Citrus Sinensis ID: 041101

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSSRGSNPSIEHPSFDSNYGYIAQNAPLMQPIGNSFAKRPKAKNLITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKENEDCEKDNEEMKSFKLDEIHEGTSTTYLPASEHNKSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
cccHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEcccEEcccccccccEEEHHHHHHHHHHccccHHHHHccccccHHHHHHccccccccccccccccEEEcccccccccccccccccccccccEEEEccccccEEcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEc
cccHHHHHHHHHHHcccccccEEEEEEEccccccEEEEcccccccccccccEEEEEEcccccEEEcccccccccccccccHHHHHHHcccccccccccccEEEEEccccEEEEccccccHHHHHccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEc
MRDLEKAVEWLrpfvdskawdYCVVWKlgddpsrfIEWLgcccsggvgggfEYVKVKeesgeeqkfsfcrdahLKHSARTKACEALaqlpsfmdlysgihgevvitnqpkwislanssdsiashqsnstRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTsieqrvvpagssydvgldEKCLDILLKEnlqnfpsplqlltfvpgtqvlsaatrfnthpynegssrgsnpsiehpsfdsnygyiaqnaplmqpignsfakrpkaknliternRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKENEDCEKDNEEMKSfkldeihegtsttylpasehnksfpacgekgksEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
MRDLEKAVEwlrpfvdskawdyCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRfnthpynegssrgsnpSIEHPSFDSNYGYIAQNAPLMQPIGNSFAKRpkaknliternrrnklkdglFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKEnedcekdneemksfkldeihegtsttylpasehnkSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIdanvttfngkvlnilrvq
MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLgcccsggvgggFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSSRGSNPSIEHPSFDSNYGYIAQNAPLMQPIGNSFAKRPKAKNLITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQdelkenedcekdneeMKSFKLDEIHEGTSTTYLPASEHNKSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
******AVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKE******KFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLA*************TRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRF*************************YGYIAQ*****************************KLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEV********************************************************VRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILR**
*****KA**WLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSG**********************************TKACEALAQLPSFMDLYSGIHGEVVITNQPKWISL***************RVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTH**********************************************************LKDGLFALRALVPKISKMDRAAILGDAAEYIKELL*************************************************************VEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANS*********NSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHP**********PSIEHPSFDSNYGYIAQNAPLMQPIGNSFAKRPKAKNLITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKENEDCEKDNEEMKSFKLDEIHEGTSTTYLPASEHNKSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
****EKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPG***********************************************************K*LITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELK**********************************************SEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
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MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSSRGSNPSIEHPSFDSNYGYIAQNAPLMQPIGNSFAKRPKAKNLITERNRRNKLKDGLFALRALVPKISKMDRAAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKDNEEMKSFKLDEIHEGTSTTYLPASEHNKSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q0WNR2441 Transcription factor bHLH yes no 0.914 0.897 0.380 8e-71
Q9ZVX2571 Transcription factor ABOR no no 0.963 0.730 0.350 1e-70
Q9LPW3450 Transcription factor SCRE no no 0.348 0.335 0.369 9e-21
Q9LSE2494 Transcription factor ICE1 no no 0.369 0.323 0.392 1e-20
Q2HIV9248 Transcription factor bHLH no no 0.378 0.661 0.288 1e-18
Q9T072328 Transcription factor bHLH no no 0.332 0.439 0.343 2e-15
Q700E3263 Transcription factor bHLH no no 0.348 0.574 0.260 3e-15
Q0V7X4318 Transcription factor FER- no no 0.346 0.471 0.290 8e-14
O81900207 Transcription factor DYSF no no 0.355 0.743 0.331 4e-12
Q9LSL1351 Transcription factor bHLH no no 0.138 0.170 0.616 2e-11
>sp|Q0WNR2|BH090_ARATH Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1 Back     alignment and function desciption
 Score =  268 bits (684), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 172/452 (38%), Positives = 244/452 (53%), Gaps = 56/452 (12%)

Query: 1   MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEE- 59
           MR  E+  E+LRPFVDS+ WD CV+WKLGDDPSRFIEW+GCCCSG        ++  EE 
Sbjct: 4   MRGGERVKEFLRPFVDSRTWDLCVIWKLGDDPSRFIEWVGCCCSGCYIDKNIKLENSEEG 63

