25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~ 98 (227)
T d1h6ua2 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (227)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence 44444444432 23456677777777777764 4 346777777777777777765443 677777777777777776
Q ss_pred cccCccccCCCCCCEEecCCCCCCC
Q 041082 138 GTIHSSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 138 ~~~p~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
.. ..+..+++|+.++++.+...+
T Consensus 99 ~i--~~l~~l~~L~~l~l~~~~~~~ 121 (227)
T d1h6ua2 99 NV--SAIAGLQSIKTLDLTSTQITD 121 (227)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCC
T ss_pred cc--ccccccccccccccccccccc
Confidence 32 246667777777776666554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3e-17 Score=158.38 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=104.7
Q ss_pred EEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCC-ccccCCCCCcEEeccc-c
Q 041082 57 LNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIP-EELGNLAELETLWLQN-N 134 (639)
Q Consensus 57 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~-N 134 (639)
++.++.+++ .+|..+. +++++|+|++|.|+...+..|.++++|++|++++|.+...+| ..|.++++++++.+.. |
T Consensus 13 i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 13 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 445556666 5776664 589999999999986666678999999999999999877554 4688999999998764 7
Q ss_pred cCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCC
Q 041082 135 FLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLI 214 (639)
Q Consensus 135 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 214 (639)
++....+..|.++++|+.|++++|.++.... ...+..+..+..+...++.+....+..|..++
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-----------------~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~ 152 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----------------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 152 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSCCC-----------------CTTTCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred cccccccccccccccccccccchhhhccccc-----------------cccccccccccccccccccccccccccccccc
Confidence 8887888889999999999998888765320 01112233344444444444444444444443
Q ss_pred -CCCEEEccCCCCCC
Q 041082 215 -NLKRLNLYDNYLTS 228 (639)
Q Consensus 215 -~L~~L~Ls~N~l~~ 228 (639)
.++.|++++|+++.
T Consensus 153 ~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 153 FESVILWLNKNGIQE 167 (242)
T ss_dssp SSCEEEECCSSCCCE
T ss_pred ccceeeecccccccc
Confidence 45556666655543
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.5e-18 Score=173.89 Aligned_cols=206 Identities=19% Similarity=0.157 Sum_probs=125.4
Q ss_pred CCcCcceEEEec-CCceeeeEEechhh--hhhhhhHHHHHHHHH--------------------------hhhhhcCCCC
Q 041082 407 SGFGSIYKARIQ-DGMKVAVKVFDLQY--ERAFKSFDVACDMMK--------------------------KLVLEYMPHG 457 (639)
Q Consensus 407 ~g~g~vy~~~l~-~g~~vavK~l~~~~--~~~~~~f~~e~~~~~--------------------------~Lv~ey~~~g 457 (639)
.+||.||++... .|..+|||++.... ......+..|+.+++ .+|+||+.++
T Consensus 28 G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~ 107 (355)
T d2b1pa1 28 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN 107 (355)
T ss_dssp C--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEE
T ss_pred CcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchH
Confidence 468999999864 68999999986433 222334556666633 2688898765
Q ss_pred CchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCc----
Q 041082 458 SLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSF---- 533 (639)
Q Consensus 458 sL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~---- 533 (639)
.+. .+. ..+++.....++.+++.||+||| ..+|+||||||.||+++.++.++++|||+++.........
T Consensus 108 l~~-~~~---~~~~~~~i~~~~~qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~ 180 (355)
T d2b1pa1 108 LCQ-VIQ---MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV 180 (355)
T ss_dssp HHH-HHT---SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC---------------
T ss_pred HHH-hhh---cCCCHHHHHHHHHHHHHHHHHhh---hcccccccCCccccccccccceeeechhhhhccccccccccccc
Confidence 443 333 34789999999999999999999 6689999999999999999999999999988765432110
Q ss_pred c----------ccccccccccc--c-------CCCCCCCccCCCccch-----------HHHH-----------HhhCCC
Q 041082 534 T----------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTL-----------KSWV-----------NDLLPI 572 (639)
Q Consensus 534 ~----------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l-----------~~~~-----------~~~~~~ 572 (639)
+ ....+.++||| | +|+.|.... .....+ +++. ....+.
T Consensus 181 t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (355)
T d2b1pa1 181 TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR-DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259 (355)
T ss_dssp CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS-SHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCC
T ss_pred cccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC-CHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccc
Confidence 0 01123378898 6 888876421 000000 0111 000000
Q ss_pred C---cceeeeccccccccccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 573 S---VMEVVDVNLLSMEDKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 573 ~---~~~~~d~~l~~~~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
. ....+....... ...........+.++..+|++.+|++|||+.||++
T Consensus 260 ~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~ 310 (355)
T d2b1pa1 260 AGLTFPKLFPDSLFPA---DSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 310 (355)
T ss_dssp CCCCHHHHSCGGGSCC---SSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccccccccccccccc---cccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 0 000111111000 01112334556788999999999999999999984
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=4.3e-18 Score=158.04 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=109.1
Q ss_pred CCcCccceecCCCCCcEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccC-CccccCCcccceeeccCCcCCCCC
Q 041082 38 TVCHWTGVSCDVRSYRVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYFNNNTLFGEI 116 (639)
Q Consensus 38 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~ 116 (639)
+.|.|..|.|+ +++++ .+|..+. +++++|+|++|.|++.+ +..|.++++|+.|+|++|.+.+..
T Consensus 6 C~C~~~~v~Cs------------~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~ 70 (192)
T d1w8aa_ 6 CHCEGTTVDCT------------GRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70 (192)
T ss_dssp SEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC
T ss_pred CEEcCCEEEEe------------CCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc
Confidence 44556666665 44554 3555553 56777777777776533 455567777777777777777777
Q ss_pred CccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCC------CCCCccEEEccCCccCccCCccccCCC
Q 041082 117 PEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV------QIPNLENLLLWGNNFSGAIPHFIFNAS 190 (639)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~l~~L~~L~L~~N~l~~~~p~~~~~l~ 190 (639)
+..|..+++|++|+|++|+++...|..|.++++|++|+|++|.|+.+ .+++|++|+|++|.+....+..+. ..
T Consensus 71 ~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~ 149 (192)
T d1w8aa_ 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AE 149 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HH
T ss_pred ccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hh
Confidence 77777777777777777777766666777777777777777777653 256777777777776643322111 11
Q ss_pred CCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCCCC
Q 041082 191 KLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLTSS 229 (639)
Q Consensus 191 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 229 (639)
.++.+.+..|.+....|. .+..++.++|+.|.++..
T Consensus 150 ~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 150 WLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp HHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCC
T ss_pred hhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhCcCC
Confidence 234445556666555554 345566777888877654
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-18 Score=176.31 Aligned_cols=210 Identities=19% Similarity=0.217 Sum_probs=131.9
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhh--hhhhhHHHHHHHHHh-------------------------hhhhcCCCCC
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYE--RAFKSFDVACDMMKK-------------------------LVLEYMPHGS 458 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~--~~~~~f~~e~~~~~~-------------------------Lv~ey~~~gs 458 (639)
.+||.||++.- .+|..||||++..... ...+.+..|+++++. ++++|+.+|+
T Consensus 29 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~ 108 (348)
T d2gfsa1 29 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGAD 108 (348)
T ss_dssp GTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCc
Confidence 57999999984 5789999999864432 223456667776432 4578888999
Q ss_pred chhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeeccccccccccccCCCcc----
Q 041082 459 LEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLLKEDQSFT---- 534 (639)
Q Consensus 459 L~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~~~~~~~~---- 534 (639)
|.+++.. ..+++.....++.+++.||+||| ..+|+||||||+|||++.++.+|++|||+|...........
T Consensus 109 L~~~~~~--~~l~e~~~~~i~~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~ 183 (348)
T d2gfsa1 109 LNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRW 183 (348)
T ss_dssp HHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHH
T ss_pred hhhhccc--ccccHHHHHHHHHHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhcccCccccccccccc
Confidence 9998864 35899999999999999999999 66899999999999999999999999999986654332200
Q ss_pred ---------ccccccccccc--c-------CCCCCCCccCCCccchHHHH-HhhCCCC--cc--------eeeecccccc
Q 041082 535 ---------QNTNTCHHRIY--G-------TRRNPQMNFFSGEMTLKSWV-NDLLPIS--VM--------EVVDVNLLSM 585 (639)
Q Consensus 535 ---------~~~~~~~~dvy--G-------tg~~p~~~~~~~~~~l~~~~-~~~~~~~--~~--------~~~d~~l~~~ 585 (639)
....+.++|+| | ||+.|.... +......-+ ....... .. ......+...
T Consensus 184 y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (348)
T d2gfsa1 184 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 261 (348)
T ss_dssp TSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCC
T ss_pred ccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccC
Confidence 01123478999 7 888886531 111111111 1100000 00 0000000000
Q ss_pred ccccc-cchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 586 EDKYF-TTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 586 ~~~~~-~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..... ......-..+.++..+|++.+|++|||+.|+++
T Consensus 262 ~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~ 300 (348)
T d2gfsa1 262 PKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 300 (348)
T ss_dssp CCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence 00000 000011234667889999999999999999986
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-17 Score=158.05 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccC-ccccCCCCCCEEec
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIH-SSIFNLSSLSDLDL 155 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L 155 (639)
++++.+++.++ .+|..+. +++++|++++|++....+..|.++++|++|+|++|.+...++ ..|.++++++++.+
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence 46677776666 5665553 466777777777765555566777777777777776654433 34455544444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.8e-19 Score=185.89 Aligned_cols=348 Identities=19% Similarity=0.140 Sum_probs=197.2
Q ss_pred cEEEEEeCCCCCcccC-CcCCCCCCCCCEEeccCCcCCc----cCCccccCCcccceeeccCCcCCCC----CCcccc-C
Q 041082 53 RVTTLNISGLSLTSTI-PSELGNLSSLQTLDLSFNWFSG----SIPSSIFNMSSLLSIYFNNNTLFGE----IPEELG-N 122 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~ 122 (639)
+++.||++++++++.- ..-++.++++|+|+|++|.++. .++..+..+++|+.|+|++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 6899999999997521 2335678899999999999873 4456678899999999999988532 222332 2
Q ss_pred CCCCcEEecccccCccc----cCccccCCCCCCEEecCCCCCCCCC-----------CCCccEEEccCCccCccC----C
Q 041082 123 LAELETLWLQNNFLTGT----IHSSIFNLSSLSDLDLSHNNLTDVQ-----------IPNLENLLLWGNNFSGAI----P 183 (639)
Q Consensus 123 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----------l~~L~~L~L~~N~l~~~~----p 183 (639)
..+|++|+|++|+++.. ++..+..+++|++|+|++|.++... .............+.... -
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999999753 4556788999999999999886521 112233333333222110 0
Q ss_pred ccccCCCCCcEEEcccCCCcccC----cccc-CCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEee
Q 041082 184 HFIFNASKLSILELQKNSFFDLI----PNTF-GNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMF 258 (639)
Q Consensus 184 ~~~~~l~~L~~L~L~~N~l~~~~----p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~ 258 (639)
..+.....++.++++++...... ...+ ........+++..+.+...... ... ........++.+.+.
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~-------~~l~~~~~~~~l~~~ 234 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLC-------GIVASKASLRELALG 234 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHH-------HHHHHCTTCCEEECC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhh-ccc-------ccccccccccccchh
Confidence 11223456677777766553210 0001 1223455666666554321000 000 000112345566666
Q ss_pred cCccccc-----cchhhcCCCCCCEEECCCCCCCccc----cccccCCcCCcEEEccCCcCCCCCchh-----hcCCCCC
Q 041082 259 NCNISGG-----ILEEISNLTNLTAIYLAGNKLNGSI----PITLCKLQKLQLLSFVDNKLEGPIPYE-----FCRLASL 324 (639)
Q Consensus 259 ~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~~l~~L 324 (639)
.|.+... ..........++.+++++|.+.... ...+...+.++.+++++|.+....... ......|
T Consensus 235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L 314 (460)
T d1z7xw1 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 314 (460)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 6654321 1222334556777777777665322 122344566677777777664321111 1123467
Q ss_pred cEEECCCCcCcccCC----ccccCCCCCCEEeCCCCcCccc----chhhhh-cCCCCcEEEcccCCCCCC----Cccccc
Q 041082 325 YELDLSGNKLSGSIP----TCFGNQTSLRILSLDSNKLISI----IPSTLW-NLKDILYLNLSSNFFISP----LPLEIG 391 (639)
Q Consensus 325 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~----~p~~~~-~l~~L~~L~ls~N~l~~~----~p~~~~ 391 (639)
+.+++++|.++.... ..+....+|+.|+|++|++... ++..+. ..+.|++|++++|.++.. ++..+.