Query: 60  -SGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSS 118
            +G ++K SFCRD H KH  RT ACEAL++ P FM LY GIHGEVV++  PKW  L NS 
Sbjct: 64  GTGRKKKASFCRDDHNKHRIRTLACEALSRFPLFMPLYPGIHGEVVMSKSPKW--LVNSG 121

Query: 119 DSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQ--------RV 170
             +   +  STRVL+PV  GL+ELFA      D++++ L+++ C T  E         R+
Sbjct: 122 SKM---EMFSTRVLVPVSDGLVELFAFDMRPFDESMVHLIMSRCTTFFEPFPEQRLQFRI 178

Query: 171 VP-AGSSYDVGLDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSS 229
           +P A  S   G++                    L    P    +       T        
Sbjct: 179 IPRAEESMSSGVNLSVEGGGSSSVSNPSSETQNLFGNYPNASCVEILREEQT-------- 230

Query: 230 RGSNPSIEHPSFDSNYGYIAQNA------PLMQPIGNSFAKRPKAKNLITERNRRNKLKD 283
               P +     +     + QNA        + P  N      K+KNL +ER RR ++  
Sbjct: 231 ----PCL---IMNKEKDVVVQNANDSKANKKLLPTENF-----KSKNLHSERKRRERINQ 278

Query: 284 GLFALRALVPKISKMDRAAILGDAAEYIKELLQEVDKLQDELKE-NE-DCEKDNEEMKSF 341
            ++ LRA+VPKI+K+++  I  DA +YI ELL E  KL+DELK  NE +C++   E +S 
Sbjct: 279 AMYGLRAVVPKITKLNKIGIFSDAVDYINELLVEKQKLEDELKGINEMECKEIAAEEQSA 338

Query: 342 KLDEIHEGTSTTYLPASEHNKSFPACGEKGKSEVRVEVNQINDRDFLIKLLCEHERGGFL 401
             D   E  S      S+ NK         K+EV++EV++  +RDFLI+++ EH++ GF 
Sbjct: 339 IADPEAERVS------SKSNKRVK------KNEVKIEVHETGERDFLIRVVQEHKQDGFK 386

Query: 402 RLMEAINSLELQVIDANVTTFNGKVLNILRVQ 433
           RL+EA++  EL++ID N T  +  V+ +L V+
Sbjct: 387 RLIEAVDLCELEIIDVNFTRLDLTVMTVLNVK 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2 Back     alignment and function description
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1 Back     alignment and function description
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1 Back     alignment and function description
>sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2 Back     alignment and function description
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1 Back     alignment and function description
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1 Back     alignment and function description
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
359473220481 PREDICTED: transcription factor bHLH90-l 0.960 0.864 0.505 1e-116
255568802472 hypothetical protein RCOM_0528090 [Ricin 0.972 0.891 0.529 1e-107
356524045496 PREDICTED: transcription factor bHLH90-l 0.928 0.810 0.445 1e-92
449521094473 PREDICTED: transcription factor ABORTED 0.979 0.896 0.419 3e-82
307135974474 bHLH transcription factor [Cucumis melo 0.976 0.892 0.415 5e-82
449434929473 PREDICTED: transcription factor ABORTED 0.979 0.896 0.417 2e-81
27650307 564 bHLH transcription factor [Brassica napu 0.963 0.739 0.352 2e-72
297744597 573 unnamed protein product [Vitis vinifera] 0.974 0.736 0.374 8e-72
145335373441 transcription factor bHLH90 [Arabidopsis 0.914 0.897 0.380 5e-69
297832282 571 hypothetical protein ARALYDRAFT_480571 [ 0.965 0.732 0.346 8e-69
>gi|359473220|ref|XP_003631270.1| PREDICTED: transcription factor bHLH90-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/479 (50%), Positives = 298/479 (62%), Gaps = 63/479 (13%)

Query: 1   MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEES 60
           MR LEKA+EWLRP V+ K WDYCVVWKLGDDPSRF+EW+ CCC    GGG+    VK E 
Sbjct: 1   MRGLEKAMEWLRPLVEKKTWDYCVVWKLGDDPSRFVEWMDCCC----GGGYGLANVKVER 56

Query: 61  GEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDS 120
             +     CRD + +H  RT+ACEALAQ PSFM LYSGIHGEVV++ QP+W+S   + DS
Sbjct: 57  EGQHLPPLCRDRYSQHPVRTRACEALAQFPSFMPLYSGIHGEVVVSTQPRWLSHGTALDS 116

Query: 121 IASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIEQRVVPAGSSYDVG 180
             SH+   T+VLIPV GGLIELF AKH+ KDQNII+ V A C+ S+EQ V    S   V 
Sbjct: 117 NLSHEFVGTQVLIPVVGGLIELFIAKHVPKDQNIIDFVKAQCHISLEQEVRSCNS---VS 173

Query: 181 LDEKCLDILLKENLQNFPSPLQLLTFVPGTQVLSAATRFNTHPYNEGSSRGSNPSIEHPS 240
            +E  LD LL +   N P PL  L+ +   Q L  AT+ +     EGSS  S+   EHPS
Sbjct: 174 PNENSLDPLLGKYADNLPPPLLHLSSILQLQFLPPATQPSMLCGFEGSSNVSDRLNEHPS 233

Query: 241 FDSNYGYIAQNAPLMQPI-GNSFA-----------------------------------K 264
            DS+     ++  L +PI  +SF+                                   +
Sbjct: 234 LDSSSCLAPRHKSLKRPIEKSSFSTDHHYNETLLKQQLGLGLGLVSATPMVEKENEKARQ 293

Query: 265 RPKA-----KNLITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELLQEVD 319
           +P++     KNLITERNRRN++KDGLF LRALVPKISKMDRA+ILGDA +YI EL QEV 
Sbjct: 294 KPESEQYHSKNLITERNRRNRIKDGLFTLRALVPKISKMDRASILGDAIQYIVELQQEVK 353

Query: 320 KLQDELK-ENEDCEKDNEEMKSFKLDEIHEGTSTTYLPA-SEHNKSFPACGEKGKSE--- 374
           KLQDE+  E EDC   + E+K           S+ Y PA +EHN+   +  EK + E   
Sbjct: 354 KLQDEVNMEQEDCNMKDAELKR----------SSRYSPATTEHNRGSSSIREKKQIESQR 403

Query: 375 VRVEVNQINDRDFLIKLLCEHERGGFLRLMEAINSLELQVIDANVTTFNGKVLNILRVQ 433
           V+VEV  I  R+FL+KLLCE +RGGF RLMEAIN L LQV+DAN+TTFNG VLNI RV+
Sbjct: 404 VQVEVKLIGTREFLLKLLCEQKRGGFARLMEAINVLGLQVVDANITTFNGNVLNIFRVE 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568802|ref|XP_002525372.1| hypothetical protein RCOM_0528090 [Ricinus communis] gi|223535335|gb|EEF37010.1| hypothetical protein RCOM_0528090 [Ricinus communis] Back     alignment and taxonomy information
>gi|356524045|ref|XP_003530643.1| PREDICTED: transcription factor bHLH90-like [Glycine max] Back     alignment and taxonomy information
>gi|449521094|ref|XP_004167566.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135974|gb|ADN33833.1| bHLH transcription factor [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449434929|ref|XP_004135248.1| PREDICTED: transcription factor ABORTED MICROSPORES-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|27650307|emb|CAD54298.1| bHLH transcription factor [Brassica napus] Back     alignment and taxonomy information
>gi|297744597|emb|CBI37859.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|145335373|ref|NP_172531.2| transcription factor bHLH90 [Arabidopsis thaliana] gi|122229969|sp|Q0WNR2.1|BH090_ARATH RecName: Full=Transcription factor bHLH90; AltName: Full=Basic helix-loop-helix protein 90; Short=AtbHLH90; Short=bHLH 90; AltName: Full=Transcription factor EN 50; AltName: Full=bHLH transcription factor bHLH090 gi|110738624|dbj|BAF01237.1| putative bHLH transcription factor bHLH090 [Arabidopsis thaliana] gi|332190488|gb|AEE28609.1| transcription factor bHLH90 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832282|ref|XP_002884023.1| hypothetical protein ARALYDRAFT_480571 [Arabidopsis lyrata subsp. lyrata] gi|297329863|gb|EFH60282.1| hypothetical protein ARALYDRAFT_480571 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2020003441 AT1G10610 "AT1G10610" [Arabido 0.374 0.367 0.491 2e-65
TAIR|locus:2039445 571 AMS "AT2G16910" [Arabidopsis t 0.362 0.274 0.392 1.1e-62
UNIPROTKB|Q6YUS3 552 OSJNBb0088N06.15 "BHLH protein 0.138 0.108 0.583 5.5e-38
UNIPROTKB|Q2R3F6524 Os11g0523700 "Helix-loop-helix 0.392 0.324 0.389 1.2e-18
TAIR|locus:2090847494 ICE1 "AT3G26744" [Arabidopsis 0.394 0.346 0.365 3.3e-17
TAIR|locus:2062225305 AT2G22750 "AT2G22750" [Arabido 0.346 0.491 0.312 1e-14
TAIR|locus:2137574328 AT4G37850 "AT4G37850" [Arabido 0.332 0.439 0.331 1.3e-12
TAIR|locus:2026629596 EGL3 "AT1G63650" [Arabidopsis 0.390 0.283 0.259 1.4e-12
UNIPROTKB|Q7XKP5293 OSJNBb0013O03.11 "OSJNBb0013O0 0.140 0.208 0.491 2.7e-12
TAIR|locus:504954829637 GL3 "AT5G41315" [Arabidopsis t 0.374 0.254 0.245 3.8e-12
TAIR|locus:2020003 AT1G10610 "AT1G10610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 404 (147.3 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 83/169 (49%), Positives = 108/169 (63%)