T Consensus 315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 394 (460)
T d1z7xw1 315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394 (460)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence 777777776654322 1223445677777777776542 222222 345577777777776532 333445
Q ss_pred cccccccccccCCCCCC
Q 041082 392 NLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 392 ~l~~L~~l~ls~N~l~g 408 (639)
..+.|+.||+++|+|+.
T Consensus 395 ~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 395 ANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HCCCCCEEECCSSSCCH
T ss_pred cCCCCCEEECCCCcCCH
Confidence 56677777777777764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.4e-16 Score=149.91 Aligned_cols=143 Identities=27% Similarity=0.431 Sum_probs=68.4
Q ss_pred CCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 75 LSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 75 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
+.+|++|++++|.+... + .+..+++|++|++++|++++.. .++.+++|++|++++|++++. | .+.++++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccc
Confidence 34455555555555432 1 2445555555555555554422 244555555555555555432 2 345555555555
Q ss_pred cCCCCCCCCC----CCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCCCCC
Q 041082 155 LSHNNLTDVQ----IPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDNYLT 227 (639)
Q Consensus 155 Ls~N~l~~~~----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 227 (639)
+++|.+..+. ++.++.+++++|.+++ +..+..+++|+.+++++|++++..+ ++++++|++|++++|+++
T Consensus 119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 119 LEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC
Confidence 5555444321 3444444444444432 1223344555555555555544322 445555555555555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.9e-16 Score=147.63 Aligned_cols=159 Identities=25% Similarity=0.387 Sum_probs=136.9
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
.++.|+++++.++... .+..+++|++|+|++|.+++. + .++.+++|+.|++++|++++ +| .+.++++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence 5788999999987543 478899999999999999864 3 47899999999999999976 44 58999999999999
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCC----CCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCcc
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDV----QIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPN 208 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 208 (639)
+|.+... ..+..+++|+.+++++|.+++. .+++|+.+++++|++++..+ +.++++|+.|++++|+++.+ |
T Consensus 121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l-~- 194 (210)
T d1h6ta2 121 HNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R- 194 (210)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-
T ss_pred ccccccc--cccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCC-h-
Confidence 9998743 4688999999999999999875 37899999999999986433 78899999999999999865 4
Q ss_pred ccCCCCCCCEEEccC
Q 041082 209 TFGNLINLKRLNLYD 223 (639)
Q Consensus 209 ~~~~l~~L~~L~Ls~ 223 (639)
.|..+++|++|+|++
T Consensus 195 ~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 195 ALAGLKNLDVLELFS 209 (210)
T ss_dssp GGTTCTTCSEEEEEE
T ss_pred hhcCCCCCCEEEccC
Confidence 589999999999974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=3.3e-16 Score=145.94 Aligned_cols=146 Identities=32% Similarity=0.465 Sum_probs=82.1
Q ss_pred cEEEEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecc
Q 041082 53 RVTTLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQ 132 (639)
Q Consensus 53 ~v~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 132 (639)
+++.|++++++++. + +.+..+++|++|+|++|++++..| +.++++|+.|++++|.+... | .+.+++.|+.|+++
T Consensus 41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLF 114 (199)
T ss_dssp TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccccc
Confidence 45566666666553 2 235556666666666666654322 56666666666666655432 2 25566666666666
Q ss_pred cccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCC
Q 041082 133 NNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGN 212 (639)
Q Consensus 133 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 212 (639)
+|.+... ..+..+++|+.|++++|.+..+ + .+..+++|+.|++++|++++.. .+++
T Consensus 115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-------------------~-~l~~~~~L~~L~l~~n~l~~l~--~l~~ 170 (199)
T d2omxa2 115 NNQITDI--DPLKNLTNLNRLELSSNTISDI-------------------S-ALSGLTSLQQLNFSSNQVTDLK--PLAN 170 (199)
T ss_dssp SSCCCCC--GGGTTCTTCSEEECCSSCCCCC-------------------G-GGTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred ccccccc--cccchhhhhHHhhhhhhhhccc-------------------c-cccccccccccccccccccCCc--cccC
Confidence 6665532 2345555555555555554432 2 3455566666666666665542 2566
Q ss_pred CCCCCEEEccCCCCCC
Q 041082 213 LINLKRLNLYDNYLTS 228 (639)
Q Consensus 213 l~~L~~L~Ls~N~l~~ 228 (639)
+++|++|++++|+++.
T Consensus 171 l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 171 LTTLERLDISSNKVSD 186 (199)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 6666666666666654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=6.7e-16 Score=143.83 Aligned_cols=175 Identities=29% Similarity=0.421 Sum_probs=118.5
Q ss_pred eCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcc
Q 041082 59 ISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTG 138 (639)
Q Consensus 59 L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 138 (639)
+..+.+++.++ ...+.++++|++++|.+.. + +.+..+++|++|++++|++++..| ++++++|++|++++|.+..
T Consensus 25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~ 98 (199)
T d2omxa2 25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 98 (199)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc
Confidence 33444444332 2345677778887777763 3 246667777777777777765433 6777777777777777653
Q ss_pred ccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccCccccCCCCCCCE
Q 041082 139 TIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKR 218 (639)
Q Consensus 139 ~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 218 (639)
. + .+.++++|+.|++++|.+. .. ..+..+++|+.|++++|++... +.+..+++|+.