Query:     1 MRDLEKAVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLXXXXXXXXXXXFEYVKVKEE- 59
             MR  E+  E+LRPFVDS+ WD CV+WKLGDDPSRFIEW+              ++  EE 
Sbjct:     4 MRGGERVKEFLRPFVDSRTWDLCVIWKLGDDPSRFIEWVGCCCSGCYIDKNIKLENSEEG 63

Query:    60 -SGEEQKFSFCRDAHLKHSARTKACEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSS 118
              +G ++K SFCRD H KH  RT ACEAL++ P FM LY GIHGEVV++  PKW  L NS 
Sbjct:    64 GTGRKKKASFCRDDHNKHRIRTLACEALSRFPLFMPLYPGIHGEVVMSKSPKW--LVNSG 121

Query:   119 DSIASHQSNSTRVLIPVFGGLIELFAAKHISKDQNIIELVLAHCNTSIE 167
               +   +  STRVL+PV  GL+ELFA      D++++ L+++ C T  E
Sbjct:   122 SKM---EMFSTRVLVPVSDGLVELFAFDMRPFDESMVHLIMSRCTTFFE 167
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2039445 AMS "AT2G16910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YUS3 OSJNBb0088N06.15 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q2R3F6 Os11g0523700 "Helix-loop-helix DNA-binding domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2090847 ICE1 "AT3G26744" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062225 AT2G22750 "AT2G22750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137574 AT4G37850 "AT4G37850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKP5 OSJNBb0013O03.11 "OSJNBb0013O03.11 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WNR2BH090_ARATHNo assigned EC number0.38050.91450.8979yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 2e-23
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-11
smart0035353 smart00353, HLH, helix loop helix domain 2e-11
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-09
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 21/166 (12%)

Query: 11  LRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQK----- 65
           L+  V+S+ W Y + W+L  D S  + W     +G +        V EE G ++K     
Sbjct: 5   LQALVESEQWSYAIFWQLSPDQSGVLGWGDGYYNGEIKTR---KTVAEELGLQRKKVLRE 61

Query: 66  ----FSFCRDAHLKHSARTKACE--ALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSD 119
                S  RDA           E   L  +        G+ G+   +    W+S AN  D
Sbjct: 62  LYSLLSGSRDAAALSPEDLTDTEWFYLVSMTFSFPPGEGLPGKAFASGSHIWLSGANELD 121

Query: 120 SIAS-----HQSNS--TRVLIPVFGGLIELFAAKHISKDQNIIELV 158
           S         QS    T V IPV GG++EL + + I +D N+++ V
Sbjct: 122 SSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQHV 167

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.28
smart0035353 HLH helix loop helix domain. 99.26
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.26
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 99.12
KOG1318411 consensus Helix loop helix transcription factor EB 98.58
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.13
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.09
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.03
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.97
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.96
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.9
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.89
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.81
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.61
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.54
KOG0561 373 consensus bHLH transcription factor [Transcription 97.44
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.2
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.19
PLN0321793 transcription factor ATBS1; Provisional 97.19
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.17
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.06
KOG4029228 consensus Transcription factor HAND2/Transcription 96.93
PRK05007884 PII uridylyl-transferase; Provisional 96.31
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.24
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.2
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 95.91
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.84
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.82
PRK03059856 PII uridylyl-transferase; Provisional 95.71
PRK04374869 PII uridylyl-transferase; Provisional 95.67
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 95.58
PRK03381774 PII uridylyl-transferase; Provisional 95.31
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.18
PRK05092931 PII uridylyl-transferase; Provisional 95.09
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 94.97
PRK03381 774 PII uridylyl-transferase; Provisional 94.48
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.12
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.09
PRK01759 854 glnD PII uridylyl-transferase; Provisional 94.08
KOG3910632 consensus Helix loop helix transcription factor [T 93.83
PRK0019490 hypothetical protein; Validated 93.75
PRK05007 884 PII uridylyl-transferase; Provisional 93.64
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 93.56
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.5
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 93.48
PRK03059 856 PII uridylyl-transferase; Provisional 93.11
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 92.71
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 92.67
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 92.63
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 92.1
PRK05092 931 PII uridylyl-transferase; Provisional 92.08
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 92.07
PRK04374 869 PII uridylyl-transferase; Provisional 91.85
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 91.11
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 90.55
cd0211660 ACT ACT domains are commonly involved in specifica 90.39
PRK04435147 hypothetical protein; Provisional 89.76
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 89.58
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 89.55
KOG4447173 consensus Transcription factor TWIST [Transcriptio 89.17
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 89.16
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 88.99
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 88.55
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 88.48
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 87.82
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 86.82
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 85.68
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 85.35
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 84.99
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 84.84
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 84.83
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 84.67
PRK08577136 hypothetical protein; Provisional 84.28
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 83.55
KOG3898254 consensus Transcription factor NeuroD and related 82.51
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 82.08
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=1.9e-42  Score=315.87  Aligned_cols=151  Identities=25%  Similarity=0.353  Sum_probs=114.2

Q ss_pred             HHHHHHhccCCCCCeEEEEeeeCCCCCceEEEcCccccCCCCCCcceeecccccccccc--cc-ccccccccCcccchh-
Q 041101            7 AVEWLRPFVDSKAWDYCVVWKLGDDPSRFIEWLGCCCSGGVGGGFEYVKVKEESGEEQK--FS-FCRDAHLKHSARTKA-   82 (433)
Q Consensus         7 Lq~~Lr~l~~~~~W~YavFW~~~~~~~~~L~W~dg~c~~~~~~~~~~~~~~~~~~~~~~--~~-~~~d~~~~~~~~~~~-   82 (433)
                      |||+||+||++.+|+||||||+++++ ++|+||||||+|........ +..+..+.+++  ++ ++.+.. .++.++.. 
T Consensus         1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~-~~L~W~DG~~~g~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~-~~~~~v~~~   77 (163)
T PF14215_consen    1 LQQRLRSLVENSQWTYAVFWKLSPDN-SVLVWGDGYCNGPKETRKNG-EEEQEQRSKVLRELHSSFSSYA-LSPEEVTDT   77 (163)
T ss_pred             ChHHHHHHhCCCCCcEEEEeEEcCCC-CeeeEcceeecCCcccccch-hhccchhhhHHHHHhhhccccc-cccchhHHH
Confidence            79999999999999999999999995 79999999999876521111 11111111111  11 111111 12213322 