T Consensus 99 ~-~-~l~~l~~L~~L~l~~~~~~------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~ 154 (199)
T d2omxa2 99 I-T-PLANLTNLTGLTLFNNQIT------------------DI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQ 154 (199)
T ss_dssp C-G-GGTTCTTCSEEECCSSCCC------------------CC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred c-c-ccccccccccccccccccc------------------cc--cccchhhhhHHhhhhhhhhccc--ccccccccccc
Confidence 3 2 3556666666665555443 22 2356788999999999998754 35889999999
Q ss_pred EEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccccchhhcCCCCCCEE
Q 041082 219 LNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGGILEEISNLTNLTAI 279 (639)
Q Consensus 219 L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L 279 (639)
|++++|++++.++ +.+ .++|+.|++++|++++ + +.++.+++|+.|
T Consensus 155 L~l~~n~l~~l~~-------l~~-------l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L 199 (199)
T d2omxa2 155 LNFSSNQVTDLKP-------LAN-------LTTLERLDISSNKVSD-I-SVLAKLTNLESL 199 (199)
T ss_dssp EECCSSCCCCCGG-------GTT-------CTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred cccccccccCCcc-------ccC-------CCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence 9999999987431 222 2478999999999886 3 357778888765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=2.1e-16 Score=146.36 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=113.6
Q ss_pred cEEEeecCcccccc-chhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCC
Q 041082 253 EVFSMFNCNISGGI-LEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSG 331 (639)
Q Consensus 253 ~~l~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 331 (639)
++|++++|.+++.+ +..|..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.+..|.+|.++++|+.|+|++
T Consensus 32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~ 111 (192)
T d1w8aa_ 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCC
Confidence 33444444443322 34567788899999999999888888888899999999999999988888899999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccccccccccccccccCCCCCC
Q 041082 332 NKLSGSIPTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLEIGNLKVLVGIDLSMNNFSG 408 (639)
Q Consensus 332 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~g 408 (639)
|+|+++.|..|..+++|++|+|++|.+....+..+ -...+..+.+..|.++...|..+ ..+..+|++.|.|..
T Consensus 112 N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC 184 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred ccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcC
Confidence 99998888899999999999999998876543221 11224445566777766666544 455677888888864
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.4e-18 Score=178.72 Aligned_cols=349 Identities=20% Similarity=0.205 Sum_probs=221.4
Q ss_pred CCCEEeccCCcCCccC-CccccCCcccceeeccCCcCCC----CCCccccCCCCCcEEecccccCccc----cCcccc-C
Q 041082 77 SLQTLDLSFNWFSGSI-PSSIFNMSSLLSIYFNNNTLFG----EIPEELGNLAELETLWLQNNFLTGT----IHSSIF-N 146 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~ 146 (639)
+|+.||+++|++++.. ..-+..+++++.|+|++|.++. .++..+..+++|++|+|++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 6899999999997531 3345678899999999998863 3455677899999999999998632 122222 3
Q ss_pred CCCCCEEecCCCCCCCC----------CCCCccEEEccCCccCccCCccc-----cCCCCCcEEEcccCCCcccC----c
Q 041082 147 LSSLSDLDLSHNNLTDV----------QIPNLENLLLWGNNFSGAIPHFI-----FNASKLSILELQKNSFFDLI----P 207 (639)
Q Consensus 147 l~~L~~L~Ls~N~l~~~----------~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~----p 207 (639)
..+|+.|+|++|.+++. ..++|++|+|++|.++......+ ...............+.... .
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 35799999999998752 36789999999998764321111 12233444444444332211 1
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCcchhhccccCCcchhhhccCccEEEeecCccccc----cchhhcCCCCCCEEECCC
Q 041082 208 NTFGNLINLKRLNLYDNYLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCNISGG----ILEEISNLTNLTAIYLAG 283 (639)
Q Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~ 283 (639)
..+.....++.++++.+...... ... .+..+.........+.+..+.+... ....+...+.++.+++++
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~--~~~-----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 235 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAG--VRV-----LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHH--HHH-----HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred ccccccccccccccccccccccc--ccc-----cccccccccccccccccccccccchhhhcccccccccccccccchhh
Confidence 12334577888998877653210 000 0011112223456677777765432 223345678899999999
Q ss_pred CCCCcc-----ccccccCCcCCcEEEccCCcCCCCC----chhhcCCCCCcEEECCCCcCcccCCcc-----ccCCCCCC
Q 041082 284 NKLNGS-----IPITLCKLQKLQLLSFVDNKLEGPI----PYEFCRLASLYELDLSGNKLSGSIPTC-----FGNQTSLR 349 (639)
Q Consensus 284 N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~l~~L~ 349 (639)
|.+... .+........++.+++++|.+.... ...+...+.++.+++++|.++...... ......|+
T Consensus 236 n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~ 315 (460)
T d1z7xw1 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 315 (460)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 976432 2333445678999999999886432 234566789999999999986432211 12346899
Q ss_pred EEeCCCCcCcccchhh----hhcCCCCcEEEcccCCCCCC----Cccccc-cccccccccccCCCCCCcCcceEEE-ecC
Q 041082 350 ILSLDSNKLISIIPST----LWNLKDILYLNLSSNFFISP----LPLEIG-NLKVLVGIDLSMNNFSGFGSIYKAR-IQD 419 (639)
Q Consensus 350 ~L~l~~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~~~----~p~~~~-~l~~L~~l~ls~N~l~g~g~vy~~~-l~~ 419 (639)
.+++++|.+....... +....+|++|+|++|++... ++..+. ....|+.|++++|+|+..|....+. +.
T Consensus 316 ~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~- 394 (460)
T d1z7xw1 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL- 394 (460)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred cccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh-
Confidence 9999999987654333 34567899999999998542 233333 3567999999999997633211111 11
Q ss_pred CceeeeEEechhhhh
Q 041082 420 GMKVAVKVFDLQYER 434 (639)
Q Consensus 420 g~~vavK~l~~~~~~ 434 (639)
....++.++++++.
T Consensus 395 -~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 395 -ANHSLRELDLSNNC 408 (460)
T ss_dssp -HCCCCCEEECCSSS
T ss_pred -cCCCCCEEECCCCc
Confidence 11246677777764
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=1.5e-15 Score=155.46 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=123.8
Q ss_pred CCcCcceEEEe-cCCceeeeEEechhhhhhhhhHHHHHHHHHhh---------------------------------hhh
Q 041082 407 SGFGSIYKARI-QDGMKVAVKVFDLQYERAFKSFDVACDMMKKL---------------------------------VLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l-~~g~~vavK~l~~~~~~~~~~f~~e~~~~~~L---------------------------------v~e 452 (639)
.+||.||++.. .+|..||||+++.... ....+..|+++++.+ +++
T Consensus 24 G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 102 (362)
T d1q8ya_ 24 GHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 102 (362)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeee
Confidence 46899999986 5789999999875432 223445555554332 111
Q ss_pred cCCCCCchhc-c-ccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCc------ceeeccccccc
Q 041082 453 YMPHGSLEKC-L-YSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNM------VAHLSDFGMAK 524 (639)
Q Consensus 453 y~~~gsL~~~-l-~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~------~~~i~dfgla~ 524 (639)
+...+..... . ......++......++.+++.||+|||+ ..+|+||||||+||+++.++ .++++|||.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~ 180 (362)
T d1q8ya_ 103 FEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC 180 (362)
T ss_dssp ECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCE
T ss_pred ecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccceeeEeeccccc
Confidence 1111111111 0 1123457778889999999999999995 35799999999999998654 48999999998
Q ss_pred cccccCCCc--cc----------cccccccccc--c-------CCCCCCCccCCC-----ccchHHHHHhhC--CCC---
Q 041082 525 LLLKEDQSF--TQ----------NTNTCHHRIY--G-------TRRNPQMNFFSG-----EMTLKSWVNDLL--PIS--- 573 (639)
Q Consensus 525 ~~~~~~~~~--~~----------~~~~~~~dvy--G-------tg~~p~~~~~~~-----~~~l~~~~~~~~--~~~--- 573 (639)
......... +. ...+.++|+| | ||+.|....... ...+..++...- +..
T Consensus 181 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 260 (362)
T d1q8ya_ 181 WYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLR 260 (362)
T ss_dssp ETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHH
T ss_pred ccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhh
Confidence 654433211 00 0113378999 6 898886532111 011112111110 000
Q ss_pred ----cceeeec-----cccccc--------cccccchHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 041082 574 ----VMEVVDV-----NLLSME--------DKYFTTKKQCLSFVFNLAMECTAESPKQRINAKESVT 623 (639)
Q Consensus 574 ----~~~~~d~-----~l~~~~--------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP~m~~v~~ 623 (639)
..+.++. .+.... .............+.++..+|++.+|++|||+.||++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~ 327 (362)
T d1q8ya_ 261 NGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 327 (362)
T ss_dssp HCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred cccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000000 000000 0011122455667889999999999999999999875
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5e-14 Score=119.67 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=80.3
Q ss_pred EEEeCCCCCcccCCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEeccccc
Q 041082 56 TLNISGLSLTSTIPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNF 135 (639)
Q Consensus 56 ~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (639)
.|+|++|+++. ++ .++++++|++|++++|.|+ .+|..|+.+++|+.|++++|.++.. | .+..+++|++|++++|+
T Consensus 2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 58888888873 44 4788888889999988887 5777888888888888888888754 4 48888888888888888
Q ss_pred CccccC-ccccCCCCCCEEecCCCCCCC
Q 041082 136 LTGTIH-SSIFNLSSLSDLDLSHNNLTD 162 (639)
Q Consensus 136 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 162 (639)
++.... ..+..+++|++|++++|.++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 875432 467778888888888887764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.5e-14 Score=129.27 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCC
Q 041082 71 ELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSL 150 (639)
Q Consensus 71 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 150 (639)
.+.++..|++|+|++|+|+ .+|..+..+++|+.|+|++|.+... +.|..+++|++|+|++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence 3556777888888888887 4566667788888888888888743 347888888888888888886666556677788
Q ss_pred CEEecCCCCCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC---ccccCCCCCCCEEEc
Q 041082 151 SDLDLSHNNLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI---PNTFGNLINLKRLNL 221 (639)
Q Consensus 151 ~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L 221 (639)
+.|++++|.|+.+. . -..+..+++|+.|++++|.++... +..+..+++|++||-
T Consensus 90 ~~L~L~~N~i~~~~----------------~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 90 TELILTNNSLVELG----------------D-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CEEECCSCCCCCGG----------------G-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccceeccccccccc----------------c-ccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 88888777776431 0 023445566777777777665432 124566777777763
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=1.7e-13 Score=116.31 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=88.0
Q ss_pred CEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCC
Q 041082 79 QTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHN 158 (639)
Q Consensus 79 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 158 (639)
|+|+|++|+++ .+| .+..+++|++|++++|++. .+|..|+.+++|++|++++|+++.. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 68999999998 455 5899999999999999997 4677899999999999999999854 4 4888888888888888
Q ss_pred CCCCCCCCCccEEEccCCccCccCCccccCCCCCcEEEcccCCCcccC---ccccCCCCCCCEE
Q 041082 159 NLTDVQIPNLENLLLWGNNFSGAIPHFIFNASKLSILELQKNSFFDLI---PNTFGNLINLKRL 219 (639)
Q Consensus 159 ~l~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L 219 (639)
.|+.+. ....+..+++|+.|++++|.++... ...+..+++|+.+
T Consensus 76 ~i~~~~-----------------~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQQSA-----------------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCCSSS-----------------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCC-----------------CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 777532 1123455667777777777765432 2223345666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.4e-14 Score=139.02 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=41.5
Q ss_pred CCEEeccCCcCCccCCccccCCcccceeeccCCcCCCC-CCccccCCCCCcEEecccccCccccCccccCCCCCCEEecC
Q 041082 78 LQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGE-IPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLS 156 (639)
Q Consensus 78 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 156 (639)
+..+.++...+...+ .......+|++|+++++.+... ++..+..+++|++|+|++|.++...+..+..+++|++|+++
T Consensus 25 ~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 25 VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp CSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 344555444443222 2223444566666666555432 23335566666666666666655555555566666666665
Q ss_pred C
Q 041082 157 H 157 (639)
Q Consensus 157 ~ 157 (639)
+
T Consensus 104 ~ 104 (284)
T d2astb2 104 G 104 (284)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-13 Score=134.54 Aligned_cols=224 Identities=20% Similarity=0.240 Sum_probs=95.1
Q ss_pred ceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEecCCCCCCCCCCCCccEEEccCCccCccC
Q 041082 103 LSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLDLSHNNLTDVQIPNLENLLLWGNNFSGAI 182 (639)
Q Consensus 103 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~l~~L~~L~L~~N~l~~~~ 182 (639)
++||++++.+.......+.. ..+..+.++...+..... ......+|++|||+++.++. ..+
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~-----------------~~l 63 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV-----------------STL 63 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECH-----------------HHH
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCH-----------------HHH
Confidence 35677766653222222111 123445555444432221 22233455555555554432 112
Q ss_pred CccccCCCCCcEEEcccCCCcccCccccCCCCCCCEEEccCC-CCCCCCCcchhhccccCCcchhhhccCccEEEeecCc
Q 041082 183 PHFIFNASKLSILELQKNSFFDLIPNTFGNLINLKRLNLYDN-YLTSSTPELSFLYSLSNCKYLEQSSQSLEVFSMFNCN 261 (639)
Q Consensus 183 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~l~~l~~~~~~l~~l~l~~n~ 261 (639)
+..+..+++|+.|+++++.+.+..+..++.+++|++|+++++ .++.. . +..+....++|++|++++|.
T Consensus 64 ~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~----~-------l~~l~~~~~~L~~L~ls~c~ 132 (284)
T d2astb2 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----A-------LQTLLSSCSRLDELNLSWCF 132 (284)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----H-------HHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc----c-------cchhhHHHHhcccccccccc
Confidence 233444555555555555555444445555556666666553 22210 0 00011112344444444432
Q ss_pred -cccc-cchhhc-CCCCCCEEECCCC--CCCcc-ccccccCCcCCcEEEccCC-cCCCCCchhhcCCCCCcEEECCCC-c
Q 041082 262 -ISGG-ILEEIS-NLTNLTAIYLAGN--KLNGS-IPITLCKLQKLQLLSFVDN-KLEGPIPYEFCRLASLYELDLSGN-K 333 (639)
Q Consensus 262 -l~~~-~~~~~~-~l~~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~ 333 (639)
++.. +...+. ..+.|+.|+++++ .++.. +...+..+++|+.|++++| .+++.....+..+++|++|+++++ .
T Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~ 212 (284)
T d2astb2 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212 (284)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred ccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCC
Confidence 2111 111121 2245555555543 12211 1112233455555555543 244334444455555555555552 3
Q ss_pred CcccCCccccCCCCCCEEeCCCC
Q 041082 334 LSGSIPTCFGNQTSLRILSLDSN 356 (639)
Q Consensus 334 l~~~~p~~~~~l~~L~~L~l~~N 356 (639)
+++.....++.+++|+.|+++++
T Consensus 213 i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 213 IIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CChHHHHHHhcCCCCCEEeeeCC
Confidence 44333344455555555555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.40 E-value=2.6e-14 Score=145.05 Aligned_cols=91 Identities=21% Similarity=0.135 Sum_probs=48.1
Q ss_pred CCCCCCCCCEEeccCCcCCcc----CCccccCCcccceeeccCCcCCCC----------CCccccCCCCCcEEecccccC
Q 041082 71 ELGNLSSLQTLDLSFNWFSGS----IPSSIFNMSSLLSIYFNNNTLFGE----------IPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 71 ~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l 136 (639)
.+.+.+.|+.|+|++|.+... +-..+...+.|+.|+++++..... +...+...++|+.|+|++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 345566677777777766431 223345556666666665543211 112234456666666666666
Q ss_pred ccc----cCccccCCCCCCEEecCCCCCC
Q 041082 137 TGT----IHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 137 ~~~----~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
... +...+...++|++|++++|.++
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 134 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred ccccccchhhhhcccccchheeccccccc
Confidence 432 2223334556666666666543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.7e-13 Score=120.98 Aligned_cols=128 Identities=21% Similarity=0.177 Sum_probs=82.7
Q ss_pred hcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCCCCCC
Q 041082 270 ISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQTSLR 349 (639)
Q Consensus 270 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 349 (639)
+.+...+++|+|++|+|+. ++..+..+++|+.|++++|+++.. ..|..+++|+.|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 3455667777777777764 355556677777777777777643 2366677777777777777765555566677777
Q ss_pred EEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCCCC---cccccccccccccc
Q 041082 350 ILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFISPL---PLEIGNLKVLVGID 400 (639)
Q Consensus 350 ~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~---p~~~~~l~~L~~l~ 400 (639)
.|++++|++..... ..+..+++|+++++++|+++... +..+..+++|+.||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77777777765432 34666777777777777664422 12345556665554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=2e-13 Score=138.31 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=50.7
Q ss_pred cCCCCCCEEECCCCCCCcc-----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCcccCCcc
Q 041082 271 SNLTNLTAIYLAGNKLNGS-----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGSIPTC 341 (639)
Q Consensus 271 ~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 341 (639)
...+.|+.|++++|.+... +...+..+++|+.|++++|.+... +...+..+++|+.|+|++|.+++.-...
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 3445566666666655421 122234445555555555554321 2233444555555555555554321111
Q ss_pred ----cc--CCCCCCEEeCCCCcCcccc----hhhhh-cCCCCcEEEcccCCC
Q 041082 342 ----FG--NQTSLRILSLDSNKLISII----PSTLW-NLKDILYLNLSSNFF 382 (639)
Q Consensus 342 ----~~--~l~~L~~L~l~~N~l~~~~----p~~~~-~l~~L~~L~ls~N~l 382 (639)
+. ...+|+.|++++|.+...- ...+. +.+.|+.|++++|.+
T Consensus 263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 11 1234555566555554321 11121 344555555555554
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.32 E-value=7.2e-13 Score=122.01 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=74.8
Q ss_pred CCcCcceEEEecCCceeeeEEechhhhhh------------------hhhHHHHHHHHH----------------hhhhh
Q 041082 407 SGFGSIYKARIQDGMKVAVKVFDLQYERA------------------FKSFDVACDMMK----------------KLVLE 452 (639)
Q Consensus 407 ~g~g~vy~~~l~~g~~vavK~l~~~~~~~------------------~~~f~~e~~~~~----------------~Lv~e 452 (639)
.++|.||++...+|..+|||++....... ......+...+. .++||
T Consensus 11 G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~~~~lvme 90 (191)
T d1zara2 11 GKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWEGNAVLME 90 (191)
T ss_dssp CSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEecCCEEEEE
Confidence 46899999998889999999875432110 011112222221 14566
Q ss_pred cCCCCCchhccccCCccCCHHHHHHHHHHHHHhhhhhhccCCCCeEeecCCCCceeecCCcceeecccccccccc
Q 041082 453 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVALALEYLHFGYSTPIIHCDLKLSNVLLGNNMVAHLSDFGMAKLLL 527 (639)
Q Consensus 453 y~~~gsL~~~l~~~~~~l~~~~~~~i~~~ia~~l~~lh~~~~~~i~h~dlk~~nill~~~~~~~i~dfgla~~~~ 527 (639)
|++++.+.+ ++.....+++.++++|++||| ..+|+||||||.|||++++ .+++.|||+|+...
T Consensus 91 ~~~~~~~~~--------l~~~~~~~i~~ql~~~l~~lH---~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~ 153 (191)
T d1zara2 91 LIDAKELYR--------VRVENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVG 153 (191)
T ss_dssp CCCCEEGGG--------CCCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEETT-EEEECCCTTCEETT
T ss_pred eeccccccc--------hhhHHHHHHHHHHHHHHHHHh---hCCEEEccCChhheeeeCC-CEEEEECCCcccCC
Confidence 666543322 333334678999999999999 5689999999999999965 48899999998654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=4.4e-14 Score=130.79 Aligned_cols=90 Identities=28% Similarity=0.345 Sum_probs=55.4
Q ss_pred CCcCCCCCCCCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCccccCccccCC
Q 041082 68 IPSELGNLSSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNL 147 (639)
Q Consensus 68 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 147 (639)
+|.+++.|++|++|+|++|.|+. ++ .+..+++|+.|++++|.+. .+|..+..+++|++|++++|+++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 34456677777777777777763 43 4667777777777777765 3444444455677777777776643 235555
Q ss_pred CCCCEEecCCCCCCC
Q 041082 148 SSLSDLDLSHNNLTD 162 (639)
Q Consensus 148 ~~L~~L~Ls~N~l~~ 162 (639)
++|+.|+|++|.|+.
T Consensus 115 ~~L~~L~L~~N~i~~ 129 (198)
T d1m9la_ 115 VNLRVLYMSNNKITN 129 (198)
T ss_dssp HHSSEEEESEEECCC
T ss_pred ccccccccccchhcc
Confidence 555555555555543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.6e-11 Score=108.43 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=81.9
Q ss_pred EeCCCCCcccCCcCCCCCCCCCEEeccCC-cCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccC
Q 041082 58 NISGLSLTSTIPSELGNLSSLQTLDLSFN-WFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFL 136 (639)
Q Consensus 58 ~L~~~~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 136 (639)
+.++++++ ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+++...|..|..+++|++|+|++|+|
T Consensus 14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 92 (156)
T d2ifga3 14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (156)
T ss_dssp ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence 33344444 45777889999999999766 58877777899999999999999999988889999999999999999999
Q ss_pred ccccCccccCCCCCCEEecCCCCCC
Q 041082 137 TGTIHSSIFNLSSLSDLDLSHNNLT 161 (639)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 161 (639)
+...++.| ...+|+.|+|++|.+.
T Consensus 93 ~~l~~~~~-~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 93 ESLSWKTV-QGLSLQELVLSGNPLH 116 (156)
T ss_dssp SCCCSTTT-CSCCCCEEECCSSCCC
T ss_pred cccChhhh-ccccccccccCCCccc
Confidence 85544444 4446888888888774
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3e-11 Score=106.71 Aligned_cols=85 Identities=21% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCCCEEeccCCcCCccCCccccCCcccceeeccCCc-CCCCCCccccCCCCCcEEecccccCccccCccccCCCCCCEEe
Q 041082 76 SSLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNT-LFGEIPEELGNLAELETLWLQNNFLTGTIHSSIFNLSSLSDLD 154 (639)
Q Consensus 76 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 154 (639)
.....++.+++.+. ..|..+..+++|+.|++++|+ +....+..|.++++|+.|+|++|+|+.+.|..|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34456777777776 467777777888888886554 6665566777788888888888877776666677766666666
Q ss_pred cCCCCCC
Q 041082 155 LSHNNLT 161 (639)
Q Consensus 155 Ls~N~l~ 161 (639)
|++|+|+
T Consensus 87 Ls~N~l~ 93 (156)
T d2ifga3 87 LSFNALE 93 (156)
T ss_dssp CCSSCCS
T ss_pred ccCCCCc
Confidence 6665554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.07 E-value=1.6e-12 Score=120.04 Aligned_cols=114 Identities=23% Similarity=0.257 Sum_probs=82.1
Q ss_pred cchhhcCCCCCCEEECCCCCCCccccccccCCcCCcEEEccCCcCCCCCchhhcCCCCCcEEECCCCcCcccCCccccCC
Q 041082 266 ILEEISNLTNLTAIYLAGNKLNGSIPITLCKLQKLQLLSFVDNKLEGPIPYEFCRLASLYELDLSGNKLSGSIPTCFGNQ 345 (639)
Q Consensus 266 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 345 (639)
++..+..+++|+.|+|++|+|+. ++ .+..+++|+.|++++|+++. +|..+..+++|+.|++++|.++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence 34567777888888888888874 33 47777888888888888763 455555566788888888887753 236677
Q ss_pred CCCCEEeCCCCcCcccch-hhhhcCCCCcEEEcccCCCCC
Q 041082 346 TSLRILSLDSNKLISIIP-STLWNLKDILYLNLSSNFFIS 384 (639)
Q Consensus 346 ~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~ 384 (639)
++|++|++++|+++.... ..+..+++|+.|++++|++..
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 788888888888776533 457778888888888887644
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=6.5e-08 Score=85.31 Aligned_cols=81 Identities=25% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCCEEeccCCcCCccCCccccCCcccceeeccCCcCCCCCCccccCCCCCcEEecccccCcccc--CccccCCCCCCEEe
Q 041082 77 SLQTLDLSFNWFSGSIPSSIFNMSSLLSIYFNNNTLFGEIPEELGNLAELETLWLQNNFLTGTI--HSSIFNLSSLSDLD 154 (639)
Q Consensus 77 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~ 154 (639)
..+.|+++++... ..+..+..+..++...+.. ..++..+..+++|++|+|++|+|+... +..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 3455666554422 1233444444444443322 233444456677777777777776432 23455566666666
Q ss_pred cCCCCCCC
Q 041082 155 LSHNNLTD 162 (639)
Q Consensus 155 Ls~N~l~~ 162 (639)
|++|.|+.
T Consensus 98 Ls~N~i~~ 105 (162)
T d1koha1 98 LSGNELKS 105 (162)
T ss_dssp CTTSCCCC
T ss_pred cccCcccc
Confidence 66666665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=8.8e-08 Score=84.45 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=55.6
Q ss_pred CchhhcCCCCCcEEECCCCcCcccC--CccccCCCCCCEEeCCCCcCcccchhhhhcCCCCcEEEcccCCCCCCCccc--
Q 041082 314 IPYEFCRLASLYELDLSGNKLSGSI--PTCFGNQTSLRILSLDSNKLISIIPSTLWNLKDILYLNLSSNFFISPLPLE-- 389 (639)
Q Consensus 314 ~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 389 (639)
++..+..+++|+.|+|++|+|+... +..+..+++|+.|++++|.+....+-.+.....|+.+++++|++.......
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence 3445556777777777777777542 344566777777788888777765544555556777777777776544321
Q ss_pred -----ccccccccccc
Q 041082 390 -----IGNLKVLVGID 400 (639)
Q Consensus 390 -----~~~l~~L~~l~ 400 (639)
+..+++|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 34556666654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.31 E-value=0.00011 Score=64.18 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=39.3
Q ss_pred CCCCCEEeccCC-cCCcc----CCccccCCcccceeeccCCcCCCC----CCccccCCCCCcEEecccccCcccc----C
Q 041082 75 LSSLQTLDLSFN-WFSGS----IPSSIFNMSSLLSIYFNNNTLFGE----IPEELGNLAELETLWLQNNFLTGTI----H 141 (639)
Q Consensus 75 l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p 141 (639)
.++|++|+|+++ .+... +-..+...+.|+.|+|++|.+... +...+...+.|+.|+|++|.++..- -
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 455666666653 33311 112233444555555555554321 1122334455666666666654321 1
Q ss_pred ccccCCCCCCEEecCCCCC
Q 041082 142 SSIFNLSSLSDLDLSHNNL 160 (639)
Q Consensus 142 ~~~~~l~~L~~L~Ls~N~l 160 (639)
..+...++|++|+|++|.+
T Consensus 94 ~aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HHTTTTCCCSEEECCCCSS
T ss_pred HHHHhCCcCCEEECCCCcC
Confidence 2234445555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.11 E-value=0.00031 Score=61.16 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=30.6
Q ss_pred cCCcCCcEEEccCCcCCC----CCchhhcCCCCCcEEECCCCcCcccC----CccccCCCCCCEEeCCCCcCc
Q 041082 295 CKLQKLQLLSFVDNKLEG----PIPYEFCRLASLYELDLSGNKLSGSI----PTCFGNQTSLRILSLDSNKLI 359 (639)
Q Consensus 295 ~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~ 359 (639)
...+.|+.|++++|.+.. .+...+...+.|+.|+|++|.++..- -..+...++|+.|++++|.+.
T Consensus 41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence 334445555555555431 11223333455666666666554321 122344455666666655443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.68 E-value=0.0014 Score=56.77 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=7.9
Q ss_pred cCCCCCCCEEEccCC
Q 041082 210 FGNLINLKRLNLYDN 224 (639)
Q Consensus 210 ~~~l~~L~~L~Ls~N 224 (639)
+...++|+.|+++.+
T Consensus 128 L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 128 LEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHCSSCCEEECCCS
T ss_pred HHhCCCcCEEeCcCC
Confidence 334555666665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.62 E-value=0.0025 Score=55.08 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=48.1
Q ss_pred CCCCCCEEECCC-CCCCcc----ccccccCCcCCcEEEccCCcCCCC----CchhhcCCCCCcEEECCCCcCccc----C
Q 041082 272 NLTNLTAIYLAG-NKLNGS----IPITLCKLQKLQLLSFVDNKLEGP----IPYEFCRLASLYELDLSGNKLSGS----I 338 (639)
Q Consensus 272 ~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 338 (639)
+.+.|++|++++ +.++.. +-..+...++|+.|++++|.+... +...+...++++.+++++|.+... +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 445666666665 334321 112233445555666665555322 112233445566666666555421 1
Q ss_pred CccccCCCCCCEEeC--CCCcCcc----cchhhhhcCCCCcEEEcccC
Q 041082 339 PTCFGNQTSLRILSL--DSNKLIS----IIPSTLWNLKDILYLNLSSN 380 (639)
Q Consensus 339 p~~~~~l~~L~~L~l--~~N~l~~----~~p~~~~~l~~L~~L~ls~N 380 (639)
-..+...++|+.++| ++|.+.. .+...+...+.|+.|+++.+
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 123344455554433 3344432 12223334455555555443
|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Type IIIa 3',5"-aminoglycoside phosphotransferase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.16 E-value=0.12 Score=47.31 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.5
Q ss_pred eEeecCCCCceeecCCcceeecccccccc
Q 041082 497 IIHCDLKLSNVLLGNNMVAHLSDFGMAKL 525 (639)
Q Consensus 497 i~h~dlk~~nill~~~~~~~i~dfgla~~ 525 (639)
++|+|+.+.||+++++...-|.||+.+..
T Consensus 185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T d1j7la_ 185 FSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp EECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred EEEeeccCcceeecCCceEEEeechhccc
Confidence 78999999999999887777999988763
|