Q ss_pred             -hhHhhccceeeecCCCcceeEeecCCceeeecCCCCccccc-------ccCCceEEEEeeCCceEeeccccccccChHH
Q 041101           83 -CEALAQLPSFMDLYSGIHGEVVITNQPKWISLANSSDSIAS-------HQSNSTRVLIPVFGGLIELFAAKHISKDQNI  154 (433)
Q Consensus        83 -~~~l~~m~~~f~~g~Gl~Gk~~~sg~h~Wi~~~~~~~~~~~-------~~gIqTiv~IPv~~GVveLGS~~~i~Ed~~~  154 (433)
                       +||+.+|+++|  |+|+|||||++|+|+||++++....+.+       .+||||||||||++|||||||+++|+||+++
T Consensus        78 e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~GVvELGSt~~I~Ed~~~  155 (163)
T PF14215_consen   78 EWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNGVVELGSTEKIPEDSNL  155 (163)
T ss_pred             HHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCCEEEeeeeeeeccCHHH
Confidence             67899998888  9999999999999999999985433332       2789999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 041101          155 IELVLAHC  162 (433)
Q Consensus       155 v~~vk~~f  162 (433)
                      |++||++|
T Consensus       156 v~~vk~~F  163 (163)
T PF14215_consen  156 VQRVKSLF  163 (163)
T ss_pred             HHHHHhhC
Confidence            99999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 4e-14
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 5e-14
1hlo_A80 Protein (transcription factor MAX); transcriptiona 5e-13
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 1e-12
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-09
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1a0a_A63 BHLH, protein (phosphate system positive regulator 5e-04
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 274 ERNRRNKLKDGLFALRALVPKI---SKMDRAAILGDAAEYIKELLQEVDKLQDELKENED 330
           ER RRN+LK   FALR  +P++    K  +  IL  A  YI  +  E  KL     E + 
Sbjct: 14  ERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS---EEDL 70

Query: 331 CEKDNEEMK 339
             K  E++K
Sbjct: 71  LRKRREQLK 79
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.59
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.49
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.49
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.46
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.44
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.43
4ati_A118 MITF, microphthalmia-associated transcription fact 99.42
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.41
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.41
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.33
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.28
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.03
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.01
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.77
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.56
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.52
4ath_A83 MITF, microphthalmia-associated transcription fact 98.23
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.92
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 95.65
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 95.0
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 94.31
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 94.08
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 93.69
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 93.41
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 93.35
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 93.34
1vhm_A195 Protein YEBR; structural genomics, unknown functio 93.32
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 92.55
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 92.02
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 91.95
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 91.92
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 91.22
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 91.17
2nyi_A195 Unknown protein; protein structure initiative, PSI 90.32
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 89.43
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 88.05
2qyb_A181 Membrane protein, putative; GAF domain, domain of 86.48
1u8s_A192 Glycine cleavage system transcriptional repressor, 86.15
3hcy_A151 Putative two-component sensor histidine kinase PR; 84.27
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 80.64
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.59  E-value=1.2e-15  Score=122.99  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=61.5

Q ss_pred             CccccchHHHHHHHHHHHHhHHHHHhcCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 041101          265 RPKAKNLITERNRRNKLKDGLFALRALVPKI-SKMDRAAILGDAAEYIKELLQEVDKLQDELKENED  330 (433)
Q Consensus       265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~~-~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~~  330 (433)
                      ..+..|+.+||+||++||++|..|+++||.. .|+||++||.+||+||++|+.+++.|+.+.+.+..
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999986 89999999999999999999999999999887654
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 2e-13
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 8e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-12
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-12
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 6e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 4e-11
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-10
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-09
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 264 KRPKAKNLITERNRRNKLKDGLFALRALVPKIS---KMDRAAILGDAAEYIKELLQEVDK 320
            + +  N++ ER RRN+LK   FALR  +P++    K  +  IL  A  YI  +  E  K
Sbjct: 5   VKRRTHNVL-ERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63

Query: 321 LQDEL----KENEDCEKDNEEMKS 340
           L  E     K  E  +   E++  
Sbjct: 64  LISEEDLLRKRREQLKHKLEQLGG 87
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.44
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.42
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.4
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.32
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.31
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.16
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 95.71
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 94.19
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 93.71
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 93.54
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 91.8
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 90.87
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 89.35
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 89.14
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=113.45  Aligned_cols=65  Identities=25%  Similarity=0.383  Sum_probs=59.7

Q ss_pred             CccccchHHHHHHHHHHHHhHHHHHhcCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041101          265 RPKAKNLITERNRRNKLKDGLFALRALVPK-ISKMDRAAILGDAAEYIKELLQEVDKLQDELKENE  329 (433)
Q Consensus       265 ~~~~~h~~~Er~RR~~~n~~~~~LrslvP~-~~k~dkasil~~ai~YI~~Lq~~v~~L~~~~~~~~  329 (433)
                      ..+..|+.+||+||++||+.|..|++|||. ..|++|++||.+||+||+.|+++++.|..+...+.
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999998 56999999999999999999999999998887654
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure