Citrus Sinensis ID: 041140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MTNGDDEGVVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL
Secondary Structure (PSIPRED)
ccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccHHHHHccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHHHccccccEEEcccccccccccHHHccccccccEEEEcccccccccccccccccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
mtngddegvvlstatfgfhgfdEFGELLALANIKigycngsayIGCIQSEREALLRFKQDLkdpanrlalwsdgncctwagvvcndstghvlelrlgnpflhddepfwledykDETSKLIgkinpslldlKHLVYLELsnnnfekaqlpvflgsmgslrhidlsraeftgmipyqlgnlsnlqyldlssqiplsflylenlswlsglsllkhldltgvdlstASDWFLVTNMLPSLQVLKLSACslhnslpelpianfsslytldlsynefdntl
Flexible Loop (DISEMBL)
MTNGDDEGVVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL
Low Complexity Region (SEG)
MTNGDDEGVVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYlenlswlsglsllkhldlTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL
Disordered region (IsUnstruct)
********VVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN******
Disordered Region (DISOPRED)
**********LSTATFGFHGFDEFGELLALANIKIGYCNGSAYI*CIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD***
Disordered Region (DISEMBL)
********VVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL
Disordered Region (DISPRO)
****DDEGVVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNGDDEGVVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.821	0.266	0.313	2e-14
Q9LRT1	1016	Probably inactive leucine	no	no	0.734	0.198	0.313	3e-13
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.705	0.188	0.329	8e-13
Q00874	372	DNA-damage-repair/tolerat	no	no	0.767	0.567	0.3	8e-13
Q05091	330	Polygalacturonase inhibit	N/A	no	0.8	0.666	0.301	9e-13
Q9C9N5	685	Probable inactive leucine	no	no	0.698	0.280	0.314	2e-11
Q8W4S5	614	Probable LRR receptor-lik	no	no	0.534	0.239	0.329	5e-11
Q42371	976	LRR receptor-like serine/	no	no	0.734	0.206	0.292	8e-11
C0LGF4	591	LRR receptor-like serine/	no	no	0.498	0.231	0.325	1e-10
O82318	960	Probably inactive leucine	no	no	0.632	0.181	0.303	2e-10

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 117/265 (44%), Gaps = 39/265 (14%)

Query: 46  CIQSEREALLRFKQDLKDPAN-------RLALWSDGNCCTWAGVVCNDSTGHVLELRLGN 98
           C   +R+ALL F+ +    A+       R       +CC W GV CND +G V+ L + N
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 99  PFLHD-----DEPFWLEDYKD---ETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV 150
            FL++        F L+  +        L G+I  SL +L HL  + L  N F   ++P 
Sbjct: 94  TFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKF-VGEIPA 152

Query: 151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-----QIPLSFLYLENL---- 201
            +G++  LRH+ L+    TG IP  LGNLS L  L+L S     +IP S   L+ L    
Sbjct: 153 SIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLS 212

Query: 202 -----------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL 250
                      S L  LS L HL LT   L    +       L  L+V+     SL  ++
Sbjct: 213 LASNNLIGEIPSSLGNLSNLVHLVLTHNQL--VGEVPASIGNLIELRVMSFENNSLSGNI 270

Query: 251 PELPIANFSSLYTLDLSYNEFDNTL 275
           P +  AN + L    LS N F +T 
Sbjct: 271 P-ISFANLTKLSIFVLSSNNFTSTF 294

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 108/246 (43%), Gaps = 44/246 (17%)

Query: 53  ALLRFKQDLKDPANRLALWS--DGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLE 110
            L+ FK DL DP + L  W+  D   C+W+ V CN  T  V+EL L              
Sbjct: 39  GLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSL-------------- 84

Query: 111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG 170
               +   L GKIN  +  L+ L  L LSNNNF        L +   L+ +DLS    +G
Sbjct: 85  ----DGLALTGKINRGIQKLQRLKVLSLSNNNFTGNI--NALSNNNHLQKLDLSHNNLSG 138

Query: 171 MIPYQLGNLSNLQYLDLSSQ-------------------IPLSFLYLENL--SWLSGLSL 209
            IP  LG++++LQ+LDL+                     + LS  +LE    S L   S+
Sbjct: 139 QIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSV 198

Query: 210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           L  L+L+    S    +      L  L+ L LS+ SL  S+P L I +  +L  L L  N
Sbjct: 199 LNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIP-LGILSLHNLKELQLQRN 257

Query: 270 EFDNTL 275
           +F   L
Sbjct: 258 QFSGAL 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 108/234 (46%), Gaps = 40/234 (17%)

Query: 49  SEREALLRFKQDLKDPANRLALW---------SDGNCCTWAGVVCNDSTGHVLELRLGNP 99
           SE+E LL FK DL DP+N L  W         S+   C W GV C D+ G+V +L L N 
Sbjct: 29  SEQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHC-DANGYVAKLLLSN- 86

Query: 100 FLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLR 159
                              L G ++  +     L  L+LSNN FE + LP  L ++ SL+
Sbjct: 87  -----------------MNLSGNVSDQIQSFPSLQALDLSNNAFE-SSLPKSLSNLTSLK 128

Query: 160 HIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG-- 217
            ID+S   F G  PY LG  + L +++ SS     FL  +    L   + L+ LD  G  
Sbjct: 129 VIDVSVNSFFGTFPYGLGMATGLTHVNASSNNFSGFLPED----LGNATTLEVLDFRGGY 184

Query: 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
            + S  S +      L +L+ L LS  +    +P++ I   SSL T+ L YN F
Sbjct: 185 FEGSVPSSF----KNLKNLKFLGLSGNNFGGKVPKV-IGELSSLETIILGYNGF 233

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 29/240 (12%)

Query: 46  CIQSEREALLRFKQDLKDPA-NRLALWSDG-NCCT-WAGVVCNDSTGHVLELRLGNPFLH 102
           C   ++ AL  FK  L +P       WS+  +CC  W G+ C+  +G V ++ L      
Sbjct: 27  CSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGE--S 84

Query: 103 DDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162
           +D  F        +  + G I+P++ DL  L  L L++      ++P  + S+ SLR +D
Sbjct: 85  EDAIF---QKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILD 141

Query: 163 LSRAEFTGMIPYQLGNLSNLQYLDL-----SSQIPLSFLYLENLSWLSGLSLLKHLDLT- 216
           L+  + TG IP ++G LS L  L+L     S +IP S         L+ L  LKHL+LT 
Sbjct: 142 LAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPAS---------LTSLIELKHLELTE 192

Query: 217 -GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            G+     +D+      L  L  + L    L  S+PE  I+    L  LDLS N  +  +
Sbjct: 193 NGITGVIPADF----GSLKMLSRVLLGRNELTGSIPE-SISGMERLADLDLSKNHIEGPI 247

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 32/252 (12%)

Query: 46  CIQSEREALLRFKQDLKDPANRLALW-SDGNCCTWAGVVCNDSTGHVLELRLGN------ 98
           C   +++ LL+ K+   DP   LA W SD +CC W  V C+ +T  +  L +        
Sbjct: 27  CNPDDKKVLLQIKKAFGDPY-VLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQ 85

Query: 99  -PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGS 157
            P L  D P+       +   L G I P++  LK L  L LS  N     +P FL  + +
Sbjct: 86  IPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLS-GSVPDFLSQLKN 144

Query: 158 LRHIDLSRAEFTGMIPYQLGNLSNLQYL-----DLSSQIPLSF---------LYLENLSW 203
           L  +DLS    TG IP  L  L NL  L      L+  IP+SF         LYL + + 
Sbjct: 145 LTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSH-NQ 203

Query: 204 LSG--LSLLKHLDLTGVDLST---ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
           LSG   +    +D T +DLS      D  ++  +  + Q++ LS   L  +L ++     
Sbjct: 204 LSGNIPTSFAQMDFTSIDLSRNKLEGDASVIFGLNKTTQIVDLSRNLLEFNLSKVEFP-- 261

Query: 259 SSLYTLDLSYNE 270
           +SL +LD+++N+
Sbjct: 262 TSLTSLDINHNK 273

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 40/232 (17%)

Query: 53  ALLRFKQDLKDPANRLAL-W--SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWL 109
           ALL FKQ +++ ++ +   W  SD N C+W GV CN     V+ +RL N           
Sbjct: 28  ALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYDM-RVVSIRLPN----------- 75

Query: 110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT 169
                   +L G ++PS+  L  L ++ L +N+F+  +LPV L  +  L+ + LS   F+
Sbjct: 76  -------KRLSGSLDPSIGSLLSLRHINLRDNDFQ-GKLPVELFGLKGLQSLVLSGNSFS 127

Query: 170 GMIPYQLGNLSNLQYLDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224
           G +P ++G+L +L  LDLS       I LS +  + L  L    +L     +G DL T  
Sbjct: 128 GFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKKLKTL----VLSKNSFSG-DLPTG- 181

Query: 225 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY-TLDLSYNEFDNTL 275
              L +N++  L+ L LS   L  ++PE  + +  +L  TLDLS+N F   +
Sbjct: 182 ---LGSNLV-HLRTLNLSFNRLTGTIPE-DVGSLENLKGTLDLSHNFFSGMI 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4S5|Y5371_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 86/182 (47%), Gaps = 35/182 (19%)

Query: 42  AYIGCIQS------EREALLRFKQDLKDPANRLALWSD--GNCCTWAGVVCNDSTGHVLE 93
           A++G   S      E  ALL+ +  L D +NRL    D    C +W+ V C   +  V+ 
Sbjct: 39  AFVGITSSTTQPDIEGGALLQLRDSLNDSSNRLKWTRDFVSPCYSWSYVTCRGQS--VVA 96

Query: 94  LRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG 153
           L L                   +S   G ++P++  LK LV LEL NN+   A LP  LG
Sbjct: 97  LNLA------------------SSGFTGTLSPAITKLKFLVTLELQNNSLSGA-LPDSLG 137

Query: 154 SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-----QIPLSFLYLENLSWLSGLS 208
           +M +L+ ++LS   F+G IP     LSNL++LDLSS      IP  F  +    + SG  
Sbjct: 138 NMVNLQTLNLSVNSFSGSIPASWSQLSNLKHLDLSSNNLTGSIPTQFFSIPTFDF-SGTQ 196

Query: 209 LL 210
           L+
Sbjct: 197 LI 198

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 58/260 (22%)

Query: 42  AYIGCIQSEREA-LLRFKQDLKDPANRLALWS---DGNCCTWAGVVCNDSTGHVLELRLG 97
           + +  + SE  A LL  K+  KD  N L  W+     + C W GV C + T +V+ L L 
Sbjct: 17  SLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLS 76

Query: 98  NPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGS 157
           +                    L G+I+P++ DLK L+ ++L  N     Q+P  +G   S
Sbjct: 77  D------------------LNLDGEISPAIGDLKSLLSIDLRGNRLS-GQIPDEIGDCSS 117

Query: 158 LRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ-----IPLSFLYLENLSW-------LS 205
           L+++DLS  E +G IP+ +  L  L+ L L +      IP +   + NL         LS
Sbjct: 118 LQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLS 177

Query: 206 GL--------SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK------LSACSLHNSLP 251
           G          +L++L L G +        LV N+ P L  L       +   SL  S+P
Sbjct: 178 GEIPRLIYWNEVLQYLGLRGNN--------LVGNISPDLCQLTGLWYFDVRNNSLTGSIP 229

Query: 252 ELPIANFSSLYTLDLSYNEF 271
           E  I N ++   LDLSYN+ 
Sbjct: 230 ET-IGNCTAFQVLDLSYNQL 248

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 47  IQSEREALLRFKQDLKDPANRLALW--SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDD 104
           I  + EALL F+  +    + +  W   D + C W GV C+  T  V+ L L        
Sbjct: 30  ISPDGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNL-------- 81

Query: 105 EPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164
                        K++G + P +  L HL  L L NN    A +P  LG+  +L  I L 
Sbjct: 82  ----------TYHKIMGPLPPDIGKLDHLRLLMLHNNALYGA-IPTALGNCTALEEIHLQ 130

Query: 165 RAEFTGMIPYQLGNLSNLQYLDLSSQ-----IPLSFLYLENLS 202
              FTG IP ++G+L  LQ LD+SS      IP S   L+ LS
Sbjct: 131 SNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLS 173

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 96/231 (41%), Gaps = 57/231 (24%)

Query: 46  CIQS-EREALLRFKQDLKDPANRLALWS---DGNCCTWAGVVCNDSTGHVLELRLGNPFL 101
           C+ + E E LL FK  ++DP   L+ WS     + C W+GVVCN+    V+ L L    +
Sbjct: 26  CLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNN-ISRVVSLDLSGKNM 84

Query: 102 HDDE--------PFWLEDYKDETSKLIGKINPSLLDLKH--LVYLELSNNNFEKAQLPVF 151
                       PF L+      + L G I   +       L YL LSNNNF  +    F
Sbjct: 85  SGQILTAATFRLPF-LQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF 143

Query: 152 L---------------------GSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190
           L                     G   +LR +DL     TG +P  LGNLS L++L L+S 
Sbjct: 144 LPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASN 203

Query: 191 -----IPLSFLYLENLSW---------------LSGLSLLKHLDLTGVDLS 221
                +P+    ++NL W               + GLS L HLDL   +LS
Sbjct: 204 QLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLS 254

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
209970631	962	HcrVf4 [Malus floribunda]	0.854	0.244	0.544	3e-63
350284761	915	receptor-like protein [Malus micromalus]	0.854	0.256	0.544	3e-63
14330718	915	HcrVf3 protein [Malus floribunda]	0.854	0.256	0.544	3e-63
350284753	915	receptor-like protein [Malus micromalus]	0.854	0.256	0.544	3e-63
350284745	976	receptor-like protein [Malus x domestica	0.850	0.239	0.556	5e-63
350284765	982	receptor-like protein [Malus sieversii]	0.836	0.234	0.550	5e-61
350284755	982	receptor-like protein [Malus micromalus]	0.836	0.234	0.550	6e-61
350284763	982	receptor-like protein [Malus micromalus]	0.836	0.234	0.550	6e-61
209970609	1041	AL07-2p [Malus floribunda]	0.869	0.229	0.536	1e-60
209970607	1045	M18S-3Ap [Malus floribunda]	0.887	0.233	0.542	1e-60

>gi|209970631|gb|ACJ03074.1| HcrVf4 [Malus floribunda]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 177/261 (67%), Gaps = 26/261 (9%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW-----SDGNC 76
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDP NRLA W     SD +C
Sbjct: 60  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDC 119

Query: 77  CTWAGVVCNDSTGHVLELRLGN--PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLV 134
           C+W GVVC+ +TGH+ EL L N  PFL            D  S   GKINPSLL LKHL 
Sbjct: 120 CSWTGVVCDHTTGHIHELHLNNTDPFL------------DLKSSFGGKINPSLLSLKHLN 167

Query: 135 YLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194
           +L+LSNN F   Q+P F GSM SL H++L+ + F G+IP++LGNLS+L+YL+LSS     
Sbjct: 168 FLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNS--I 225

Query: 195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
           +L +ENL W+SGLSLLKHLDL+GV+LS ASDW  VTNMLPSL  L +S C L+  +P LP
Sbjct: 226 YLKVENLQWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLYQ-IPPLP 284

Query: 255 IANFSSLYTLDLSYNEFDNTL 275
             NF+SL  LDLS+N F++ +
Sbjct: 285 TTNFTSLVVLDLSFNNFNSLM 305

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284761|gb|AEQ27752.1| receptor-like protein [Malus micromalus]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 177/261 (67%), Gaps = 26/261 (9%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW-----SDGNC 76
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDP NRLA W     SD +C
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDC 72

Query: 77  CTWAGVVCNDSTGHVLELRLGN--PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLV 134
           C+W GVVC+ +TGH+ EL L N  PFL            D  S   GKINPSLL LKHL 
Sbjct: 73  CSWTGVVCDHTTGHIHELHLNNTDPFL------------DLKSSFGGKINPSLLSLKHLN 120

Query: 135 YLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194
           +L+LSNN F   Q+P F GSM SL H++L+ + F G+IP++LGNLS+L+YL+LSS     
Sbjct: 121 FLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNS--I 178

Query: 195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
           +L +ENL W+SGLSLLKHLDL+GV+LS ASDW  VTNMLPSL  L +S C L+  +P LP
Sbjct: 179 YLKVENLQWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLY-QIPPLP 237

Query: 255 IANFSSLYTLDLSYNEFDNTL 275
             NF+SL  LDLS+N F++ +
Sbjct: 238 TTNFTSLVVLDLSFNNFNSLM 258

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330718|emb|CAC40827.1| HcrVf3 protein [Malus floribunda]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 177/261 (67%), Gaps = 26/261 (9%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW-----SDGNC 76
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDP NRLA W     SD +C
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDC 72

Query: 77  CTWAGVVCNDSTGHVLELRLGN--PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLV 134
           C+W GVVC+ +TGH+ EL L N  PFL            D  S   GKINPSLL LKHL 
Sbjct: 73  CSWTGVVCDHTTGHIHELHLNNTDPFL------------DLKSSFGGKINPSLLSLKHLN 120

Query: 135 YLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194
           +L+LSNN F   Q+P F GSM SL H++L+ + F G+IP++LGNLS+L+YL+LSS     
Sbjct: 121 FLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNS--I 178

Query: 195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
           +L +ENL W+SGLSLLKHLDL+GV+LS ASDW  VTNMLPSL  L +S C L+  +P LP
Sbjct: 179 YLKVENLQWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLY-QIPPLP 237

Query: 255 IANFSSLYTLDLSYNEFDNTL 275
             NF+SL  LDLS+N F++ +
Sbjct: 238 TTNFTSLVVLDLSFNNFNSLM 258

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284753|gb|AEQ27748.1| receptor-like protein [Malus micromalus]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 177/261 (67%), Gaps = 26/261 (9%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW-----SDGNC 76
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDP NRLA W     SD +C
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPTNRLASWVAEEDSDSDC 72

Query: 77  CTWAGVVCNDSTGHVLELRLGN--PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLV 134
           C+W GVVC+ +TGH+ EL L N  PFL            D  S   GKINPSLL LKHL 
Sbjct: 73  CSWTGVVCDHTTGHIHELHLNNTDPFL------------DLKSSFGGKINPSLLSLKHLN 120

Query: 135 YLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194
           +L+LSNN F   Q+P F GSM SL H++L+ + F G+IP++LGNLS+L+YL+LSS     
Sbjct: 121 FLDLSNNYFYPTQIPSFFGSMTSLTHLNLAYSRFGGIIPHKLGNLSSLRYLNLSSNS--I 178

Query: 195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
           +L +ENL W+SGLSLLKHLDL+GV+LS ASDW  VTNMLPSL  L +S C L+  +P LP
Sbjct: 179 YLKVENLQWISGLSLLKHLDLSGVNLSKASDWLQVTNMLPSLVKLIMSDCQLY-QIPPLP 237

Query: 255 IANFSSLYTLDLSYNEFDNTL 275
             NF+SL  LDLS+N F++ +
Sbjct: 238 TTNFTSLVVLDLSFNNFNSLM 258

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284745|gb|AEQ27744.1| receptor-like protein [Malus x domestica]

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 176/257 (68%), Gaps = 23/257 (8%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA+A I   IG CNG+      C +SER++LL FKQDLKDPANRLA W    D +CC+
Sbjct: 13  RFLAIATITFSIGLCNGNPSWPPLCKESERQSLLMFKQDLKDPANRLASWVAEEDSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138
           W GVVC+  TGH+ EL L N      EP+ LE      S   GKINPSLL LKHL YL+L
Sbjct: 73  WTGVVCDHMTGHIRELHLNN-----SEPY-LE------SSFGGKINPSLLGLKHLNYLDL 120

Query: 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL 198
           SNNNF+  Q+P F GSM SL H++L  +EF G+IP++LGNL++L+YL+LS    L  L +
Sbjct: 121 SNNNFQGTQIPSFFGSMTSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLSR---LYDLKV 177

Query: 199 ENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
           ENL W+SGLSLLKHLDL+ V+LS ASDW  VTNMLPSL  L +S C LH   P LP  NF
Sbjct: 178 ENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELDMSYCQLHQITP-LPTTNF 236

Query: 259 SSLYTLDLSYNEFDNTL 275
           +SL  LDLS+N F++ +
Sbjct: 237 TSLVVLDLSFNSFNSLM 253

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284765|gb|AEQ27754.1| receptor-like protein [Malus sieversii]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 171/249 (68%), Gaps = 19/249 (7%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDPANRLA W    D +CC+
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138
           W GVVC+ +TGH+ EL L N           + + D  S   GKINPSLL LKHL +L+L
Sbjct: 73  WTGVVCDHTTGHIHELHLNN----------TDSFLDFESSFGGKINPSLLSLKHLNFLDL 122

Query: 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL 198
           SNNNF   Q+P F GSM SL+H++L+ + F G+IP++LGNLS+L+YL+LSS    S L +
Sbjct: 123 SNNNFNGTQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLSSFYG-SNLKV 181

Query: 199 ENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
           EN+ W+SGLSLLKHLDL+ V+LS ASDW  VTNMLPSL  L +S C L + +P LP  NF
Sbjct: 182 ENIQWISGLSLLKHLDLSSVNLSKASDWLQVTNMLPSLVELIMSDCQL-DQIPHLPTPNF 240

Query: 259 SSLYTLDLS 267
           +SL  LDLS
Sbjct: 241 TSLVVLDLS 249

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284755|gb|AEQ27749.1| receptor-like protein [Malus micromalus]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 171/249 (68%), Gaps = 19/249 (7%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDPANRLA W    D +CC+
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138
           W GVVC+ +TGH+ EL L N           + + D  S   GKINPSLL LKHL +L+L
Sbjct: 73  WTGVVCDHTTGHIHELHLNN----------TDSFLDFESSFGGKINPSLLSLKHLNFLDL 122

Query: 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL 198
           SNNNF   Q+P F GSM SL+H++L+ + F G+IP++LGNLS+L+YL+LSS    S L +
Sbjct: 123 SNNNFNGTQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLSSFYG-SNLKV 181

Query: 199 ENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
           EN+ W+SGLSLLKHLDL+ V+LS ASDW  VTNMLPSL  L +S C L + +P LP  NF
Sbjct: 182 ENIQWISGLSLLKHLDLSSVNLSKASDWLQVTNMLPSLVELIMSDCQL-DQIPHLPTPNF 240

Query: 259 SSLYTLDLS 267
           +SL  LDLS
Sbjct: 241 TSLVVLDLS 249

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284763|gb|AEQ27753.1| receptor-like protein [Malus micromalus]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 171/249 (68%), Gaps = 19/249 (7%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA+A I   IG CNG+      C +SER+ALL FKQDLKDPANRLA W    D +CC+
Sbjct: 13  RFLAIATITFSIGLCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138
           W GVVC+ +TGH+ EL L N           + + D  S   GKINPSLL LKHL +L+L
Sbjct: 73  WTGVVCDHTTGHIHELHLNN----------TDSFLDFESSFGGKINPSLLSLKHLNFLDL 122

Query: 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL 198
           SNNNF  AQ+P F GSM SL+H++L+ + F G+IP++LGNLS+L+YL+LSS    S L +
Sbjct: 123 SNNNFNGAQIPSFFGSMTSLKHLNLAYSVFGGVIPHKLGNLSSLRYLNLSSFYG-SNLKV 181

Query: 199 ENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
           EN+ W+SGL LLKHLDL+ V+LS ASDW  VTNMLPSL  L +S C L + +P LP  NF
Sbjct: 182 ENIQWISGLPLLKHLDLSSVNLSKASDWLQVTNMLPSLVELIMSDCQL-DQIPHLPTPNF 240

Query: 259 SSLYTLDLS 267
           +SL  LDLS
Sbjct: 241 TSLVVLDLS 249

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970609|gb|ACJ03067.1| AL07-2p [Malus floribunda]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/259 (53%), Positives = 171/259 (66%), Gaps = 20/259 (7%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA A I   I  CNG+      C +SER+ALL FKQDLKDPANRLA W    D +CC+
Sbjct: 13  RFLAFATITFSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANRLASWVAEEDSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138
           W GVVC+  TGH+ EL L N           + Y    S   GKINPSLL LKHL YL+L
Sbjct: 73  WTGVVCDHITGHIHELHLNN----------TDRYFGFKSSFGGKINPSLLSLKHLNYLDL 122

Query: 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL--SFL 196
           S NNF   Q+P F GSM SL H++L  ++F G+IP++LGNLS+L+YL+L+S      S L
Sbjct: 123 SYNNFRTTQIPSFFGSMTSLTHLNLGHSKFYGIIPHKLGNLSSLRYLNLNSSYNFYRSTL 182

Query: 197 YLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIA 256
            +ENL W+SGLSLLKHLDL+ V+LS ASDW  VTNMLPSL  L +SAC L + +P LP  
Sbjct: 183 QVENLQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELHMSACEL-DQIPPLPTP 241

Query: 257 NFSSLYTLDLSYNEFDNTL 275
           NF+SL  LDLS N F++ +
Sbjct: 242 NFTSLVVLDLSENFFNSLM 260

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/258 (54%), Positives = 174/258 (67%), Gaps = 14/258 (5%)

Query: 26  ELLALANI--KIGYCNGSAYIG--CIQSEREALLRFKQDLKDPANRLALW---SDGNCCT 78
             LA+A I   IG  NG+      C +SER+ALL FKQDL DPAN+LA W      +CC+
Sbjct: 13  RFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASWVAEEGSDCCS 72

Query: 79  WAGVVCNDSTGHVLELRLGNPFLHD-DEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLE 137
           W  VVC+  TGH+ EL L   + H   +PF L    D  S   GKINPSLL LKHL YL+
Sbjct: 73  WTRVVCDHMTGHIQELHLDGSYFHPYSDPFDL----DSDSCFSGKINPSLLSLKHLNYLD 128

Query: 138 LSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY 197
           LSNNNF+  Q+P F GSM SL H++L+ +EF G+IP++LGNLS+L+YL+LSS    + L 
Sbjct: 129 LSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLNLSSSNGFN-LK 187

Query: 198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 257
           +ENL W+SGLSLLKHLDL+ V+LS ASDW  VTNMLPSL  L +S C LH   P LP  N
Sbjct: 188 VENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLHQITP-LPTTN 246

Query: 258 FSSLYTLDLSYNEFDNTL 275
           F+SL  LDLS N F++ +
Sbjct: 247 FTSLVVLDLSGNRFNSLM 264

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.872	0.265	0.355	7.2e-30
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.52	0.168	0.352	1.1e-18
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.52	0.181	0.324	1.5e-18
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.487	0.170	0.318	3.4e-17
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.763	0.206	0.322	1.5e-15
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.730	0.282	0.296	1.3e-14
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.650	0.204	0.318	1.4e-14
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.447	0.137	0.355	1.6e-14
TAIR|locus:2169404	330	PGIP2 "polygalacturonase inhib	0.512	0.427	0.333	2.7e-14
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.512	0.179	0.331	5.7e-14

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 7.2e-30, P = 7.2e-30
 Identities = 91/256 (35%), Positives = 135/256 (52%)

Query:    27 LLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCND 86
             +L L N+  G    +A   CI +ER+ALL F+  L D ++RL  WS  +CC W GV+C+ 
Sbjct:    17 ILLLKNLNYG---SAASPKCISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDA 73

Query:    87 STGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA 146
              T HV+++ L NP     +    ++YK     L GKI+PSL  LK L YL+LS+N+F + 
Sbjct:    74 RTSHVVKIDLRNP----SQDVRSDEYK--RGSLRGKIHPSLTQLKFLSYLDLSSNDFNEL 127

Query:   147 QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI-----PLSFLYXXXX 201
             ++P F+G + SLR+++LS + F+G IP  LGNLS L+ LDL ++       LS       
Sbjct:   128 EIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLR 187

Query:   202 XXXXXXXXXXXXXXTGVDLSTASD-WFLVTNMLPSLQVLKLSACSLHNSLPELPI-ANFS 259
                             V+LS A + W    + + +L+ L L    L N  P L   A+  
Sbjct:   188 WLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLK 247

Query:   260 SLYTLDLSYNEFDNTL 275
              L  LDLS N  ++ +
Sbjct:   248 LLEVLDLSENSLNSPI 263

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 56/159 (35%), Positives = 83/159 (52%)

Query:    46 CIQSEREALLRFKQDLKDPANRLAL------WSDG-NCCTWAGVVCNDSTGHVLELRLGN 98
             C   +R+ALL F+ +    A+   +      W+   +CC W GV CND +G V+ L + N
Sbjct:    34 CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query:    99 PFLHD-----DEPFWLEDYK--DETS-KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV 150
              FL++        F L+  +  D T+  L G+I  SL +L HL  + L  N F   ++P 
Sbjct:    94 TFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFV-GEIPA 152

Query:   151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
              +G++  LRH+ L+    TG IP  LGNLS L  L+L S
Sbjct:   153 SIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFS 191

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 51/157 (32%), Positives = 81/157 (51%)

Query:    46 CIQSEREALLRFKQDL----KDPANRLALWSD-GNCCTWAGVVCNDSTGHVLELRLGNPF 100
             C   +R+ALL FK +       P+  L+ W+   +CC W GV C+D +G V+ L L    
Sbjct:    37 CRHDQRDALLEFKHEFPVSESKPSPSLSSWNKTSDCCFWEGVTCDDESGEVVSLDLSYVL 96

Query:   101 LHDD-EP----FWLEDYKDETSK---LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL 152
             L++  +P    F L+  ++ T     L G++  SL +L  L +L+LS+N     ++   +
Sbjct:    97 LNNSLKPTSGLFKLQQLQNLTLSDCHLYGEVTSSLGNLSRLTHLDLSSNQLT-GEVLASV 155

Query:   153 GSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
               +  LR + LS   F+G IP    NL+ L  LD+SS
Sbjct:   156 SKLNQLRDLLLSENSFSGNIPTSFTNLTKLSSLDISS 192

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
 Identities = 50/157 (31%), Positives = 82/157 (52%)

Query:    46 CIQSEREALLRFKQDLKDPANRLAL-WSDG-NCCTWAGVVCNDSTGHVLELRLGNPFLHD 103
             C   +R+ALL  +++   P+  L   W+ G +CC+W GV C+   G V+ L+L       
Sbjct:    38 CRHDQRDALLELQKEFPIPSVILQNPWNKGIDCCSWGGVTCDAILGEVISLKL------- 90

Query:   104 DEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163
                ++L      T+    K + +L  L+HL +L+LSN N +  ++P  + ++  L H+DL
Sbjct:    91 ---YFLS-----TASTSLKSSSALFKLQHLTHLDLSNCNLQ-GEIPSSIENLSHLTHLDL 141

Query:   164 SRAEFTGMIPYQLGNLSNLQYLDLSSQ-----IPLSF 195
             S     G +P  +GNL+ L+Y+DL        IP SF
Sbjct:   142 STNHLVGEVPASIGNLNQLEYIDLRGNHLRGNIPTSF 178

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 76/236 (32%), Positives = 108/236 (45%)

Query:    54 LLRFKQDLKDPANRLALWS--DGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLED 111
             L+ FK DL DP + L  W+  D   C+W+ V CN  T  V+EL L    L       ++ 
Sbjct:    40 LIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSLDGLALTGKINRGIQK 99

Query:   112 YKD------ETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165
              +         +   G IN +L +  HL  L+LS+NN    Q+P  LGS+ SL+H+DL+ 
Sbjct:   100 LQRLKVLSLSNNNFTGNIN-ALSNNNHLQKLDLSHNNLS-GQIPSSLGSITSLQHLDLTG 157

Query:   166 AEFTGMIPYQL-GNLSNLQYLDLS-----SQIPLSFLYXXXXXXXXXXXXXXXXXXTGVD 219
               F+G +   L  N S+L+YL LS      QIP S L+                  +G  
Sbjct:   158 NSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIP-STLFRCSVLNSLNLSRNRF---SGNP 213

Query:   220 LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
                +  W      L  L+ L LS+ SL  S+P L I +  +L  L L  N+F   L
Sbjct:   214 SFVSGIW-----RLERLRALDLSSNSLSGSIP-LGILSLHNLKELQLQRNQFSGAL 263

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 65/219 (29%), Positives = 93/219 (42%)

Query:    63 DPANRLALWSDGN--CCTWAGVVCNDSTGHVLELRLGNPFLHDD--------EPFWLEDY 112
             +P  +   W + N  CC W GV CN  +G V+EL L   +LH             +L   
Sbjct:    67 EPHPKTESWGNNNSDCCNWEGVTCNAKSGEVIELDLSCSYLHGRFHSNSSIRNLHFLTTL 126

Query:   113 KDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI 172
                 +   G+I  S+ +L HL YL+LS N+F   Q+P  +G++  L  +DL   +F+G +
Sbjct:   127 DLSFNDFKGQIMSSIENLSHLTYLDLSFNHFS-GQVPSSIGNLSHLTFLDLYCNQFSGQV 185

Query:   173 PYQLGNLSNLQYLDLSSQIPLSFLYXXXXXXXXXXXXXXXXXXTGVDLSTASDWFLVTNM 232
             P  +GNLS+L  L+LS      F                        L        + N 
Sbjct:   186 PSSIGNLSHLTTLELSFN---RFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPS--SIGN- 239

Query:   233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
             L +L  L L   +    +P   I N S L  LDLS N F
Sbjct:   240 LSNLTSLYLCKNNFSGQIPSF-IGNLSQLTRLDLSSNNF 277

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 64/201 (31%), Positives = 98/201 (48%)

Query:    13 TATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSEREALLRFKQDLKDPAN-RLALW 71
             T  F F  F  F  + A+ NI +  C+       ++ + E  ++ K     P+  +   W
Sbjct:     7 TFYFLFLFFSNFRGVFAVPNIHL--CHFEQRDALLEFKNEFKIK-KPCFGCPSPLKTKSW 63

Query:    72 SDGN-CCTWAGVVCNDSTGHVLELRLGNPFLH-----DDEPFWLEDYKDETS------KL 119
              +G+ CC W G+ C+  TG V+E+ L    LH     +     L+++   T+       L
Sbjct:    64 ENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHL 123

Query:   120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
              G+I+ S+ +L HL  L+LS NNF    +P  LG++  L  + L    F G IP  LGNL
Sbjct:   124 SGQISSSIGNLSHLTTLDLSGNNFS-GWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNL 182

Query:   180 SNLQYLDLSS-----QIPLSF 195
             S L +LDLS+     +IP SF
Sbjct:   183 SYLTFLDLSTNNFVGEIPSSF 203

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 49/138 (35%), Positives = 70/138 (50%)

Query:    71 W-SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDD--------EPFWLEDYKDETSKLIG 121
             W ++ +CC W GV CN  +G V+EL L    LH             +L       +   G
Sbjct:    13 WGNNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDFEG 72

Query:   122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN 181
             +I  S+ +L HL  L+LS N F   Q+   +G++  L  +DLS  +F+G IP  +GNLS+
Sbjct:    73 QITSSIENLSHLTSLDLSYNRFS-GQILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSH 131

Query:   182 LQYLDLSS-----QIPLS 194
             L +L LS      QIP S
Sbjct:   132 LTFLGLSGNRFFGQIPSS 149

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2169404 PGIP2 "polygalacturonase inhibiting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 51/153 (33%), Positives = 79/153 (51%)

Query:    46 CIQSEREALLRFKQDLKDPANRLALWSDG-NCCTWAGVVCNDST-GH-VLELRLGNPFLH 102
             C + ++  LL+ K+ L +P + LA W    +CC+W  + C D+T  H V  L + +  + 
Sbjct:    25 CHKDDKTTLLKIKKSLNNPYH-LASWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEIS 83

Query:   103 DDEPFWLEDYKDETS-------KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSM 155
                P  + D    TS        L G I P++  LK+L +L LS  N     +P FL  +
Sbjct:    84 GQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLT-GPVPEFLSQL 142

Query:   156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
              +L +IDLS  + +G IP  L +L  L+YL+LS
Sbjct:   143 KNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELS 175

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0090353 "polygalacturonase inhibitor activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 50/151 (33%), Positives = 81/151 (53%)

Query:    46 CIQSEREALLRFKQDLKDPANRLALWSDG-NCCTWAGVVCNDSTGHVLELRLGNPFLH-- 102
             C   +R+ LL+F+ +     ++ + W+   +CC+W GV C+D +G V+ L L +  L+  
Sbjct:    32 CRHDQRDGLLKFRDEFPIFESKSSPWNKTTDCCSWDGVTCDDKSGQVISLDLRSTLLNSS 91

Query:   103 ---DDEPFWLEDYKD-ETS--KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMG 156
                +   F L+  +  + S   L G+I  SL +L  L  LELS+N     ++P  +G++ 
Sbjct:    92 LKTNSSLFRLQYLRHLDLSGCNLHGEIPSSLGNLSRLENLELSSNRLV-GEIPYSIGNLK 150

Query:   157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
              LR++ L   +  G IP  LGNLS L  LDL
Sbjct:   151 QLRNLSLGDNDLIGEIPSSLGNLSLLLDLDL 181

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 85/298 (28%), Positives = 119/298 (39%), Gaps = 75/298 (25%)

Query: 50  EREALLRFKQDLKDPANRLALWSDGN-CCTWAGVVCNDSTGHVLELRLGNPFLHDD---- 104
           E E LL FK  + DP   L+ W+     C W G+ CN+S+  V+ + L    +       
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGKISSA 88

Query: 105 ---EPFWLEDYKDETSKLIGKINPSLLDLKH-LVYLELSNNNFE---------------- 144
               P+ ++      ++L G I   +      L YL LSNNNF                 
Sbjct: 89  IFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147

Query: 145 -----KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-----QIPLS 194
                  ++P  +GS  SL+ +DL      G IP  L NL++L++L L+S     QIP  
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 195 FLYLENLSW-------LSG--------LSLLKHLD-----LTGV------DLSTASDWFL 228
              +++L W       LSG        L+ L HLD     LTG       +L      FL
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 229 VTNML-----PS------LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
             N L     PS      L  L LS  SL   +PEL +    +L  L L  N F   +
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 24/174 (13%)

Query: 116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
           +++L+G+I   L  +K L ++ L  NN    ++P  +G + SL H+DL     TG IP  
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 176 LGNLSNLQYL-----DLSSQIPLSFLYLENL-------SWLSG--------LSLLKHLDL 215
           LGNL NLQYL      LS  IP S   L+ L       + LSG        L  L+ L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 216 TGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
              + +      L +  LP LQVL+L +      +P+  +   ++L  LDLS N
Sbjct: 316 FSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 19/164 (11%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
           + L G+IN    D+  L  L L+ N F    LP   GS   L ++DLSR +F+G +P +L
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKF-FGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 177 GNLSNLQYLDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231
           G+LS L  L LS      +IP      + L  L     L H  L+G   ++ S+      
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD----LSHNQLSGQIPASFSE------ 545

Query: 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            +P L  L LS   L   +P+  + N  SL  +++S+N    +L
Sbjct: 546 -MPVLSQLDLSQNQLSGEIPK-NLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           L G I   +  L+HL  + LS N+     +P  LGS+ SL  +DLS   F G IP  LG 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 179 LSNLQYLDL 187
           L++L+ L+L
Sbjct: 489 LTSLRILNL 497

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 47 IQSEREALLRFKQDL-KDPANRLALW--SDGNCCTWAGVVCN 85
          +  +R+ALL FK  L  DP+  L+ W  S  + C+W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168
           L   K   +KL G+I   L   K LV L+LS+N     Q+P     M  L  +DLS+ + 
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQL 559

Query: 169 TGMIPYQLGNLSNLQYLDLS-----SQIPLSFLYLE-NLSWLSGLSLLKHLDLTG----- 217
           +G IP  LGN+ +L  +++S       +P +  +L  N S ++G   L   D T      
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Query: 218 -VDLSTASDWFLVTNMLPSLQVLKLSA 243
                T S WF +T  L +  VL L A
Sbjct: 620 KRVRKTPSWWFYITCTLGAFLVLALVA 646

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 23/175 (13%)

Query: 116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
           T+ L G+I   L    +L  L L +N+ E  ++P  LG+  SLR + L    F+G +P +
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLE-GEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 176 LGNLSNLQYLDLSS------------QIP-LSFLYLE------NLSWLSGLSLLKHLDLT 216
              L  + +LD+S+             +P L  L L        L    G   L++LDL+
Sbjct: 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
               S A    L +  L  L  LKLS   L   +P+  +++   L +LDLS+N+ 
Sbjct: 484 RNQFSGAVPRKLGS--LSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 31/183 (16%)

Query: 116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
           ++   GKI  +L  L  L  L+L +N F   ++P  LG   +L  +DLS    TG IP  
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 176 LGNLSNLQYL-----DLSSQIPLSFLYLENL-------SWLSG--------LSLLKHLDL 215
           L +  NL  L      L  +IP S     +L       +  SG        L L+  LD+
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 216 TGVDLS---TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           +  +L     +  W      +PSLQ+L L+       LP+   +    L  LDLS N+F 
Sbjct: 436 SNNNLQGRINSRKW-----DMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFS 488

Query: 273 NTL 275
             +
Sbjct: 489 GAV 491

Length = 968

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 25/158 (15%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
           PS    ++LV L++  +  EK    V   S+  LR+IDL  ++    IP  L   +NL+ 
Sbjct: 605 PSNFRPENLVKLQMQGSKLEKLWDGVH--SLTGLRNIDLRGSKNLKEIP-DLSMATNLET 661

Query: 185 LDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDL--TGVDLSTASDWFLVTNMLPSLQ 237
           L LS      ++P S  YL  L  L  +S  ++L++  TG++L              SL 
Sbjct: 662 LKLSDCSSLVELPSSIQYLNKLEDLD-MSRCENLEILPTGINLK-------------SLY 707

Query: 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            L LS CS   S P++   N S L   + +  EF + L
Sbjct: 708 RLNLSGCSRLKSFPDIS-TNISWLDLDETAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT 216
           +L+ +DLS    T +       L NL+ LDLS    L+ +   +    SGL  L+ LDL+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSI---SPEAFSGLPSLRSLDLS 56

Query: 217 G 217
           G
Sbjct: 57  G 57

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 140 NNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS-----SQIPLS 194
           +N   +  +P  +  +  L+ I+LS     G IP  LG++++L+ LDLS       IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 195 FLYLENLSWLSGLSLLKHLDLTGVDLS 221
                    L  L+ L+ L+L G  LS
Sbjct: 486 ---------LGQLTSLRILNLNGNSLS 503

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
PLN03150	623	hypothetical protein; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.62
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.43
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
PLN03150	623	hypothetical protein; Provisional	99.17
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.14
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.16
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.72
KOG4308	478	consensus LRR-containing protein [Function unknown	94.44
KOG4308	478	consensus LRR-containing protein [Function unknown	94.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.03
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.2
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.12
smart00370	26	LRR Leucine-rich repeats, outliers.	89.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.82
KOG4341	483	consensus F-box protein containing LRR [General fu	88.46
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.9
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.84

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=9.5e-28  Score=237.00  Aligned_cols=220  Identities=30%  Similarity=0.449  Sum_probs=148.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCc------cccccccCCCCcc
Q 041140           47 IQSEREALLRFKQDLKDPANRLALW-SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP------FWLEDYKDETSKL  119 (275)
Q Consensus        47 ~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l  119 (275)
                      .++|+.+|.+||+++.+|...+.+| ...+||.|.||+|++ .++|+.|+++++.+.+...      ..|+.|++++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            4589999999999998787778899 567899999999986 5799999999988765322      3567777788877


Q ss_pred             eeecCcccc-CCCCCCEEECCCCCCCCC---------------------CcchhhhCCccCCEEECCCCCCCCCCccccc
Q 041140          120 IGKINPSLL-DLKHLVYLELSNNNFEKA---------------------QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG  177 (275)
Q Consensus       120 ~~~lp~~l~-~l~~L~~L~Ls~n~l~~~---------------------~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~  177 (275)
                      +|.+|..+. .+++|++|++++|.+++.                     .+|..++.+++|++|++++|.+.+.+|..++
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~  185 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT  185 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence            777776544 566666666666655543                     1455555555666666666655555555555


Q ss_pred             CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140          178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN  257 (275)
Q Consensus       178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  257 (275)
                      ++++|++|++++|.+.+..|..    ++++++|+.|++++|.+++.  .+..++.+++|++|++++|.+++. .|..++.
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~  258 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGN  258 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCceeccc-cChhHhC
Confidence            6666666666665555444444    56666666666666666654  233556666777777777766665 4446667


Q ss_pred             CCCcCEEecccCcCcee
Q 041140          258 FSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       258 l~~L~~L~L~~N~l~g~  274 (275)
                      +++|++|++++|.++|.
T Consensus       259 l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             CCCCCEEECcCCeeecc
Confidence            77777777777766653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=1.1e-20  Score=187.02  Aligned_cols=158  Identities=27%  Similarity=0.334  Sum_probs=108.9

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .|+.|++++|.+.+.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++|++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            466677777777777777788888888888888888776 7778888888888888888888777888888888888888


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+..|..    ++++++|++|++++|.+++..  +..++.+++|++|++++|++.+. .|..+..+++|++|+++
T Consensus       220 ~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        220 GYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLS  292 (968)
T ss_pred             cCCccCCcCChh----HhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECc
Confidence            887776655554    666677777777777666542  23455555666666666655554 33345555555555555


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|.++|
T Consensus       293 ~n~l~~  298 (968)
T PLN00113        293 DNSLSG  298 (968)
T ss_pred             CCeecc
Confidence            555544

>PLN03150 hypothetical protein; Provisional

Probab=99.70  E-value=1.9e-16  Score=149.03  Aligned_cols=153  Identities=30%  Similarity=0.424  Sum_probs=121.8

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc----ccCceEecCCC----CcEEEEEcCCCCCCCCCccccccccCC
Q 041140           44 IGCIQSEREALLRFKQDLKDPANRLALWSDGNCC----TWAGVVCNDST----GHVLELRLGNPFLHDDEPFWLEDYKDE  115 (275)
Q Consensus        44 ~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~~----~~v~~l~l~~~~~~~l~~~~L~~l~l~  115 (275)
                      ..+.++|.++|..+|+++..+..  .+|.+..|+    .|.|+.|....    .+|+.|+|+++                
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n----------------  428 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ----------------  428 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC----------------
Confidence            45667899999999999865432  479664443    79999995321    24777887776                


Q ss_pred             CCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCc
Q 041140          116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF  195 (275)
Q Consensus       116 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~  195 (275)
                        ++.|.+|..++.+++|+.|+|++|.+.+. +|..++.+++|++|++++|+++|.+|..++.+++|++|++++|.+.+.
T Consensus       429 --~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        429 --GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             --CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence              88889999999999999999999999887 888899999999999999999999999999999999999999988887


Q ss_pred             ccccccccccC-CCCCCeeeccCCCCC
Q 041140          196 LYLENLSWLSG-LSLLKHLDLTGVDLS  221 (275)
Q Consensus       196 ~~~~~l~~l~~-l~~L~~L~L~~n~l~  221 (275)
                      .|..    +.. ..++..+++.+|...
T Consensus       506 iP~~----l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        506 VPAA----LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CChH----HhhccccCceEEecCCccc
Confidence            7765    443 245667777777543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=6.9e-19  Score=134.72  Aligned_cols=151  Identities=25%  Similarity=0.349  Sum_probs=125.2

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      ++.|.+++|.++ .+|+.++.+.+|+.|++++|+++.  +|..++.+++|++|+++.|++. .+|..|+.+|.|+.||+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            444555666886 567778999999999999999987  8999999999999999999998 789999999999999998


Q ss_pred             cCCCCC-cccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          189 SQIPLS-FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       189 ~n~~~~-~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      .|.+.. ..|..    +..+..|+.|+++.|.+.-.|.   .++++++|+.|.+..|.+-.  .|..++.+..|+.|.+.
T Consensus       111 ynnl~e~~lpgn----ff~m~tlralyl~dndfe~lp~---dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  111 YNNLNENSLPGN----FFYMTTLRALYLGDNDFEILPP---DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             ccccccccCCcc----hhHHHHHHHHHhcCCCcccCCh---hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcc
Confidence            886543 44555    7778889999999998888754   77889999999999998876  45678889999999999


Q ss_pred             cCcCc
Q 041140          268 YNEFD  272 (275)
Q Consensus       268 ~N~l~  272 (275)
                      +|.++
T Consensus       182 gnrl~  186 (264)
T KOG0617|consen  182 GNRLT  186 (264)
T ss_pred             cceee
Confidence            98875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.62  E-value=1.5e-16  Score=141.83  Aligned_cols=180  Identities=24%  Similarity=0.227  Sum_probs=101.2

Q ss_pred             CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEE
Q 041140           88 TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHI  161 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L  161 (275)
                      .++++.++|.+|.|.....      ..++++|++.|.++..--+++..-.++++|+|++|.|+.. -...|..+.+|.+|
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLLTL  202 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-ccccccccchheee
Confidence            4789999999998876433      2455666666666533333454555666666666666654 33455566666666


Q ss_pred             ECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCccccc--------cc------------ccccCCCCCCeeeccCCCC
Q 041140          162 DLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLE--------NL------------SWLSGLSLLKHLDLTGVDL  220 (275)
Q Consensus       162 ~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~--------~l------------~~l~~l~~L~~L~L~~n~l  220 (275)
                      .|+.|+++ .+|. .|.++++|+.|+|..|++.-..-..        .+            ..|..+.++++|+|..|++
T Consensus       203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            66666666 3443 4445666666666666443110000        00            0134445555555555555


Q ss_pred             CCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       221 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +...  -+++-.++.|++|++++|.|... ..+.++.+++|+.|+|++|+|+
T Consensus       282 ~~vn--~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  282 QAVN--EGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhh--cccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccc
Confidence            5442  12344556666666666666554 4445555666666666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-16  Score=142.51  Aligned_cols=172  Identities=19%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140           90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL  163 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  163 (275)
                      .+..+||+.|.|+.++.      .+++.|++++|.++..--..|..+.+|.+|.|++|.++.. .+..|.++++|+.|+|
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhc
Confidence            35666777666655432      3566666666666655555566666666666666666653 3334555666666666


Q ss_pred             CCCCCCC------------------------CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC
Q 041140          164 SRAEFTG------------------------MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD  219 (275)
Q Consensus       164 ~~n~l~~------------------------~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~  219 (275)
                      ..|++.-                        .-...|..|.++++|+|+.|++.......    +.+++.|++|+++.|.
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNA  304 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc----ccccchhhhhccchhh
Confidence            6665431                        11112334445555555555443222222    5566666666666666


Q ss_pred             CCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          220 LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       220 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      +....  ...|...++|+.|+|++|+++.. ++..|..+..|+.|+|+.|
T Consensus       305 I~rih--~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  305 IQRIH--IDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             hheee--cchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhccccc
Confidence            66652  23555566666666666666654 4444444434444444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=6.5e-16  Score=139.02  Aligned_cols=155  Identities=26%  Similarity=0.281  Sum_probs=101.7

Q ss_pred             ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-cCCCCCCeE
Q 041140          108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYL  185 (275)
Q Consensus       108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~~l~~L~~L  185 (275)
                      .|+.+++.+|++. .-+|+.+..+..|+.||||+|++..  +|..+.+-+++-.|+|++|++. +||..+ -+++.|-+|
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            4555666666665 3367777778888888888888876  7777777788888888888877 677643 477778888


Q ss_pred             EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC-----Cc------------------hhhhhCCCCCCcEEecc
Q 041140          186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA-----SD------------------WFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~------------------~~~~~~~l~~L~~L~L~  242 (275)
                      |||+|++... |..    +..+..|+.|.|++|.+...     |+                  +|..+..+.+|..+|++
T Consensus       156 DLS~NrLe~L-PPQ----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  156 DLSNNRLEML-PPQ----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             ccccchhhhc-CHH----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            8888876532 222    45555556666665533211     10                  23344455567777777


Q ss_pred             CCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          243 ACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      .|.+..  .|+.+..+++|+.|+||+|+|+
T Consensus       231 ~N~Lp~--vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  231 ENNLPI--VPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             ccCCCc--chHHHhhhhhhheeccCcCcee
Confidence            777754  4556777777777777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.53  E-value=4.6e-16  Score=139.98  Aligned_cols=45  Identities=33%  Similarity=0.507  Sum_probs=24.1

Q ss_pred             cchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140          148 LPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       148 ~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      +|.++..+.+|..++++.|.+. .+|+.+.++++|+.|+||+|.++
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            4444445555555555555554 45555555555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=8.8e-16  Score=131.58  Aligned_cols=151  Identities=29%  Similarity=0.390  Sum_probs=74.8

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      ++.++..+|++. .+|+.++.+..+..+++.+|.++.  +|+..-+++.|++|+...|-+. .+|+.++.+.+|..|++.
T Consensus       139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR  214 (565)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence            333444444443 344445555555555555555554  3333333555555555555554 566666666666666666


Q ss_pred             cCCCCCccccc--------------------ccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          189 SQIPLSFLYLE--------------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       189 ~n~~~~~~~~~--------------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      .|.+. +.| +                    .-....+++++..||+..|+++..|+   .+..+++|+.||+++|.+++
T Consensus       215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd---e~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD---EICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch---HHHHhhhhhhhcccCCcccc
Confidence            66543 222 1                    00012344555555555555555543   33444555555555555555


Q ss_pred             CCCCcccCCCCCcCEEecccCcC
Q 041140          249 SLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      . |+ .++++ +|+.|-+.+|.+
T Consensus       290 L-p~-sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  290 L-PY-SLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             C-Cc-ccccc-eeeehhhcCCch
Confidence            3 22 45555 555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=2.8e-15  Score=115.00  Aligned_cols=134  Identities=21%  Similarity=0.294  Sum_probs=119.1

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      +.++++++.|.+++|+++.  +|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..    ++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg----fgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG----FGS  100 (264)
T ss_pred             ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc----cCC
Confidence            6678899999999999998  8999999999999999999998 89999999999999999998765 45666    999


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      ++.|+.||+++|++.... +++.+-.+..|+-|++++|.|.-  .|..++++++|+.|.+.+|.+
T Consensus       101 ~p~levldltynnl~e~~-lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             Cchhhhhhcccccccccc-CCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCch
Confidence            999999999999998874 45667778899999999999964  444799999999999999975

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.43  E-value=6.3e-13  Score=126.15  Aligned_cols=158  Identities=21%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccC-----------------CCCCCEEECCCCCCCCCCcchh
Q 041140           91 VLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLD-----------------LKHLVYLELSNNNFEKAQLPVF  151 (275)
Q Consensus        91 v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~-----------------l~~L~~L~Ls~n~l~~~~~p~~  151 (275)
                      +..|++++|.+..+..  ..|+.|++++|++++ +|.....                 ...|++|++++|+++.  +|..
T Consensus       284 L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~--LP~l  360 (788)
T PRK15387        284 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS--LPTL  360 (788)
T ss_pred             cCEEECcCCccccccccccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC--CCCC
Confidence            3344555555444322  357777777777765 3321111                 0234455555555544  3322


Q ss_pred             hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140          152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN  231 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  231 (275)
                         ..+|+.|++++|.++ .+|..   +.+|+.|++++|.+.+ .|.       ..++|+.|++++|.+++.|..     
T Consensus       361 ---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~-------l~s~L~~LdLS~N~LssIP~l-----  420 (788)
T PRK15387        361 ---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLTSLPML-----  420 (788)
T ss_pred             ---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCC-------cccCCCEEEccCCcCCCCCcc-----
Confidence               123444555555554 34432   2456777777776653 221       124688888888888877632     


Q ss_pred             CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                       ..+|+.|++++|+++.  .|..+..+++|+.|+|++|+|+|.
T Consensus       421 -~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        421 -PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             -hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCch
Confidence             2467889999999985  455788999999999999999985

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.42  E-value=5.6e-14  Score=122.04  Aligned_cols=186  Identities=25%  Similarity=0.188  Sum_probs=130.9

Q ss_pred             CCcEEEEEcCCCCCCCCCc---------cccccccCCCCccee----ecCccccCC-CCCCEEECCCCCCCCC---Ccch
Q 041140           88 TGHVLELRLGNPFLHDDEP---------FWLEDYKDETSKLIG----KINPSLLDL-KHLVYLELSNNNFEKA---QLPV  150 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~~---------~~L~~l~l~~n~l~~----~lp~~l~~l-~~L~~L~Ls~n~l~~~---~~p~  150 (275)
                      ..+++.++++++.+.....         ..|+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.   .++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            3579999999988763211         238889999998873    333455666 8999999999999842   1444


Q ss_pred             hhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--
Q 041140          151 FLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS--  224 (275)
Q Consensus       151 ~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~--  224 (275)
                      .+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.........+..+++|++|++++|.+++..  
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            566778899999999998843    34455667899999999998764432222223667889999999999988641  


Q ss_pred             chhhhh-CCCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140          225 DWFLVT-NMLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       225 ~~~~~~-~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      .+...+ ...+.|++|++++|.+++..   ....+..+++|+.+++++|.++.
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            111111 12478999999999987421   12345566889999999999874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.41  E-value=8.7e-14  Score=120.82  Aligned_cols=184  Identities=23%  Similarity=0.141  Sum_probs=127.7

Q ss_pred             CcEEEEEcCCCCCCC--C----------CccccccccCCCCcceeecCccccCCCC---CCEEECCCCCCCCCC---cch
Q 041140           89 GHVLELRLGNPFLHD--D----------EPFWLEDYKDETSKLIGKINPSLLDLKH---LVYLELSNNNFEKAQ---LPV  150 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~--l----------~~~~L~~l~l~~n~l~~~lp~~l~~l~~---L~~L~Ls~n~l~~~~---~p~  150 (275)
                      ..++.++++++.+..  .          ....|+.+++++|.+.+..+..+..+..   |++|++++|.+++..   +..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            447888888887662  0          1136788889999888766665555555   999999999887421   334


Q ss_pred             hhhCC-ccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC-
Q 041140          151 FLGSM-GSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS-  224 (275)
Q Consensus       151 ~~~~l-~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~-  224 (275)
                      .+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+.........+..+++|++|++++|.+++.. 
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            45666 8899999999998843    33456677889999999987764322111122455679999999999887652 


Q ss_pred             -chhhhhCCCCCCcEEeccCCcCCCCCCCcccC----CCCCcCEEecccCcCc
Q 041140          225 -DWFLVTNMLPSLQVLKLSACSLHNSLPELPIA----NFSSLYTLDLSYNEFD  272 (275)
Q Consensus       225 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~L~~N~l~  272 (275)
                       .+...+..+++|++|++++|.+++..+.....    ..+.|++|++++|.++
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             23445677889999999999888631211111    2478999999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.38  E-value=7.4e-12  Score=119.30  Aligned_cols=160  Identities=23%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140           92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF  168 (275)
Q Consensus        92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l  168 (275)
                      +.++++++.+..++.   ..++.|++++|.++ .+|..+.  ++|++|++++|.++.  +|..+.  .+|+.|++++|.+
T Consensus       181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        181 TELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             eEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCcc
Confidence            344444444333322   24566666777666 3554433  467777777777665  555432  3566666666666


Q ss_pred             CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhh-h----------h-----CC
Q 041140          169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL-V----------T-----NM  232 (275)
Q Consensus       169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~-~----------~-----~~  232 (275)
                      . .+|..+.  .+|++|++++|.+.. .|..    +.  ++|+.|++++|++++.|.... .          +     ..
T Consensus       254 ~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~----l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l  323 (754)
T PRK15370        254 T-ELPERLP--SALQSLDLFHNKISC-LPEN----LP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL  323 (754)
T ss_pred             C-cCChhHh--CCCCEEECcCCccCc-cccc----cC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence            5 5555442  356666666665542 2322    21  356666666666655432000 0          0     01


Q ss_pred             CCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      .++|+.|++++|.+++. +. .+  .++|+.|++++|+|+
T Consensus       324 ~~sL~~L~Ls~N~Lt~L-P~-~l--~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        324 PPGLKTLEAGENALTSL-PA-SL--PPELQVLDVSKNQIT  359 (754)
T ss_pred             cccceeccccCCccccC-Ch-hh--cCcccEEECCCCCCC
Confidence            24677777777777653 32 23  257888999888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.37  E-value=3e-14  Score=121.90  Aligned_cols=180  Identities=18%  Similarity=0.143  Sum_probs=114.1

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRHI  161 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L  161 (275)
                      ...++|.|..|.|..++.      ..|+.+++++|+++..-|.+|.+++.|..|-+.+ |.|+.. ....|+.+..|+-|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHH
Confidence            568999999998887665      3678889999999888888888888887766555 888873 22345555555555


Q ss_pred             ECCCCCCCCCCccc------------------------ccCCCCCCeEEcccCCCCCc----------------------
Q 041140          162 DLSRAEFTGMIPYQ------------------------LGNLSNLQYLDLSSQIPLSF----------------------  195 (275)
Q Consensus       162 ~L~~n~l~~~lp~~------------------------l~~l~~L~~L~Ls~n~~~~~----------------------  195 (275)
                      .+.-|++.-...+.                        +..+..++++.+..|.+...                      
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            55555544322233                        33444444444443331000                      


Q ss_pred             ----------------------------------ccccc--cccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEE
Q 041140          196 ----------------------------------LYLEN--LSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL  239 (275)
Q Consensus       196 ----------------------------------~~~~~--l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  239 (275)
                                                        .+...  -..+.++++|+.|++++|.+++..  ..++.....+++|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~--~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE--DGAFEGAAELQEL  303 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh--hhhhcchhhhhhh
Confidence                                              00000  013677888888999998888873  3456666677777


Q ss_pred             eccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       240 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      .|..|++... ....|..+..|+.|+|.+|+|+
T Consensus       304 ~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  304 YLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             hcCcchHHHH-HHHhhhccccceeeeecCCeeE
Confidence            7777766543 4445667777777777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.36  E-value=2.9e-12  Score=122.04  Aligned_cols=165  Identities=25%  Similarity=0.277  Sum_probs=117.8

Q ss_pred             CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      ..++.|++++|.+..++.   .+|+.|++++|+++ .+|..+.  ..|+.|++++|.+..  +|..+.  .+|++|++++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECcC
Confidence            468889999998876543   47888899998887 4666543  468888888888875  776654  4788888888


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCccccccc-------------ccc--cCCCCCCeeeccCCCCCCCCchhhhh
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENL-------------SWL--SGLSLLKHLDLTGVDLSTASDWFLVT  230 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-------------~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~  230 (275)
                      |++. .+|..+.  ++|++|++++|.+... |....             ..+  .-.++|+.|++++|.+++.|.   .+
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~---~l  344 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA---SL  344 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh---hh
Confidence            8887 5776553  5788888888876542 21100             000  112478888888888887753   22


Q ss_pred             CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                        .++|+.|++++|+++.. |. .+  .++|++|++++|+|++
T Consensus       345 --~~sL~~L~Ls~N~L~~L-P~-~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        345 --PPELQVLDVSKNQITVL-PE-TL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             --cCcccEEECCCCCCCcC-Ch-hh--cCCcCEEECCCCcCCC
Confidence              26899999999999853 33 33  3689999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=5.5e-12  Score=119.82  Aligned_cols=52  Identities=15%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCC
Q 041140           90 HVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEK  145 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~  145 (275)
                      +++.|++.+|.+..++.  ..|+.|++++|+++. +|..   .++|+.|++++|.++.
T Consensus       223 ~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        223 HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH  276 (788)
T ss_pred             CCCEEEccCCcCCCCCCCCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh
Confidence            56677777777666544  366777777777663 4432   2344555555554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=2.4e-13  Score=116.80  Aligned_cols=148  Identities=26%  Similarity=0.259  Sum_probs=97.9

Q ss_pred             cEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           90 HVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      -|+.++++.|.+..++.     .++.+.-+..|+..+.+|..++.++.|..|++++|.+..  +|.+++.+..||+|+++
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccc
Confidence            47888888886655443     122222233334445666667777777777777777776  77777777777777777


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      .|+|. .+|..+..+..++.+-.++|++....+..    +.+|.+|..||+.+|.+...|+   .++++.+|++|.+++|
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~----l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG----LKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGN  538 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhccccccccChHH----hhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCC
Confidence            77776 67776666666666666666665444433    6677777777777777777653   6677777777777777


Q ss_pred             cCC
Q 041140          245 SLH  247 (275)
Q Consensus       245 ~l~  247 (275)
                      .|.
T Consensus       539 pfr  541 (565)
T KOG0472|consen  539 PFR  541 (565)
T ss_pred             ccC
Confidence            776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.30  E-value=1.9e-13  Score=127.76  Aligned_cols=169  Identities=27%  Similarity=0.298  Sum_probs=112.4

Q ss_pred             CcEEEEEcCCCCCCCCCcc-------------------------------ccccccCCCCcceeecCccccCCCCCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEPF-------------------------------WLEDYKDETSKLIGKINPSLLDLKHLVYLE  137 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~~-------------------------------~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~  137 (275)
                      ..+..|+|..|.+..++..                               .|+.|++.+|.++...-+.+.++++|+.|+
T Consensus       310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            4688999999887664331                               233456677777776666677778888888


Q ss_pred             CCCCCCCCCCcch-hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeecc
Q 041140          138 LSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT  216 (275)
Q Consensus       138 Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~  216 (275)
                      |++|.+..  +|. .+.++..|+.|++++|++. .+|..+.+++.|++|...+|.+. ..| +    +..+++|+.+|++
T Consensus       390 LsyNrL~~--fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e----~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  390 LSYNRLNS--FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E----LAQLPQLKVLDLS  460 (1081)
T ss_pred             eccccccc--CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h----hhhcCcceEEecc
Confidence            88887776  443 5667777888888888877 67777777888888877777665 233 3    6777788888888


Q ss_pred             CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      .|+++... ++.. -..++|++||+++|.-... ....+..+.++...++.-|
T Consensus       461 ~N~L~~~~-l~~~-~p~p~LkyLdlSGN~~l~~-d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  461 CNNLSEVT-LPEA-LPSPNLKYLDLSGNTRLVF-DHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cchhhhhh-hhhh-CCCcccceeeccCCccccc-chhhhHHhhhhhheecccC
Confidence            88777652 1111 1226788888887753221 2334555556655555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.6e-13  Score=122.36  Aligned_cols=169  Identities=22%  Similarity=0.259  Sum_probs=142.3

Q ss_pred             cEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           90 HVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ..+..|++.|.+..++.     ..|+.+.+..|.+. .+|+.++++..|++++++.|+++.  +|..++.++ |+.|.++
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEe
Confidence            35667788887776544     35677777777774 688899999999999999999998  898898887 8999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|++. .+|+.++....|..||.+.|.+.. .|..    ++++.+|+.|++..|++...|+   .+..+ .|..||++.|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsq----l~~l~slr~l~vrRn~l~~lp~---El~~L-pLi~lDfScN  221 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRRNHLEDLPE---ELCSL-PLIRLDFSCN  221 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhhhhhhhCCH---HHhCC-ceeeeecccC
Confidence            99998 899999999999999999998763 3444    8999999999999999998864   55555 5889999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +++.  +|..|.++++|++|-|.+|.++.+
T Consensus       222 kis~--iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  222 KISY--LPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             ceee--cchhhhhhhhheeeeeccCCCCCC
Confidence            9986  566899999999999999998753

>PLN03210 Resistant to P

Probab=99.28  E-value=4.7e-11  Score=120.10  Aligned_cols=80  Identities=29%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      +|+.++++++...+.+|. ++.+++|++|++++|..-.. +|..+.++++|++|++++|...+.+|..+ ++++|++|++
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            344555555444444443 45555666666655543333 55566666666666666554444555443 4555555555


Q ss_pred             ccC
Q 041140          188 SSQ  190 (275)
Q Consensus       188 s~n  190 (275)
                      ++|
T Consensus       712 sgc  714 (1153)
T PLN03210        712 SGC  714 (1153)
T ss_pred             CCC
Confidence            554

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=2.7e-12  Score=101.17  Aligned_cols=86  Identities=37%  Similarity=0.390  Sum_probs=22.4

Q ss_pred             CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-cCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140          130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS  208 (275)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~  208 (275)
                      +.+|+.|++++|.++.  ++ .+..+++|++|++++|+++ .+.+.+ ..+++|++|++++|.+.....   +..+..++
T Consensus        41 l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~  113 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNE---LEPLSSLP  113 (175)
T ss_dssp             -TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCC---CGGGGG-T
T ss_pred             hcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHH---hHHHHcCC
Confidence            4444555555555444  21 2344445555555555554 232222 234445555555554432211   11234444


Q ss_pred             CCCeeeccCCCCCC
Q 041140          209 LLKHLDLTGVDLST  222 (275)
Q Consensus       209 ~L~~L~L~~n~l~~  222 (275)
                      +|+.|++.+|.++.
T Consensus       114 ~L~~L~L~~NPv~~  127 (175)
T PF14580_consen  114 KLRVLSLEGNPVCE  127 (175)
T ss_dssp             T--EEE-TT-GGGG
T ss_pred             CcceeeccCCcccc
Confidence            45555555444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=3.6e-11  Score=107.81  Aligned_cols=170  Identities=29%  Similarity=0.403  Sum_probs=134.4

Q ss_pred             CcEEEEEcCCCCCCCCCc----c--ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP----F--WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~--~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.+++.++.+.+++.    .  .|+.|++++|++. .+|..+..++.|+.|++++|.++.  +|......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence            357888888888776554    3  6888899998886 455567889999999999999988  777776888999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  242 (275)
                      +++|++. .+|..+..+..|+++.+++|... ..+..    +.++.++..+.+.+|++...+.   .++.+++++.|+++
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~----~~~~~~l~~l~l~~n~~~~~~~---~~~~l~~l~~L~~s  263 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS----LSNLKNLSGLELSNNKLEDLPE---SIGNLSNLETLDLS  263 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh----hhhcccccccccCCceeeeccc---hhccccccceeccc
Confidence            9999998 78887767777999999988422 12222    6778888888888888877533   56778889999999


Q ss_pred             CCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          243 ACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +|.++.. ..  ++.+.+++.|++++|.++.
T Consensus       264 ~n~i~~i-~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         264 NNQISSI-SS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccccc-cc--ccccCccCEEeccCccccc
Confidence            9999875 33  8889999999999998764

>PLN03150 hypothetical protein; Provisional

Probab=99.17  E-value=9.7e-11  Score=110.57  Aligned_cols=107  Identities=25%  Similarity=0.275  Sum_probs=73.0

Q ss_pred             CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140          133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~  212 (275)
                      ++.|+|++|.+++. +|..+..+++|++|+|++|.+.|.+|..++.+++|+.|++++|.+.+..|..    ++++++|+.
T Consensus       420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES----LGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH----HhcCCCCCE
Confidence            55677777777766 7777777777777777777777777777777777777777777777666655    677777777


Q ss_pred             eeccCCCCCCCCchhhhhCC-CCCCcEEeccCCcC
Q 041140          213 LDLTGVDLSTASDWFLVTNM-LPSLQVLKLSACSL  246 (275)
Q Consensus       213 L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l  246 (275)
                      |++++|.++|..  +..++. ..++..+++.+|..
T Consensus       495 L~Ls~N~l~g~i--P~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        495 LNLNGNSLSGRV--PAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             EECcCCcccccC--ChHHhhccccCceEEecCCcc
Confidence            777777777662  223332 23556667776653

>PLN03210 Resistant to P

Probab=99.14  E-value=5.7e-10  Score=112.38  Aligned_cols=127  Identities=23%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140          130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL  209 (275)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~  209 (275)
                      .++|+.|++++|..... +|..++++++|++|++++|...+.+|..+ .+++|++|++++|......|.       ...+
T Consensus       777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------~~~n  847 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------ISTN  847 (1153)
T ss_pred             cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-------cccc
Confidence            35677788887766555 88888888888888888876555777765 678888888888744322221       2357


Q ss_pred             CCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC-cCCCCCCCcccCCCCCcCEEecccCc
Q 041140          210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC-SLHNSLPELPIANFSSLYTLDLSYNE  270 (275)
Q Consensus       210 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~N~  270 (275)
                      |+.|++++|.++..|.   .+..+++|+.|++++| ++..  .+..+..+++|+.++++++.
T Consensus       848 L~~L~Ls~n~i~~iP~---si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        848 ISDLNLSRTGIEEVPW---WIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCEeECCCCCCccChH---HHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCc
Confidence            8899999999887753   6788999999999986 4544  33367788888888888764

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.14  E-value=5.8e-12  Score=118.00  Aligned_cols=130  Identities=27%  Similarity=0.256  Sum_probs=88.3

Q ss_pred             CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCcccccccccccCC
Q 041140          129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGL  207 (275)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l  207 (275)
                      .++.|+.|.+.+|.+++. .-+.+.++++|+.|+|++|++. .+|. .+.+++.|++|+||+|++. ..|.+    +..+
T Consensus       357 ~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~  429 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDT----VANL  429 (1081)
T ss_pred             hhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHH----HHhh
Confidence            356677777777777776 4455667777777777777776 5565 5567777777777777765 33444    6677


Q ss_pred             CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140          208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE  270 (275)
Q Consensus       208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~  270 (275)
                      +.|+.|...+|++...|    .+..++.|+.+|++.|+++....+... -.++|++||+++|.
T Consensus       430 ~~L~tL~ahsN~l~~fP----e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLLSFP----ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCceeech----hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            77777777777777765    455677777777777777665333222 22677777777775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=3.3e-12  Score=106.31  Aligned_cols=136  Identities=27%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      .+.-...|+++|+++|.|+.  +.++..-.++++.|++++|.+. .+ ..+..+++|+.||+++|.+......     -.
T Consensus       279 ~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gw-----h~  349 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGW-----HL  349 (490)
T ss_pred             ecchHhhhhhccccccchhh--hhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhh-----Hh
Confidence            34445789999999999987  7888888999999999999987 33 4488899999999999976532111     24


Q ss_pred             CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ++.+++.|.++.|.+....    .++++-+|..||+++|+|...-.-..++++|-|+++.|.+|++.+.
T Consensus       350 KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhcCEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5678889999999887653    5677889999999999987542335689999999999999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.1e-10  Score=92.05  Aligned_cols=130  Identities=27%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhh-CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      +.+...+++|+|++|.|+.  +. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|.+....+.-    ..
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l----~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGL----DK   85 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHH----HH
T ss_pred             ccccccccccccccccccc--cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccch----HH
Confidence            4566678999999999987  33 455 5789999999999998 454 5788999999999999987543211    24


Q ss_pred             CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEecc
Q 041140          206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLS  267 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~  267 (275)
                      .+++|++|++++|++....+ ...+..+++|+.|++.+|.++.. ..   ..+..+|+|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            68999999999999988754 45677899999999999999865 22   246788999999754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.03  E-value=2e-11  Score=104.87  Aligned_cols=163  Identities=21%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC-CCCCCCCcc-cccCCCCCCe
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPY-QLGNLSNLQY  184 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~-~l~~l~~L~~  184 (275)
                      .+...+++..|+++...|.+|..+++|+.|||++|+|+.+ -|..|..+++|.+|-+.+ |+|+ .+|. .|+++..++.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            4556678899999877777899999999999999999998 899999999988887766 8998 5665 6777877777


Q ss_pred             EEcccCCCCCccccc---------------cc-----ccccCCCCCCeeeccCCCCCCC---C-----------------
Q 041140          185 LDLSSQIPLSFLYLE---------------NL-----SWLSGLSLLKHLDLTGVDLSTA---S-----------------  224 (275)
Q Consensus       185 L~Ls~n~~~~~~~~~---------------~l-----~~l~~l~~L~~L~L~~n~l~~~---~-----------------  224 (275)
                      |.+.-|.+.-.....               ..     ..+..+..++.+.+..|.+...   +                 
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            777666543211111               00     0133333444444443331100   0                 


Q ss_pred             ---c-------------------------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140          225 ---D-------------------------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL  264 (275)
Q Consensus       225 ---~-------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  264 (275)
                         +                                     -...++++++|+.|+|++|++++. .+.+|....+++.|
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-hhhhhcchhhhhhh
Confidence               0                                     023467788888888888888876 66678888888888


Q ss_pred             ecccCcCc
Q 041140          265 DLSYNEFD  272 (275)
Q Consensus       265 ~L~~N~l~  272 (275)
                      .|..|+|.
T Consensus       304 ~L~~N~l~  311 (498)
T KOG4237|consen  304 YLTRNKLE  311 (498)
T ss_pred             hcCcchHH
Confidence            88888763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6.7e-11  Score=102.80  Aligned_cols=182  Identities=22%  Similarity=0.218  Sum_probs=120.0

Q ss_pred             CcEEEEEcCCCCCCCCC--------ccccccccCCCCcceeecCcc-ccCCCCCCEEECCCCCCCCCCcchhhhCCccCC
Q 041140           89 GHVLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKINPS-LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLR  159 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~  159 (275)
                      ..|+.+||+.|-|....        ..+|+.|+++.|.+.-..... -..+++|+.|.++.|.++...+-.....+++|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            45788888888766532        246778888888876433332 235678888888888887654555666788888


Q ss_pred             EEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--c--hhhhhCCCCC
Q 041140          160 HIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS--D--WFLVTNMLPS  235 (275)
Q Consensus       160 ~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~--~--~~~~~~~l~~  235 (275)
                      .|++..|..-+.-......+..|+.|||++|.+-......   ..+.++.|+.|+++.+.+....  +  .......+++
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            8888888532222223345677888888888765443222   2677888888888888877652  1  0111345788


Q ss_pred             CcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |++|++..|++.+.-.-..+..+++|+.|.+..|.|+-
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            99999999988765222345556677888877777753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=3.6e-11  Score=100.16  Aligned_cols=130  Identities=25%  Similarity=0.220  Sum_probs=108.7

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .|+.+++++|.++ .+.+++.-++.++.|++++|.+...   ..+..+.+|+.||+++|.++ .+...-.++.+++.|.+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            5777999999886 6777888889999999999999873   34888999999999999998 45444457788999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      ++|.+.      .+..+.++-+|..||+.+|++..... ...++++|.|+++.|.+|.+.+.
T Consensus       360 a~N~iE------~LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIE------TLSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHh------hhhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcccc
Confidence            999764      23337888999999999999998753 55789999999999999999874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=4.3e-10  Score=100.79  Aligned_cols=167  Identities=33%  Similarity=0.365  Sum_probs=128.4

Q ss_pred             EEEcCCCCC-CCCCc----cccccccCCCCcceeecCccccCCC-CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           93 ELRLGNPFL-HDDEP----FWLEDYKDETSKLIGKINPSLLDLK-HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        93 ~l~l~~~~~-~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      .+++..+.+ .+...    ..++.+++.+|.++ .+++....+. +|+.|++++|.+..  +|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCc
Confidence            466666655 32222    25777888888887 5666666674 99999999999987  7778899999999999999


Q ss_pred             CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140          167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL  246 (275)
Q Consensus       167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  246 (275)
                      ++. .+|...+..+.|+.|++++|.+... |..    ......|+.+.+++|.....+   ..+..++++..+.+.+|++
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~----~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPE----IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccC-chh----hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCcee
Confidence            998 7887777889999999999988643 332    345566999999999654443   2567788888888999988


Q ss_pred             CCCCCCcccCCCCCcCEEecccCcCce
Q 041140          247 HNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       247 ~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ...  +..++.+++++.|++++|+++.
T Consensus       245 ~~~--~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         245 EDL--PESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eec--cchhccccccceeccccccccc
Confidence            763  4468889999999999998763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=2.5e-11  Score=108.60  Aligned_cols=147  Identities=23%  Similarity=0.299  Sum_probs=127.1

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS  189 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~  189 (275)
                      ...+++.|++. ++|..+..+..|+.+.++.|.+..  +|..++++..|.+|+++.|+++ .+|..+..++ |+.|-+++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            34677888886 688888889999999999999987  8999999999999999999999 8999988887 89999999


Q ss_pred             CCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      |++. ..|..    ++...+|..|+.+.|.+...++   .++.+.+|+.|.+..|++... |+ .+..++ |..||++.|
T Consensus       153 Nkl~-~lp~~----ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~l-p~-El~~Lp-Li~lDfScN  221 (722)
T KOG0532|consen  153 NKLT-SLPEE----IGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDL-PE-ELCSLP-LIRLDFSCN  221 (722)
T ss_pred             Cccc-cCCcc----cccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhC-CH-HHhCCc-eeeeecccC
Confidence            9886 45555    7888999999999999999864   788899999999999999875 55 566554 899999999


Q ss_pred             cCc
Q 041140          270 EFD  272 (275)
Q Consensus       270 ~l~  272 (275)
                      +++
T Consensus       222 kis  224 (722)
T KOG0532|consen  222 KIS  224 (722)
T ss_pred             cee
Confidence            975

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.2e-10  Score=97.96  Aligned_cols=178  Identities=19%  Similarity=0.159  Sum_probs=122.6

Q ss_pred             CcEEEEEcCCCCCCCCC-------ccccccccCCCCcceeec--CccccCCCCCCEEECCCCCCCCCCcch-hhhCCccC
Q 041140           89 GHVLELRLGNPFLHDDE-------PFWLEDYKDETSKLIGKI--NPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSL  158 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~-------~~~L~~l~l~~n~l~~~l--p~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L  158 (275)
                      ..+.++.|.+.......       ..+++.|+++.|-+..-.  ......+++|+.|+++.|.+... ... .-..+.+|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhh
Confidence            34666677766654433       146778888888777432  23345688888899988887653 221 12256788


Q ss_pred             CEEECCCCCCCCC-CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCc
Q 041140          159 RHIDLSRAEFTGM-IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ  237 (275)
Q Consensus       159 ~~L~L~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  237 (275)
                      +.|.+++|.++-. +-..+..+|+|+.|++..|.........    ..-+..|+.|+|++|++...+. ....+.++.|+
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~  274 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLN  274 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCccccccc-ccccccccchh
Confidence            8888888888732 2223446788999999888532222222    3456789999999999988763 34678899999


Q ss_pred             EEeccCCcCCCCCCCcc-----cCCCCCcCEEecccCcCc
Q 041140          238 VLKLSACSLHNSLPELP-----IANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       238 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~N~l~  272 (275)
                      .|+++.+.+...-.++.     ...+++|++|++..|++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            99999998876533322     356789999999999983

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.84  E-value=6.4e-10  Score=94.30  Aligned_cols=146  Identities=21%  Similarity=0.171  Sum_probs=81.7

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcc---hhhhCCccCCEEECCCCCCCCC-------------CcccccCCCCCCeEEcccC
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLP---VFLGSMGSLRHIDLSRAEFTGM-------------IPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p---~~~~~l~~L~~L~L~~n~l~~~-------------lp~~l~~l~~L~~L~Ls~n  190 (275)
                      +...+.|++++||+|.+....++   ..+..+..|++|+|.+|.+.-.             .-..++.-++|+++..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            44456777777777776554122   2344566677777777665410             1112334455666666665


Q ss_pred             CCCCc----------------------------ccccccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEe
Q 041140          191 IPLSF----------------------------LYLENLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLK  240 (275)
Q Consensus       191 ~~~~~----------------------------~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~  240 (275)
                      ++...                            ........+.+++.|+.||+..|.++..  ..+...+..++.|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            54322                            1101112356677777777777777654  22344566677777777


Q ss_pred             ccCCcCCCCCCCc---c-cCCCCCcCEEecccCcCc
Q 041140          241 LSACSLHNSLPEL---P-IANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       241 L~~n~l~~~~~~~---~-l~~l~~L~~L~L~~N~l~  272 (275)
                      +++|.+.......   . -...++|+++++.+|.++
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            7777776541110   1 123567778888877765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=2.8e-09  Score=69.29  Aligned_cols=61  Identities=33%  Similarity=0.392  Sum_probs=47.2

Q ss_pred             CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140          208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      ++|++|++++|+++..+  ...+..+++|++|++++|+++.. ++..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCcC
Confidence            46778888888877765  24667788888888888888765 677788888888888888875

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.74  E-value=2e-09  Score=91.29  Aligned_cols=183  Identities=20%  Similarity=0.158  Sum_probs=134.9

Q ss_pred             CcEEEEEcCCCCCCCCCc----------cccccccCCCCcceee-------------cCccccCCCCCCEEECCCCCCCC
Q 041140           89 GHVLELRLGNPFLHDDEP----------FWLEDYKDETSKLIGK-------------INPSLLDLKHLVYLELSNNNFEK  145 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----------~~L~~l~l~~n~l~~~-------------lp~~l~~l~~L~~L~Ls~n~l~~  145 (275)
                      ++++.++||.|.|+.-..          .+|+.|.+.+|++...             ...-...-+.|+++..++|.+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            489999999998765322          4788999999998622             12234556889999999999876


Q ss_pred             C---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCC
Q 041140          146 A---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGV  218 (275)
Q Consensus       146 ~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n  218 (275)
                      .   .+...+...+.|+.+.+.+|.+.-.    +...+..+++|+.||+.+|.++.......-..+..+++|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            3   1334566778999999999988621    23456789999999999998764433332233677889999999999


Q ss_pred             CCCCCC--chhhhh-CCCCCCcEEeccCCcCCCC---CCCcccCCCCCcCEEecccCcC
Q 041140          219 DLSTAS--DWFLVT-NMLPSLQVLKLSACSLHNS---LPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       219 ~l~~~~--~~~~~~-~~l~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      .+....  .+...+ ...|+|+.+.+.+|.++..   .....+...+.|..|+|++|.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            998652  233333 3468999999999999754   1223456678999999999998

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=4.6e-09  Score=68.28  Aligned_cols=58  Identities=38%  Similarity=0.588  Sum_probs=28.6

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      +|++|++++|.++.. .+..+..+++|++|++++|++...-|..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            445555555555542 2234455555555555555555333334455555555555554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=4.9e-10  Score=103.05  Aligned_cols=126  Identities=29%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140          133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~  212 (275)
                      |.+.+.++|.+..  +...+.-++.|++|+|+.|++.. . +.+..+++|++||++.|.+.......    ...+ .|+.
T Consensus       166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~vp~l~----~~gc-~L~~  236 (1096)
T KOG1859|consen  166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRHVPQLS----MVGC-KLQL  236 (1096)
T ss_pred             HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhccccccc----hhhh-hhee
Confidence            3344444454443  44444444555555555555541 1 24444555555555555433111110    1111 2455


Q ss_pred             eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140          213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      |.+.+|.++...    .+.++++|+.||+++|-+.+..--..++.+..|+.|+|.+|.+
T Consensus       237 L~lrnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  237 LNLRNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeecccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            555555444432    2334445555555555444432222344444555555555543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.58  E-value=1.1e-07  Score=56.94  Aligned_cols=38  Identities=42%  Similarity=1.040  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCcccCceEec
Q 041140           48 QSEREALLRFKQDLK-DPANRLALWS-D--GNCCTWAGVVCN   85 (275)
Q Consensus        48 ~~~~~~L~~~~~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~   85 (275)
                      ++|+++|++||+++. ++...+.+|. .  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            679999999999997 4667899993 2  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=1.1e-07  Score=92.55  Aligned_cols=177  Identities=24%  Similarity=0.224  Sum_probs=110.8

Q ss_pred             cEEEEEcCCCCCCC----CCccccccccCCCCcc-eeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140           90 HVLELRLGNPFLHD----DEPFWLEDYKDETSKL-IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL  163 (275)
Q Consensus        90 ~v~~l~l~~~~~~~----l~~~~L~~l~l~~n~l-~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  163 (275)
                      .+..+.+-+|.+..    ....+|++|-+..|.. ...++. .|..++.|+.||+++|.--+. +|..++.+-+|++|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccc
Confidence            44555555555432    2223577777777762 334444 366689999999998654444 9999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          164 SRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       164 ~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      ++..+. .+|..++++++|.+|++..+......+..    ...+++|++|.+..-...........+..+..|+.+....
T Consensus       603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cCCCcc-ccchHHHHHHhhheeccccccccccccch----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999988 88999999999999999877543333332    4558888888887655333322233344444444444332


Q ss_pred             CcC-----------------------CC-CCCCcccCCCCCcCEEecccCcCc
Q 041140          244 CSL-----------------------HN-SLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       244 n~l-----------------------~~-~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      ...                       .. ......+..+.+|+.|.+.+..+.
T Consensus       678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             chhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            211                       00 001224566777888887777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.45  E-value=2.5e-09  Score=98.48  Aligned_cols=128  Identities=30%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeEE
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYLD  186 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L~  186 (275)
                      .|.+.++++|.+. .+..++.-++.|+.|+|++|+++..   ..+..+++|++|||++|.+. .+|.. ...+. |+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence            4555677777775 4556677789999999999999984   38899999999999999998 67763 23344 99999


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      +.+|.++.      +..+.++.+|+.||+++|-+.+... ...+..+..|+.|+|.+|.+.-
T Consensus       239 lrnN~l~t------L~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNNALTT------LRGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ecccHHHh------hhhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcccc
Confidence            99996642      2337889999999999999988854 3455667889999999998854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=6e-08  Score=87.60  Aligned_cols=148  Identities=28%  Similarity=0.275  Sum_probs=98.4

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      ++.+.+..|.+.. +-..+..+.+|+.+++.+|.+..  +...+..+++|++|++++|.++..  ..+..++.|+.|+++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS  148 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence            4445556666553 23346777888888888888877  444467788888888888888743  235667778888888


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEeccc
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY  268 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  268 (275)
                      +|.+.....      +..++.|+.+++++|.+...... . ...+.+++.+++.+|.+...   ..+..+..+..+++..
T Consensus       149 ~N~i~~~~~------~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i---~~~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  149 GNLISDISG------LESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREI---EGLDLLKKLVLLSLLD  217 (414)
T ss_pred             cCcchhccC------CccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcc---cchHHHHHHHHhhccc
Confidence            887753321      55577888888888888776421 1 46677888888888877643   2344444555556666


Q ss_pred             CcCc
Q 041140          269 NEFD  272 (275)
Q Consensus       269 N~l~  272 (275)
                      |.++
T Consensus       218 n~i~  221 (414)
T KOG0531|consen  218 NKIS  221 (414)
T ss_pred             ccce
Confidence            6653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.2e-08  Score=85.27  Aligned_cols=159  Identities=25%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-c-CCCCCCe
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-G-NLSNLQY  184 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~-~l~~L~~  184 (275)
                      .|+.+.+.++++.+.+...+++-.+|+.|+++.+ .++...+.--+.+++.|+.|++++|.+.......+ . --++|+.
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            3445556666666666666677777777777764 34432233345667777777777777654322111 1 1245666


Q ss_pred             EEcccCCCC-CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCE
Q 041140          185 LDLSSQIPL-SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT  263 (275)
Q Consensus       185 L~Ls~n~~~-~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  263 (275)
                      |+++++.-. +......  ...++++|.+|||+.|..-.. ..+..+.+++.|++|.++.|..-..-.-..+...|+|.+
T Consensus       291 LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence            777765211 0001111  146788999999998754433 256677888999999999886532101123567788888


Q ss_pred             EecccC
Q 041140          264 LDLSYN  269 (275)
Q Consensus       264 L~L~~N  269 (275)
                      ||+.+.
T Consensus       368 Ldv~g~  373 (419)
T KOG2120|consen  368 LDVFGC  373 (419)
T ss_pred             EEeccc
Confidence            887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=1.1e-07  Score=85.79  Aligned_cols=165  Identities=27%  Similarity=0.243  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCCCC----CCc-cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           91 VLELRLGNPFLHD----DEP-FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        91 v~~l~l~~~~~~~----l~~-~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      +..++++.|.+..    +.. ..+..+++.+|.+.+.... +..+++|++|++++|.|+..   ..+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc---cchhhccchhhheecc
Confidence            4455566666655    222 4677888888888754332 56788999999999999874   3456677799999999


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |.+. .+ ..+..++.|+.+++++|.+....+.   . ...+.+++.+.+.+|.+.....    +..+..+..+++..|.
T Consensus       150 N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  150 NLIS-DI-SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSLLDNK  219 (414)
T ss_pred             Ccch-hc-cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhccccc
Confidence            9987 33 3455688899999999877543321   0 2567788888999988877632    2233445555777887


Q ss_pred             CCCCCCCcccCCCCC--cCEEecccCcCc
Q 041140          246 LHNSLPELPIANFSS--LYTLDLSYNEFD  272 (275)
Q Consensus       246 l~~~~~~~~l~~l~~--L~~L~L~~N~l~  272 (275)
                      ++.. -  .+..+..  |+.+++++|.+.
T Consensus       220 i~~~-~--~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  220 ISKL-E--GLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             ceec-c--CcccchhHHHHHHhcccCccc
Confidence            7643 1  2333333  788888888775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.5e-08  Score=84.57  Aligned_cols=136  Identities=28%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK  211 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~  211 (275)
                      .||++||++..++...+-.-+..+.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+..-.......+  +.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL--LSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH--HHhhhhHh
Confidence            4666777766665543444555666677777777777666666666666677777666532212111111  45556666


Q ss_pred             eeeccCCCCCCCC---------------------------chhhhhCCCCCCcEEeccCC-cCCCCCCCcccCCCCCcCE
Q 041140          212 HLDLTGVDLSTAS---------------------------DWFLVTNMLPSLQVLKLSAC-SLHNSLPELPIANFSSLYT  263 (275)
Q Consensus       212 ~L~L~~n~l~~~~---------------------------~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~  263 (275)
                      .|+++.|.++...                           .+.....++|+|.+|||++| .++.. ....+.+++-|++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQH  342 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchhee
Confidence            6666665444321                           11222345666667777665 33332 2334556666666


Q ss_pred             EecccCc
Q 041140          264 LDLSYNE  270 (275)
Q Consensus       264 L~L~~N~  270 (275)
                      |.++.+.
T Consensus       343 lSlsRCY  349 (419)
T KOG2120|consen  343 LSLSRCY  349 (419)
T ss_pred             eehhhhc
Confidence            6666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.19  E-value=2.7e-06  Score=67.50  Aligned_cols=84  Identities=24%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc-CCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL  210 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L  210 (275)
                      +...+||++|.+...   ..+..++.|.+|.++.|+++. +.+.+. .+++|+.|.+.+|.+....   ++..+..+++|
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~---dl~pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELG---DLDPLASCPKL  115 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhh---hcchhccCCcc
Confidence            334455555554331   233444555555555555552 222222 2344555555555443221   11113444455


Q ss_pred             CeeeccCCCCCC
Q 041140          211 KHLDLTGVDLST  222 (275)
Q Consensus       211 ~~L~L~~n~l~~  222 (275)
                      ++|.+-+|..+.
T Consensus       116 ~~Ltll~Npv~~  127 (233)
T KOG1644|consen  116 EYLTLLGNPVEH  127 (233)
T ss_pred             ceeeecCCchhc
Confidence            555555544443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2.1e-06  Score=51.56  Aligned_cols=36  Identities=33%  Similarity=0.499  Sum_probs=18.7

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT  169 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~  169 (275)
                      +|++|++++|+++.  +|+.+.+|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            45555555555554  4544555555555555555554

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=1.6e-06  Score=71.91  Aligned_cols=148  Identities=20%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchh----hhCCccCCEEECCCCCCCCC----Cc---------ccccCCCCCCeEEcc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVF----LGSMGSLRHIDLSRAEFTGM----IP---------YQLGNLSNLQYLDLS  188 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~----~~~l~~L~~L~L~~n~l~~~----lp---------~~l~~l~~L~~L~Ls  188 (275)
                      .+.++++|+..+||+|.+... .|+.    +...+.|.+|.+++|.+.-.    +-         .....-|.|+.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456777888888888877665 5543    34556778888877766411    11         112234556666666


Q ss_pred             cCCCCCc-------------------------ccc---c-ccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCc
Q 041140          189 SQIPLSF-------------------------LYL---E-NLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQ  237 (275)
Q Consensus       189 ~n~~~~~-------------------------~~~---~-~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~  237 (275)
                      .|++...                         .|.   . ..-.+..+.+|+.|++..|.++-.  ..+...+..++.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            6554311                         010   0 001245567888888888877754  22344566777788


Q ss_pred             EEeccCCcCCCCCCCcccC-----CCCCcCEEecccCcCcee
Q 041140          238 VLKLSACSLHNSLPELPIA-----NFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       238 ~L~L~~n~l~~~~~~~~l~-----~l~~L~~L~L~~N~l~g~  274 (275)
                      .|.+.+|.++.......+.     ..++|..|.+.+|.+.|.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            8888888776542222221     246778888888877654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2.9e-07  Score=77.02  Aligned_cols=59  Identities=24%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC-----cccCCCCCcCEEe
Q 041140          206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-----LPIANFSSLYTLD  265 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~l~~l~~L~~L~  265 (275)
                      .++.+..|+|+.|++....+ ...+.++++|+.|.++++.+.+.+-.     -.++++++++.|+
T Consensus       222 ~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            34555566666666666542 34566777777777777776543111     1356666666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=6.1e-07  Score=85.31  Aligned_cols=137  Identities=22%  Similarity=0.275  Sum_probs=80.3

Q ss_pred             ccccccCCCCcce-eecCcccc-CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeE
Q 041140          108 WLEDYKDETSKLI-GKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL  185 (275)
Q Consensus       108 ~L~~l~l~~n~l~-~~lp~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L  185 (275)
                      +|++|++++...- ..-|..++ .+|.|+.|.+.+-.+....+-....++++|..||+++..++ .+ ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence            4555666553322 12222233 36777777777766655334455567777777887777776 23 566777777777


Q ss_pred             EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc----hhhhhCCCCCCcEEeccCCcCCCC
Q 041140          186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD----WFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      .+.+=.+..   ...+..+.++++|+.||+|.......+.    +...-..+|.|+.||.++..+.+.
T Consensus       201 ~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  201 SMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            766543332   1223336677777777777765554421    122233467777777777666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=2.4e-06  Score=83.31  Aligned_cols=101  Identities=26%  Similarity=0.267  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCC--CCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCE
Q 041140           89 GHVLELRLGNPF--LHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRH  160 (275)
Q Consensus        89 ~~v~~l~l~~~~--~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~  160 (275)
                      ..++.+-+..|.  +.....      ..|..||++.|.--+.+|..++++-+|++|++++..++.  +|..+.++++|.+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhhe
Confidence            357777777764  222211      357789999988889999999999999999999999997  9999999999999


Q ss_pred             EECCCCCCCCCCcccccCCCCCCeEEcccCC
Q 041140          161 IDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI  191 (275)
Q Consensus       161 L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~  191 (275)
                      |++..+.....+|.....+.+|++|.+..-.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            9999888766666767779999999987653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=4.9e-06  Score=49.96  Aligned_cols=37  Identities=38%  Similarity=0.509  Sum_probs=27.1

Q ss_pred             ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140          156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      ++|++|++++|+++ .+|..++++++|++|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888887 67777788888888888888765

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=7e-07  Score=66.62  Aligned_cols=90  Identities=21%  Similarity=0.212  Sum_probs=55.9

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhhCC-ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLGSM-GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      +....+|+..++++|.+..  +|+.+... +.+++|++++|+++ .+|..+..++.|+.|+++.|.+.-. |..    +.
T Consensus        49 l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~v----i~  120 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRV----IA  120 (177)
T ss_pred             HhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHH----HH
Confidence            3444556666777777766  56555443 46777777777777 5677777777777777777765422 222    44


Q ss_pred             CCCCCCeeeccCCCCCCCC
Q 041140          206 GLSLLKHLDLTGVDLSTAS  224 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~  224 (275)
                      .+.++..|+..+|.+...+
T Consensus       121 ~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHHhHHHhcCCCCccccCc
Confidence            4666666666666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.91  E-value=1.3e-05  Score=63.74  Aligned_cols=123  Identities=22%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             EEEEcCCCCCCCCCcc-----ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           92 LELRLGNPFLHDDEPF-----WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        92 ~~l~l~~~~~~~l~~~-----~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      .++++++..+...+.+     ....+++++|++.. ++ .|..++.|++|.+++|.|+.. -|.--.-+++|++|.+.+|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhh-cc-cCCCccccceEEecCCcceee-ccchhhhccccceEEecCc
Confidence            4556666655444332     34457778888753 22 256678888899999988884 3433334577889999888


Q ss_pred             CCCCCCc--ccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC
Q 041140          167 EFTGMIP--YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD  219 (275)
Q Consensus       167 ~l~~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~  219 (275)
                      .+. .+-  ..+..+|+|++|.+-+|..... .....-.+..+++|+.||+..-.
T Consensus        99 si~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   99 SIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             chh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhhh
Confidence            876 222  2456788888888888865422 22222336788888888887653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=6.6e-06  Score=68.26  Aligned_cols=169  Identities=17%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             CcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC--Ccc-------hhhhCCccCC
Q 041140           89 GHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA--QLP-------VFLGSMGSLR  159 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~--~~p-------~~~~~l~~L~  159 (275)
                      ..+++++|++|.|+....              ..+...+.+-.+|+..+++.-.....  +++       +.+-.+++|+
T Consensus        30 d~~~evdLSGNtigtEA~--------------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          30 DELVEVDLSGNTIGTEAM--------------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             cceeEEeccCCcccHHHH--------------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            468888998884332211              11223345556777777765432211  133       3455789999


Q ss_pred             EEECCCCCCCCCCcc----cccCCCCCCeEEcccCCCCCccccccc----------ccccCCCCCCeeeccCCCCCCCCc
Q 041140          160 HIDLSRAEFTGMIPY----QLGNLSNLQYLDLSSQIPLSFLYLENL----------SWLSGLSLLKHLDLTGVDLSTASD  225 (275)
Q Consensus       160 ~L~L~~n~l~~~lp~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l----------~~l~~l~~L~~L~L~~n~l~~~~~  225 (275)
                      ..+++.|.|.-..|+    .++.-+.|.+|.+++|....+ ....+          .....-|.|+.+....|++...+.
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            999999999876665    456788999999999965322 11111          123456789999999999876632


Q ss_pred             --hhhhhCCCCCCcEEeccCCcCCCCCC----CcccCCCCCcCEEecccCcCc
Q 041140          226 --WFLVTNMLPSLQVLKLSACSLHNSLP----ELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       226 --~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~l~~L~~L~L~~N~l~  272 (275)
                        +...+..-..|..+.+..|.|.....    -..+..+.+|++||+++|-||
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence              23334444688899999888753311    123456788999999999875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=8.5e-06  Score=77.64  Aligned_cols=136  Identities=22%  Similarity=0.266  Sum_probs=99.5

Q ss_pred             CCCCEEECCCCCCCCCCcchhhhC-CccCCEEECCCCCCCCC-CcccccCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140          131 KHLVYLELSNNNFEKAQLPVFLGS-MGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS  208 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~  208 (275)
                      .+|++|++++...-....|..++. +|+|++|.+.+-.+... .-.-..++|+|..||+|+..+...      ..+++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhccc
Confidence            578999998876544335555554 79999999998776532 223345789999999999866532      3388999


Q ss_pred             CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC------cccCCCCCcCEEecccCcCcee
Q 041140          209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE------LPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +|+.|.+.+-.+..... ...+-.+++|+.||+|....... +.      +.-..+|+|+.||.|+..+++.
T Consensus       196 nLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             cHHHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            99999998888877653 44566799999999998866554 21      1123589999999999887653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=3.5e-06  Score=70.74  Aligned_cols=163  Identities=19%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             ccccCCCCcce--eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCC-CcccccCCCCCCeEE
Q 041140          110 EDYKDETSKLI--GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYLD  186 (275)
Q Consensus       110 ~~l~l~~n~l~--~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L~  186 (275)
                      +.+++..|.++  .++...+.+++.|+.|+++.|.+... +...-..+.+|++|-+.+..+.-. ....+..+|.++.|.
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            33444444555  23333456788888888888887764 322213456788888877776532 233556777888888


Q ss_pred             cccCCCCCcccc----c-------cc--------------ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140          187 LSSQIPLSFLYL----E-------NL--------------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL  241 (275)
Q Consensus       187 Ls~n~~~~~~~~----~-------~l--------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  241 (275)
                      ++.|........    +       .+              .....++++..+-+..|.+..... -.....+|.+.-|+|
T Consensus       153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNL  231 (418)
T ss_pred             hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh-cccCCCCCcchhhhh
Confidence            877733211000    0       00              001223455555555565554421 123345677778889


Q ss_pred             cCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          242 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       242 ~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +.|++.....-+.+..+++|..|.++.|++..+
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            999887663445688899999999999988654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.79  E-value=1.3e-05  Score=65.98  Aligned_cols=106  Identities=26%  Similarity=0.310  Sum_probs=57.8

Q ss_pred             CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC--CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA--EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      .+..|+.+.+.+..++..   ..+-.+++|+.|.++.|  +.++.++.....+|+|+++++++|++..   ...+..+..
T Consensus        41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccchhhh
Confidence            344455555555555432   22334667777777777  5555555444555777777777776542   222223556


Q ss_pred             CCCCCeeeccCCCCCCCCc-hhhhhCCCCCCcEEe
Q 041140          207 LSLLKHLDLTGVDLSTASD-WFLVTNMLPSLQVLK  240 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~  240 (275)
                      +.+|..|++.+|..+.... --..+.-+++|.+|+
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            6667777777766655421 122334456666555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.72  E-value=2.1e-06  Score=64.08  Aligned_cols=84  Identities=20%  Similarity=0.300  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccc-cCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           88 TGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSL-LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      ..+++.+++++|                  ++. .+|+.| .+++.+++|++++|.++.  +|.++..++.|+.|+++.|
T Consensus        52 ~~el~~i~ls~N------------------~fk-~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   52 GYELTKISLSDN------------------GFK-KFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             CceEEEEecccc------------------hhh-hCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccC
Confidence            346677777776                  664 345444 456788899999999988  8888999999999999999


Q ss_pred             CCCCCCcccccCCCCCCeEEcccCCCC
Q 041140          167 EFTGMIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      .+. ..|.-+..+.++.+|+..+|...
T Consensus       111 ~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  111 PLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            988 67777777888888888887554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00029  Score=62.74  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=41.4

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCC-CCCCCCcccccCCCCCCeE
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIPYQLGNLSNLQYL  185 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~lp~~l~~l~~L~~L  185 (275)
                      .++.|++++|.++ .+|.   -..+|+.|.++++ .++.  +|..+  ..+|++|.+++| .+. .+|.      .|+.|
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence            3566777777654 3452   1346888888874 4433  66544  357888999888 443 5554      35556


Q ss_pred             EcccC
Q 041140          186 DLSSQ  190 (275)
Q Consensus       186 ~Ls~n  190 (275)
                      ++..+
T Consensus       118 ~L~~n  122 (426)
T PRK15386        118 EIKGS  122 (426)
T ss_pred             EeCCC
Confidence            66554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=3.1e-05  Score=63.82  Aligned_cols=108  Identities=24%  Similarity=0.213  Sum_probs=72.1

Q ss_pred             hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC--CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhh
Q 041140          152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ--IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLV  229 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~  229 (275)
                      .-.+..|+.|.+.+..++ ++ ..+-.+++|++|.++.|  .+.+..+..    ...+++|+++++++|.+..... ...
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~lst-l~p  111 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKDLST-LRP  111 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCccccccc-cch
Confidence            334556777777766665 22 34567889999999999  444444333    5566999999999999886532 345


Q ss_pred             hCCCCCCcEEeccCCcCCCCC--CCcccCCCCCcCEEec
Q 041140          230 TNMLPSLQVLKLSACSLHNSL--PELPIANFSSLYTLDL  266 (275)
Q Consensus       230 ~~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~L  266 (275)
                      +..+++|..|++..|..+..-  -...+.-+++|++||-
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            667888999999888665420  1123455677777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.0015  Score=58.21  Aligned_cols=127  Identities=20%  Similarity=0.176  Sum_probs=66.9

Q ss_pred             EEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCCC
Q 041140           91 VLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus        91 v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      ...|+++++.+..++.  ..|+.|.++++.-...+|..+  .++|++|++++| .+..  +|.      +|++|++..+.
T Consensus        54 l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s--LP~------sLe~L~L~~n~  123 (426)
T PRK15386         54 SGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG--LPE------SVRSLEIKGSA  123 (426)
T ss_pred             CCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc--ccc------ccceEEeCCCC
Confidence            4566666666555443  246666666533334555443  357888888887 5543  554      36666666555


Q ss_pred             CC--CCCcccccCCCCCCeEEcccCCCCCccccccccccc-CC-CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          168 FT--GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS-GL-SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       168 l~--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      ..  +.+|.      +|+.|.+.++.....  ..    +. .+ ++|++|++++|.....|.   .+  ..+|+.|+++.
T Consensus       124 ~~~L~~LPs------sLk~L~I~~~n~~~~--~~----lp~~LPsSLk~L~Is~c~~i~LP~---~L--P~SLk~L~ls~  186 (426)
T PRK15386        124 TDSIKNVPN------GLTSLSINSYNPENQ--AR----IDNLISPSLKTLSLTGCSNIILPE---KL--PESLQSITLHI  186 (426)
T ss_pred             CcccccCcc------hHhheeccccccccc--cc----cccccCCcccEEEecCCCcccCcc---cc--cccCcEEEecc
Confidence            32  23333      355565543221100  00    01 12 467777777776554332   11  14677777765


Q ss_pred             C
Q 041140          244 C  244 (275)
Q Consensus       244 n  244 (275)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            5

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=1.9e-05  Score=65.78  Aligned_cols=85  Identities=20%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140          130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL  209 (275)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~  209 (275)
                      +.+.+.|+.-++.+.++   .....|+.|+.|.|+-|+++. + ..+..|++|++|+|..|.+....   .+..+.++++
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sld---EL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLD---ELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHH---HHHHHhcCch
Confidence            34455566666666553   233456666666666666652 2 23455666666666666554322   2223455666


Q ss_pred             CCeeeccCCCCCC
Q 041140          210 LKHLDLTGVDLST  222 (275)
Q Consensus       210 L~~L~L~~n~l~~  222 (275)
                      |+.|.|..|.-.|
T Consensus        90 Lr~LWL~ENPCc~  102 (388)
T KOG2123|consen   90 LRTLWLDENPCCG  102 (388)
T ss_pred             hhhHhhccCCccc
Confidence            6666666554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=5.5e-05  Score=63.12  Aligned_cols=58  Identities=24%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccC
Q 041140          129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n  190 (275)
                      +++.|+.|.|+-|.|+..   ..+..+++|+.|+|..|.|. .+.+  .+.++|+|+.|.|..|
T Consensus        39 kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence            345555555555555442   22444555555555555544 2221  3344555555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.07  E-value=0.018  Score=42.62  Aligned_cols=122  Identities=16%  Similarity=0.196  Sum_probs=55.9

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCc-ccccCCCCCCeEEcccCCCCCcccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIP-YQLGNLSNLQYLDLSSQIPLSFLYLENLSWL  204 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  204 (275)
                      .+.++++|+.+.+.. .+... -...+..+++|+.+.+..+ +. .++ ..+..+++++.+.+.++ ........    +
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-LKSIGDNA----F   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T-EE-TTT----T
T ss_pred             HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-cc-ccceeeeeccccccccccccc-cccccccc----c
Confidence            466777888888774 45442 3345677778888888764 54 333 35667778888888653 22122222    6


Q ss_pred             cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC
Q 041140          205 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY  262 (275)
Q Consensus       205 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  262 (275)
                      ..+++|+.+.+..+ +...+  ...+... .|+.+.+.. .+... ....|.++++|+
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~--~~~f~~~-~l~~i~~~~-~~~~i-~~~~F~~~~~l~  129 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIG--SSSFSNC-NLKEINIPS-NITKI-EENAFKNCTKLK  129 (129)
T ss_dssp             TT-TTECEEEETTT--BEEH--TTTTTT--T--EEE-TT-B-SS-----GGG------
T ss_pred             cccccccccccCcc-ccEEc--hhhhcCC-CceEEEECC-CccEE-CCccccccccCC
Confidence            66788888888654 44332  1245555 778887765 33222 445666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0034  Score=31.43  Aligned_cols=18  Identities=39%  Similarity=0.565  Sum_probs=9.1

Q ss_pred             CCEEECCCCCCCCCCcccc
Q 041140          158 LRHIDLSRAEFTGMIPYQL  176 (275)
Q Consensus       158 L~~L~L~~n~l~~~lp~~l  176 (275)
                      |++|++++|+++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.72  E-value=0.0082  Score=30.00  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=12.4

Q ss_pred             CCCEEECCCCCCCCCCcchhhhC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGS  154 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~  154 (275)
                      +|++|++++|.++.  +|+.+++
T Consensus         1 ~L~~Ldls~n~l~~--ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS--IPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESE--EGTTTTT
T ss_pred             CccEEECCCCcCEe--CChhhcC
Confidence            35666677766663  6655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.44  E-value=0.00041  Score=63.57  Aligned_cols=183  Identities=25%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCCCCCCc----------cccccccCCCCcceeecC----ccccCC-CCCCEEECCCCCCCCC---Ccchhh
Q 041140           91 VLELRLGNPFLHDDEP----------FWLEDYKDETSKLIGKIN----PSLLDL-KHLVYLELSNNNFEKA---QLPVFL  152 (275)
Q Consensus        91 v~~l~l~~~~~~~l~~----------~~L~~l~l~~n~l~~~lp----~~l~~l-~~L~~L~Ls~n~l~~~---~~p~~~  152 (275)
                      ...++|.+|.+.+-..          ..++.++++.|.+.+.--    ..+-.. +.+++|++..|.++..   .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4455666665554211          345556666666653211    112222 4455566666655543   133344


Q ss_pred             hCCccCCEEECCCCCCCC----CCccccc----CCCCCCeEEcccCCCCCcccccccccccCCCC-CCeeeccCCCCCCC
Q 041140          153 GSMGSLRHIDLSRAEFTG----MIPYQLG----NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTA  223 (275)
Q Consensus       153 ~~l~~L~~L~L~~n~l~~----~lp~~l~----~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~-L~~L~L~~n~l~~~  223 (275)
                      .....++.++++.|.+..    .++..+.    ...++++|.+++|.++...-...-..+...+. +..+++..|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            445556666666666531    1222222    35566666666665432100000011233333 45566666666533


Q ss_pred             --CchhhhhCCC-CCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140          224 --SDWFLVTNML-PSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       224 --~~~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                        -.....+..+ +.++.++++.|.+++..   ....+..++.++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence              1122333444 55666667666665541   12234455566666666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.30  E-value=0.00027  Score=64.72  Aligned_cols=165  Identities=24%  Similarity=0.151  Sum_probs=110.5

Q ss_pred             cccccCCCCcceeecC----ccccCCCCCCEEECCCCCCCCCCcc---hhhhCC-ccCCEEECCCCCCCC----CCcccc
Q 041140          109 LEDYKDETSKLIGKIN----PSLLDLKHLVYLELSNNNFEKAQLP---VFLGSM-GSLRHIDLSRAEFTG----MIPYQL  176 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp----~~l~~l~~L~~L~Ls~n~l~~~~~p---~~~~~l-~~L~~L~L~~n~l~~----~lp~~l  176 (275)
                      +..+.+.+|.+.....    ..+...++|+.|++++|.+.+....   ..+... +.+++|++..|.+++    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677788888775433    3466788999999999999864221   222232 557888888888874    355566


Q ss_pred             cCCCCCCeEEcccCCCCCccccccccccc----CCCCCCeeeccCCCCCCC--CchhhhhCCCCC-CcEEeccCCcCCCC
Q 041140          177 GNLSNLQYLDLSSQIPLSFLYLENLSWLS----GLSLLKHLDLTGVDLSTA--SDWFLVTNMLPS-LQVLKLSACSLHNS  249 (275)
Q Consensus       177 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~----~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~-L~~L~L~~n~l~~~  249 (275)
                      .....++.++++.|.+...........+.    ...++++|.+.+|.++..  ..+...+...+. ++.+++..|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            77889999999999764211111111122    467899999999998854  113445566666 77899999998754


Q ss_pred             CC---CcccCCC-CCcCEEecccCcCce
Q 041140          250 LP---ELPIANF-SSLYTLDLSYNEFDN  273 (275)
Q Consensus       250 ~~---~~~l~~l-~~L~~L~L~~N~l~g  273 (275)
                      ..   ...+... ..+++++++.|.|+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            11   1134444 678999999999875

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.14  E-value=0.13  Score=37.96  Aligned_cols=107  Identities=11%  Similarity=0.144  Sum_probs=59.5

Q ss_pred             hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh
Q 041140          151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT  230 (275)
Q Consensus       151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  230 (275)
                      .+.++.+|+.+.+.. .+...-...+..+++|+.+.+..+ +.......    +.++++++.+.+.. .+...+  ...+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~--~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIG--DNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceee----eecccccccccccc-cccccc--cccc
Confidence            566778899999874 455223346778889999999875 44333333    77887899999965 443332  1256


Q ss_pred             CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      ..+++|+.+++..+ +... ....+.++ +|+.+.+..+
T Consensus        78 ~~~~~l~~i~~~~~-~~~i-~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEI-GSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             TT-TTECEEEETTT--BEE-HTTTTTT--T--EEE-TTB
T ss_pred             cccccccccccCcc-ccEE-chhhhcCC-CceEEEECCC
Confidence            67889999999765 4322 44567777 8888888753

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.03  E-value=0.019  Score=52.53  Aligned_cols=132  Identities=26%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             CCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCC-CCCCCCc----ccccCCCCCCeEEcccCC-CCCcccccccc
Q 041140          130 LKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIP----YQLGNLSNLQYLDLSSQI-PLSFLYLENLS  202 (275)
Q Consensus       130 l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~lp----~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~  202 (275)
                      .+.|+.+.+..+ .+....+-.....+++|+.|+++++ ......+    .....+.+|+.|+++.+. ++...-.    
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~----  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS----  262 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH----
Confidence            577777777665 3332112344556778888888763 2211111    233455778888887765 3322111    


Q ss_pred             ccc-CCCCCCeeeccCCC-CCCCCchhhhhCCCCCCcEEeccCCcCC-CCCCCcccCCCCCcCEEec
Q 041140          203 WLS-GLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLH-NSLPELPIANFSSLYTLDL  266 (275)
Q Consensus       203 ~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L  266 (275)
                      .+. .+++|+.|.+.++. ++... +......++.|++|+++++... +.........+++++.|.+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            122 36778888876666 44442 3334556777888888877543 2211112334555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.44  E-value=0.018  Score=52.69  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=6.5

Q ss_pred             CCCCCeeeccCCCC
Q 041140          207 LSLLKHLDLTGVDL  220 (275)
Q Consensus       207 l~~L~~L~L~~n~l  220 (275)
                      ++.|++|+++++..
T Consensus       294 ~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  294 CPSLRELDLSGCHG  307 (482)
T ss_pred             cCcccEEeeecCcc
Confidence            44455555554433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.63  E-value=0.077  Score=24.61  Aligned_cols=13  Identities=46%  Similarity=0.616  Sum_probs=4.6

Q ss_pred             CCCEEECCCCCCC
Q 041140          132 HLVYLELSNNNFE  144 (275)
Q Consensus       132 ~L~~L~Ls~n~l~  144 (275)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.20  E-value=0.0057  Score=50.09  Aligned_cols=82  Identities=17%  Similarity=0.078  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140           88 TGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      ..+++.||++.|.+..+.                   ..+..++.|..|+++.|.+.-  +|..++.+..+.++++..|.
T Consensus        41 ~kr~tvld~~s~r~vn~~-------------------~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~   99 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG-------------------KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNN   99 (326)
T ss_pred             cceeeeehhhhhHHHhhc-------------------cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccc
Confidence            367888888887433222                   223344555556666666554  56666666666666666666


Q ss_pred             CCCCCcccccCCCCCCeEEcccCC
Q 041140          168 FTGMIPYQLGNLSNLQYLDLSSQI  191 (275)
Q Consensus       168 l~~~lp~~l~~l~~L~~L~Ls~n~  191 (275)
                      .+ ..|.+++..+.++++++-.+.
T Consensus       100 ~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  100 HS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hh-hCCccccccCCcchhhhccCc
Confidence            55 556666666666666665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=0.035  Score=44.48  Aligned_cols=83  Identities=20%  Similarity=0.193  Sum_probs=55.1

Q ss_pred             ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC-CCccccccccccc-CCCCCCeeeccCCC-CCCCCchhhhhCC
Q 041140          156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP-LSFLYLENLSWLS-GLSLLKHLDLTGVD-LSTASDWFLVTNM  232 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~-~~~~~~~~l~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~  232 (275)
                      ..++.++-++..+...--+.+..++.++.|.+.++.- ..+.    +..++ -.++|+.|++++|. |+...  ...+.+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~  174 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGG--LACLLK  174 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhH--HHHHHH
Confidence            3578888888888766666778888888888887742 2221    11133 24688999999774 55442  346677


Q ss_pred             CCCCcEEeccCC
Q 041140          233 LPSLQVLKLSAC  244 (275)
Q Consensus       233 l~~L~~L~L~~n  244 (275)
                      +++|+.|.+.+-
T Consensus       175 lknLr~L~l~~l  186 (221)
T KOG3864|consen  175 LKNLRRLHLYDL  186 (221)
T ss_pred             hhhhHHHHhcCc
Confidence            788888777643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.56  E-value=0.13  Score=25.99  Aligned_cols=15  Identities=47%  Similarity=0.607  Sum_probs=8.2

Q ss_pred             CCcCEEecccCcCce
Q 041140          259 SSLYTLDLSYNEFDN  273 (275)
Q Consensus       259 ~~L~~L~L~~N~l~g  273 (275)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            466667777766654

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.12  E-value=0.48  Score=24.33  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=7.3

Q ss_pred             CCCCEEECCCCCCCC
Q 041140          131 KHLVYLELSNNNFEK  145 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~  145 (275)
                      ++|++|++++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.12  E-value=0.48  Score=24.33  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=7.3

Q ss_pred             CCCCEEECCCCCCCC
Q 041140          131 KHLVYLELSNNNFEK  145 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~  145 (275)
                      ++|++|++++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.82  E-value=0.0089  Score=49.00  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=73.5

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      ++..+...+.||++.|.+-.  +-..+.-++.|..|+++.|.+. .+|..++....++.+++..|..+ ..|.+    ++
T Consensus        37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s----~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS----QK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc----cc
Confidence            57778889999999998866  5667777888999999999987 78999998888999998888664 44555    78


Q ss_pred             CCCCCCeeeccCCCCCCC
Q 041140          206 GLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~  223 (275)
                      ..+.++++++-+|.++..
T Consensus       109 k~~~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFFRK  126 (326)
T ss_pred             ccCCcchhhhccCcchHH
Confidence            889999998888876543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.46  E-value=0.16  Score=45.23  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             cCCCCCCeeeccCCCCCCCC---chhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          205 SGLSLLKHLDLTGVDLSTAS---DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       205 ~~l~~L~~L~L~~n~l~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      .+++.|+.+.++.+......   .+...-..+..|+.+.|+++....+..-+.+..+++|+.+++-+.
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            34566666666655433221   001112234556666666665443323334555666666665544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.90  E-value=1.2  Score=23.12  Aligned_cols=14  Identities=43%  Similarity=0.555  Sum_probs=9.1

Q ss_pred             CCcCEEecccCcCc
Q 041140          259 SSLYTLDLSYNEFD  272 (275)
Q Consensus       259 ~~L~~L~L~~N~l~  272 (275)
                      .+|+.|++++|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45667777777664

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.84  E-value=1.3  Score=23.32  Aligned_cols=14  Identities=50%  Similarity=0.603  Sum_probs=10.1

Q ss_pred             CCcCEEecccCcCc
Q 041140          259 SSLYTLDLSYNEFD  272 (275)
Q Consensus       259 ~~L~~L~L~~N~l~  272 (275)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46777888887774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-04

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 46  CIQSEREALLRFKQDLKDPANRLALWSDGNCC--TWAGVVCNDSTGHVLELRLGNPFLHD 103
           C   +++ALL+ K+DL +P    +     +CC  TW GV+C+  T       L    L+ 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 104 DEPFWLED-----------YKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL 152
            +P+ +             Y    + L+G I P++  L  L YL +++ N   A +P FL
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFL 121
Query: 153 GSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
             + +L  +D S    +G +P  + +L NL
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           L G+I   L +  +L ++ LSNN     ++P ++G + +L  + LS   F+G IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 179 LSNLQYLDLSSQI 191
             +L +LDL++ +
Sbjct: 537 CRSLIWLDLNTNL 549

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 42/194 (21%)
Query: 99  PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL 158
           P L  +    L++   + +   GKI P+L +   LV L LS  N+    +P  LGS+  L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKL 444
Query: 159 RHIDLSRAEFTGMIPYQLGNLSNLQYL-----DLSSQIPLSFLYXXXXXXXXXXXXXXXX 213
           R + L      G IP +L  +  L+ L     DL+ +IP                     
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--------------------- 483
Query: 214 XXTGVDLSTASDWFLVTN------------MLPSLQVLKLSACSLHNSLPELPIANFSSL 261
             +G+   T  +W  ++N             L +L +LKLS  S   ++P   + +  SL
Sbjct: 484 --SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 540
Query: 262 YTLDLSYNEFDNTL 275
             LDL+ N F+ T+
Sbjct: 541 IWLDLNTNLFNGTI 554

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           L G+I   L +  +L ++ LSNN     ++P ++G + +L  + LS   F+G IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 179 LSNLQYLDLSSQI 191
             +L +LDL++ +
Sbjct: 534 CRSLIWLDLNTNL 546

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 42/194 (21%)
Query: 99  PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL 158
           P L  +    L++   + +   GKI P+L +   LV L LS  N+    +P  LGS+  L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKL 441
Query: 159 RHIDLSRAEFTGMIPYQLGNLSNLQYL-----DLSSQIPLSFLYXXXXXXXXXXXXXXXX 213
           R + L      G IP +L  +  L+ L     DL+ +IP                     
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--------------------- 480
Query: 214 XXTGVDLSTASDWFLVTN------------MLPSLQVLKLSACSLHNSLPELPIANFSSL 261
             +G+   T  +W  ++N             L +L +LKLS  S   ++P   + +  SL
Sbjct: 481 --SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 537
Query: 262 YTLDLSYNEFDNTL 275
             LDL+ N F+ T+
Sbjct: 538 IWLDLNTNLFNGTI 551

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (403), Expect = 2e-44
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 30/231 (12%)

Query: 45  GCIQSEREALLRFKQDLKDPANRLALWSDG-NCCTWAGVVCNDSTGHVLELRLGNPFLHD 103
             +  E   L+ FK  L D  N L  WS   N CT+ GV C      V  + L +  L  
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPL-- 62

Query: 104 DEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163
                        +     ++ SLL L  L  L LSN++     +  F     SL  +DL
Sbjct: 63  -------------NVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGF-KCSASLTSLDL 107

Query: 164 SRAEFTGMIP--YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLS 221
           SR   +G +     LG+ S L++L++SS    +  +   +S    L+ L+ LDL+   +S
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSS---NTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 222 -TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                 +++++    L+ L +S   +      + ++   +L  LD+S N F
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGD---VDVSRCVNLEFLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 4e-21
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 27/174 (15%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           K+ G +   +    +L +L++S+NNF    +P FLG   +L+H+D+S  + +G     + 
Sbjct: 189 KISGDV--DVSRCVNLEFLDVSSNNFS-TGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 178 NLSNLQYLDLSS-----QIP------LSFLYLE--NLS-----WLSG-LSLLKHLDLTGV 218
             + L+ L++SS      IP      L +L L     +     +LSG    L  LDL+G 
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 219 DLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                   +F        L+ L LS+ +    LP   +     L  LDLS+NEF
Sbjct: 305 HFYGAVPPFF---GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 118 KLIGKINPSL--LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
              G I P+L       L  L L NN F   ++P  L +   L  + LS    +G IP  
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437

Query: 176 LGNLSNLQYLDLSS-----QIPLSFLYLENLSWL---------------SGLSLLKHLDL 215
           LG+LS L+ L L       +IP   +Y++ L  L               S  + L  + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 216 TGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           +   L+     W      L +L +LKLS  S   ++P   + +  SL  LDL+ N F
Sbjct: 498 SNNRLTGEIPKWI---GRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.0 bits (206), Expect = 4e-18
 Identities = 56/178 (31%), Positives = 72/178 (40%), Gaps = 28/178 (15%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
              G + P       L  L LS+NNF        L  M  L+ +DLS  EF+G +P  L 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 178 NLS-NLQYLDLSS-----QIP----------LSFLYLEN-------LSWLSGLSLLKHLD 214
           NLS +L  LDLSS      I           L  LYL+N          LS  S L  L 
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 215 LTGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           L+   LS T          L  L+ LKL    L   +P+  +    +L TL L +N+ 
Sbjct: 425 LSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           +L G+I   +  L++L  L+LSNN+F    +P  LG   SL  +DL+   F G IP  + 
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 178 NLSN-LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
             S  +    ++ +            ++    + K     G  L          N L + 
Sbjct: 560 KQSGKIAANFIAGKRY---------VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
               +++             N  S+  LD+SYN  
Sbjct: 611 NPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNML 644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 48/162 (29%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           +  G  +  L  L       +++  +          + GS+  +D+S    +G IP ++G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

Query: 178 NLSNLQYLDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 232
           ++  L  L+L        IP     L  L+ L              DLS           
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNIL--------------DLS----------- 688

Query: 233 LPSLQVLKLSACSLHNSLP-ELP--IANFSSLYTLDLSYNEF 271
                          N L   +P  ++  + L  +DLS N  
Sbjct: 689 --------------SNKLDGRIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
               +  +DLSS+ PL+  +    S L  L+ L+ L L+   ++ +   F       SL 
Sbjct: 48  RDDKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK---CSASLT 103

Query: 238 VLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDNTL 275
            L LS  SL   +  L  + + S L  L++S N  D   
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  118 bits (299), Expect = 7e-32
 Identities = 66/265 (24%), Positives = 102/265 (38%), Gaps = 50/265 (18%)

Query: 46  CIQSEREALLRFKQDLKDPANRLALWSDGN---CCTWAGVVCNDST--GHVLELRLGNPF 100
           C   +++ALL+ K+DL +P   L+ W         TW GV+C+  T    V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 101 LHDDEP-------------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQ 147
           L    P              ++         L+G I P++  L  L YL +++ N     
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVS-GA 116

Query: 148 LPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-----QIPLSFLYLENLS 202
           +P FL  + +L  +D S    +G +P  + +L NL  +          IP S+     L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 203 ---WLSGLSL-------LKHLDLTGVDLS------TASDWFLVTNMLPSLQVLKLSACSL 246
               +S   L         +L+L  VDLS       AS  F       + Q + L+  SL
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF---GSDKNTQKIHLAKNSL 233

Query: 247 HNSLPELPIANFSSLYTLDLSYNEF 271
              L ++      +L  LDL  N  
Sbjct: 234 AFDLGKV--GLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL-RHIDLSRAEFTGMIPYQL 176
            L G + PS+  L +LV +    N      +P   GS   L   + +SR   TG IP   
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 177 GNLSNLQYLDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231
            NL NL ++DLS         + F   +N   +     L    L   DL           
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIH----LAKNSLAF-DLGKVGL------ 242

Query: 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
              +L  L L    ++ +LP+  +     L++L++S+N  
Sbjct: 243 -SKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
            L G  +      K+   + L+ N+     L   +G   +L  +DL      G +P  L 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLA-FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 178 NLSNLQYLDLSS-----QIPLSFLYLENLSWLS 205
            L  L  L++S      +IP     L+     +
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
            L   +   +   K+L  L+L NN      LP  L  +  L  +++S     G IP Q G
Sbjct: 232 SLAFDL-GKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 178 NLSNLQYLDLSS 189
           NL        ++
Sbjct: 289 NLQRFDVSAYAN 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 6e-17
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 3/155 (1%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQL 176
            L      + + L++L  L LSNN  +  +     + +  SL+ ++LS  +     P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
             +  L  L L++ + L     E L      + +++L L+   LST S+   +     +L
Sbjct: 192 HAIGRLFGLFLNN-VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
            +L LS  +L N +     A    L    L YN  
Sbjct: 251 TMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 22/173 (12%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
              +      L  L++  N   K +  +    +  L+ ++L   E + +        +NL
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 183 QYLDLS-----SQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLST 222
             L L            F+  +NL  L                 L  L+ L L+   +  
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 223 ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
                L      SL+ L+LS+  +    P         L+ L L+  +   +L
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 25/176 (14%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLP--VFLG-SMGSLRHIDLSRAEFTGMIPY 174
            + G  +     L +L YL LSN+      L    F+  +   L  ++L++ + + +   
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 175 QLGNLSNLQYLDLSS-QI-----PLSFLYLENL---------------SWLSGLSLLKHL 213
               L +L+ LDL   +I        +  LEN+               +  + +  L+ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 214 DLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            L  V L            L +L +L LS  ++  ++ +  +     L  LDL +N
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           K+    + +   L HL  L+L  N   +         + ++  I LS  ++  +      
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
            + +LQ L L   + L  +   + S    L  L  LDL+  +++  +D  L    L  L+
Sbjct: 452 LVPSLQRLMLRR-VALKNVD-SSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLE 507

Query: 238 VLKLSACSLHN-------SLPELPIANFSSLYTLDLSYNEFD 272
           +L L   +L           P   +   S L+ L+L  N FD
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 9/159 (5%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQ 175
              + +     L    +  L LSN+         FLG    +L  +DLS      +    
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 176 LGNLSNLQYLDLS-----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT 230
              L  L+Y  L           S   L N+ +L+         ++   L    D+    
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-- 325

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             L  L+ L +    +   +         +L  L LS +
Sbjct: 326 QWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNS 363

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 27/179 (15%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           +L    + +     +L  L L +N+ +K +   F     +L  +DLS    +        
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 178 NLSNLQYLDLSS-------QIPLSFLYLENLSWL---------------SGLSLLKHLDL 215
            L NLQ L LS+          L      +L  L                 +  L  L L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 216 TGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN--FSSLYTLDLSYNEF 271
             V L  + ++   +     S++ L LS   L  +          +++L  LDLSYN  
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNL 260

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 24/163 (14%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
             ++  L L++N   +     F      L  +D+     + + P     L  L+ L+L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 189 ----SQIPLSFLYLENLSWLS---------------GLSLLKHLDLTGVDLSTASDWFLV 229
                    +F +  NL+ L                    L  LDL+   LS+      V
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 230 TNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEF 271
              L +LQ L LS   +     E L I   SSL  L+LS N+ 
Sbjct: 143 Q--LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
           L   +L  L+LS NN            +  L +  L       +  + L  L N++YL+L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 188 SS---QIPLSFLYLENL--SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242
                +  +S   L  +       L  L+HL++   D+            L +L+ L LS
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINLKYLSLS 361

Query: 243 ACSLHNSLPELPIANF-----SSLYTLDLSYNEF 271
                 SL  L    F     S L+ L+L+ N+ 
Sbjct: 362 NSFT--SLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 38/186 (20%), Positives = 58/186 (31%), Gaps = 31/186 (16%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEK-AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
           K +     S   +  L  L L     +     P     + +L  +DLS      +    L
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 177 GNLSNLQYLDL-------------SSQIPLSFLYLENLSWL---------------SGLS 208
             L  L+ LDL                       L +L  L                 L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY 268
            LK +DL   +L+T            SL+ L L    + +   ++    F +L  LD+ +
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNN--QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 269 NEFDNT 274
           N FD T
Sbjct: 619 NPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 37/184 (20%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG------------------------ 153
            L    + S   LK L +L + +N+    +  +F G                        
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 154 ---SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSL 209
              +   L  ++L++ + + +       L +L+ LDL   +I              GL  
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL----TGQEWRGLEN 431

Query: 210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP--IANFSSLYTLDLS 267
           +  + L+       +        +PSLQ L L   +L N +   P       +L  LDLS
Sbjct: 432 IFEIYLSYNKYLQLTRNSFAL--VPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLS 488

Query: 268 YNEF 271
            N  
Sbjct: 489 NNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 17/169 (10%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR---------AEF 168
            L    N S   L  L Y  L  NN +       L  + ++R+++L R         A  
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG--VDLSTASDW 226
             +  +    L  L++L++      + +     +  +GL  LK+L L+     L T ++ 
Sbjct: 318 PKIDDFSFQWLKCLEHLNMED----NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
             V+     L +L L+   +     +   +    L  LDL  NE    L
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLNEIGQEL 421

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP 192
               + S+      Q+P  L +  ++  ++L+  +   +        S L  LD+     
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-- 59

Query: 193 LSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE 252
            +   LE       L +LK L+L   +LS  SD         +L  L L + S+   +  
Sbjct: 60  -TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQ-KIKN 114

Query: 253 LPIANFSSLYTLDLSYNEF 271
            P     +L TLDLS+N  
Sbjct: 115 NPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 20/148 (13%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFE-------KAQLPVFLGSMGSLRHIDLSRAEFTG 170
            +    +  L  L+ L  L+L +NN               FL  +  L  ++L    F  
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 171 MIPYQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW 226
           +      +L  L+ +DL     + +P S          +    LK L+L    +++    
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASV--------FNNQVSLKSLNLQKNLITSVEKK 602

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELP 254
                   +L  L +       +   + 
Sbjct: 603 VFGPA-FRNLTELDMRFNPFDCTCESIA 629

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  ++ + L L+ L +L+  ++N ++        S+ +L ++D+S              L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQV 238
           S+L+ L ++     SF         + L  L  LDL+   L   +   F   N L SLQV
Sbjct: 445 SSLEVLKMAGN---SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQV 498

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           L +S  +   SL   P    +SL  LD S N  
Sbjct: 499 LNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI 191
               L+LS N         F  S   L+ +DLSR E   +      +LS+L  L L+   
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-- 85

Query: 192 PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 251
             + +    L   SGLS L+ L     +L++  ++ +    L +L+ L ++   + +   
Sbjct: 86  --NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKL 141

Query: 252 ELPIANFSSLYTLDLSYNEF 271
               +N ++L  LDLS N+ 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 47/177 (26%), Positives = 67/177 (37%), Gaps = 25/177 (14%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQL-PVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
           +   G    S +DL  L +L+LS N                SL+++DLS       +   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 176 LGNLSNLQYLDLSS-----QIPLS-FLYLENLSWL---------------SGLSLLKHLD 214
              L  L++LD            S FL L NL +L               +GLS L+ L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 215 LTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + G          + T  L +L  L LS C L    P     + SSL  L++S+N F
Sbjct: 452 MAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNF 506

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 4/156 (2%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
            L    N  +  LK L  L +++N  +  +LP +  ++ +L H+DLS  +   +    L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
            L  +  L+LS  + L+ +          +  L  L L     S       +   L  L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQG-LAGLE 228

Query: 238 VLKLSACSL--HNSLPELPIANFSSLYTLDLSYNEF 271
           V +L         +L +   +    L  L +     
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
            +  I      L ++    L +   E+ +   +       +H++L   +F      +L +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG---WQHLELVNCKFGQFPTLKLKS 326

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWL-----------------SGLSLLKHLDLTGVDLS 221
           L  L +         S + L +L +L                  G + LK+LDL+   + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 222 TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           T S  FL    L  L+ L     +L          +  +L  LD+S+   
Sbjct: 387 TMSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
            L    + S      L  L+LS    +  +      S+  L  + L+      +      
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
            LS+LQ L        + L       +  L  LK L++    + +       +N L +L+
Sbjct: 98  GLSSLQKLVAVE----TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLE 152

Query: 238 VLKLSACSLHNSLPELPIANFSSL----YTLDLSYNEF 271
            L LS+  + +      +     +     +LDLS N  
Sbjct: 153 HLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 29/181 (16%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           ++    + +   L HL  L L+ N  +   L  F   + SL+ +         +  + +G
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIG 121

Query: 178 NLSNLQYLDLSS------QIPLSFLYLENLSWL---------------SGLSLLK----H 212
           +L  L+ L+++       ++P  F  L NL  L                 L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           LDL+   ++              L  L L       ++ +  I   + L    L   EF 
Sbjct: 182 LDLSLNPMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 273 N 273
           N
Sbjct: 239 N 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 30/155 (19%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
                 N     L  L  L+++ N+F++  LP     + +L  +DLS+ +   + P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
           +LS+LQ L++S           N   L                            L SLQ
Sbjct: 492 SLSSLQVLNMSHN---------NFFSLDTFPYKC---------------------LNSLQ 521

Query: 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           VL  S   +  S  +      SSL  L+L+ N+F 
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 38/179 (21%), Positives = 52/179 (29%), Gaps = 35/179 (19%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM------IP 173
           +  I P       L  L L NN      +   +  +  L    L   EF           
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 174 YQLGNLSNLQYLDLS--------SQIPLSFLYLENLSWL-------------SGLSLLKH 212
             L  L NL   +            I   F  L N+S               S     +H
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           L+L              T  L SL+ L  ++    N+  E+   +  SL  LDLS N  
Sbjct: 309 LELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGL 359

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 25/113 (22%)

Query: 180 SNLQYLDLS-----SQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGVD 219
            + + LDLS          SF     L  L                 LS L  L LTG  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 220 LST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + + A   F   + L SLQ L     +L  SL   PI +  +L  L++++N  
Sbjct: 88  IQSLALGAF---SGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLI 136

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 130 LKHLVYLELSNNNFEK------AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ 183
           +  +  ++ S N            L        ++  I+LS  + +          S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 184 YLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
            ++L     ++IP + L  EN +      LL  +DL    L+  SD F  T  LP L  +
Sbjct: 461 SINLMGNMLTEIPKNSLKDENEN-FKNTYLLTSIDLRFNKLTKLSDDFRATT-LPYLVGI 518

Query: 240 KLSACSLHNSLPELP--IANFSSLYTLDLSYN 269
            LS    +NS  + P    N S+L    +   
Sbjct: 519 DLS----YNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 21/174 (12%), Positives = 49/174 (28%), Gaps = 23/174 (13%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
               I  S         +   +NN     +   +  +  LR   +  + F      +   
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLSTA 223
             N +Y        L +  L++L+ +                 L  ++ +++      + 
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 224 SDWFLVTNMLPS------LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                    L        +Q++ +   +L     E  +     L  L+  YN+ 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 115 ETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY 174
           E  K   +        + +  + +  NN +   +   L  M  L  ++    +  G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 175 QLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT 230
             G+   L  L+L+    ++IP +F              +++L      L    + F   
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANF--------CGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 231 NMLPSLQVLKLSACSL----HNSLPELP--IANFSSLYTLDLSYNEF 271
           + +  +  +  S   +      +   L        ++ +++LS N+ 
Sbjct: 400 S-VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 22/164 (13%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEK------AQLPVFLGSMGSLRHIDLSRAEFTGM 171
           ++             L  + L  N   +              +   L  IDL   + T +
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 172 IP-YQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS-D 225
              ++   L  L  +DLS    S+ P   L   N S L G  +    D  G        +
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTLREWPE 560

Query: 226 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                 + PSL  L++      N + ++      ++  LD+  N
Sbjct: 561 GI---TLCPSLTQLQIG----SNDIRKVNEKITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 15/156 (9%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
            +   N +  +   L  ++L  N   K        ++  L  IDLS   F+   P Q  N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 179 LSNLQYLDLSSQIPLSFLYLENL--SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
            S L+   + +Q               ++    L  L +   D+       +   + P++
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-----VNEKITPNI 589

Query: 237 QVLKLSACSLHNSLPELP---IANFSSLYTLDLSYN 269
            VL +      N    +    +  +       L Y+
Sbjct: 590 SVLDIK----DNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 1/125 (0%)

Query: 147 QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206
           Q  V L S G +  + L     +G +P  +G L+ L+ L L S        L     +S 
Sbjct: 72  QPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131

Query: 207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 266
               +      +        +        L    +++     S+ +           +  
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQ 190

Query: 267 SYNEF 271
             N  
Sbjct: 191 LSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 27/254 (10%), Positives = 58/254 (22%), Gaps = 69/254 (27%)

Query: 65  ANRLALWS-DGNCCTWA---GVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLI 120
               A W+ +     W    GV  N S G V  L L                        
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEG------------------FGAS 94

Query: 121 GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMG------------------------ 156
           G++  ++  L  L  L L ++  +  +       +                         
Sbjct: 95  GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 157 -----SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLS-- 205
                 L    ++       I            +       + +  + + L  L      
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

Query: 206 --------GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 257
                        ++ +          D     + L  L  +++  C     LP   +  
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKW--DNLKDLTDVEVYNCPNLTKLPTF-LKA 271

Query: 258 FSSLYTLDLSYNEF 271
              +  ++++ N  
Sbjct: 272 LPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGM-IPYQ 175
           +L GK+ P+      L  L L+ N   +  +P  F G    + ++  +  +   +   + 
Sbjct: 341 QLEGKL-PAFGSEIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 176 LGNLSNLQYLDLSS-QIP-LSFLYLENL-SWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 232
             ++S +  +D S  +I  +     + L         +  ++L+   +S         + 
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF--ST 455

Query: 233 LPSLQVLKLSACSLHNSLPELP----------IANFSSLYTLDLSYNEF 271
              L  + L      N L E+P            N   L ++DL +N+ 
Sbjct: 456 GSPLSSINLM----GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
              I+ +       L  L+L+  +    +LP  L  + +L+ + LS  +F  +      N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 179 LSNLQYLDLS------SQIPLSFLYLENL-----------------SWLSGLSLLKHLDL 215
             +L +L +                LENL                   L  LS L+ L+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 216 TGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
           +  +  +           P L++L L+   L     + P  N   L  L+LS++  D 
Sbjct: 384 SYNEPLSLKTEAFKE--CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 5e-16
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 118 KLIGKINPSLL-DLKHLVYLELSNNNFEKAQL-PVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
               ++    L +L++L  L+LS+++ E +    + L ++  L+ ++LS  E   +    
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 176 LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 235
                 L+ LDL+          +  S    L LLK L+L+   L  +S+     + LP+
Sbjct: 396 FKECPQLELLDLAFT---RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPA 450

Query: 236 LQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEFDN 273
           LQ L L          +    +     L  L LS+ +  +
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 11/157 (7%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
           + +     +  +   L  L+L+    +         ++  L+ ++LS +           
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSL 236
            L  LQ+L+L          ++  + L  L  L+ L L+  DLS+     F     L  +
Sbjct: 447 GLPALQHLNLQG-NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF---TSLKMM 502

Query: 237 QVLKLSACSLHNSLPELPIANFSSLY--TLDLSYNEF 271
             + LS    HN L    I   S L    L+L+ N  
Sbjct: 503 NHVDLS----HNRLTSSSIEALSHLKGIYLNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 8/142 (5%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
                 LE S N             + +L  +DL+R +   +      +   L  L L++
Sbjct: 32  PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249
               + L     + LSG   LKHL      +S+     L      +L+ L L +  +  S
Sbjct: 91  ----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN--QKTLESLYLGSNHIS-S 143

Query: 250 LPELPIANFSSLYTLDLSYNEF 271
           +          L  LD   N  
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 16/154 (10%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
            N +   L +L +L+L+           F  S   L  + L+      M    L     L
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 183 QYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242
           ++L        + +   +   L     L+ L L    +S+             L+VL   
Sbjct: 108 KHLFFIQ----TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP--TEKLKVLDFQ 161

Query: 243 ACSLHNSLPELPIANFSSL-----YTLDLSYNEF 271
               +N++  L   + SSL      +L+L+ N+ 
Sbjct: 162 ----NNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 136 LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF 195
               N      ++P  L +  S   ++ S      +       L NL +LDL+       
Sbjct: 17  YNCENLGLN--EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC---QI 69

Query: 196 LYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
            ++   +       L  L LT   L   A       +   +L+ L      + +S+  +P
Sbjct: 70  YWIHEDT-FQSQHRLDTLVLTANPLIFMAETAL---SGPKALKHLFFIQTGI-SSIDFIP 124

Query: 255 IANFSSLYTLDLSYN 269
           + N  +L +L L  N
Sbjct: 125 LHNQKTLESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 11/151 (7%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
              +      L  L L+ N               +L+H+   +   + +    L N   L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 183 QYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242
           + L L S    + +    L        LK LD     +   S   + +  L     L L+
Sbjct: 132 ESLYLGS----NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS--LQQATNLSLN 185

Query: 243 ACSLHNSLPELP--IANFSSLYTLDLSYNEF 271
                N +  +     + +   +L+    + 
Sbjct: 186 LN--GNDIAGIEPGAFDSAVFQSLNFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 25/179 (13%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
            LI     +L   K L +L             + L +  +L  + L     + +   +  
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 178 NLSNLQYLDLS-----SQIPLSFLYLENLSWLS----------------GLSLLKHLDLT 216
               L+ LD                L+  + LS                  ++ + L+  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS--SLYTLDLSYNEFDN 273
           G          L  + + SL +           +           S+ +++L  + F N
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMSVESINLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 36/159 (22%), Positives = 51/159 (32%), Gaps = 11/159 (6%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS-MGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I P   D      L                 S + SL        +   + P     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 179 LSNLQYLDLSSQIPLSFLYLENLS--WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
           L  +    ++    L   Y  N+S       S L+ LDLT   LS           L +L
Sbjct: 251 LCEMSVESIN----LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL---VGLSTL 303

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
           + L LSA     +L ++  +NF SL  L +  N     L
Sbjct: 304 KKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
            K   +   SL  L  L  L LS  +           S+  + H+DLS    T      L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217
            +L  + YL+L+S    + + +   S L  LS  + ++L  
Sbjct: 521 SHLKGI-YLNLAS----NHISIILPSLLPILSQQRTINLRQ 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 29/179 (16%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEK------------------AQLPVFLGSMGSLRH 160
            I  I+ ++  L  L  +  +N+ F                        +   ++  L  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 161 IDLSRAEFTGMIPYQLGNLSNLQYLDLS----SQIPLSFLYLENL-SWLSGLSLLKHLDL 215
           ++L        +P  L +L  LQ L+++                L         ++   +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 216 TGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDN 273
              +L        +   +  L +L       HN +  L        L  L L YN+ + 
Sbjct: 556 GYNNLEEFPASASLQK-MVKLGLLDCV----HNKVRHLEAFGTNVKLTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLG----SMGSLRHIDLSRAEFTGMIPYQLGNLSN 181
           +   +  +  ++ S N        +          +   + LS  E            S 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 182 LQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
           +  + LS    + IP + L  ++ +      LL  +DL    L++ SD F  T  LP L 
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGN-YKNTYLLTTIDLRFNKLTSLSDDFRATT-LPYLS 756

Query: 238 VLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEF 271
            + +S    +N     P    N S L    + +   
Sbjct: 757 NMDVS----YNCFSSFPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEK------AQLPVFLGSMGSLRHIDLSRAEFTGM 171
           ++             +  + LSNN                  +   L  IDL   + T +
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 172 IP-YQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW 226
              ++   L  L  +D+S    S  P   L   N S L    +    D  G  +      
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            + T   PSL  L++      N + ++       LY LD++ N
Sbjct: 801 GITT--CPSLIQLQIG----SNDIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 15/159 (9%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
              +   + +  +   L  ++L  N            ++  L ++D+S   F+   P Q 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENL--SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234
            N S L+   +  Q       +     + ++    L  L +   D+       +   + P
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEKLTP 827

Query: 235 SLQVLKLSACSLHNSLPELPI---ANFSSLYTLDLSYNE 270
            L +L ++     N    + +     +       L Y++
Sbjct: 828 QLYILDIA----DNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168
           L+D  +   ++      S + LK      L+N       +   +  +  L+ I  + + F
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPF 460

Query: 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWL---------------SGLSLLKHL 213
           T          +N  Y        LS+  L++L+ +                 L  L+ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 214 DLTGVDLSTASDWFLVTNMLP-------SLQVLKLSACSLHNSLPELPIANFSSLYTLDL 266
           ++      +A+        L         +Q+  +   +L        +     L  LD 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 267 SYNEF 271
            +N+ 
Sbjct: 581 VHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 8e-13
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 18/156 (11%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
            + SL  +  L  L+  +N      L  F G+   L  + L   +   +          +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRH--LEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 183 QYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW---FLVTNMLPS 235
           + L  S      IP  F           + ++  +D +   + +        +      +
Sbjct: 622 EGLGFSHNKLKYIPNIF-------NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
              + LS   +     EL  A  S + T+ LS N  
Sbjct: 675 ASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 15/163 (9%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIP----- 173
           I +I          +  L  S+N  +         S+  +  +D S  +           
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 174 YQLGNLSNLQYLDLS-----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL 228
                  N   + LS           F     +S +     L +  +T +  ++      
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII----LSNNLMTSIPENSLKPKDG 722

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                  L  + L    L +   +        L  +D+SYN F
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 22/147 (14%)

Query: 147 QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-------------QIPL 193
           Q  V L + G +  + L+     G +P  +G L+ L+ L   +             ++  
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 194 SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN----MLPSLQVLKLSACSL--- 246
                           +       ++LS      +  N     +     + L    +   
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 247 HNSLPELP--IANFSSLYTLDLSYNEF 271
            N +  +   I   + L  +  + + F
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 26/236 (11%), Positives = 54/236 (22%), Gaps = 43/236 (18%)

Query: 56  RFKQDLKDPANRLALWS-DGNCCTWAGVVCN--DSTGHVLELRLGNPFLHDDEPFWLEDY 112
           R+     +       W+ +     W        D+ G V  L L                
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG-------------- 332

Query: 113 KDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI 172
                   G++  ++  L  L  L    ++   +        +      +          
Sbjct: 333 ----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 173 PYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTASDWFLVTN 231
              L     L   DL          ++ +   S +SL    +      ++  S       
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI---Q 445

Query: 232 MLPSLQVLKLSACSLHNSLPELP------------------IANFSSLYTLDLSYN 269
            L  LQ++  +          +                    +N   L  ++L   
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 23/137 (16%)

Query: 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA------EFTGMIPYQLGNLSNL 182
            L +L  +++S N F     P    +   L+   +               P  +    +L
Sbjct: 751 TLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 183 QYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
             L +      ++                  L  LD+      +     +   +   + V
Sbjct: 809 IQLQIGSNDIRKVDEKL-----------TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 239 LKLSACSLHNSLPELPI 255
           L             L I
Sbjct: 858 LLYDKTQDIRGCDALGI 874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 1e-15
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
              ++ + + L+ L +L+  ++  ++        S+  L ++D+S              L
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQV 238
           ++L  L ++     SF      +  +  + L  LDL+   L   +   F   + L  LQ+
Sbjct: 448 TSLNTLKMAGN---SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF---DTLHRLQL 501

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           L +S  +L   L         SL TLD S+N  
Sbjct: 502 LNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 121 GKINPSLLDLKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           G I+   + L  L YL+LS N    +    +      SLRH+DLS       +      L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
             LQ+LD       +   +   S    L  L +LD++  +     D   +   L SL  L
Sbjct: 399 EELQHLDFQH---STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--LTSLNTL 453

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           K++  S  ++      AN ++L  LDLS  + +
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 29/176 (16%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
                       L ++  + L+  + +  +           + + + R +          
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQSLSIIRCQLKQFPT---L 325

Query: 178 NLSNLQYLDLSS---QIPLSFLYLENLSWLS-----------------GLSLLKHLDLTG 217
           +L  L+ L L+     I    + L +LS+L                  G + L+HLDL+ 
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
                 S  F+    L  LQ L     +L          +   L  LD+SY     
Sbjct: 386 NGAIIMSANFM---GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 12/160 (7%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I  I         L  L L  N      +   L ++  L    L   EF      ++   
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 180 SNLQYLDLSSQIPLSFLYLENLS----WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 235
           S ++ L   +       Y  + S        L+ +  + L GV +    D          
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP----KHFK 308

Query: 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            Q L +        L + P  +   L +L L+ N+   + 
Sbjct: 309 WQSLSII----RCQLKQFPTLDLPFLKSLTLTMNKGSISF 344

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 30/174 (17%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
            + S  +   L +L+LS    E  +   +   +  L ++ L+        P     L++L
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 183 QYLDLS-----SQIPLSFLYLENLSWL----------------SGLSLLKHLDLTGVDLS 221
           + L        S        L  L  L                S L+ L H+DL+   + 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 222 TASDWFL--VTNMLPSLQVLKLSACSLHNSLPELPIANFS--SLYTLDLSYNEF 271
           T +   L  +         L +S     N +  +    F    L+ L L  N  
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMS----LNPIDFIQDQAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 121 GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS 180
           G +NP +  + ++   +  +     +++P  + S  S ++IDLS      +  Y   N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKL--SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 181 NLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVL 239
            LQ+LDLS         +E+ +   GL  L +L LTG  + + +   F   + L SL+ L
Sbjct: 57  ELQWLDLSRC---EIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSF---SGLTSLENL 109

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                 L  SL   PI    +L  L++++N
Sbjct: 110 VAVETKL-ASLESFPIGQLITLKKLNVAHN 138

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
                 +   L L  L  L+++ N+F+   L     +  +L  +DLS+ +   +      
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 178 NLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 233
            L  LQ L++S      +  S          + L  L  LD +   + T+       +  
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSH--------YNQLYSLSTLDCSFNRIETSKGILQ--HFP 544

Query: 234 PSLQVLKLSACSLH 247
            SL    L+  S+ 
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 9/156 (5%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
            +  +  L  L  L +++N     +LP +  ++ +L H+DLS      +    L  L   
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 183 QYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242
             ++LS  + L+ +         G+  L  L L G   S+      + N L  L V +L 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQN-LAGLHVHRLI 237

Query: 243 ACSL--HNSLPELPIANFSSLY-----TLDLSYNEF 271
                   +L     +    L         L+Y   
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 6/160 (3%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMG-----SLRHIDLSRAEFTGMIP 173
           + G   P LL+        L+  N   A    +L  +       L+ + +++A       
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 174 YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNM 232
            Q+     L  LDLS    L    L +         L+ L L    + T S     +   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
              LQ L LS  SL ++         S L +L+LS+    
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 33/154 (21%), Positives = 47/154 (30%), Gaps = 19/154 (12%)

Query: 125 PSLLDLKHLVYLELSNNNF---EKAQLPVFLGSMGSLRHIDLSRAEFT---GMIPYQLGN 178
             +     L  L+LS+N           +      +L+ + L  A      G+       
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
              LQ LDLS     S             S L  L+L+   L       +   +   L V
Sbjct: 227 RVQLQGLDLSHN---SLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSV 278

Query: 239 LKLSACSLHNSLPELP-IANFSSLYTLDLSYNEF 271
           L LS    +N L   P       +  L L  N F
Sbjct: 279 LDLS----YNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
               G  +        L  L+LS+N+   A           L  ++LS      +     
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--- 270

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217
           G  + L  LDLS         L+       L  + +L L G
Sbjct: 271 GLPAKLSVLDLSY------NRLDRNPSPDELPQVGNLSLKG 305

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 124 NPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ 183
               ++   +  L +         L      +  ++ I +  ++   +      +L +L+
Sbjct: 279 ELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 184 YLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243
           +LDLS    +   YL+N +       L+ L L+   L +      +   L +L  L +S 
Sbjct: 338 FLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 244 CSL-------------------HNSLPELPIANFSSLYTLDLSYNEFDN 273
            +                       +  +      +L  LD+S N  D+
Sbjct: 397 NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 7e-12
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI 191
            +  L+LS N            +  +L+ + L  +    +      +L +L++LDLS   
Sbjct: 27  AMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-- 83

Query: 192 PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 251
             + L   + SW   LS LK+L+L G    T     L  N L +LQ L++      + + 
Sbjct: 84  --NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIR 140

Query: 252 ELPIANFSSLYTLDLSYNEF 271
            +  A  +SL  L++     
Sbjct: 141 RIDFAGLTSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            L    +L  L L ++     +   F   +GSL H+DLS    + +     G LS+L+YL
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
           +L       +  L   S    L+ L+ L +  V+  +          L SL  L++ A S
Sbjct: 104 NLMGN---PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALS 159

Query: 246 LHNSLPELPIANFSSLYTLDLSYNEF 271
           L  +     + +   ++ L L  +E 
Sbjct: 160 LR-NYQSQSLKSIRDIHHLTLHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LG 177
           +  ++ S    L  L YL L  N ++   +     ++ +L+ + +   E    I      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
            L++L  L++ +   LS    ++   L  +  + HL L   + +   + F   ++L S++
Sbjct: 146 GLTSLNELEIKA---LSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFA--DILSSVR 199

Query: 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            L+L   +L       P+        +     
Sbjct: 200 YLELRDTNL-ARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 12/161 (7%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
               L  L  LE+   +    Q      S+  + H+ L  +E   ++      LS+++YL
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 186 DLS-------SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP---- 234
           +L           PL    + +             D +  +L     + L  + +     
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
           +L  L     S  + + EL      ++  L +        L
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 19/166 (11%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
           +     +L +L  L + N         +    + SL  +++            L ++ ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 183 QYLDLS-----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM-LPSL 236
            +L L        + +    L ++ +L     L+  +L     S      + + M   + 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLE----LRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 237 QVLKLSACSLHN---------SLPELPIANFSSLYTLDLSYNEFDN 273
           +   L+  S +           L E+   + +     D + +E D 
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 41/153 (26%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
              +  S    + + +L LS+                              ++       
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIR--------------------------VVK--TCIP 430

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
             L+ LD+S+        L++ S    L  L+ L ++   L T  D  L     P L V+
Sbjct: 431 QTLEVLDVSNN------NLDSFS--LFLPRLQELYISRNKLKTLPDASL----FPVLLVM 478

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           K+S   L  S+P+      +SL  + L  N +D
Sbjct: 479 KISRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 24/161 (14%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
             L  +  V  + S N   K  L  ++  +  +   D +        P +   +S L  +
Sbjct: 226 KKLAFRGSVLTDESFNELLK--LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 186 DLSSQIPLSFLYLENL-------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           +  +   +  L++          +  S L  +K + +    +      F     L SL+ 
Sbjct: 284 ETVT---IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS--QHLKSLEF 338

Query: 239 LKLSACSLHNSLPELPIANFS------SLYTLDLSYNEFDN 273
           L LS     N + E  + N +      SL TL LS N   +
Sbjct: 339 LDLS----ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKH 212
           +    D     FT  IP  L   + ++ LDLS    + I            L   + L+ 
Sbjct: 6   ASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHG--------DLRACANLQV 54

Query: 213 LDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           L L    ++T   D F     L SL+ L LS   L  SL        SSL  L+L  N +
Sbjct: 55  LILKSSRINTIEGDAF---YSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY 110

Query: 272 D 272
            
Sbjct: 111 Q 111

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
                L HL ++ +      +  LP  +     L  + L+R      +P  + +L+ L+ 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154

Query: 185 LDLSS-----QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           L + +     ++P      +      GL  L+ L L    + +          L +L+ L
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNLKSL 211

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           K+    L  +L    I +   L  LDL   
Sbjct: 212 KIRNSPLS-ALGP-AIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
                 V LEL +    +   P     +  L+H+ +  A     +P  +   + L+ L L
Sbjct: 78  ATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 188 S----SQIPLSFLYLENLS--WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241
           +      +P S   L  L    +     L  L         + +       L +LQ L+L
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE----HQGLVNLQSLRL 190

Query: 242 SACSLHNSLPELP--IANFSSLYTLDLSYN 269
                   +  LP  IAN  +L +L +  +
Sbjct: 191 E----WTGIRSLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN 181
             +     L +L  L L         LP  + ++ +L+ + +  +  +  +   + +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 182 LQYLDLSSQIPLSFLYLENL-SWLSGLSLLKHLDLTGV-DLSTASDWFLVTNMLPSLQVL 239
           L+ LDL          L N      G + LK L L    +L T        + L  L+ L
Sbjct: 231 LEELDLR-----GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---HRLTQLEKL 282

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            L  C   + LP L IA   +   + +  +      
Sbjct: 283 DLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            S+ +L++L  L++ N+      L   +  +  L  +DL         P   G  + L+ 
Sbjct: 200 ASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG-VDLSTASDWFLVTNMLPSLQVLKLSA 243
           L L     L  L L+    +  L+ L+ LDL G V+LS           LP+  ++ +  
Sbjct: 258 LILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPSLI---AQLPANCIILVPP 310

Query: 244 CSLHNSLPELPIA 256
                     P+A
Sbjct: 311 HLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 11/115 (9%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT 216
              ++    +         L         D +           +    +  +  +    T
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRN--------RWHSAWRQANSNNPQIETRT 64

Query: 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           G  L   +D        P    L+L +  L    P+      S L  + +     
Sbjct: 65  GRALKATADLLEDATQ-PGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGL 116

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
              L  L+L +NN         L     L  +DLS  E   ++ +    +  L+ L +S 
Sbjct: 231 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 189 ---SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
                + L    +  L  L     L H  L  V+ +              L+ L L    
Sbjct: 288 NRLVALNLYGQPIPTLKVLD----LSHNHLLHVERNQPQ--------FDRLENLYLD--- 332

Query: 246 LHNSLPELPIANFSSLYTLDLSYNEFD 272
            HNS+  L ++   +L  L LS+N++D
Sbjct: 333 -HNSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 31/170 (18%)

Query: 124 NPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
               + L +   +   N+   K  LP   L S   +  ++L+  +   +  Y       +
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101

Query: 183 QYLDLSS-QI----PLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLST 222
           Q L +    I    P  F  +  L+ L                    L  L ++  +L  
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 223 -ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
              D F       SLQ L+LS     N L  + ++   SL+  ++SYN  
Sbjct: 162 IEDDTF---QATTSLQNLQLS----SNRLTHVDLSLIPSLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 29/161 (18%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +      +  L +  N        VF   +  L  + L R + + +      N   L  L
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

Query: 186 DLSS-QI----PLSFLYLENLSWL------------SGLSLLKHLDLTGVDLSTASDWFL 228
            +S+  +      +F    +L  L            S +  L H +++   LST +    
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI--- 209

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                 +++ L  S    HNS+  +       L  L L +N
Sbjct: 210 ----PIAVEELDAS----HNSINVVRGPVNVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  +N     +  L  L+LS+N+     +         L ++ L       +   +L   
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTL---KLSTH 344

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDL 215
             L+ L LS      +      +    ++     D 
Sbjct: 345 HTLKNLTLSH---NDWDCNSLRALFRNVARPAVDDA 377

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 7e-13
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 20/156 (12%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
            +       ++++++ ++A   +   S  +++ +DLS    + +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 188 S----SQIP-------LSFLYLEN--LSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234
           S     +         L  L L N  +  L     ++ L     ++S      +  +   
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR-----VSCSRGQ 120

Query: 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
             + + L+   +   L +L     S +  LDL  NE
Sbjct: 121 GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNE 155

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 33/168 (19%), Positives = 53/168 (31%), Gaps = 32/168 (19%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            LL    +  L  +NNN  +             ++I L+  + T +     G  S +QYL
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 186 DLSS------QIPLSFLYLENLSWLS-------------GLSLLKHLDLTGVDLSTASDW 226
           DL                 + L  L+               + LK LDL+   L+     
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEFD 272
           F        +  + L     +N L  +   +    +L   DL  N F 
Sbjct: 210 F---QSAAGVTWISLR----NNKLVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 25/169 (14%), Positives = 48/169 (28%), Gaps = 28/169 (16%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
                  + YL+L  N  +         S  +L H++L        +       + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTL 196

Query: 186 DLS----SQIPLSFLYLENLSWLS--------------GLSLLKHLDLTGVDLSTAS--D 225
           DLS    + +   F     ++W+S                  L+H DL G      +  D
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 226 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274
           +F     + ++      A      L        +            ++ 
Sbjct: 257 FFSKNQRVQTV------AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
              +    L  L+LS+N      +     S   +  I L   +   +I   L    NL++
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 185 LDLSS------QIPLSFLYLENLSWLSGLSL 209
            DL         +   F   + +  ++  ++
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 14/166 (8%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I KI       L +L  L LS N   +     F G +  + +IDL +     +       
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 179 LSNLQYLDLS----------SQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTASDWF 227
           L  LQ LDL             IP  FL    L  L  ++L    + L+   L      +
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 228 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
            +   +P LQ+L L+     +   +   +   SL  L L  N    
Sbjct: 421 FLLR-VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI-PYQLGNLSNLQYLDL 187
            L     L LS N         F   +  L+ ++L        I      NL NL+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 247
            S   + FL   +     GL  L  L L    LS A         L +L  L LS   + 
Sbjct: 81  GSS-KIYFL---HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 248 NSLPELPIANFSSLYTLDLSYNEF 271
           +          +SL ++D S N+ 
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS-----RAEFTGMIPYQL 176
            I   LL + HL  L L+ N F             SL  + L       A  T +     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSW--LSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234
             LS+LQ L L+        YL +L     S L+ L+ L L    L+  S   L      
Sbjct: 477 EGLSHLQVLYLNH------NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL----PA 526

Query: 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274
           +L++L +S     N L       F SL  LD+++N+F   
Sbjct: 527 NLEILDIS----RNQLLAPNPDVFVSLSVLDITHNKFICE 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  +  S    L+ L  LEL +             ++ +LR +DL  ++   + P     
Sbjct: 36  IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           L +L  L L     LS   L++  +   L  L  LDL+   + +          L SL+ 
Sbjct: 96  LFHLFELRLYF-CGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGK-LNSLKS 152

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSY 268
           +  S     N +  +       L    LS+
Sbjct: 153 IDFS----SNQIFLVCEHELEPLQGKTLSF 178

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS--NLQ 183
              +LK L  L+LS N      L    G + SL+ ID S  +   +  ++L  L    L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 184 YLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLS----TASDWFLVTNMLPSLQVL 239
           +  L++    S     ++ W   ++  +++ L  +D+S    T       +N +   Q  
Sbjct: 178 FFSLAA---NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 240 KLSACSL-------HNSLPELPIANF-----SSLYTLDLSYNEFDN 273
            L             +++ +     F     SS+  LDLS+    +
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 16/163 (9%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLS 180
            ++PS   L  L  ++ S+N                +L    L+       +    G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 181 N------LQYLDLSS--------QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW 226
           N      L+ LD+S             + +       L     +        ++      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                   S++ L LS   +  SL          L  L+L+YN
Sbjct: 259 TFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSW--LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 235
            L+  + L LS      F Y+  ++      L  L+ L+L         D     N LP+
Sbjct: 22  VLNTTERLLLS------FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPN 74

Query: 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274
           L++L L +  ++  L          L+ L L +    + 
Sbjct: 75  LRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDA 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 9e-13
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 27/170 (15%)

Query: 124 NPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ 183
               + L +   +   N+   K      L S   +  ++L+  +   +  Y       +Q
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 184 YLDLSS-QI----PLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLSTA 223
            L +    I    P  F  +  L+ L                    L  L ++  +L   
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
            D         SLQ L+LS     N L  + ++   SL+  ++SYN    
Sbjct: 157 EDDTFQA--TTSLQNLQLS----SNRLTHVDLSLIPSLFHANVSYNLLST 200

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
              L  L+L +NN         L     L  +DLS  E   ++ +    +  L+ L +S 
Sbjct: 225 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 189 ---SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
                + L    +  L  L     L H  L  V+ +              L+ L L    
Sbjct: 282 NRLVALNLYGQPIPTLKVLD----LSHNHLLHVERNQPQ--------FDRLENLYLD--- 326

Query: 246 LHNSLPELPIANFSSLYTLDLSYNEFD 272
            HNS+  L ++   +L  L LS+N++D
Sbjct: 327 -HNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 29/163 (17%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +      +  L +  N        VF   +  L  + L R + + +      N   L  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 186 DLSS-QI----PLSFLYLENLSWL------------SGLSLLKHLDLTGVDLSTASDWFL 228
            +S+  +      +F    +L  L            S +  L H +++   LST +    
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI--- 203

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                 +++ L  S    HNS+  +       L  L L +N  
Sbjct: 204 ----PIAVEELDAS----HNSINVVRGPVNVELTILKLQHNNL 238

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
            +       ++++++ ++A   +   S  +++ +DLS    + +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 247
           SS        L     L  LS L+ LDL    +             PS++ L  +    +
Sbjct: 66  SSN------VLYETLDLESLSTLRTLDLNNNYVQELLV-------GPSIETLHAA----N 108

Query: 248 NSLPELPIANFSSLYTLDLSYN 269
           N++  +  +       + L+ N
Sbjct: 109 NNISRVSCSRGQGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            LL    +  L  +NNN  +             ++I L+  + T +     G  S +QYL
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 186 DLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           DL   +I      +      +    L+HL+L    +       +       L+ L LS  
Sbjct: 150 DLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLS-- 199

Query: 245 SLHNSLPELP--IANFSSLYTLDLSYN 269
              N L  +     + + +  + L  N
Sbjct: 200 --SNKLAFMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 28/169 (16%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
                  + YL+L  N  +         S  +L H++L        +       + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTL 196

Query: 186 DLS----SQIPLSFLYLENLSWL--------------SGLSLLKHLDLTGVDLSTAS--D 225
           DLS    + +   F     ++W+                   L+H DL G      +  D
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 226 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274
           +F     + ++             L        +            ++ 
Sbjct: 257 FFSKNQRVQTVA------KQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           + +   SL     ++  L+LS N   +      L     L  ++LS       +   L +
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LES 78

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           LS L+ LDL++           +  L     ++ L     ++S      +  +     + 
Sbjct: 79  LSTLRTLDLNNN---------YVQELLVGPSIETLHAANNNISR-----VSCSRGQGKKN 124

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + L+   +   L +L     S +  LDL  NE 
Sbjct: 125 IYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 31/163 (19%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            L     L  L LS+N     +      S+ +LR +DL+          +L    +++ L
Sbjct: 53  DLAPFTKLELLNLSSNVLY--ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104

Query: 186 DLS----SQIP------LSFLYLEN--LSWL-----SGLSLLKHLDLTGVDLSTASDWFL 228
             +    S++          +YL N  ++ L        S +++LDL   ++ T +   L
Sbjct: 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNE 270
             +   +L+ L L     +N + ++     F+ L TLDLS N+
Sbjct: 165 AAS-SDTLEHLNLQ----YNFIYDVKGQVVFAKLKTLDLSSNK 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 15/156 (9%), Positives = 35/156 (22%), Gaps = 15/156 (9%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  I  +L   ++L + +L  N F    L  F      ++ +         +        
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQNEEEC 283

Query: 180 SNLQYLDLSSQI--PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
           +        +     L   + + L  L        L   G +                 +
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALK-RKEHALLSGQGSETERLECERE---NQARQR 339

Query: 238 VLKLSACSLHNSLPELPIANF---SSLYTLDLSYNE 270
            +             +         +  TL+     
Sbjct: 340 EIDAL----KEQYRTVIDQVTLRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 19/99 (19%)

Query: 177 GNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 232
            N +  +   ++     Q   S               +K LDL+G  LS  S   L    
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLR--------QSAWNVKELDLSGNPLSQISAADLAP-- 56

Query: 233 LPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNE 270
              L++L LS     N L E   + + S+L TLDL+ N 
Sbjct: 57  FTKLELLNLS----SNVLYETLDLESLSTLRTLDLNNNY 91

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  ++ + L L+ L +L+  ++N ++        S+ +L ++D+S              L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 180 SNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           S+L+ L ++      +FL        + L  L  LDL+   L   S      N L SLQV
Sbjct: 445 SSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQV 498

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
           L +++  L  S+P+      +SL  + L  N +D
Sbjct: 499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT--GMIPYQLGNLSNLQYL 185
           L LK L  L  ++N          +  + SL  +DLSR   +  G         ++L+YL
Sbjct: 322 LKLKSLKRLTFTSNKGGN--AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 186 DLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241
           DLS      +  +FL LE L         +HLD    +L   S++ +  + L +L  L +
Sbjct: 379 DLSFNGVITMSSNFLGLEQL---------EHLDFQHSNLKQMSEFSVFLS-LRNLIYLDI 428

Query: 242 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
           S                SSL  L ++ N F    
Sbjct: 429 SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENF 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 124 NPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ 183
           + S      L  L+LS    +  +   +   +  L  + L+      +       LS+LQ
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 184 YLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243
            L        + L       +  L  LK L++    + +       +N L +L+ L LS 
Sbjct: 104 KLVAVE----TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLS- 157

Query: 244 CSLHNSLPELPIANFSSL-------YTLDLSYN 269
               N +  +   +   L        +LDLS N
Sbjct: 158 ---SNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 15/162 (9%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I       L HL  L L+ N  +   L  F G + SL+ +         +  + +G+
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGH 122

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           L  L+ L+++    +    L      S L+ L+HLDL+   + +     +    L  L  
Sbjct: 123 LKTLKELNVAHN-LIQSFKLPEY--FSNLTNLEHLDLSSNKIQS-----IYCTDLRVLHQ 174

Query: 239 LKLSACSLH---NSLPELPIANFS--SLYTLDLSYNEFDNTL 275
           + L   SL    N +  +    F    L+ L L  N     +
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            +  LK L  L +++N  +  +LP +  ++ +L H+DLS  +   +    L  L  +  L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 186 DLSSQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           +LS  + LS   +  +   +   + L  L L     S       +   L  L+V +L   
Sbjct: 179 NLS--LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG-LAGLEVHRLVLG 235

Query: 245 SL--HNSLPELPIANFSSLYTLDLSYN 269
                 +L +   +    L  L +   
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT 216
           S +++DLS      +  Y   +   LQ LDLS         +E+ +    LS L  L LT
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---EIQTIEDGA-YQSLSHLSTLILT 84

Query: 217 GVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           G  + + A   F   + L SLQ L     +L  SL   PI +  +L  L++++N  
Sbjct: 85  GNPIQSLALGAF---SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
                     +LEL N  F   Q P     + SL+ +  +  +          +L +L++
Sbjct: 298 KDFSYNFGWQHLELVNCKFG--QFP--TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEF 351

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           LDLS    LSF    + S   G + LK+LDL+   + T S  FL    L  L+ L     
Sbjct: 352 LDLSR-NGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHS 406

Query: 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273
           +L          +  +L  LD+S+     
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 13/159 (8%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG---MIPYQL 176
           +  I P       L  L L NN      +   +  +  L    L   EF     +  +  
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 177 GNLSNLQYLDLS--SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234
             L  L  L +       L +   + +   + L+ +    L  V +    D+        
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNF 304

Query: 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
             Q L+L    ++    + P     SL  L  + N+  N
Sbjct: 305 GWQHLEL----VNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 12/158 (7%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQLG 177
           +  +   + D L  L  L LS+N                SL+++DLS       +     
Sbjct: 40  LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98

Query: 178 NLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPS 235
            L  L++LD     +      +   S    L  L +LD++        +  F   N L S
Sbjct: 99  GLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---NGLSS 151

Query: 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
           L+VLK++  S   +          +L  LDLS  + + 
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 31/178 (17%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  ++ + L L+ L +L+  ++N ++        S+ +L ++D+S              L
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 180 SNLQYLDLS------SQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGV 218
           S+L+ L ++      + +P  F  L NL++L               + LS L+ L+++  
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 219 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF----SSLYTLDLSYNEFD 272
           +  +   +      L SLQVL  S     N +            SSL  L+L+ N+F 
Sbjct: 210 NFFSLDTFPY--KCLNSLQVLDYS----LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT 216
           S   ++L   +   +       L+ L  L LSS   LSF    + S   G + LK+LDL+
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLS 86

Query: 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
              + T S  FL    L  L+ L     +L          +  +L  LD+S+ 
Sbjct: 87  FNGVITMSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 118 KLIGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
                  P +  +L++L +L+LS    E+     F   + SL+ +++S   F  +  +  
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPY 219

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217
             L++LQ LD S    +     + L      S L  L+LT 
Sbjct: 220 KCLNSLQVLDYSL-NHIMTSKKQELQHF--PSSLAFLNLTQ 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 27/172 (15%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +  I+      L  L  L L   N            +  L  + L       +  Y    
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSFKR 198

Query: 179 LSNLQYLDLS-----SQIPLSFLYLENLSWLS---------------GLSLLKHLDLTGV 218
           L  L+ L++S       +  + LY  NL+ LS                L  L+ L+L+  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 219 DLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            +ST         + L  LQ ++L    L   +        + L  L++S N
Sbjct: 259 PISTIEGSML---HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 120 IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +  + P +  +L +L  L L +N  +   L VF G + +L  +D+S  +   ++ Y   +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQD 126

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQ 237
           L NL+ L++     L ++   +    SGL+ L+ L L   +L++  ++     + L  L 
Sbjct: 127 LYNLKSLEVGDN-DLVYI---SHRAFSGLNSLEQLTLEKCNLTSIPTEAL---SHLHGLI 179

Query: 238 VLKLSACSLHNSLPELPIANFSSLY---TLDLSYNEF 271
           VL+L     H ++  +   +F  LY    L++S+  +
Sbjct: 180 VLRLR----HLNINAIRDYSFKRLYRLKVLEISHWPY 212

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  +   +  DL +L  LE+ +N+        F G + SL  + L +   T +    L +
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSH 174

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQ 237
           L  L  L L   + ++ +          L  LK L+++    L T +   L      +L 
Sbjct: 175 LHGLIVLRLRH-LNINAI---RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---GLNLT 227

Query: 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
            L ++ C+L  ++P L + +   L  L+LSYN    
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 27/174 (15%)

Query: 120 IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +  I   +L  L  L+ L L + N    +   F   +  L+ +++S   +   +      
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLY 222

Query: 179 LSNLQYLDLS----SQIP-LSFLYLENLSWL---------------SGLSLLKHLDLTGV 218
             NL  L ++    + +P L+  +L  L +L                 L  L+ + L G 
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 219 DLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
            L+      F     L  L+VL +S   L  +L E    +  +L TL L  N  
Sbjct: 283 QLAVVEPYAF---RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 26/161 (16%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS--- 188
               L+L  N  +      F      L  ++L+    + + P    NL NL+ L L    
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 189 -SQIP-LSFLYLENLSWL---------------SGLSLLKHLDLTGVDLST-ASDWFLVT 230
              IP   F  L NL+ L                 L  LK L++   DL   +   F   
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--- 148

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + L SL+ L L  C+L  S+P   +++   L  L L +   
Sbjct: 149 SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
             +  + P+ L   +L  L +++ N            +  LR ++LS    + +    L 
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLH 269

Query: 178 NLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPS 235
            L  LQ + L   Q+      +E  +   GL+ L+ L+++G  L+T     F   + + +
Sbjct: 270 ELLRLQEIQLVGGQL----AVVEPYA-FRGLNYLRVLNVSGNQLTTLEESVF---HSVGN 321

Query: 236 LQVLKLSACSLH 247
           L+ L L +  L 
Sbjct: 322 LETLILDSNPLA 333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 26/171 (15%)

Query: 120 IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I +I   +   L  L  LEL +N         F   +  LR + L       +  Y    
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNR 169

Query: 179 LSNLQYLDLS-----SQIP---------LSFLYLEN-----LSWLSGLSLLKHLDLTGVD 219
           + +L  LDL        I          L +L L       +  L+ L  L+ L+++G  
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

Query: 220 LST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                   F   + L SL+ L +    +   +        +SL  L+L++N
Sbjct: 230 FPEIRPGSF---HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 43/165 (26%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIPYQLGNLSNLQY 184
           +   L  L  L L NN  E      F   + SL  +DL    +   +       L NL+Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 185 LDLS----SQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLST-AS 224
           L+L       +P +   L  L  L                GLS LK L +    +S    
Sbjct: 201 LNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 225 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           + F   + L SL  L L+  +L  SLP         L  L L +N
Sbjct: 260 NAF---DGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 20/160 (12%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I       L HL  L+L  N+  + ++  F G + SL  ++L     T +       
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEY 145

Query: 179 LSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234
           LS L+ L L       IP            + +  L  LDL  +              L 
Sbjct: 146 LSKLRELWLRNNPIESIPSY--------AFNRVPSLMRLDLGELKKLEYISEGAFEG-LF 196

Query: 235 SLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDN 273
           +L+ L L       ++ ++P +     L  L++S N F  
Sbjct: 197 NLKYLNLG----MCNIKDMPNLTPLVGLEELEMSGNHFPE 232

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-QI----PLSFLYLENLSWL------- 204
           + R+++L       +      +L +L+ L L    I      +F  L +L+ L       
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 205 --------SGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI 255
                     LS L+ L L    + +  S  F   N +PSL  L L        L  +  
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAF---NRVPSLMRLDLGEL---KKLEYISE 189

Query: 256 ANF---SSLYTLDLSYN 269
             F    +L  L+L   
Sbjct: 190 GAFEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +   L +L YL L   N     +P     +  L  +++S   F  + P     LS+L+ L
Sbjct: 191 AFEGLFNLKYLNLGMCNI--KDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 186 DLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
            + + Q+      +E  +   GL+ L  L+L   +LS+          L  L  L L   
Sbjct: 248 WVMNSQV----SLIERNA-FDGLASLVELNLAHNNLSSLPHDLF--TPLRYLVELHLHHN 300

Query: 245 SLH 247
             +
Sbjct: 301 PWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
           P+L  L  L  LE+S N+F + +   F G + SL+ + +  ++ + +       L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 185 LDLSSQIPLSFLYLENLSW--LSGLSLLKHLDLTG 217
           L+L+         L +L     + L  L  L L  
Sbjct: 271 LNLAH------NNLSSLPHDLFTPLRYLVELHLHH 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 120 IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I   +   L +L  LEL +N         F+  +  L+ + L       +  Y    
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNR 158

Query: 179 LSNLQYLDLS-----SQIPL-SFLYLENLSWLS-------------GLSLLKHLDLTGVD 219
           + +L+ LDL      S I   +F  L NL +L+              L  L  LDL+G  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

Query: 220 LST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           LS      F     L  LQ L +    +   +      N  SL  ++L++N
Sbjct: 219 LSAIRPGSF---QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 28/173 (16%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I  +    L+HL  L+LS N+    ++  F G + +L  ++L     T +       
Sbjct: 76  IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVY 134

Query: 179 LSNLQYLDLS----SQIPL-SFLYLENLSWL----------------SGLSLLKHLDLTG 217
           LS L+ L L       IP  +F  + +L  L                 GLS L++L+L  
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
            +L    +       L  L  L LS   L  ++          L  L +  ++
Sbjct: 195 CNLREIPNL----TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 40/171 (23%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIPYQLG 177
           +  I       L  L  L L NN  E      F   + SLR +DL      + +      
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGELKRLSYISEGAFE 182

Query: 178 NLSNLQYLDLS----SQIPLSFLYLENLSWL---------------SGLSLLKHLDLTGV 218
            LSNL+YL+L+     +IP +   L  L  L                GL  L+ L +   
Sbjct: 183 GLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 219 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            +            L SL  + L+  +L   LP         L  + L +N
Sbjct: 242 QIQVIERNAFDN--LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS--- 188
           +   L L  N  +  ++  F   +  L  + LSR     +       L+NL  L+L    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 189 -SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSL 246
            + IP              LS LK L L    + +  S  F   N +PSL+ L L     
Sbjct: 124 LTTIPNG--------AFVYLSKLKELWLRNNPIESIPSYAF---NRIPSLRRLDLGEL-- 170

Query: 247 HNSLPELPIANF---SSLYTLDLSYNEFDN 273
              L  +    F   S+L  L+L+      
Sbjct: 171 -KRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 17/126 (13%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +   L +L YL L+  N  +  +P     +  L  +DLS    + + P     L +LQ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE--IPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 186 DLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241
            +       I  +            L  L  ++L   +L+           L  L+ + L
Sbjct: 237 WMIQSQIQVIERNA--------FDNLQSLVEINLAHNNLTLLPHDLF--TPLHHLERIHL 286

Query: 242 SACSLH 247
                +
Sbjct: 287 HHNPWN 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            +  +L+ +  L ++       Q    +  + +L +++L+  + T + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L + +        + ++S L  L+ L+ L L   ++S  S        L  +  L L A 
Sbjct: 93  LYIGTN------KITDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGAN 142

Query: 245 SLHNSLPELPIANFSSLYTLDLSYNE 270
              + L   P++N + L  L ++ ++
Sbjct: 143 HNLSDLS--PLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I +I P   DL   +   L   +       V    + S+  + ++  +   +    +  L
Sbjct: 12  INQIFP-DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG--IEYL 65

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           +NL+YL+L+         + ++S LS L  L +L +    ++  S        L +L+ L
Sbjct: 66  TNLEYLNLNGN------QITDISPLSNLVKLTNLYIGTNKITDISAL----QNLTNLREL 115

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
            L+     +++ ++ P+AN + +Y+L+L  N 
Sbjct: 116 YLN----EDNISDISPLANLTKMYSLNLGANH 143

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L  L  L Y     N          + +M  L  + +   + T + P  L NLS L +
Sbjct: 193 SPLASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L++ +        + +++ +  L+ LK L++    +S  S    + N L  L  L L+  
Sbjct: 248 LEIGTN------QISDINAVKDLTKLKMLNVGSNQISDISV---LNN-LSQLNSLFLNNN 297

Query: 245 SLHNSLPELPIANFSSLYTLDLSYNE 270
            L N   E  I   ++L TL LS N 
Sbjct: 298 QLGNEDME-VIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 19/147 (12%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L +L  L  L +  N          L ++ +LR + L+    + + P  L NL+ +  
Sbjct: 82  SPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L+L +   LS     +LS LS ++ L +L +T   +   +        L  L  L L+  
Sbjct: 137 LNLGANHNLS-----DLSPLSNMTGLNYLTVTESKVKDVTPI----ANLTDLYSLSLN-- 185

Query: 245 SLHNSLPEL-PIANFSSLYTLDLSYNE 270
             +N + ++ P+A+ +SL+      N+
Sbjct: 186 --YNQIEDISPLASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 28/152 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             + ++  L  L++ NN          L ++  L  +++   + + +    + +L+ L+ 
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDINA--VKDLTKLKM 269

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDL-----TGVDLSTASDWFLVTNMLPSLQVL 239
           L++ S        + ++S L+ LS L  L L        D+            L +L  L
Sbjct: 270 LNVGSN------QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG-------LTNLTTL 316

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
            LS     N + ++ P+A+ S + + D +   
Sbjct: 317 FLS----QNHITDIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 17/114 (14%)

Query: 158 LRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217
              +    A    + P    +L+      L          + ++     L  +  L + G
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKA------SVTDVVTQEELESITKLVVAG 53

Query: 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
             +++          L +L+ L L+     N + ++ P++N   L  L +  N+
Sbjct: 54  EKVASIQGI----EYLTNLEYLNLN----GNQITDISPLSNLVKLTNLYIGTNK 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  I P L +LK+L +L L  N  +       L  +  L+ + L     + +    L +L
Sbjct: 77  LTDIKP-LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING--LVHL 130

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
             L+ L L +        + +++ LS L+ L  L L    +S           L  LQ L
Sbjct: 131 PQLESLYLGNN------KITDITVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 180

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDN 273
            LS     N + +L  +A   +L  L+L   E  N
Sbjct: 181 YLS----KNHISDLRALAGLKNLDVLELFSQECLN 211

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 21/151 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I +I P        +   L   +       V    + S+  I  + ++   +    +  L
Sbjct: 11  IKQIFP-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYL 64

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
            N+  L L+         L ++  L+ L  L  L L    +   S   L    L  L+ L
Sbjct: 65  PNVTKLFLNGN------KLTDIKPLTNLKNLGWLFLDENKIKDLS--SL--KDLKKLKSL 114

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
            L     HN + ++  + +   L +L L  N
Sbjct: 115 SLE----HNGISDINGLVHLPQLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 30/163 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            +  +L  +  +  +N++ +  Q    +  + ++  + L+  + T + P  L NL NL +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 185 LDLS----SQIP-------LSFLYLEN-----LSWLSGLSLLKHLDLTGVDLSTASDWFL 228
           L L       +        L  L LE+     ++ L  L  L+ L L    ++  +    
Sbjct: 92  LFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--- 148

Query: 229 VTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
             + L  L  L L      N + ++ P+A  + L  L LS N 
Sbjct: 149 -LSRLTKLDTLSLE----DNQISDIVPLAGLTKLQNLYLSKNH 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I  IN  L+ L  L  L L NN          L  +  L  + L   + + ++P  L  L
Sbjct: 121 ISDING-LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP--LAGL 174

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           + LQ L LS        ++ +L  L+GL  L  L+L   +           + L     +
Sbjct: 175 TKLQNLYLSKN------HISDLRALAGLKNLDVLELFSQECLNKPINHQ--SNLVVPNTV 226

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
           K        SL     I++       ++ ++
Sbjct: 227 KN----TDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211
             +       +L +   T  +      L+++  +  ++        ++++  +  L  + 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS------DIKSVQGIQYLPNVT 68

Query: 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
            L L G  L+           L +L  L L      N + +L  + +   L +L L +N 
Sbjct: 69  KLFLNGNKLTDIKPL----TNLKNLGWLFLD----ENKIKDLSSLKDLKKLKSLSLEHNG 120

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 29/161 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            S  DL  +  L+      +       +  + +L  I+ S  + T + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 185 LDLS----SQIP-------LSFLYLEN-----LSWLSGLSLLKHLDLTGVDLSTASDWFL 228
           + ++    + I        L+ L L N     +  L  L+ L  L+L+   +S  S    
Sbjct: 95  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL-- 152

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             + L SLQ L       +      P+AN ++L  LD+S N
Sbjct: 153 --SGLTSLQQLSFG----NQVTDLKPLANLTTLERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            +L  L +L  L+L+NN          L  +  L  + L   + + + P  L  L+ L  
Sbjct: 237 GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L+L+         LE++S +S L  L +L L   ++S  S      + L  LQ L     
Sbjct: 292 LELNEN------QLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTKLQRLFFY-- 339

Query: 245 SLHNSLPELP-IANFSSLYTLDLSYNEF 271
             +N + ++  +AN +++  L   +N+ 
Sbjct: 340 --NNKVSDVSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 20/150 (13%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L  L  L  L+L  N          L  + +L +++L+  +   + P  + NL NL Y
Sbjct: 259 APLSGLTKLTELKLGANQISN---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L L          + ++S +S L+ L+ L      +S  S        L ++  L     
Sbjct: 314 LTLYFN------NISDISPVSSLTKLQRLFFYNNKVSDVSSL----ANLTNINWLSAG-- 361

Query: 245 SLHNSLPEL-PIANFSSLYTLDLSYNEFDN 273
             HN + +L P+AN + +  L L+   + N
Sbjct: 362 --HNQISDLTPLANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 21/150 (14%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L +L +L  LELS+N          L  + SL+ +     + T + P  L NL+ L+ 
Sbjct: 128 DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN-QVTDLKP--LANLTTLER 181

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           LD+SS        + ++S L+ L+ L+ L  T   +S  +       +L +L  L L+  
Sbjct: 182 LDISSN------KVSDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLN-- 229

Query: 245 SLHNSLPELP-IANFSSLYTLDLSYNEFDN 273
              N L ++  +A+ ++L  LDL+ N+  N
Sbjct: 230 --GNQLKDIGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 21/151 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I +I      L   +   L   N       V    +  +  +   R     +    +  L
Sbjct: 14  INQIFT-DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG--VEYL 67

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           +NL  ++ S+        L +++ L  L+ L  + +    ++  +        L +L  L
Sbjct: 68  NNLTQINFSNN------QLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGL 117

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
            L     +N + ++ P+ N ++L  L+LS N
Sbjct: 118 TLF----NNQITDIDPLKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 17/120 (14%)

Query: 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211
             ++       L +   T  +     +L  +  L          L ++++  +  L+ L 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADR------LGIKSIDGVEYLNNLT 71

Query: 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
            ++ +   L+  +    + N L  L  + ++    +N + ++ P+AN ++L  L L  N+
Sbjct: 72  QINFSNNQLTDITP---LKN-LTKLVDILMN----NNQIADITPLANLTNLTGLTLFNNQ 123

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177
             + +          + +++LSN+  E + L   L     L+++ L     +  I   L 
Sbjct: 80  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG-VDLSTASDWFLVTNMLPSL 236
             SNL  L+LS     S   L+ L   S  S L  L+L+   D +       V ++  ++
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 237 QVLKLSACSLH---NSLPELPIANFSSLYTLDLSY 268
             L LS    +   + L  L +    +L  LDLS 
Sbjct: 198 TQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSD 231

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
           P L +   L  +++ NN+ +K  LP       SL  I     +    +P +L NL  L  
Sbjct: 147 PELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA 199

Query: 185 LDLS----SQIPLSFLYLENLSW----------LSGLSLLKHLDLTGVDLSTASDWFLVT 230
           +        ++P   L LE++            L  L  L  +      L T  D     
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---- 255

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
              PSL+ L +    L   LPELP     SL  LD+S N F  
Sbjct: 256 --PPSLEALNVRDNYL-TDLPELP----QSLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 28/156 (17%)

Query: 128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
              +    LEL+N       LP        L  +  S    T  +P    +L +L   + 
Sbjct: 68  CLDRQAHELELNNLGLS--SLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 188 S----SQIP-------LSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
           +    S +P       +S   LE L  L   S LK +D+    L        + ++ PSL
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSL 175

Query: 237 QVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEF 271
           + +       +N L ELP + N   L  +    N  
Sbjct: 176 EFIAAG----NNQLEELPELQNLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
           INP  +    L      ++N    ++PV   ++ S      + +E+    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 183 QYLDLSSQIPLSFLYLE----NLSWL-SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
               L   +      LE     LS L      L+ L  +   L+   +       L SL 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELP---QSLKSLL 117

Query: 238 VLKLSACSL-------------HNSLPELP-IANFSSLYTLDLSYNEF 271
           V   +  +L             +N L +LP + N S L  +D+  N  
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           + ++      LK L+    +        LP        L ++ +S  +    +P +L N 
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKALS--DLP------PLLEYLGVSNNQLEK-LP-ELQNS 152

Query: 180 SNLQYLDLS----SQIP----------LSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD 225
           S L+ +D+      ++P               LE L  L  L  L  +      L     
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--- 209

Query: 226 WFLVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYN 269
              + ++  SL+ +       +N L ELP + N   L T+    N
Sbjct: 210 ---LPDLPLSLESIVAG----NNILEELPELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 27/151 (17%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
              L  L +SNN     +LP        L  +  S       +P       NL+ L +  
Sbjct: 316 PPSLEELNVSNNKLI--ELP---ALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEY 366

Query: 189 ---SQIPLSFLYLENLSWLSGLSL-------LKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
               + P     +E+L   S L+        LK L +    L          ++  S++ 
Sbjct: 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE------FPDIPESVED 420

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           L++++  +     E        L      ++
Sbjct: 421 LRMNSERV-VDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 35/155 (22%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
            + L +L++S N F    L     +   L +++ S  E   +         +L+ L++S 
Sbjct: 276 PQSLTFLDVSENIFS--GLSELPPN---LYYLNASSNEIRSLC----DLPPSLEELNVSN 326

Query: 189 ---SQIPLSFLYLENLSWLSGLSL---------LKHLDLTGVDLSTASDWFLVTNMLPSL 236
               ++P     LE L   S   L         LK L +    L          ++  S+
Sbjct: 327 NKLIELPALPPRLERL-IASFNHLAEVPELPQNLKQLHVEYNPLRE------FPDIPESV 379

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + L+++  S    +PELP     +L  L +  N  
Sbjct: 380 EDLRMN--SHLAEVPELP----QNLKQLHVETNPL 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 13/151 (8%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I KI+P     L  L  L LS N  ++    +      +L+ + +   E T +       
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNG 143

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           L+ +  ++L +  PL    +EN     G+  L ++ +   +++T     +   + PSL  
Sbjct: 144 LNQMIVVELGTN-PLKSSGIEN-GAFQGMKKLSYIRIADTNITT-----IPQGLPPSLTE 196

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           L L    +   +    +   ++L  L LS+N
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 28/159 (17%)

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS-- 188
                L+L NN   + +   F   + +L  + L   + + + P     L  L+ L LS  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 189 --SQIP------LSFLYLEN-------LSWLSGLSLLKHLDLTGVDLSTA---SDWFLVT 230
              ++P      L  L +          S  +GL+ +  ++L    L ++   +  F   
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--- 167

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             +  L  ++++      ++  +P     SL  L L  N
Sbjct: 168 QGMKKLSYIRIA----DTNITTIPQGLPPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 29/162 (17%)

Query: 120 IGKINPSLL-DLKHLVYLELSNNNFEKAQLP--VFLGSMGSLRHIDLSRAEFTGMIPYQL 176
           I K+  S+   L  ++ +EL  N  + + +    F G M  L +I ++    T +     
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNITTI---PQ 188

Query: 177 GNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTN 231
           G   +L  L L     +++  + L         GL+ L  L L+   +S   +       
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNGSL---A 237

Query: 232 MLPSLQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEF 271
             P L+ L L+    +N L ++P  +A+   +  + L  N  
Sbjct: 238 NTPHLRELHLN----NNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 27/153 (17%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
              L  L L  N   K       G + +L  + LS    + +    L N  +L+ L L+ 
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 189 ---SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFL---VTNMLPSLQVLKL 241
               ++P            +    ++ + L   ++S   S+ F          S   + L
Sbjct: 250 NKLVKVPGGL---------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 242 SACSLHNSLPELPI-----ANFSSLYTLDLSYN 269
                 N +    I             + L   
Sbjct: 301 F----SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/118 (24%), Positives = 38/118 (32%), Gaps = 21/118 (17%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKH 212
            LR +  S       +P  L    +   LDL     ++I               L  L  
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDG--------DFKNLKNLHT 80

Query: 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
           L L    +S  S        L  L+ L LS     N L ELP     +L  L +  NE
Sbjct: 81  LILINNKISKISPGAFAP--LVKLERLYLS----KNQLKELPEKMPKTLQELRVHENE 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 21/145 (14%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
             ++  L ++N +         +  + +L  + +   + T      L  L++L  LD+S 
Sbjct: 65  AHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 190 QIPLSFLYLENLSWLSGLSLLKHLDLTG----VDLSTASDWFLVTNMLPSLQVLKLSACS 245
               S      L+ ++ L  +  +DL+      D+            LP L+ L +    
Sbjct: 122 ----SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT-------LPELKSLNIQFDG 170

Query: 246 LHNSLPELPIANFSSLYTLDLSYNE 270
           +H+      I +F  L  L      
Sbjct: 171 VHDY---RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +   +  L Y+ L+N N         +    +++ + ++    T   P  +  LSNL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 186 DLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
            +    +       + +  LSGL+ L  LD++      +    +  N LP +  + LS  
Sbjct: 94  RIMGKDVTS-----DKIPNLSGLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYN 146

Query: 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273
                +   P+     L +L++ ++   +
Sbjct: 147 GAITDIM--PLKTLPELKSLNIQFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
             +++L Y+ L++        + +L+ +     +K L +  +  +  +      + L +L
Sbjct: 41  AQMNSLTYITLANI------NVTDLTGIEYAHNIKDLTINNIHATNYN----PISGLSNL 90

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274
           + L++    + +      ++  +SL  LD+S++  D++
Sbjct: 91  ERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDS 127

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 118 KLIGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
               KI       L  L  LE+  ++ +  +       + ++ H+ L   +   ++   +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFV 218

Query: 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLS--TASDWFLVTNMLP 234
              S+++ L+L     L   +   LS     SL+K      V ++  +      + N + 
Sbjct: 219 DVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277

Query: 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
            L  L+ S   L  S+P+      +SL  + L  N +D
Sbjct: 278 GLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 34/180 (18%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LG 177
           +  ++ S    L  L +L L  N ++          +  L+ + +   +    I  +   
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 178 NLSNLQYLDLSS-QI----PLSFLYLENLSWL---------------SGLSLLKHLDLTG 217
            L+ L+ L++ +  +    P S   ++N+S L                  S ++ L+L  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 218 VDLST------ASDWFLVTNMLPSLQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYN 269
            DL T      ++          + + +K++      SL ++   +   S L  L+ S N
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKIT----DESLFQVMKLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I  I+ S L    +L  L L++N     +   F   +GSL H+DLS    + +       
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 179 LSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPS 235
           LS+L +L+L           L   S  S L+ L+ L +  +D  T      F     L  
Sbjct: 123 LSSLTFLNLLGNPY----KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG---LTF 175

Query: 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           L+ L++ A  L  S     + +  ++  L L   
Sbjct: 176 LEELEIDASDL-QSYEPKSLKSIQNVSHLILHMK 208

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 21/133 (15%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-QI----PLSFLYLENL---------- 201
           +++ +DLS    T +    L    NLQ L L+S  I      SF  L +L          
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 202 -----SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIA 256
                SW   LS L  L+L G    T  +   + + L  LQ+L++        +     A
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 257 NFSSLYTLDLSYN 269
             + L  L++  +
Sbjct: 172 GLTFLEELEIDAS 184

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 33/154 (21%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
           +     L+L+  N     LP  L     +  +++++      +P    +L   +YLD   
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPASL---EYLDACD 109

Query: 189 ---SQIPLSFLYLENLSWLSG---------LSLLKHLDLTGVDLSTASDWFLVTNMLPSL 236
              S +P     L++L  +            +LL++++     L+       +  +  SL
Sbjct: 110 NRLSTLPELPASLKHL-DVDNNQLTMLPELPALLEYINADNNQLTM------LPELPTSL 162

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
           +VL +    L   LPELP     SL  LD+S N 
Sbjct: 163 EVLSVRNNQL-TFLPELP----ESLEALDVSTNL 191

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 28/155 (18%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
                   L   N  +A   +    +     + L+R   +  +P  L     +  L+++ 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQ 89

Query: 189 ---SQIPLSFLYLENLSWLSGLSL---------LKHLDLTGVDLSTASDWFLVTNMLPSL 236
                +P     LE L       L         LKHLD+    L+       +  +   L
Sbjct: 90  NALISLPELPASLEYLD-ACDNRLSTLPELPASLKHLDVDNNQLTM------LPELPALL 142

Query: 237 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
           + +       +N L  LP    +SL  L +  N+ 
Sbjct: 143 EYINAD----NNQLTMLP-ELPTSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 39/161 (24%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL---------- 179
              L +L++ NN      LP        L +I+    + T M+P    +L          
Sbjct: 119 PASLKHLDVDNNQLT--MLP---ELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQL 172

Query: 180 -------SNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL 228
                   +L+ LD+S      +P   +   +                   ++   +  L
Sbjct: 173 TFLPELPESLEALDVSTNLLESLPAVPVRNHHS-----EETEIFFRCRENRITHIPENIL 227

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
               L     + L      N L      + S        + 
Sbjct: 228 ---SLDPTCTIILE----DNPLSSRIRESLSQQTAQPDYHG 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 28/152 (18%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
             H+  L + +NN     LP        LR +++S  + T  +P     L  L       
Sbjct: 60  PAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 190 -QIPLSFLYLENLSWLSGLSL---------LKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
             +P     L  L W+ G  L         L+ L ++   L++      +  +   L  L
Sbjct: 114 THLPALPSGLCKL-WIFGNQLTSLPVLPPGLQELSVSDNQLAS------LPALPSELCKL 166

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
                  +N L  LP    S L  L +S N+ 
Sbjct: 167 WAY----NNQLTSLP-MLPSGLQELSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 31/161 (19%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  +      L  L              LP        L  + +   + T  +P     L
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLT-----HLPALP---SGLCKLWIFGNQLTS-LPVLPPGL 143

Query: 180 SNLQYLDLS-SQIPLSFLYLENLSWLSGLSL---------LKHLDLTGVDLSTASDWFLV 229
             L   D   + +P     L  L W     L         L+ L ++   L++      +
Sbjct: 144 QELSVSDNQLASLPALPSELCKL-WAYNNQLTSLPMLPSGLQELSVSDNQLAS------L 196

Query: 230 TNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
             +   L  L      L  SLP LP    S L  L +S N 
Sbjct: 197 PTLPSELYKLWAYNNRL-TSLPALP----SGLKELIVSGNR 232

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 26/169 (15%), Positives = 45/169 (26%), Gaps = 42/169 (24%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
              L  L   NN      LP+       L+ + +S  +    +P     L  L   +   
Sbjct: 160 PSELCKLWAYNNQLT--SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRL 213

Query: 189 SQIP-----LSFLYLEN---------LSWLSGLSL--------------LKHLDLTGVDL 220
           + +P     L  L +            S L  L +              L  L +    L
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL 273

Query: 221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           +   +  +    L S   + L      N L E  +     + +      
Sbjct: 274 TRLPESLI---HLSSETTVNLE----GNPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD--- 186
              L  L +S N      LP+       L  + + R + T  +P  L +LS+   ++   
Sbjct: 240 PSELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 187 --LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
             LS +   +   + +    SG  +   +        T +      + L   +  + +  
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 245 SLHNSLPELPIANFSSLYTLDLS 267
              +   +   A+  SL+   LS
Sbjct: 354 DRWHMFGQEDNADAFSLFLDRLS 376

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 39/173 (22%), Positives = 59/173 (34%), Gaps = 28/173 (16%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLG 177
           I  +  +     ++L  L L +N   +     F G +  L  +DLS  A+   + P    
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFH 102

Query: 178 NLSNLQYLDLS----SQIP---------LSFLYLEN-------LSWLSGLSLLKHLDLTG 217
            L  L  L L      ++          L +LYL++             L  L HL L G
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 218 VDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             +S+     F     L SL  L L    +   +      +   L TL L  N
Sbjct: 163 NRISSVPERAF---RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 31/142 (21%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP 192
              + L  N         F     +L  + L       +       L+ L+ LDLS    
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 193 LSFLYLENLSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLP 251
           L  +         GL  L  L L    L       F     L +LQ L L   +L  +LP
Sbjct: 93  LRSVDPA---TFHGLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQ-ALP 145

Query: 252 ELPIANFSSLYTLDLSYNEFDN 273
           +    +  +L  L L  N   +
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISS 167

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 23/134 (17%)

Query: 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
            L  L  L L     ++    +F G + +L+++ L       +      +L NL +L L 
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 189 S-QI----PLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLSTASDWFL 228
             +I      +F  L +L  L                 L  L  L L   +LS      L
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 229 VTNMLPSLQVLKLS 242
               L +LQ L+L+
Sbjct: 222 --APLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           +  DL +L +L L  N         F G + SL  + L +     + P+   +L  L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 186 DLSSQIPLSFLYLENLSW--LSGLSLLKHLDLTG 217
            L +        L  L    L+ L  L++L L  
Sbjct: 207 YLFA------NNLSALPTEALAPLRALQYLRLND 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 27/158 (17%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  I P L +LK+L +L L  N  +       L  +  L+ + L     + +    L +L
Sbjct: 80  LTDIKP-LANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDING--LVHL 133

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG---VDLSTASDWFLVTNMLPSL 236
             L+ L L +        + +++ LS L+ L  L L      D+   +        L  L
Sbjct: 134 PQLESLYLGNN------KITDITVLSRLTKLDTLSLEDNQISDIVPLAG-------LTKL 180

Query: 237 QVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDN 273
           Q L LS     N + +L  +A   +L  L+L   E  N
Sbjct: 181 QNLYLS----KNHISDLRALAGLKNLDVLELFSQECLN 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I +I          +   L   +       V    + S+  I  + ++   +    +  L
Sbjct: 14  IKQIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYL 67

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
            N+  L L+         L ++  L+ L  L  L L    +   S        L  L+ L
Sbjct: 68  PNVTKLFLNGN------KLTDIKPLANLKNLGWLFLDENKVKDLSS----LKDLKKLKSL 117

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
            L     HN + ++  + +   L +L L  N
Sbjct: 118 SLE----HNGISDINGLVHLPQLESLYLGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 30/163 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            +  +L  +  +  +N++ +  Q    +  + ++  + L+  + T + P  L NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 185 LDLSS-QIP----------LSFLYLEN-----LSWLSGLSLLKHLDLTGVDLSTASDWFL 228
           L L   ++           L  L LE+     ++ L  L  L+ L L    ++  +    
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT---- 150

Query: 229 VTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
           V + L  L  L L      N + ++ P+A  + L  L LS N 
Sbjct: 151 VLSRLTKLDTLSLE----DNQISDIVPLAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  ++  L DLK L  L L +N          L  +  L  + L   + T +    L  L
Sbjct: 102 VKDLSS-LKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV--LSRL 155

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           + L  L L          + ++  L+GL+ L++L L+   +S       +   L +L VL
Sbjct: 156 TKLDTLSLEDN------QISDIVPLAGLTKLQNLYLSKNHISDLRA---LAG-LKNLDVL 205

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
           +L            PI + S+L   +   N  D +L
Sbjct: 206 ELF----SQECLNKPINHQSNLVVPNTVKN-TDGSL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 7e-09
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 25/163 (15%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-Q 190
           +   L+LS+NN  + +       + +L  + LS      +       + NL+YLDLSS  
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 191 I----PLSFLYLENLSWL---------------SGLSLLKHLDLTGVDLST-ASDWFLVT 230
           +       F  L+ L  L                 ++ L+ L L+   +S    +     
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
           N LP L +L LS     N L +LP+ +   L     +     N
Sbjct: 160 NKLPKLMLLDLS----SNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +  I+      + +L YL+LS+N+       +F   + +L  + L       +      +
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFED 134

Query: 179 LSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
           ++ LQ L LS  Q  +S   +E +   + L  L  LDL+   L       L    L  L 
Sbjct: 135 MAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLSSNKLKK-----LPLTDLQKLP 187

Query: 238 VLKLSACSLHN 248
               +   LHN
Sbjct: 188 AWVKNGLYLHN 198

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 120 IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I KI+  +   L+ L  L +S N+  +    +      SL  + +       +       
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSG 145

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           L N+  +++    PL     E      GL  L +L ++   L+      +  ++  +L  
Sbjct: 146 LRNMNCIEMGGN-PLENSGFEP-GAFDGLK-LNYLRISEAKLTG-----IPKDLPETLNE 197

Query: 239 LKLSACSLHNSLPELP---IANFSSLYTLDLSYN 269
           L L     HN +  +    +  +S LY L L +N
Sbjct: 198 LHLD----HNKIQAIELEDLLRYSKLYRLGLGHN 227

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS-- 188
                L+L NN+  + +   F G +  L  + L   + + +       L  LQ L +S  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 189 --SQIP------LSFLYLEN-------LSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 233
              +IP      L  L + +           SGL  +  +++ G  L  +       + L
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             L  L++S       L  +P     +L  L L +N
Sbjct: 173 -KLNYLRIS----EAKLTGIPKDLPETLNELHLDHN 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 19/149 (12%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
            + L  L L +N  +  +L   L     L  + L   +   +    L  L  L+ L L  
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 189 ---SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
              S++P     L+ L  +     L   ++T V ++                 + L    
Sbjct: 251 NKLSRVPAGLPDLKLLQVVY----LHTNNITKVGVNDFCPVGFGVK-RAYYNGISLF--- 302

Query: 246 LHNSLPELPI-----ANFSSLYTLDLSYN 269
            +N +P   +        +    +     
Sbjct: 303 -NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-Q 190
           HL  ++ S+       +P  +        +DL   + + +       L +L  L L + +
Sbjct: 34  HLRVVQCSDLGL--KAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL 250
           I      +   +  S L  L+ L ++   L       +  N+  SL  L++      N +
Sbjct: 90  IS----KIHEKA-FSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIH----DNRI 135

Query: 251 PELPIANFS---SLYTLDLSYNEFDNT 274
            ++P   FS   ++  +++  N  +N+
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENS 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 29/161 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            S  +L  +      N+N +       +    +L+ + LS  + + + P  L +L+ L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 185 LDLSS-QI----PLSFLYLENL----------SWLSGLSLLKHLDLTGVDLSTASDWFLV 229
           L ++  ++     +    L  L            L  L  L+ L +    L +       
Sbjct: 90  LSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 230 TNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
              L  L+VL L      N +     +     +  +DL+  
Sbjct: 146 LGFLSKLEVLDLH----GNEITNTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I ++ P    L + V   L   +       V    +  +++ +   +    +    +   
Sbjct: 9   INQVFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLAG--MQFF 62

Query: 180 SNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
           +NL+ L LS  QI        +LS L  L+ L+ L +    L       L       L  
Sbjct: 63  TNLKELHLSHNQI-------SDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSR 110

Query: 239 LKLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
           L L     +N L +   + +  +L  L +  N
Sbjct: 111 LFLD----NNELRDTDSLIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211
              + +    +L +   T ++      LS +Q  +  +        +++L+ +   + LK
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS------NIQSLAGMQFFTNLK 66

Query: 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270
            L L+   +S  S        L  L+ L ++     N L  L     + L  L L  NE
Sbjct: 67  ELHLSHNQISDLSP----LKDLTKLEELSVN----RNRLKNLNGIPSACLSRLFLDNNE 117

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           +  +N   +    L  L L NN          L  + +L  + +   +   ++   LG L
Sbjct: 97  LKNLNG--IPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM--LGFL 149

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           S L+ LDL          + N   L+ L  +  +DLTG                P L + 
Sbjct: 150 SKLEVLDLHGN------EITNTGGLTRLKKVNWIDLTGQKCVN-----EPVKYQPELYIT 198

Query: 240 KLSACSLHNSLPELPIANFSSLYTLDLSYN 269
                     +    I+N  S     + + 
Sbjct: 199 NTVKDPDGRWISPYYISNGGSYVDGCVLWE 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 22/151 (14%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
            ++  L+ +  L+L++           L  + +L+ + L   + T + P  L  L+NLQY
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 185 LDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243
           L + + Q+        +L+ L+ LS L  L      +S  S        LP+L  + L  
Sbjct: 156 LSIGNAQV-------SDLTPLANLSKLTTLKADDNKISDISPL----ASLPNLIEVHLK- 203

Query: 244 CSLHNSLPEL-PIANFSSLYTLDLSYNEFDN 273
              +N + ++ P+AN S+L+ + L+     N
Sbjct: 204 ---NNQISDVSPLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 28/151 (18%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L +L  +  LELS N  +       +  + S++ +DL+  + T + P  L  LSNLQ 
Sbjct: 79  APLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 185 LDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTG---VDLSTASDWFLVTNMLPSLQVLK 240
           L L   QI        N+S L+GL+ L++L +      DL+  ++       L  L  LK
Sbjct: 134 LYLDLNQI-------TNISPLAGLTNLQYLSIGNAQVSDLTPLAN-------LSKLTTLK 179

Query: 241 LSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
                  N + ++ P+A+  +L  + L  N+
Sbjct: 180 AD----DNKISDISPLASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ 175
               +  I   +  L +L+ LEL +N          L ++  +  ++LS      +    
Sbjct: 49  FGTGVTTIEG-VQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNVSA-- 102

Query: 176 LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 235
           +  L +++ LDL+S        + +++ L+GLS L+ L L    ++  S        L +
Sbjct: 103 IAGLQSIKTLDLTST------QITDVTPLAGLSNLQVLYLDLNQITNISP----LAGLTN 152

Query: 236 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNE 270
           LQ L +     +  + +L P+AN S L TL    N+
Sbjct: 153 LQYLSIG----NAQVSDLTPLANLSKLTTLKADDNK 184

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I  I P    L + + +    +N       V    +  +  +       T +    +  L
Sbjct: 9   INVIFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYL 62

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239
           +NL  L+L          + +L+ L  L+ +  L+L+G  L   S    +   L S++ L
Sbjct: 63  NNLIGLELKDN------QITDLAPLKNLTKITELELSGNPLKNVSA---IAG-LQSIKTL 112

Query: 240 KLSACSLHNSLPEL-PIANFSSLYTLDLSYN 269
            L+       + ++ P+A  S+L  L L  N
Sbjct: 113 DLT----STQITDVTPLAGLSNLQVLYLDLN 139

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 15/150 (10%)

Query: 105 EPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164
           +P       D  SK + + +   ++   +  L L++ +         L  +  + H+DLS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLS 471

Query: 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224
                  +P  L  L  L+ L  S         LEN+  ++ L  L+ L L    L  ++
Sbjct: 472 HNRLRA-LPPALAALRCLEVLQASDN------ALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 225 DWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
               + +  P L +L L      NSL +  
Sbjct: 525 AIQPLVS-CPRLVLLNLQ----GNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168
           L++ + E    +  I   +  L  L+Y + +   F        L ++  +R   L     
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST------LKAVDPMRAAYLDDLRS 427

Query: 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL 228
             ++   +  +       L     L+   L  L  L  L L+ HLDL+   L        
Sbjct: 428 KFLLENSVLKMEYADVRVLH----LAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL- 482

Query: 229 VTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDN 273
               L  L+VL+ S     N+L  +  +AN   L  L L  N    
Sbjct: 483 --AALRCLEVLQAS----DNALENVDGVANLPRLQELLLCNNRLQQ 522

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 7/153 (4%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLS 180
             + S   LK L   ++ ++ F   Q  ++   S  ++++  +S      M+      +S
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS--KIS 324

Query: 181 NLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 240
              +LD S+ + L+    EN      L+ L+ L L    L   S    +T  + SLQ L 
Sbjct: 325 PFLHLDFSNNL-LTDTVFENCG---HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 241 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
           +S  S+     +   +   SL +L++S N   +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 21/145 (14%), Positives = 46/145 (31%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
             +L +L+LS N F+   +    G+M  L+ + LS           + +L+  + L +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249
           +        E L   +  SL                       L    +  +   +  + 
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 250 LPELPIANFSSLYTLDLSYNEFDNT 274
              +     ++    +L+ N  + T
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETT 233

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 42/147 (28%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS- 188
           +K L  L++S N+    +         SL  +++S    T  I   L     ++ LDL  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 189 ---SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
                IP   + LE          L+ L++    L                         
Sbjct: 431 NKIKSIPKQVVKLEA---------LQELNVASNQLK------------------------ 457

Query: 246 LHNSLPELPIANFSSLYTLDLSYNEFD 272
              S+P+      +SL  + L  N +D
Sbjct: 458 ---SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 13/157 (8%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I ++  S +  L  L  L +S+N  +   + VF      L ++DLS  +   +       
Sbjct: 33  ISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKI---SCHP 88

Query: 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
             NL++LDLS     +F  L        +S LK L L+   L            +  L +
Sbjct: 89  TVNLKHLDLSF---NAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNI 140

Query: 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
            K+          +          T  L      N  
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 25/156 (16%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS----- 180
            L     L +L+ S+N   +    + +  +  L + D S    T +    L  L+     
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262

Query: 181 --NLQYLDLSSQIPLSFLYLENLS-----WLSGLSLLKHLDLTGVDLSTASDWFLVTNML 233
             +L  +DL+    L +   E         ++  + L  LD     ++      L  +  
Sbjct: 263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE-----LDLSQN 317

Query: 234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
           P L  L L+    +  L EL +++ + L +L     
Sbjct: 318 PKLVYLYLN----NTELTELDVSHNTKLKSLSCVNA 349

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 22/148 (14%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
            +     L YL  + N   +    + +     L  +D    +    +   +   + L  L
Sbjct: 122 DVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
           D S         +  L  +S   LL  L+    +++      L  N    L  L  S   
Sbjct: 176 DCSFN------KITELD-VSQNKLLNRLNCDTNNITK-----LDLNQNIQLTFLDCS--- 220

Query: 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273
             N L E+ +   + L   D S N    
Sbjct: 221 -SNKLTEIDVTPLTQLTYFDCSVNPLTE 247

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 22/144 (15%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           S   L  L  L+  N++     +   +  +  L  +  +    T +    L   +NL YL
Sbjct: 37  SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90

Query: 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
              S        L NL  ++ L+ L +L+     L+      L  +  P L  L  +   
Sbjct: 91  ACDSN------KLTNLD-VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCA--- 135

Query: 246 LHNSLPELPIANFSSLYTLDLSYN 269
             N+L E+ +++ + L  LD   N
Sbjct: 136 -RNTLTEIDVSHNTQLTELDCHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 22/141 (15%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
               V         +     +    + +L  +D   +  T M    +  L+ L  L  +S
Sbjct: 20  FASEVAAAFEMQATD----TISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249
                   +  L  LS  + L +L      L+      L    L  L  L        N 
Sbjct: 74  N------NITTLD-LSQNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCD----TNK 117

Query: 250 LPELPIANFSSLYTLDLSYNE 270
           L +L ++    L  L+ + N 
Sbjct: 118 LTKLDVSQNPLLTYLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 23/151 (15%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             +     L  L+ S N   +    + +     L  ++      T  +   L     L +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           LD SS        L  +  ++ L+ L + D +   L+      L  + L  L  L     
Sbjct: 217 LDCSS------NKLTEID-VTPLTQLTYFDCSVNPLTE-----LDVSTLSKLTTLHCI-- 262

Query: 245 SLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
                L E+ + + + L             L
Sbjct: 263 --QTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 24/157 (15%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +   + + L     L  L L      K  L V  G++  L  +DLS  +    +P     
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 179 LSNLQYLDLSS-QIPLSFLYLENLS--WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 235
           L  L  LD+S  ++        +L    L GL  L+ L L G +L T      +    P 
Sbjct: 99  LPALTVLDVSFNRL-------TSLPLGALRGLGELQELYLKGNELKTLPPG--LLTPTPK 149

Query: 236 LQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYN 269
           L+ L L+    +N+L ELP        +L TL L  N
Sbjct: 150 LEKLSLA----NNNLTELPAGLLNGLENLDTLLLQEN 182

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
            GKI     +  +L +L L N           L  +  L+ ++LS     G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLISVS---NLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 180 SNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLPSLQ 237
            NL +L+LS  ++      +  L  L  L  LK LDL   +++  +D    V  +LP L 
Sbjct: 95  PNLTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

Query: 238 VL 239
            L
Sbjct: 151 YL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
            GK+     + + L +L   N           L  +  L+ ++LS    +G +       
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 180 SNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLPSLQ 237
            NL +L+LS  +I      L  +  L  L  LK LDL   +++  +D    V  +LP L 
Sbjct: 88  PNLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143

Query: 238 VL 239
            L
Sbjct: 144 YL 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           I ++N +    L+ L +L++                + SL  + L   +F  +       
Sbjct: 42  IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101

Query: 179 LSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237
           L+NL+ L L+   +  + L   + ++   L+ L+ L L   ++          N +    
Sbjct: 102 LANLEVLTLTQCNLDGAVL---SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFH 157

Query: 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSY 268
           VL L+     N +  +   +  +      + 
Sbjct: 158 VLDLT----FNKVKSICEEDLLNFQGKHFTL 184

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 24/172 (13%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLS 180
           KI   +L   + +     + NF+      F G     ++  DLS+++   ++     + +
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

Query: 181 NLQYLDLSS-QI----PLSFLYLENLSWL---------------SGLSLLKHLDLTGVDL 220
           +L+ L L+  +I      +F  L +L  L                 L  L+ LDL+   +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272
               D       LP+L+ L L    L  S+P+      +SL  + L  N +D
Sbjct: 360 RALGD--QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 18/159 (11%)

Query: 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
            L  L  L L +NN +K Q   F  +M     +DL+  +   +    L N     +  L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 189 -SQIPLSFLYLENLSWLS-----GLSLLKHLDLTGVDL-STASDWFLVTNMLPSLQVLKL 241
            S I L  +    L W         + +  LDL+G     + +  F        +Q L L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 242 SACSL------HNSLPELPIANF-----SSLYTLDLSYN 269
           S          H +  +     F     S + T DLS +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYLDLS-- 188
           H+ Y++LS N+  +     F   +  L+ + + +     +I       LS+L  L L   
Sbjct: 31  HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 189 --SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA---SDWFLVTNMLPSLQVLKLSA 243
              Q+             +GL+ L+ L LT  +L  A    ++F     L SL++L L  
Sbjct: 90  QFLQLETGAF--------NGLANLEVLTLTQCNLDGAVLSGNFF---KPLTSLEMLVLRD 138

Query: 244 CSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
            ++    P     N    + LDL++N+  +
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 9/164 (5%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLP--VFLGSMGSLRHIDLSRAEFTGMIPYQL 176
             ++     + L +L  L L+  N + A L    F   + SL  + L       + P   
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQPASF 149

Query: 177 -GNLSNLQYLDLS----SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231
             N+     LDL+      I    L        + L L         +     +      
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275
              S+  L LS      S+ +      +      L  +   N  
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI--PYQLGNLSNLQYLD 186
            L  L+ L+L  N F + +   F G + +L  + L++    G +        L++L+ L 
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 187 LSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
           L    I      ++  S+   +     LDLT   + +  +  L+        +L+LS+ +
Sbjct: 136 LRDNNIK----KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 246 LH----NSLPELPIANF---SSLYTLDLSYNEFDNTL 275
           L       L      N    +S+ TLDLS N F  ++
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
               L   ++L  L + N    +      L  +G LR++ + ++    + P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 183 QYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217
             L+LS    L  L  + +  LS    L+ L L+G
Sbjct: 83  SRLNLSFN-ALESLSWKTVQGLS----LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 257
           L++L  L G   L  L +         +   +   L  L+ L +    L   +       
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGL-RFVAPDAFHF 78

Query: 258 FSSLYTLDLSYN 269
              L  L+LS+N
Sbjct: 79  TPRLSRLNLSFN 90

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 120 IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNL 179
           I  I      L     ++ S+N   K         +  L+ + ++      +       L
Sbjct: 31  IPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87

Query: 180 SNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLPSLQ 237
            +L  L L++  +      L +L  L+ L  L +L +    ++        V   +P ++
Sbjct: 88  PDLTELILTNNSLV----ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143

Query: 238 VL 239
           VL
Sbjct: 144 VL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 175 QLGNLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 233
           Q  N    + LDL   +IP     +ENL   + L     +D +  ++     +     +L
Sbjct: 14  QYTNAVRDRELDLRGYKIP----VIENLG--ATLDQFDAIDFSDNEIRKLDGF----PLL 63

Query: 234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273
             L+ L ++   +   + E        L  L L+ N    
Sbjct: 64  RRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSLVE 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 45/280 (16%), Positives = 80/280 (28%), Gaps = 86/280 (30%)

Query: 9   VVLSTATFGFHGFDEFGELLALANIKIGYCNGSAYIGCIQSE--REALLR-------FKQ 59
           + L   +      DE   LL              Y+ C   +  RE L           +
Sbjct: 289 ISLDHHSMTLTP-DEVKSLLLK------------YLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 60  DLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGN--PFLH-----------DDEP 106
            ++D       W   NC         D    ++E  L    P  +               
Sbjct: 336 SIRDGLATWDNWKHVNC---------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 107 --------FWLEDYKDETSKLIGK-INPSLLDLK--------HLVYLELSNNNFEKAQL- 148
                    W +  K +   ++ K    SL++ +          +YLEL      +  L 
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 149 PVFLGSMGSLRHIDLSRAE-------FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENL 201
              +      +  D            F   I + L N+ + + + L   + L F +LE  
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ- 505

Query: 202 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241
                   ++H          ++ W    ++L +LQ LK 
Sbjct: 506 -------KIRH---------DSTAWNASGSILNTLQQLKF 529

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 47/215 (21%)

Query: 51  REALLRFKQDLKDPANRLALWSDGNCC-TW-AGVVCNDSTGHVLELRLGNPFLHDDEPFW 108
           R+ALL  +     PA  + +        TW A  VC        +++    F    + FW
Sbjct: 141 RQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSY-----KVQCKMDF----KIFW 186

Query: 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSM-GSLRHIDLSRAE 167
           L      + + + ++   L  L + +    ++ +   + + + + S+   LR +  S+  
Sbjct: 187 LNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-- 241

Query: 168 FTGMIPYQ-----LGNLSN---LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD 219
                PY+     L N+ N       +LS +I L+  + +   +LS  +   H+ L    
Sbjct: 242 -----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHS 295

Query: 220 LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 254
           ++   D           +V  L    L     +LP
Sbjct: 296 MTLTPD-----------EVKSLLLKYLDCRPQDLP 319

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 27/174 (15%)

Query: 120 IGKINPSLLD-LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
           +  +          L  L+LS    +  +   +   +  L  + L+      +       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSG 98

Query: 179 LSNLQYLDLSS-QI----PLSFLYLENLSWL----------------SGLSLLKHLDLTG 217
           LS+LQ L      +         +L+ L  L                S L+ L+HLDL+ 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS--SLYTLDLSYN 269
             + +         +L  + +L LS     N +  +    F    L  L L  N
Sbjct: 159 NKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 19/119 (15%)

Query: 157 SLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWL-----SGLSLLK 211
           S +++DLS      +  Y   +   LQ LDLS            +  +       LS L 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC---------EIQTIEDGAYQSLSHLS 79

Query: 212 HLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
            L LTG  + + A   F   + L SLQ L     +L  SL   PI +  +L  L++++N
Sbjct: 80  TLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 14/146 (9%)

Query: 126 SLLDLKHLVYLELS-NNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             +     V L++  N N    +   F+G       + L++      I     N + L  
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE 181

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244
           L+LS    L  L         G S    LD++   + +   + L    L  L+       
Sbjct: 182 LNLSDNNNLEEL---PNDVFHGASGPVILDISRTRIHSLPSYGL--ENLKKLRARST--- 233

Query: 245 SLHNSLPELP-IANFSSLYTLDLSYN 269
               +L +LP +    +L    L+Y 
Sbjct: 234 ---YNLKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 32/168 (19%)

Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIPYQLGNLSNLQYLDLS 188
              L  +E+S N+  +        ++  L  I + +A     + P    NL NLQYL +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 189 ----SQIP-LSFLYLENLSWL----------------SGLS-LLKHLDLTGVDLSTASDW 226
                 +P +  ++      L                 GLS     L L    +    + 
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172

Query: 227 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL---YTLDLSYNEF 271
               N     ++        +N+L ELP   F        LD+S    
Sbjct: 173 AF--NGTQLDELNLSD----NNNLEELPNDVFHGASGPVILDISRTRI 214

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 130 LKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYLDL 187
           LK L  L L  N  +          +M SL  +D+S          +      ++  L+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 247
           SS +      L    +      +K LDL    + +          L +LQ L +++  L 
Sbjct: 436 SSNM------LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT---HLQALQELNVASNQL- 485

Query: 248 NSLPELPIANFSSLYTLDLSYNEFD 272
            S+P+      +SL  + L  N +D
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 5/144 (3%)

Query: 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185
           S   LK L+   + N  F  ++  ++      +    LS ++   +      + S+  +L
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYS-VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245
           + +  +  +    +  S    L  L+ L L    L       L+T  + SL+ L +S  S
Sbjct: 359 NFTQNV-FTDSVFQGCS---TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 246 LHNSLPELPIANFSSLYTLDLSYN 269
           L++   +   A   S+  L+LS N
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSN 438

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 2/148 (1%)

Query: 130 LKHLVYLELSN--NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
              LV L +S   +    + L   +    +L+ + L+RA     +   L     L+ L  
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 247
                     + +   ++     +   L+G   +  +    V ++   L  L LS  ++ 
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

Query: 248 NSLPELPIANFSSLYTLDLSYNEFDNTL 275
           +      +     L  L +     D  L
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 128 LDLKHLVYLELSN------NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-NLS 180
           ++LK   +    N        +    +     S   L  I L R   T      +  +  
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 181 NLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL--VTNMLPSLQV 238
           N + L LSS    S   L  ++  +    LK LDL   D+   S  +L    +   SL  
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 239 LKLSACSLH---NSLPELPIANFSSLYTLDLSYNEFDNTL 275
           L +S  +     ++L  L +    +L +L L+       L
Sbjct: 189 LNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKL 227

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 24/162 (14%)

Query: 113 KDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI 172
           KD       + +    + +  V L       EK  +   L ++ + +H+ LS      + 
Sbjct: 8   KDAIRIFEERKSVVATEAE-KVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKIS 64

Query: 173 PYQLGNLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231
              L  + NL+ L L    I      +ENL  ++    L+ L ++   +++ S       
Sbjct: 65  S--LSGMENLRILSLGRNLIK----KIENLDAVAD--TLEELWISYNQIASLSGI----E 112

Query: 232 MLPSLQVLKLSACSLHNSLPEL----PIANFSSLYTLDLSYN 269
            L +L+VL +S    +N +        +A    L  L L+ N
Sbjct: 113 KLVNLRVLYMS----NNKITNWGEIDKLAALDKLEDLLLAGN 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYLDLSSQI 191
              L+L   +        F   + ++  I +S       +      NLS + ++++ +  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 192 PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 251
            L+++   +   L  L LLK L +    L    D   V +      +L+++      S+P
Sbjct: 92  NLTYI---DPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-TDIFFILEITDNPYMTSIP 147

Query: 252 ELPIANFSS-LYTLDLSYNEF 271
                   +   TL L  N F
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF 168

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 16/234 (6%)

Query: 48  QSEREALLRFKQDLKDPANRLALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPF 107
               E +    + LKD               + G  C+D    ++E +            
Sbjct: 88  DEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWG 147

Query: 108 WLEDYKDETSKL-IGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166
            ++  + E S +    ++P L  +  L  L++   N     L +      +L+ +++   
Sbjct: 148 DIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN----NLSIGKKPRPNLKSLEIISG 203

Query: 167 EFTGMIPYQLG--NLSNLQYLDLSSQIP-----LSFLYLENLSWLSGLSLLKHLDLTGVD 219
                +   +   +L NL+ L L   +              L        LK L +   +
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 220 LSTASDWFLVTN-MLPSLQVLKLSACSLHNSLPEL---PIANFSSLYTLDLSYN 269
                    + + +LP L+ + +SA  L +    L    +     L  +++ YN
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.36
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.73

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.4e-33  Score=242.32  Aligned_cols=222  Identities=25%  Similarity=0.399  Sum_probs=169.1

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCC---CCc-----ccccc
Q 041140           45 GCIQSEREALLRFKQDLKDPANRLALW-SDGNCCT--WAGVVCNDST--GHVLELRLGNPFLHD---DEP-----FWLED  111 (275)
Q Consensus        45 ~~~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~---l~~-----~~L~~  111 (275)
                      .|.++|++||.+||+++.+|. .+.+| .+.+||.  |.||+|+...  ++|++++++++.+.+   +..     ..|+.
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            588999999999999998776 67899 5678998  9999998644  899999999999875   221     36778


Q ss_pred             ccCCC-CcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          112 YKDET-SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       112 l~l~~-n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      |++++ |.+.+.+|..++++++|++|++++|.+++. +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            88884 888888888888888888888888888865 7888888888888888888888888888888888888888888


Q ss_pred             CCCCcccccccccccCCC-CCCeeeccCCCCCCC-Cc--------------------hhhhhCCCCCCcEEeccCCcCCC
Q 041140          191 IPLSFLYLENLSWLSGLS-LLKHLDLTGVDLSTA-SD--------------------WFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       191 ~~~~~~~~~~l~~l~~l~-~L~~L~L~~n~l~~~-~~--------------------~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      .+.+..|..    +..++ +|++|++++|.+++. +.                    .+..+..+++|+.|++++|++++
T Consensus       160 ~l~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          160 RISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCEEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            776555544    55555 566666666655532 11                    13355666777777777777766


Q ss_pred             CCCCcccCCCCCcCEEecccCcCcee
Q 041140          249 SLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      . ++ .+..+++|++|++++|+++|.
T Consensus       236 ~-~~-~~~~l~~L~~L~Ls~N~l~~~  259 (313)
T 1ogq_A          236 D-LG-KVGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             B-GG-GCCCCTTCCEEECCSSCCEEC
T ss_pred             e-cC-cccccCCCCEEECcCCcccCc
Confidence            5 33 266677777777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=3.2e-30  Score=247.56  Aligned_cols=215  Identities=25%  Similarity=0.280  Sum_probs=142.6

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCceEecCCCCcEEEEEcCCCCCCCC-------------------
Q 041140           45 GCIQSEREALLRFKQDLKDPANRLALW-SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDD-------------------  104 (275)
Q Consensus        45 ~~~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l-------------------  104 (275)
                      ...++|++||++||+++.+|. .+++| .+.+||.|.||+|+  .++|++++++++.+.+.                   
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            335789999999999998887 88999 57899999999998  58999999999876542                   


Q ss_pred             ------------Cc-cccccccCCCCcceeecCc--cccCCCCCCEEECCCCCCCCCCcchhh-hCCccCCEEECCCCCC
Q 041140          105 ------------EP-FWLEDYKDETSKLIGKINP--SLLDLKHLVYLELSNNNFEKAQLPVFL-GSMGSLRHIDLSRAEF  168 (275)
Q Consensus       105 ------------~~-~~L~~l~l~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l  168 (275)
                                  .. .+|++|++++|.+.|.+|.  .++++++|++|++++|.+.+. .|..+ .++++|++|++++|.+
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence                        00 2466677777777777776  677777777777777776654 45443 5666677777777766


Q ss_pred             CCCCccc---ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          169 TGMIPYQ---LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       169 ~~~lp~~---l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      ++..|..   +.++++|++|++++|.+.+..+      +..+++|++|++++|.+++..+   .++.+++|++|++++|+
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNK  234 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSC
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCc
Confidence            6655554   5556666666666655443222      2455566666666666655432   24555566666666666


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++. .+..+..+++|++|++++|.++|
T Consensus       235 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~  261 (768)
T 3rgz_A          235 LSGD-FSRAISTCTELKLLNISSNQFVG  261 (768)
T ss_dssp             CCSC-HHHHTTTCSSCCEEECCSSCCEE
T ss_pred             CCCc-ccHHHhcCCCCCEEECCCCcccC
Confidence            5554 44455555555555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.2e-29  Score=218.82  Aligned_cols=219  Identities=20%  Similarity=0.220  Sum_probs=167.2

Q ss_pred             CCCCHHHHHHHHHHHhcC-CCCCCCCCCC-----CCCCCcccCceEecC--------CCCcEEEEEcCCCCCCCCCc---
Q 041140           44 IGCIQSEREALLRFKQDL-KDPANRLALW-----SDGNCCTWAGVVCND--------STGHVLELRLGNPFLHDDEP---  106 (275)
Q Consensus        44 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~W-----~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~l~~---  106 (275)
                      .....+|+++|.+||+++ .++......|     ...++|.|.|+.|..        ...+|+.|+++++.+..+..   
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~  101 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF  101 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhh
Confidence            445678999999999988 5666666778     257899999999952        34789999999999887654   


Q ss_pred             --cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccC------
Q 041140          107 --FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN------  178 (275)
Q Consensus       107 --~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~------  178 (275)
                        ..|+.|++++|.++ .+|..++++++|++|++++|.++.  +|..+..+++|++|++++|.+.+.+|..++.      
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence              37888999999998 899999999999999999999994  8999999999999999998888888877654      


Q ss_pred             ---CCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCccc
Q 041140          179 ---LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI  255 (275)
Q Consensus       179 ---l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l  255 (275)
                         +++|++|++++|.+. ..|..    +.++++|++|++++|.+++.+.   .+..+++|++|++++|.+.+. .+..+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~-~p~~~  249 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPAS----IANLQNLKSLKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRN-YPPIF  249 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGG----GGGCTTCCEEEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCB-CCCCT
T ss_pred             hccCCCCCEEECcCCCcC-cchHh----hcCCCCCCEEEccCCCCCcCch---hhccCCCCCEEECcCCcchhh-hHHHh
Confidence               888888888888776 44443    6677777777777777776643   455566666666666666655 44455


Q ss_pred             CCCCCcCEEecccCcCcee
Q 041140          256 ANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       256 ~~l~~L~~L~L~~N~l~g~  274 (275)
                      +.+++|++|++++|.+.+.
T Consensus       250 ~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          250 GGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             TCCCCCCEEECTTCTTCCB
T ss_pred             cCCCCCCEEECCCCCchhh
Confidence            5666666666666555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=3.2e-28  Score=229.03  Aligned_cols=218  Identities=17%  Similarity=0.155  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCC--------CCCC-CCCCCccc---CceEecCCCCcEEEEEcCCCCCCCCCc------c
Q 041140           46 CIQSEREALLRFKQDLKDPANR--------LALW-SDGNCCTW---AGVVCNDSTGHVLELRLGNPFLHDDEP------F  107 (275)
Q Consensus        46 ~~~~~~~~L~~~~~~~~~~~~~--------~~~W-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~l~~------~  107 (275)
                      ....|++||.++++++.++.+.        ..+| .+.++|.|   .||+|+. .++|++|+|+++.+.+.-+      .
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCc
Confidence            3457999999999999666443        2369 57899999   9999986 4899999999996543111      1


Q ss_pred             ccccccCCCC----------------------------------------------------------------------
Q 041140          108 WLEDYKDETS----------------------------------------------------------------------  117 (275)
Q Consensus       108 ~L~~l~l~~n----------------------------------------------------------------------  117 (275)
                      .|+.|++++|                                                                      
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            3444444444                                                                      


Q ss_pred             --------cceeecCccccCCCCCCEEECCCCCCCCC----------------Ccchhhh--CCccCCEEECCCCCCCCC
Q 041140          118 --------KLIGKINPSLLDLKHLVYLELSNNNFEKA----------------QLPVFLG--SMGSLRHIDLSRAEFTGM  171 (275)
Q Consensus       118 --------~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~----------------~~p~~~~--~l~~L~~L~L~~n~l~~~  171 (275)
                              +++| +|+.++++++|++|++++|.+++.                .+|..++  ++++|++|++++|.+.+.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                    4445 666677777777777777776651                0456666  677777777777777767


Q ss_pred             CcccccCCCCCCeEEcccCC-CCC-cccccccccccCC------CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          172 IPYQLGNLSNLQYLDLSSQI-PLS-FLYLENLSWLSGL------SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       172 lp~~l~~l~~L~~L~Ls~n~-~~~-~~~~~~l~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      +|..++++++|++|++++|. +.+ ..|..    ++.+      ++|++|++++|.++..|. ...++.+++|++|++++
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~----~~~L~~~~~l~~L~~L~L~~n~l~~ip~-~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDD----WQALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHH----HHHHHHSGGGGTCCEEECCSSCCSSCCC-HHHHTTCTTCCEEECCS
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHH----HHhhhccccCCCCCEEECCCCcCCccCc-hhhhccCCCCCEEeCcC
Confidence            77777777777777777775 554 44443    3333      667777777777764431 11456667777777777


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      |+++|. .| .+..+++|++|++++|+++
T Consensus       340 N~l~g~-ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          340 NQLEGK-LP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             CCCEEE-CC-CCEEEEEESEEECCSSEEE
T ss_pred             CcCccc-hh-hhCCCCCCCEEECCCCccc
Confidence            777655 33 5666677777777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.5e-27  Score=228.57  Aligned_cols=222  Identities=18%  Similarity=0.143  Sum_probs=161.3

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCC-CCCCCCC--ccc------------CceEecCCCCcEEEEEcCCCCCCCCCc--
Q 041140           44 IGCIQSEREALLRFKQDLKDPANRLA-LWSDGNC--CTW------------AGVVCNDSTGHVLELRLGNPFLHDDEP--  106 (275)
Q Consensus        44 ~~~~~~~~~~L~~~~~~~~~~~~~~~-~W~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~l~~--  106 (275)
                      +.+..+|++||.+||+++.+|.+... .|...++  |.|            .||+|+. .+||++|+|+++.+.+.-+  
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~  342 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDA  342 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGG
T ss_pred             cccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchH
Confidence            34457899999999999977622221 1222355  999            9999986 6899999999998753211  


Q ss_pred             ----cccccccC-CCC----------------------------------------------------------------
Q 041140          107 ----FWLEDYKD-ETS----------------------------------------------------------------  117 (275)
Q Consensus       107 ----~~L~~l~l-~~n----------------------------------------------------------------  117 (275)
                          ..|+.|++ ++|                                                                
T Consensus       343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~  422 (876)
T 4ecn_A          343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR  422 (876)
T ss_dssp             GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred             HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence                24555666 444                                                                


Q ss_pred             -------------cceeecCccccCCCCCCEEECCCCCCCC-----------------CCcchhhh--CCccCCEEECCC
Q 041140          118 -------------KLIGKINPSLLDLKHLVYLELSNNNFEK-----------------AQLPVFLG--SMGSLRHIDLSR  165 (275)
Q Consensus       118 -------------~l~~~lp~~l~~l~~L~~L~Ls~n~l~~-----------------~~~p~~~~--~l~~L~~L~L~~  165 (275)
                                   ++++ +|..++++++|++|++++|.+++                 . +|..++  ++++|++|++++
T Consensus       423 l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEES
T ss_pred             cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcC
Confidence                         4444 88889999999999999999988                 3 777777  999999999999


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCC-CCC-ccccc--ccc-cccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEe
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQI-PLS-FLYLE--NLS-WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK  240 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~-~~~-~~~~~--~l~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  240 (275)
                      |.+.+.+|..++++++|++|++++|. +.+ ..|..  .+. .+..+++|++|++++|.++..|. ...++.+++|+.|+
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLD  579 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEE
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEE
Confidence            99999999999999999999999997 766 44433  000 12344578888888887774432 12566777777777


Q ss_pred             ccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          241 LSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       241 L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +++|.++ . .| .++.+++|+.|++++|.++
T Consensus       580 Ls~N~l~-~-lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          580 CVHNKVR-H-LE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CTTSCCC-B-CC-CCCTTSEESEEECCSSCCS
T ss_pred             CCCCCcc-c-ch-hhcCCCcceEEECcCCccc
Confidence            7777777 4 33 5777777777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=6.5e-25  Score=183.47  Aligned_cols=189  Identities=22%  Similarity=0.253  Sum_probs=164.7

Q ss_pred             CCcccCceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh
Q 041140           75 NCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF  151 (275)
Q Consensus        75 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~  151 (275)
                      +|+.|.|..|..   ..+.++++++.+..++.   ..++.|++++|++.+..+..+.++++|++|++++|.+++. .+..
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~   78 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGV   78 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhH
Confidence            577899999953   34578999998776544   4789999999999998888999999999999999999996 6777


Q ss_pred             hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140          152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN  231 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  231 (275)
                      +..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+.
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--~~~~  152 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPA--GAFD  152 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTT
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCH--HHcC
Confidence            899999999999999999766677899999999999999988655544    7889999999999999998853  4678


Q ss_pred             CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      .+++|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus       153 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence            899999999999999986 777899999999999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.4e-24  Score=183.28  Aligned_cols=191  Identities=21%  Similarity=0.240  Sum_probs=99.7

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccC---------------------
Q 041140           74 GNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLD---------------------  129 (275)
Q Consensus        74 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~---------------------  129 (275)
                      .++|.|.|+.|.. ...++.++++++.+..++.   ..++.|++++|++++..+..+.+                     
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~   80 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI   80 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence            4677787777643 2233445555554443221   23444444444444333334444                     


Q ss_pred             ---CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          130 ---LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       130 ---l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                         +++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..    +..
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~  155 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV----FDK  155 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred             hcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH----ccC
Confidence               45555555555555442 2233444555555555555555433344455555555555555544332222    455


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++|++|++++|.+++.+.  ..+..+++|++|++++|++++. ++..+..+++|+.|++++|+++.
T Consensus       156 l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcccceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCeeC
Confidence            6666666666666665532  2355566666666666666654 55456666666667776666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=6.5e-24  Score=203.77  Aligned_cols=104  Identities=29%  Similarity=0.477  Sum_probs=62.3

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.+++++|.+.+..+      ..|+.|++++|++++.+|..+.++++|++|++++|.+++. +|..++.+++|++|+
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK  520 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEE
Confidence            356666777666654322      2455566666666666666666666666666666666655 666666666666666


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      +++|+++|.+|..++.+++|++|++++|.+.
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            6666666556655555555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.6e-22  Score=169.40  Aligned_cols=154  Identities=20%  Similarity=0.156  Sum_probs=127.8

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      .+++.|++++|.+..+..      ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLS  139 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEE
Confidence            456667777666655432      3577888999999876667788999999999999999986 666789999999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  242 (275)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..    +.++++|++|++++|.+++.+.  ..+..+++|+.|+++
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEec
Confidence            9999999655556899999999999999888665544    7889999999999999998853  357789999999999


Q ss_pred             CCcCCCC
Q 041140          243 ACSLHNS  249 (275)
Q Consensus       243 ~n~l~~~  249 (275)
                      +|.+...
T Consensus       214 ~N~~~c~  220 (270)
T 2o6q_A          214 ENPWDCT  220 (270)
T ss_dssp             SSCBCCS
T ss_pred             CCCeeCC
Confidence            9998765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=6.4e-24  Score=183.17  Aligned_cols=182  Identities=19%  Similarity=0.197  Sum_probs=144.2

Q ss_pred             CcEEEEEcCC-CCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEE
Q 041140           89 GHVLELRLGN-PFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHI  161 (275)
Q Consensus        89 ~~v~~l~l~~-~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L  161 (275)
                      ..++.+++++ |.+.+..+      ..|++|++++|.+++.+|..+.++++|++|++++|.+++. +|..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            4678889984 76553222      3677788888888888888888888888888888888876 78888888888888


Q ss_pred             ECCCCCCCCCCcccccCCC-CCCeEEcccCCCCCccccc-------------------ccccccCCCCCCeeeccCCCCC
Q 041140          162 DLSRAEFTGMIPYQLGNLS-NLQYLDLSSQIPLSFLYLE-------------------NLSWLSGLSLLKHLDLTGVDLS  221 (275)
Q Consensus       162 ~L~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~~~~~~~~~-------------------~l~~l~~l~~L~~L~L~~n~l~  221 (275)
                      ++++|++++.+|..++.++ +|++|++++|.+.+..|..                   ....+..+++|+.|++++|.++
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            8888888878888888877 7888888877655332211                   1123677889999999999998


Q ss_pred             CCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          222 TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       222 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                      +.++   .+..+++|++|++++|++++. .|..+..+++|++|++++|+++|.|
T Consensus       235 ~~~~---~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          235 FDLG---KVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             CBGG---GCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             eecC---cccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccccC
Confidence            7743   477889999999999999987 6668999999999999999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6e-22  Score=167.37  Aligned_cols=176  Identities=22%  Similarity=0.232  Sum_probs=144.2

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ..++.++++++.+.....    ..|+.|++++|.+++.  +.+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECC
Confidence            468888888888776554    3678888898898862  4688899999999999999885 55567889999999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|++++..+..++.+++|++|++++|.+.+..+..    +..+++|+.|++++|.+++.+.  ..+..+++|++|++++|
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCC
Confidence            99998666666888999999999999887655544    6788999999999999988752  35678899999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ++++. ++..+..+++|++|++++|+++|.
T Consensus       192 ~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          192 QLKSV-PDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCcc-CHHHHhCCcCCCEEEccCCCcccc
Confidence            99886 666788899999999999988764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=2.7e-22  Score=170.39  Aligned_cols=176  Identities=22%  Similarity=0.194  Sum_probs=102.4

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCC-CCCCCcchhhhCCccCCEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-FEKAQLPVFLGSMGSLRHI  161 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L  161 (275)
                      ..++.|++++|.+.....      ..|+.|++++|.+++..|..+.++++|++|++++|. ++.. .|..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEE
Confidence            456777777776654332      256666777777766666666677777777777775 5553 45566666777777


Q ss_pred             ECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140          162 DLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL  241 (275)
Q Consensus       162 ~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  241 (275)
                      ++++|.+.+..|..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+..+++|++|++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLL  184 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEEC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCH--HHhcCccccCEEEC
Confidence            77777666555556666666666666666655433332    4555556666666555554431  12444455555555


Q ss_pred             cCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          242 SACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       242 ~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      ++|.+++. .+..+..+++|++|++++|.++
T Consensus       185 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          185 HQNRVAHV-HPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccccc-CHhHccCcccccEeeCCCCcCC
Confidence            55555443 3334445555555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.3e-22  Score=176.06  Aligned_cols=176  Identities=22%  Similarity=0.197  Sum_probs=133.7

Q ss_pred             CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhC---------
Q 041140           89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS---------  154 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~---------  154 (275)
                      .+++.+++++|.+..++.     ..|+.|++++|.++ .+|..+.++++|++|++++|.+.+. +|..+..         
T Consensus       104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhcc
Confidence            467888888888775443     36777888888887 7788888888888888888777665 7766654         


Q ss_pred             CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCC
Q 041140          155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP  234 (275)
Q Consensus       155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  234 (275)
                      +++|++|++++|+++ .+|..++.+++|++|++++|.+.+. +..    +..+++|++|++++|.+.+..  +..++.++
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~----l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~  253 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPA----IHHLPKLEELDLRGCTALRNY--PPIFGGRA  253 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGG----GGGCTTCCEEECTTCTTCCBC--CCCTTCCC
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chh----hccCCCCCEEECcCCcchhhh--HHHhcCCC
Confidence            888888888888887 7788888888888888888877643 333    677888888888888777762  34667778


Q ss_pred             CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                      +|++|++++|.+.+. .|..+..+++|++|++++|++.|.|
T Consensus       254 ~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          254 PLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             CCCEEECTTCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCEEECCCCCchhh-cchhhhcCCCCCEEeCCCCCchhhc
Confidence            888888888887777 5556788888888888888877754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=2.6e-21  Score=159.48  Aligned_cols=163  Identities=18%  Similarity=0.109  Sum_probs=78.0

Q ss_pred             CCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCc
Q 041140           69 ALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQL  148 (275)
Q Consensus        69 ~~W~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~  148 (275)
                      ..|.+...|.|.++.|...  +++.+       ......+++.|++++|++++..|..+.++++|++|++++|.++.. .
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~--~l~~i-------p~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~   80 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK--RHASV-------PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-P   80 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS--CCSSC-------CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-C
T ss_pred             ccCCCCCEEeCCEeEccCC--CcCcc-------CCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-C
Confidence            3457888999999999641  11111       000113344444444455544444455555555555555555442 2


Q ss_pred             chhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhh
Q 041140          149 PVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL  228 (275)
Q Consensus       149 p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~  228 (275)
                      +..+..+++|++|++++|++++..+..+..+++|++|++++|.+. ..|..    +..+++|++|++++|.+++.+.  .
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~~--~  153 (229)
T 3e6j_A           81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG----IERLTHLTHLALDQNQLKSIPH--G  153 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT----GGGCTTCSEEECCSSCCCCCCT--T
T ss_pred             hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc----cccCCCCCEEECCCCcCCccCH--H
Confidence            223344555555555555555333333444555555555555444 22222    4444555555555555544431  2


Q ss_pred             hhCCCCCCcEEeccCCcCCC
Q 041140          229 VTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       229 ~~~~l~~L~~L~L~~n~l~~  248 (275)
                      .+..+++|+.|++++|.+..
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCT
T ss_pred             HHhCCCCCCEEEeeCCCccC
Confidence            34444455555555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-22  Score=172.26  Aligned_cols=192  Identities=23%  Similarity=0.261  Sum_probs=133.1

Q ss_pred             CcccCceEecCCC---------CcEEEEEcCCCCCCCCCc------cccccccCCCCccee-------------------
Q 041140           76 CCTWAGVVCNDST---------GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIG-------------------  121 (275)
Q Consensus        76 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~-------------------  121 (275)
                      .|.|.++.|....         ..++.|++++|.+..+..      ..|+.|++++|.++.                   
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            4778888886421         468888888887765432      245566666665542                   


Q ss_pred             ------ecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC-
Q 041140          122 ------KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS-  194 (275)
Q Consensus       122 ------~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~-  194 (275)
                            .+|..+..+++|++|++++|.++.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ 
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence                  2334455566666666666666553111356666777777777777766666667777777777777776654 


Q ss_pred             cccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       195 ~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ..+..    +..+++|++|++++|.+++.+  +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus       166 ~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          166 FLPDI----FTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             EECSC----CTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             cchhH----HhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCccc
Confidence            23333    778888999999999888763  34677888999999999999876 666788899999999999998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.9e-21  Score=164.01  Aligned_cols=173  Identities=22%  Similarity=0.116  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.|++++|.+..+..      ..|+.|++++|.+++..+.  ..+++|++|++++|.++.  +|..+..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence            356677777776654322      3566667777777654332  567777777777777765  666667777777777


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  242 (275)
                      +++|++++..|..+..+++|++|++++|.+.+..+..    +..+++|+.|++++|++++.+.  ..+..+++|+.|+++
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQ  180 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECC
Confidence            7777777544456777777777777777766544333    5667777777777777776642  345667777777777


Q ss_pred             CCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          243 ACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +|+++.  .|..+...++|+.+++++|++..
T Consensus       181 ~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          181 ENSLYT--IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SSCCCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCcCCc--cChhhcccccCCeEEeCCCCccC
Confidence            777764  33355666677777777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=6.7e-21  Score=161.77  Aligned_cols=175  Identities=19%  Similarity=0.115  Sum_probs=151.8

Q ss_pred             EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC-
Q 041140           92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE-  167 (275)
Q Consensus        92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-  167 (275)
                      +.++.+++.+..++.   ..++.|++++|.+++..+..+.++++|++|++++|.+++. .|..+..+++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCC
Confidence            566677776655432   4789999999999988888899999999999999999985 68889999999999999998 


Q ss_pred             CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCC
Q 041140          168 FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH  247 (275)
Q Consensus       168 l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  247 (275)
                      +....|..+..+++|++|++++|.+.+..+..    +.++++|++|++++|.+++.+.  ..+..+++|++|++++|+++
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhH----hhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCccc
Confidence            77555788999999999999999988765655    8889999999999999998853  35788999999999999998


Q ss_pred             CCCCCcccCCCCCcCEEecccCcCcee
Q 041140          248 NSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       248 ~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +. ++..+..+++|++|++++|.+++.
T Consensus       167 ~~-~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          167 SV-PERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             EE-CTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cc-CHHHhcCccccCEEECCCCccccc
Confidence            76 666799999999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=4.5e-21  Score=173.26  Aligned_cols=181  Identities=18%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.|++++|.+..+..      ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence            478899999998876432      3688899999999988888899999999999999999874 455688899999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccc-------------------cccccCCCCCCeeeccCCCCCCC
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLEN-------------------LSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~-------------------l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      +++|++....+..+..+++|++|++++|...+..+...                   ++.+..+++|+.|++++|.+++.
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            99998884444456666666666666632222222110                   01134455555555555555554


Q ss_pred             CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +  +..+..+++|+.|++++|++++. ++..+..+++|+.|+|++|+|++
T Consensus       234 ~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          234 R--PGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             C--GGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             C--cccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCCc
Confidence            2  33566667777777777777665 55567777777777777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=3e-21  Score=156.56  Aligned_cols=177  Identities=21%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             CCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhC
Q 041140           75 NCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS  154 (275)
Q Consensus        75 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~  154 (275)
                      ..|.|.++.|....  ++.+       .......++.|++++|++++..+..+.++++|++|++++|.++.. .+..+..
T Consensus         5 C~C~~~~v~c~~~~--l~~~-------p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~   74 (208)
T 2o6s_A            5 CSCSGTTVECYSQG--RTSV-------PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNK   74 (208)
T ss_dssp             CEEETTEEECCSSC--CSSC-------CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTT
T ss_pred             CEECCCEEEecCCC--ccCC-------CCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCC
Confidence            34789999996421  1111       111123566777777788766566677888888888888888874 4445678


Q ss_pred             CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCC
Q 041140          155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP  234 (275)
Q Consensus       155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  234 (275)
                      +++|++|++++|++++..+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+..++
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~  148 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPD--GVFDRLT  148 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCT
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCH--HHhccCC
Confidence            888888888888888554455788888888888888877554443    6778888888888888887753  3467788


Q ss_pred             CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                      +|++|++++|.+.+.        +++|+.|+++.|+++|.|
T Consensus       149 ~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          149 SLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             TCCEEECCSCCBCCC--------TTTTHHHHHHHHHCTTTB
T ss_pred             CccEEEecCCCeecC--------CCCHHHHHHHHHhCCcee
Confidence            888888888876553        346778888888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=2.2e-21  Score=166.32  Aligned_cols=177  Identities=24%  Similarity=0.298  Sum_probs=152.1

Q ss_pred             CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecC-ccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKIN-PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.|++++|.+..+..     ..|+.|++++|.+++..+ ..+..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEE
Confidence            467778888777654322     468889999999987665 5789999999999999999886 788899999999999


Q ss_pred             CCCCCCCC-CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140          163 LSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL  241 (275)
Q Consensus       163 L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  241 (275)
                      +++|.+.+ .+|..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+..+++|++|++
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L  230 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDY  230 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEEC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccCh--hhccCcccCCEeEC
Confidence            99999986 57888999999999999999988765655    8899999999999999998853  35788999999999


Q ss_pred             cCCcCCCCCCCcccCCCC-CcCEEecccCcCce
Q 041140          242 SACSLHNSLPELPIANFS-SLYTLDLSYNEFDN  273 (275)
Q Consensus       242 ~~n~l~~~~~~~~l~~l~-~L~~L~L~~N~l~g  273 (275)
                      ++|++++. ++..+..++ +|++|++++|++++
T Consensus       231 ~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          231 SLNHIMTS-KKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTSCCCBC-SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCCccc-CHHHHHhhhccCCEEEccCCCeec
Confidence            99999987 666788885 99999999999976

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=8.9e-21  Score=160.28  Aligned_cols=179  Identities=20%  Similarity=0.194  Sum_probs=111.7

Q ss_pred             cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140           90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL  163 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  163 (275)
                      .++.+++++|.+.++..      ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEEC
Confidence            46666666666554322      2456666666666655555566666666666666666653 3445666666666666


Q ss_pred             CCCCCCCCCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCCCc-hhh-------------
Q 041140          164 SRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFL-------------  228 (275)
Q Consensus       164 ~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-~~~-------------  228 (275)
                      ++|.+.+..+..++.+++|++|++++|.+.+. .|..    +.++++|++|++++|.+++.+. ...             
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG----GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchh----hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence            66666644444566666666666666655432 2333    5555666666666665554321 011             


Q ss_pred             -----------hhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          229 -----------VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       229 -----------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                                 ......+|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus       184 ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cCCCcccccCccccCCCcccEEECCCCceeec-CHhHhcccccccEEEccCCccccc
Confidence                       112234789999999999876 776788999999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=171.72  Aligned_cols=191  Identities=20%  Similarity=0.222  Sum_probs=151.5

Q ss_pred             CCCCcccCceEecCC-----------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCE
Q 041140           73 DGNCCTWAGVVCNDS-----------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVY  135 (275)
Q Consensus        73 ~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~  135 (275)
                      ....|.|.++ |+..           ...++.|++++|.+.++..      ..|+.|++++|++++..|..+.++++|++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4556777776 5421           2478999999998876443      36888999999999888888999999999


Q ss_pred             EECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCC-CCCcccccccccccCCCCCCe
Q 041140          136 LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQI-PLSFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       136 L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~l~~L~~  212 (275)
                      |++++|.++.. .+..+..+++|++|++++|++. .+|.  .+..+++|++|++++|. +....+..    +.++++|++
T Consensus       105 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~  178 (353)
T 2z80_A          105 LDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----FAGLTFLEE  178 (353)
T ss_dssp             EECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----TTTCCEEEE
T ss_pred             EECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH----ccCCCCCCE
Confidence            99999999983 3344889999999999999998 5665  78899999999999984 54443444    788899999


Q ss_pred             eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |++++|.+++..  +..+..+++|++|++++|.+... +...+..+++|++|++++|.+++
T Consensus       179 L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          179 LEIDASDLQSYE--PKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEEEETTCCEEC--TTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCBCTT
T ss_pred             EECCCCCcCccC--HHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCcccc
Confidence            999999988873  34678888999999999988654 54445568889999999998875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=4.8e-21  Score=161.81  Aligned_cols=172  Identities=23%  Similarity=0.177  Sum_probs=148.8

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ..++.+++++|.+.+...    ..|+.|++++|.+++..+..+.++++|++|++++|.+++. .+..+..+++|++|+++
T Consensus        63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  141 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLA  141 (272)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECC
Confidence            579999999999887654    3688999999999987777889999999999999999985 55668999999999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|.+++..+..++.+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.++  ..+..+++|+.|++++|
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----FDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred             CCccCccCHHHhccCccCCEEECCCCCcCccCHHH----hcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCC
Confidence            99999666667899999999999999988665544    7889999999999999999853  45788999999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                      .+.+.        +++|+.++++.|.++|.|
T Consensus       216 ~~~~~--------~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          216 PWDCT--------CPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             CBCCC--------TTTTHHHHHHHHHTGGGB
T ss_pred             Ccccc--------CcHHHHHHHHHHhCCCcc
Confidence            88764        447888999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=171.54  Aligned_cols=187  Identities=19%  Similarity=0.230  Sum_probs=155.8

Q ss_pred             cCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCC
Q 041140           79 WAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNF  143 (275)
Q Consensus        79 w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l  143 (275)
                      |..+.|...         ...++.|++++|.+..+..      ..|+.|++++|.+++..|..+.++++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            456667531         2468899999999876533      3788999999999998899999999999999999999


Q ss_pred             CCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140          144 EKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       144 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      +.. .+..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..+..    +..+++|+.|++++|.+++.
T Consensus        93 ~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           93 KLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA----FSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS----STTCTTCCEEEEESCCCSSC
T ss_pred             Ccc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh----ccCCCCCCEEECCCCcCccc
Confidence            984 4446789999999999999999888889999999999999999887665555    88899999999999999988


Q ss_pred             CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +  ...+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+
T Consensus       168 ~--~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          168 P--TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             C--HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCC
T ss_pred             C--hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCcccc
Confidence            5  34678889999999999998876 66677888888888887766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=9.5e-21  Score=170.86  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh--hhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeE
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF--LGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYL  185 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~--~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L  185 (275)
                      |++|++++|.+++..|..+.++++|++|++++|.+++. +|..  +..+++|++|++++|.+.+..|.. ++.+++|++|
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  159 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL  159 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence            33444444444444444444444444444444444432 2222  444555555555555555444443 4555555555


Q ss_pred             EcccCCCC
Q 041140          186 DLSSQIPL  193 (275)
Q Consensus       186 ~Ls~n~~~  193 (275)
                      ++++|.+.
T Consensus       160 ~L~~n~l~  167 (455)
T 3v47_A          160 DLTFNKVK  167 (455)
T ss_dssp             ECTTCCBS
T ss_pred             eCCCCccc
Confidence            55555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=3.5e-20  Score=158.10  Aligned_cols=174  Identities=25%  Similarity=0.228  Sum_probs=153.9

Q ss_pred             CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      ..++.++++++.+..++.   ..++.|++++|.+++..+..+.++++|++|++++|.++.  ++.. ..+++|++|++++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSH   86 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCS
T ss_pred             CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCC
Confidence            568888999988776543   578999999999999888999999999999999999998  5544 7899999999999


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |++. .+|..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+  +..+..+++|+.|++++|+
T Consensus        87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLP--PGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC
T ss_pred             CcCC-cCchhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccC--hhhcccccCCCEEECCCCc
Confidence            9998 78999999999999999999998665555    889999999999999999885  3467789999999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++. ++..+..+++|++|++++|+|+.
T Consensus       160 l~~l-~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          160 LTEL-PAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCcc-CHHHhcCcCCCCEEECCCCcCCc
Confidence            9976 77778899999999999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=167.86  Aligned_cols=181  Identities=20%  Similarity=0.169  Sum_probs=115.2

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.+++++|.+..+..      .+|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceee
Confidence            457788888888765432      3577788888888877777788888888888888888774 444677788888888


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccc-c------------------ccccccCCCCCCeeeccCCCCCCC
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL-E------------------NLSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~-~------------------~l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      +++|.+....+..+..+++|++|++++|...+..+. .                  .++.+..+++|+.|++++|.+++.
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence            888887744444566666666666666432222211 1                  001134445555555555555554


Q ss_pred             CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +  +..+..+++|+.|++++|++++. ++..+..+++|++|+|++|+|++
T Consensus       223 ~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          223 R--PGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             C--TTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCCC
T ss_pred             C--hhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCCc
Confidence            2  23455666666666666666654 55566677777777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=3.6e-21  Score=177.61  Aligned_cols=189  Identities=20%  Similarity=0.257  Sum_probs=135.8

Q ss_pred             CcccCceEecCC-----------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEEC
Q 041140           76 CCTWAGVVCNDS-----------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLEL  138 (275)
Q Consensus        76 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~L  138 (275)
                      .|.|.++ |+..           ..+++.+++++|.+.+..+      ..|++|++++|++++..|..+.++++|++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4788887 7532           1478999999998876432      36888999999999888888999999999999


Q ss_pred             CCCCCCCCCcchhhhCCccCCEEECCCCCCCC-CCcccccCCCCCCeEEcccCCCCCccc-ccccccccCCCCCCeeecc
Q 041140          139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLY-LENLSWLSGLSLLKHLDLT  216 (275)
Q Consensus       139 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~  216 (275)
                      ++|.+++. .|..++.+++|++|++++|.+.+ ..|..++.+++|++|++++|...+..+ ..    +.++++|++|+++
T Consensus        82 s~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~l~~L~~L~L~  156 (549)
T 2z81_A           82 SDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID----FAGLTSLNELEIK  156 (549)
T ss_dssp             TTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEE
T ss_pred             CCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh----hhcccccCeeecc
Confidence            99999985 55669999999999999999986 457788999999999999997444443 33    7788899999999


Q ss_pred             CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +|.+++..  +..++.+++|++|++++|.+... +...+..+++|++|++++|++++
T Consensus       157 ~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          157 ALSLRNYQ--SQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             ETTCCEEC--TTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CCcccccC--hhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccc
Confidence            98888752  23445555555555555444322 22222334455555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1.8e-20  Score=175.05  Aligned_cols=103  Identities=12%  Similarity=0.017  Sum_probs=46.7

Q ss_pred             EEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           91 VLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        91 v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ++.++++++.+..++.      ..|+.|++++|.+++..|..+..+++|++|++++|.+++. .|..++.+++|++|+++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEee
Confidence            3445555554443332      2344455555555544444445555555555555554443 33334444445555554


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLS  194 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~  194 (275)
                      +|.+++..+..++.+++|++|++++|.+.+
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence            444442211223444444444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=5.4e-21  Score=172.45  Aligned_cols=137  Identities=21%  Similarity=0.201  Sum_probs=122.5

Q ss_pred             CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140          131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL  210 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L  210 (275)
                      ++|++|++++|.+++. .|..+..+++|++|++++|++.+..|..++.+++|++|++++|.+.+..+..    +..+++|
T Consensus       275 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L  349 (455)
T 3v47_A          275 SGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM----FENLDKL  349 (455)
T ss_dssp             SCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG----GTTCTTC
T ss_pred             cCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH----hcCcccC
Confidence            6899999999999986 7888999999999999999999878889999999999999999887665555    8899999


Q ss_pred             CeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          211 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       211 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                      ++|++++|.+++.+  +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.+
T Consensus       350 ~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          350 EVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CEEECCCCcccccC--hhhccccccccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCC
Confidence            99999999998873  34778899999999999999986 7777899999999999999998853

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=5.7e-20  Score=159.27  Aligned_cols=190  Identities=20%  Similarity=0.179  Sum_probs=130.7

Q ss_pred             CCCcccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEEC
Q 041140           74 GNCCTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLEL  138 (275)
Q Consensus        74 ~~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~L  138 (275)
                      ...|.|..+.|...         ...++.+++++|.+.++..      ..|+.|++++|.+++..|..+.++++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            34578888888631         2468899999999877543      36888999999999888999999999999999


Q ss_pred             CCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC--cccccccccccCCCCCCeeecc
Q 041140          139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS--FLYLENLSWLSGLSLLKHLDLT  216 (275)
Q Consensus       139 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~--~~~~~~l~~l~~l~~L~~L~L~  216 (275)
                      ++|.++.  +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..    +.++++|++|+++
T Consensus       108 s~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~l~~L~~L~l~  179 (330)
T 1xku_A          108 SKNQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----FQGMKKLSYIRIA  179 (330)
T ss_dssp             CSSCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG----GGGCTTCCEEECC
T ss_pred             CCCcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh----ccCCCCcCEEECC
Confidence            9999886  665543  678888888888876555567777788888887776642  22222    4555555555555


Q ss_pred             CCCCCCCCc-------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          217 GVDLSTASD-------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       217 ~n~l~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +|.++..+.                   .+..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       180 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             SSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc
Confidence            555544321                   123455566666666666666654 4445666666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=2.2e-20  Score=165.50  Aligned_cols=83  Identities=17%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh-hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      |+.|++++|.+.+..|..+.++++|++|++++|.++.  +|.. +..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus        95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A           95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred             cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence            4444455555544444444555555555555555544  3332 344555555555555555444444555555555555


Q ss_pred             ccCCCC
Q 041140          188 SSQIPL  193 (275)
Q Consensus       188 s~n~~~  193 (275)
                      ++|.+.
T Consensus       173 ~~n~l~  178 (390)
T 3o6n_A          173 SSNRLT  178 (390)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.5e-19  Score=150.82  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=135.0

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      ..+.+++++++++ .+|..+.  +.++.|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            3456788888887 5776554  6899999999999996 6778999999999999999999877778999999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+..+++|++|++++|++++. ++..+..+++|++|+++
T Consensus        91 ~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           91 ANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             CCCcccccChhH----hcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECC
Confidence            999988665544    7899999999999999998853  3568899999999999999986 77689999999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|+|++
T Consensus       164 ~N~l~~  169 (251)
T 3m19_A          164 TNQLQS  169 (251)
T ss_dssp             SSCCSC
T ss_pred             CCcCCc
Confidence            999976

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1e-19  Score=157.87  Aligned_cols=190  Identities=19%  Similarity=0.177  Sum_probs=129.3

Q ss_pred             CcccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCC
Q 041140           76 CCTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSN  140 (275)
Q Consensus        76 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~  140 (275)
                      .|.|..+.|...         ...++.+++++|.+..+..      ..|+.|++++|.+++..|..+.++++|++|++++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            478888888642         2468999999998876533      3688899999999988888999999999999999


Q ss_pred             CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC--ccccc-------------------
Q 041140          141 NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS--FLYLE-------------------  199 (275)
Q Consensus       141 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~--~~~~~-------------------  199 (275)
                      |.++.  +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..                   
T Consensus       112 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred             CcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence            99886  665543  677777777777774444456677777777777665531  11100                   


Q ss_pred             ---------------------ccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCC
Q 041140          200 ---------------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF  258 (275)
Q Consensus       200 ---------------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l  258 (275)
                                           ....+..+++|+.|++++|.+++.+  +..+..+++|++|++++|+++.  .|..+..+
T Consensus       188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l  263 (332)
T 2ft3_A          188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNKLSR--VPAGLPDL  263 (332)
T ss_dssp             CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSCCCB--CCTTGGGC
T ss_pred             CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCcCee--cChhhhcC
Confidence                                 0012455566666666666666653  2245566777777777777763  33356777


Q ss_pred             CCcCEEecccCcCce
Q 041140          259 SSLYTLDLSYNEFDN  273 (275)
Q Consensus       259 ~~L~~L~L~~N~l~g  273 (275)
                      ++|++|++++|+|++
T Consensus       264 ~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          264 KLLQVVYLHTNNITK  278 (332)
T ss_dssp             TTCCEEECCSSCCCB
T ss_pred             ccCCEEECCCCCCCc
Confidence            777777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=7.7e-20  Score=149.75  Aligned_cols=132  Identities=23%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             CCEEECCCCCCCCCCcc-hhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140          133 LVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK  211 (275)
Q Consensus       133 L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~  211 (275)
                      +++|++++|.++.. .| ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..    +..+++|+
T Consensus        34 ~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~  108 (220)
T 2v70_A           34 TAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLK  108 (220)
T ss_dssp             CSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCC
T ss_pred             CCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCC
Confidence            34555555555442 11 22444555555555555554333334445555555555555444333322    44455555


Q ss_pred             eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +|++++|.+++.+  +..+..+++|++|+|++|++++. ++..+..+++|++|++++|.++
T Consensus       109 ~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          109 TLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred             EEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence            5555555555442  12344445555555555555543 3444555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=9e-20  Score=149.34  Aligned_cols=134  Identities=21%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140          131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL  210 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L  210 (275)
                      +.++.|++++|.++.. .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....+..    +..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL----FEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred             cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH----ccCCCCC
Confidence            3455555555555542 2234555555555555555555444555555555555555555554332222    4455555


Q ss_pred             CeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          211 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       211 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +.|++++|.+++.+  +..+..+++|++|+|++|++++. ++..+..+++|++|++++|+++
T Consensus       107 ~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          107 QLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcC
Confidence            55555555555542  22444555555555555555554 4444555555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=166.96  Aligned_cols=175  Identities=18%  Similarity=0.167  Sum_probs=148.5

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~  164 (275)
                      .++.+++++|.+.....    ..|+.|++++|.+++.+|..+.++++|++|++++|.+++. .+|..+..+++|++|+++
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            47777888877665442    4788999999999999999999999999999999999861 156779999999999999


Q ss_pred             CCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          165 RAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       165 ~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      +|.+.+.+|.. +..+++|++|++++|.+.+..+..    +.  ++|+.|++++|.++..|.   .+..+++|++|++++
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~--~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~  453 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC----LP--PRIKVLDLHSNKIKSIPK---QVVKLEALQELNVAS  453 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS----CC--TTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCS
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhh----hc--ccCCEEECCCCcccccch---hhhcCCCCCEEECCC
Confidence            99999768875 788999999999999987665543    32  799999999999997754   455899999999999


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      |++++. ++..+..+++|++|++++|++++.
T Consensus       454 N~l~~l-~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          454 NQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcc-CHHHhccCCcccEEECcCCCCccc
Confidence            999964 665689999999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=4.7e-22  Score=171.31  Aligned_cols=161  Identities=22%  Similarity=0.206  Sum_probs=131.7

Q ss_pred             ccccccCCCCcceeecCccc--cCCCCCCEEECCCCCCCCCCcchhhhCC-----ccCCEEECCCCCCCCCCcccccCCC
Q 041140          108 WLEDYKDETSKLIGKINPSL--LDLKHLVYLELSNNNFEKAQLPVFLGSM-----GSLRHIDLSRAEFTGMIPYQLGNLS  180 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l--~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~L~L~~n~l~~~lp~~l~~l~  180 (275)
                      .|+.|++++|++++.+|..+  ..+++|++|++++|.+++  +|..+..+     ++|++|++++|++.+..|..++.++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            57788889999999899876  889999999999999988  57777776     8999999999999977778999999


Q ss_pred             CCCeEEcccCCCCCcc--cccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140          181 NLQYLDLSSQIPLSFL--YLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSACSLHNSLPELPIAN  257 (275)
Q Consensus       181 ~L~~L~Ls~n~~~~~~--~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  257 (275)
                      +|++|++++|.+.+..  +...  .+..+++|++|++++|.+++.+..+ ..+..+++|++|++++|++++..+...+..
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISAL--CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHS--CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHH--HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            9999999999875532  1120  0378899999999999999764333 234578999999999999998743346677


Q ss_pred             CCCcCEEecccCcCc
Q 041140          258 FSSLYTLDLSYNEFD  272 (275)
Q Consensus       258 l~~L~~L~L~~N~l~  272 (275)
                      +++|++|++++|.|+
T Consensus       252 l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCS
T ss_pred             cCCCCEEECCCCccC
Confidence            899999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=3.7e-20  Score=172.98  Aligned_cols=159  Identities=19%  Similarity=0.134  Sum_probs=107.7

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      .+++.|++++|++++..+..|.++++|++|++++|.|+.. .|..|.++++|++|+|++|++++..+..+.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            3566777777777766666777778888888888877763 344677777788888888777744445677777888888


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCC----cC
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS----LY  262 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~----L~  262 (275)
                      +++|.+.+..+..    ++++++|++|++++|.+++.+ .+..++.+++|++|++++|++++. ++..+..+.+    ..
T Consensus       131 Ls~N~l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          131 AVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             CTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCC
T ss_pred             CCCCcCCCCChhh----hhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCcccccc-ccccccchhhhhhhhh
Confidence            8777776554444    677777888888877777653 234566677777888877777765 4444443332    23


Q ss_pred             EEecccCcCc
Q 041140          263 TLDLSYNEFD  272 (275)
Q Consensus       263 ~L~L~~N~l~  272 (275)
                      .++++.|.++
T Consensus       205 ~~~ls~n~l~  214 (635)
T 4g8a_A          205 SLDLSLNPMN  214 (635)
T ss_dssp             EEECTTCCCC
T ss_pred             hhhcccCccc
Confidence            5666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=4.4e-20  Score=148.53  Aligned_cols=151  Identities=16%  Similarity=0.215  Sum_probs=124.9

Q ss_pred             cEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140           90 HVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT  169 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~  169 (275)
                      +++.++++++                  ++. .+| .+..+++|++|++++|.++.  + +.+..+++|++|++++|.++
T Consensus        45 ~L~~L~l~~n------------------~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           45 SLTYITLANI------------------NVT-DLT-GIEYAHNIKDLTINNIHATN--Y-NPISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             TCCEEEEESS------------------CCS-CCT-TGGGCTTCSEEEEESCCCSC--C-GGGTTCTTCCEEEEECTTCB
T ss_pred             CccEEeccCC------------------Ccc-ChH-HHhcCCCCCEEEccCCCCCc--c-hhhhcCCCCCEEEeECCccC
Confidence            4667777766                  665 455 58889999999999997765  3 47889999999999999999


Q ss_pred             CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC-CCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      +..|..++.+++|++|++++|.+.+..+..    +..+++|++|++++|. ++..+    .+..+++|++|++++|++++
T Consensus       102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             GGGSCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCC
T ss_pred             cccChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcC
Confidence            878889999999999999999887655544    8899999999999998 76664    56788999999999999987


Q ss_pred             CCCCcccCCCCCcCEEecccCcCcee
Q 041140          249 SLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      . +  .+..+++|++|++++|++.+.
T Consensus       174 ~-~--~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          174 Y-R--GIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             C-T--TGGGCSSCCEEEECBC-----
T ss_pred             h-H--HhccCCCCCEEEeeCcccCCc
Confidence            4 3  688999999999999998763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=7.5e-20  Score=154.59  Aligned_cols=159  Identities=19%  Similarity=0.140  Sum_probs=131.3

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      ..++.|++++|++++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            4789999999999988887899999999999999999985 556789999999999999999977778899999999999


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC----
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY----  262 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~----  262 (275)
                      +++|.+.+..+..    +.++++|++|++++|.+++.. ++..+..+++|++|++++|++++. ++..+..+++|+    
T Consensus       107 l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          107 AVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             CTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCE
T ss_pred             CCCCCccccCchh----cccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhccccce
Confidence            9999887665545    889999999999999998843 234778889999999999999875 444444444333    


Q ss_pred             EEecccCcCc
Q 041140          263 TLDLSYNEFD  272 (275)
Q Consensus       263 ~L~L~~N~l~  272 (275)
                      .|++++|.++
T Consensus       181 ~L~ls~n~l~  190 (276)
T 2z62_A          181 SLDLSLNPMN  190 (276)
T ss_dssp             EEECCSSCCC
T ss_pred             eeecCCCccc
Confidence            5555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=2.5e-20  Score=160.48  Aligned_cols=177  Identities=21%  Similarity=0.138  Sum_probs=137.9

Q ss_pred             CcEEEEEcCCCCCCCC--------CccccccccCCCCcceeecCccccCC-----CCCCEEECCCCCCCCCCcchhhhCC
Q 041140           89 GHVLELRLGNPFLHDD--------EPFWLEDYKDETSKLIGKINPSLLDL-----KHLVYLELSNNNFEKAQLPVFLGSM  155 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l--------~~~~L~~l~l~~n~l~~~lp~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~~~~l  155 (275)
                      .+++.+++++|.+.+.        ....|+.|++++|++++. |..+..+     ++|++|++++|.+++. .|..++.+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccC
Confidence            5688999999887642        123688899999999887 7777766     8999999999999886 66889999


Q ss_pred             ccCCEEECCCCCCCCC--Ccccc--cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140          156 GSLRHIDLSRAEFTGM--IPYQL--GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN  231 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~--lp~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  231 (275)
                      ++|++|++++|++.+.  +|..+  +.+++|++|++++|.+.+.... ....+.++++|++|++++|.+++.++ ...+.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~  250 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-CSALAAARVQLQGLDLSHNSLRDAAG-APSCD  250 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-HHHHHHTTCCCSEEECTTSCCCSSCC-CSCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-HHHHHhcCCCCCEEECCCCcCCcccc-hhhhh
Confidence            9999999999998765  34455  7899999999999988632111 00114578899999999999998642 12455


Q ss_pred             CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      .+++|++|++++|+++.  .|..+.  ++|++|++++|+|++
T Consensus       251 ~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CCTTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSCCCS
T ss_pred             hcCCCCEEECCCCccCh--hhhhcc--CCceEEECCCCCCCC
Confidence            67899999999999984  343444  889999999999986

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2e-19  Score=162.00  Aligned_cols=155  Identities=19%  Similarity=0.171  Sum_probs=111.8

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcc-hhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      |+.|++++|.+....+..+.++++|++|++++|+.... ++ ..+..+++|++|++++|.++ .+| .+..+++|++|++
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L  214 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL  214 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence            44444445444443333444455555555554222221 22 24666777777777777776 455 3677888888888


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+..+..    +.++++|+.|++++|.+++.+  +..+..+++|+.|+|++|++++. ++..+..+++|+.|+++
T Consensus       215 s~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          215 SGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLH  287 (440)
T ss_dssp             TTSCCCEECTTT----TTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTSCCCCC-CTTTTSSCTTCCEEECC
T ss_pred             CCCccCccChhh----hccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCCCCCcc-ChhHhccccCCCEEEcC
Confidence            888877665555    889999999999999999884  34678899999999999999986 77788999999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|++..
T Consensus       288 ~Np~~C  293 (440)
T 3zyj_A          288 HNPWNC  293 (440)
T ss_dssp             SSCEEC
T ss_pred             CCCccC
Confidence            999753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=4.9e-19  Score=152.22  Aligned_cols=165  Identities=23%  Similarity=0.345  Sum_probs=130.8

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      .+++.+++++|.+.++..    ..|+.|++++|.+.+.  +.+..+++|++|++++|.+++  ++. +..+++|++|+++
T Consensus        63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECC
Confidence            568888888888777654    3677888888888763  358888888888888888887  444 7888888999998


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|.+++ ++. ++.+++|++|++++|.+.+..+      +..+++|+.|++++|.+++.+.    +..+++|++|++++|
T Consensus       138 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          138 LNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNN  205 (308)
T ss_dssp             SSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTS
T ss_pred             CCccCc-Ccc-ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCC
Confidence            888884 443 7788889999998887764322      6788889999999999888752    567888999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++. +  .+..+++|+.|++++|++++
T Consensus       206 ~l~~~-~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          206 QISDV-S--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCBC-G--GGTTCTTCCEEEEEEEEEEC
T ss_pred             ccCcc-c--cccCCCCCCEEEccCCeeec
Confidence            99875 4  37888999999999998876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=3.6e-20  Score=153.36  Aligned_cols=174  Identities=16%  Similarity=0.132  Sum_probs=143.7

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCc-ceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSK-LIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRH  160 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~-l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~  160 (275)
                      ..++.+++++|.+..+..      .+|+.|++++|. +++..+..+.++++|++|++++ |.++.. .+..+..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCE
Confidence            478999999998876543      368889999997 7765566889999999999998 999884 4467889999999


Q ss_pred             EECCCCCCCCCCcccccCCCCCC---eEEcccC-CCCCcccccccccccCCCCCC-eeeccCCCCCCCCchhhhhCCCCC
Q 041140          161 IDLSRAEFTGMIPYQLGNLSNLQ---YLDLSSQ-IPLSFLYLENLSWLSGLSLLK-HLDLTGVDLSTASDWFLVTNMLPS  235 (275)
Q Consensus       161 L~L~~n~l~~~lp~~l~~l~~L~---~L~Ls~n-~~~~~~~~~~l~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~l~~  235 (275)
                      |++++|++++ +|. +..+++|+   +|++++| .+.+..+..    +.++++|+ .|++++|.++..+.  ..+.. ++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~----~~~l~~L~~~L~l~~n~l~~i~~--~~~~~-~~  180 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA----FQGLCNETLTLKLYNNGFTSVQG--YAFNG-TK  180 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT----TTTTBSSEEEEECCSCCCCEECT--TTTTT-CE
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc----ccchhcceeEEEcCCCCCcccCH--hhcCC-CC
Confidence            9999999985 776 88888888   9999999 777555444    78899999 99999999986653  23333 79


Q ss_pred             CcEEeccCCc-CCCCCCCcccCCC-CCcCEEecccCcCce
Q 041140          236 LQVLKLSACS-LHNSLPELPIANF-SSLYTLDLSYNEFDN  273 (275)
Q Consensus       236 L~~L~L~~n~-l~~~~~~~~l~~l-~~L~~L~L~~N~l~g  273 (275)
                      |+.|++++|+ +++. ++..+..+ ++|++|++++|++++
T Consensus       181 L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             EEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCcccc
Confidence            9999999995 8865 77788899 999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=9.2e-20  Score=160.11  Aligned_cols=173  Identities=20%  Similarity=0.159  Sum_probs=143.2

Q ss_pred             EEEcCCCCCCCCCc---cccccccCCCCcceeecCcccc-CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140           93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF  168 (275)
Q Consensus        93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l  168 (275)
                      .++++++.+..++.   ..++.|++++|++++..+..+. ++++|++|++++|.++.. .+..+..+++|++|++++|++
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC
Confidence            35555555554432   3578899999999988887787 999999999999999985 556799999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh---CCCCCCcEEeccCCc
Q 041140          169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT---NMLPSLQVLKLSACS  245 (275)
Q Consensus       169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---~~l~~L~~L~L~~n~  245 (275)
                      .+..+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+   ..+++|+.|+|++|+
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNA----FEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCCEEECCSSC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHH----hCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCCEEECCCCC
Confidence            9666667899999999999999998665655    8899999999999999999864  233   578999999999999


Q ss_pred             CCCCCCCcccCCCCC--cCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSS--LYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~--L~~L~L~~N~l~g  273 (275)
                      +++. ++..+..++.  ++.|++++|+++.
T Consensus       175 l~~l-~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKL-PLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCC-CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCcc-CHHHhhhccHhhcceEEecCCCccC
Confidence            9976 6667788887  4899999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=1.6e-19  Score=168.47  Aligned_cols=178  Identities=18%  Similarity=0.131  Sum_probs=126.0

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      .+++.+++++|.+.++..      ..|+.|++++|.+++..|..+.++++|++|++++|.+++. .|..++++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence            567888888887765433      3577778888888877777788888888888888888775 577788888888888


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCC-cccccccccccCCCCCCeeeccCCCCCCCCc-hhhhhCCCCC-CcEE
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS-FLYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLPS-LQVL  239 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~-L~~L  239 (275)
                      +++|.+.+..+..++.+++|++|++++|.+.+ ..|..    ++++++|++|++++|.+++.+. ....+.+++. +.++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG----GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHh----HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            88888876555677888888888888887764 33444    7778888888888888777631 1222222322 4578


Q ss_pred             eccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       240 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++|.+++. ++..+... +|+.|++++|.++|
T Consensus       187 ~l~~n~l~~~-~~~~~~~~-~L~~L~L~~n~~~~  218 (606)
T 3vq2_A          187 DMSLNPIDFI-QDQAFQGI-KLHELTLRGNFNSS  218 (606)
T ss_dssp             ECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSCH
T ss_pred             eccCCCccee-CcccccCc-eeeeeeccCCccch
Confidence            8888888765 55444443 78888888887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=162.53  Aligned_cols=174  Identities=21%  Similarity=0.175  Sum_probs=152.2

Q ss_pred             EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140           92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF  168 (275)
Q Consensus        92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l  168 (275)
                      ..++.+++.+..++.   ..++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|++
T Consensus        14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC
Confidence            357778777665443   4789999999999998889999999999999999999986 688999999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      .+..+..+..+++|++|++++|.+.+..+..    +.++++|++|++++|.+++..  +..+..+++|++|++++|.+++
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSS
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCcCcc
Confidence            9544456899999999999999988766655    889999999999999998874  3467889999999999999988


Q ss_pred             CCCCcccCCCCCcCEEecccCcCce
Q 041140          249 SLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      . ++..+..+++|+.|++++|.+++
T Consensus       167 ~-~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          167 I-PTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             C-CHHHHTTCTTCCEEEEESCCCCE
T ss_pred             c-ChhHhcccCCCcEEeCCCCcCcE
Confidence            6 77779999999999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=2.9e-19  Score=168.97  Aligned_cols=167  Identities=17%  Similarity=0.048  Sum_probs=138.9

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      .+++.|++++|.+..+..      ..|+.|++++|.+++..|..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEE
Confidence            579999999999887665      3688899999999998898999999999999999999983 334699999999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  242 (275)
                      +++|.+.+..|..++.+++|++|++++|.+.+..+..    +.++++|++|++++|.+++.+........+++|++|+++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            9999998766678999999999999999888766655    788999999999999999885322223356899999999


Q ss_pred             CCcCCCCCCCcccCCCCCc
Q 041140          243 ACSLHNSLPELPIANFSSL  261 (275)
Q Consensus       243 ~n~l~~~~~~~~l~~l~~L  261 (275)
                      +|.+++. ++..+..+++|
T Consensus       180 ~n~l~~~-~~~~~~~l~~L  197 (680)
T 1ziw_A          180 SNQIKEF-SPGCFHAIGRL  197 (680)
T ss_dssp             TCCCCCB-CTTGGGGSSEE
T ss_pred             CCccccc-Chhhhhhhhhh
Confidence            9999887 55556554433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-18  Score=141.23  Aligned_cols=146  Identities=23%  Similarity=0.278  Sum_probs=122.8

Q ss_pred             cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140          118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY  197 (275)
Q Consensus       118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~  197 (275)
                      +++ .+|..+  .++|++|++++|.++.. .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+
T Consensus        18 ~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           18 GRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             Ccc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence            554 345433  46899999999999985 55567899999999999999996555567899999999999999886554


Q ss_pred             ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ..    +..+++|++|++++|.+++.+.  ..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++.
T Consensus        94 ~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           94 GV----FDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             TT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             hH----hcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecC
Confidence            44    7889999999999999998853  3578899999999999999986 776789999999999999998874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=1.2e-19  Score=169.27  Aligned_cols=158  Identities=17%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .++.|++++|.+++..|..+.++++|++|++++|.++.. .|..|.++++|++|++++|++.+..|..++.+++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            455556666666665566666666666666666666654 4556666666666666666666555666666666666666


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC--EEe
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY--TLD  265 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~  265 (275)
                      ++|.+.+..+..    +.++++|++|++++|.+++.+. + .+..+++|++|++++|.+++. ++..++.+++|+  .|+
T Consensus       113 ~~n~i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          113 IQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLN  185 (606)
T ss_dssp             TTSCCSCGGGSC----CTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEE
T ss_pred             cccCcccCCcch----hccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEe
Confidence            666665443333    5666666666666666665421 1 222356666666666666654 444566666666  666


Q ss_pred             cccCcCce
Q 041140          266 LSYNEFDN  273 (275)
Q Consensus       266 L~~N~l~g  273 (275)
                      +++|.+++
T Consensus       186 l~~n~l~~  193 (606)
T 3t6q_A          186 LNGNDIAG  193 (606)
T ss_dssp             CTTCCCCE
T ss_pred             cCCCccCc
Confidence            66666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=5.4e-19  Score=150.78  Aligned_cols=165  Identities=24%  Similarity=0.227  Sum_probs=142.2

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      .+++.++++++.+.+++.    .+|+.|++++|++++..+  +.++++|++|++++|.+++  +|. +..+++|++|+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECC
Confidence            468899999998877654    368889999999987555  8999999999999999987  554 8999999999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|++.+ + +.+..+++|++|++++|.+.+.  .    .+..+++|++|++++|.+++.++    +..+++|+.|++++|
T Consensus       121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCC
Confidence            999985 4 5688999999999999988754  2    28899999999999999999852    778999999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      .+++.  + .+..+++|+.|++++|+++.
T Consensus       189 ~i~~l--~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HISDL--R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCBC--G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCC--h-hhccCCCCCEEECcCCcccC
Confidence            99874  3 48999999999999998764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=3.6e-19  Score=154.22  Aligned_cols=153  Identities=20%  Similarity=0.202  Sum_probs=79.8

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCC--CCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEK--AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~--~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      |+.|++++|.+.+..+..+.++++|++|++++|.++.  . .+..+..+++|++|++++|.+. .+|..+.  ++|++|+
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~  198 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH  198 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB-CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc-ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence            3444444444443333334445555555555555432  1 3334444555555555544444 2333221  4444444


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL  266 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  266 (275)
                      +++|.+.+..+..    +..+++|+.|++++|.+++.+  +..+..+++|++|++++|+++.  .|..+..+++|++|++
T Consensus       199 l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          199 LDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYL  270 (330)
T ss_dssp             CTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEEC
T ss_pred             CCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEEC
Confidence            4444444332322    566667777777777766653  1244556667777777776663  3335666667777777


Q ss_pred             ccCcCce
Q 041140          267 SYNEFDN  273 (275)
Q Consensus       267 ~~N~l~g  273 (275)
                      ++|+|++
T Consensus       271 ~~N~i~~  277 (330)
T 1xku_A          271 HNNNISA  277 (330)
T ss_dssp             CSSCCCC
T ss_pred             CCCcCCc
Confidence            7776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=9.1e-19  Score=158.14  Aligned_cols=161  Identities=19%  Similarity=0.107  Sum_probs=129.3

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      .+++.|++++|++++..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            5789999999999999899999999999999999999986 668899999999999999999965556789999999999


Q ss_pred             cccCCCCCccccc----------------cc-----ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          187 LSSQIPLSFLYLE----------------NL-----SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       187 Ls~n~~~~~~~~~----------------~l-----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      +++|.+....+..                .+     ..+..+++|++|++++|.+++.+    .+..+++|+.|++++|.
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCc
Confidence            9999887443322                00     12445667777777777777664    35667788888888888


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++. ++..+..+++|++|++++|++++
T Consensus       230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          230 FPEI-RPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CSEE-CGGGGTTCTTCCEEECTTSCCCE
T ss_pred             Cccc-CcccccCccCCCEEEeCCCcCce
Confidence            8776 66678888888888888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=3.9e-19  Score=164.75  Aligned_cols=175  Identities=19%  Similarity=0.178  Sum_probs=148.6

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~  164 (275)
                      .++.+++++|.+.....    ..|+.|++++|.+++.+|..+.++++|++|++++|.+++. .+|..+..+++|++|+++
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            47888888888766442    4788999999999999999999999999999999999973 134678999999999999


Q ss_pred             CCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          165 RAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       165 ~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      +|++.+.+|.. +..+++|++|++++|.+.+..+..    +.  ++|+.|++++|+++..|.   .+..+++|++|++++
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~--~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~  482 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC----LP--PKVKVLDLHNNRIMSIPK---DVTHLQALQELNVAS  482 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS----CC--TTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCS
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh----hc--CcCCEEECCCCcCcccCh---hhcCCCCCCEEECCC
Confidence            99999867764 788999999999999987655443    22  699999999999997764   555899999999999


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      |++++. ++..+..+++|++|++++|++++.
T Consensus       483 N~l~~l-~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          483 NQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SCCCCC-CTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCC-CHHHHhcCCCCCEEEecCCCcCCC
Confidence            999964 665589999999999999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=5.3e-19  Score=151.99  Aligned_cols=166  Identities=22%  Similarity=0.266  Sum_probs=142.2

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      .+++.++++++.+..++.    ..|+.|++++|.+.+..+  +..+++|++|++++|.+++  ++ .+..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECT
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECC
Confidence            468999999998877654    368889999999986544  8999999999999999987  54 68899999999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|++++ ++. +..+++|++|++++|.+.+..+      +..+++|++|++++|.+++.+.    +..+++|+.|++++|
T Consensus       116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          116 STQITD-VTP-LAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDN  183 (308)
T ss_dssp             TSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             CCCCCC-chh-hcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCC
Confidence            999985 554 8999999999999998875432      6789999999999999998752    778999999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ++++. ++  +..+++|++|++++|++++.
T Consensus       184 ~l~~~-~~--l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          184 KISDI-SP--LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             CCCCC-GG--GGGCTTCCEEECTTSCCCBC
T ss_pred             ccCcC-hh--hcCCCCCCEEEccCCccCcc
Confidence            99875 43  88999999999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=5.4e-19  Score=164.94  Aligned_cols=180  Identities=25%  Similarity=0.232  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140           90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL  163 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  163 (275)
                      .++.+++++|.+.++..      ..|+.|++++|.++ .+|..+.++++|++|++++|.++.. .|..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEEC
Confidence            57788888877766543      35677777777776 6777777777788888887777764 5566777777777777


Q ss_pred             CCCCCCCCCccc-ccCCCCCCeEEcccCCCCCcc--ccc--------------------ccccccCCCCCCeeeccCCCC
Q 041140          164 SRAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFL--YLE--------------------NLSWLSGLSLLKHLDLTGVDL  220 (275)
Q Consensus       164 ~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~--~~~--------------------~l~~l~~l~~L~~L~L~~n~l  220 (275)
                      ++|.+.+.+|.. +..+++|++|++++|.+.+..  +..                    ....+..+++|++|++++|.+
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            777776655543 566666666666666554332  111                    001144555556666665555


Q ss_pred             CCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       221 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++... ...+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++++
T Consensus       413 ~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          413 KVKDA-QSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             ECCTT-CCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCccc-chhhhCcccCCEEECCCCccCCc-CHHHHhCCCCCCEEECCCCCCCc
Confidence            54421 12355667777777777777665 55567777777777777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=2e-20  Score=176.03  Aligned_cols=173  Identities=15%  Similarity=0.128  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCCCCCC------------------CC-------ccccccccCCCCcceeecCccccCCCCCCEEECCCCC-
Q 041140           89 GHVLELRLGNPFLHD------------------DE-------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-  142 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~------------------l~-------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-  142 (275)
                      ..++.+++++|.+.+                  ++       -..|+.|++++|.+.+.+|..++++++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            578999999999887                  32       2367889999999999999999999999999999998 


Q ss_pred             CCC-CCcchhhhCC------ccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCCCCCcccccccccccCCCCCCee
Q 041140          143 FEK-AQLPVFLGSM------GSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHL  213 (275)
Q Consensus       143 l~~-~~~p~~~~~l------~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L  213 (275)
                      +++ . +|..++.+      ++|++|++++|+++ .+|.  .++.+++|++|++++|.+.|..| .    +..+++|++|
T Consensus       286 l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L  358 (636)
T 4eco_A          286 ISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASL  358 (636)
T ss_dssp             SCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEE
T ss_pred             Ccccc-chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEE
Confidence            887 6 89888887      89999999999999 8998  89999999999999998876665 3    4555555555


Q ss_pred             eccCCCCCCCCchhhhhCCCCC-CcEEeccCCcCCCCCCCcccCCCC--CcCEEecccCcCce
Q 041140          214 DLTGVDLSTASDWFLVTNMLPS-LQVLKLSACSLHNSLPELPIANFS--SLYTLDLSYNEFDN  273 (275)
Q Consensus       214 ~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~N~l~g  273 (275)
                      ++++|.++..|.   .+..+++ |++|++++|.++.  .|..+..++  +|++|++++|.++|
T Consensus       359 ~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          359 NLAYNQITEIPA---NFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             ECCSSEEEECCT---TSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             ECCCCccccccH---hhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCC
Confidence            555555553322   3344444 5555555555442  222333322  44444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=3.5e-21  Score=183.49  Aligned_cols=215  Identities=19%  Similarity=0.088  Sum_probs=120.4

Q ss_pred             CCHHHHHHHHHHHhcCCC-CCCCCCCC--CCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCccee-
Q 041140           46 CIQSEREALLRFKQDLKD-PANRLALW--SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIG-  121 (275)
Q Consensus        46 ~~~~~~~~L~~~~~~~~~-~~~~~~~W--~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~-  121 (275)
                      ....+++++.+++.+... .+.....|  .....+.|.++.+..  ++++.+++.++.+.......++.++++.|.+.+ 
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~  206 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED  206 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence            345567788888877622 23334457  334567788887764  789999998888766544444445555444433 


Q ss_pred             --------ecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140          122 --------KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       122 --------~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                              ..|..+..++.|+.|+|++|.+..  +|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+.
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence                    346678889999999999999985  8888889999999999999999 89999999999999999999987


Q ss_pred             CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCC-CcCEEecccCcCc
Q 041140          194 SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS-SLYTLDLSYNEFD  272 (275)
Q Consensus       194 ~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~L~~N~l~  272 (275)
                       .+|..    ++++++|++|+|++|.++..|.   .++.+++|+.|+|++|.+++. ++..+..+. .+..+++++|.++
T Consensus       284 -~lp~~----~~~l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          284 -SLPAE----LGSCFQLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEKQ-FLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             -SCCSS----GGGGTTCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCSH-HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             -ccChh----hcCCCCCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCCC-ChHHHhhcchhhhHHhhccCccc
Confidence             55665    8899999999999999987754   588899999999999999886 444443221 1122445555554


Q ss_pred             ee
Q 041140          273 NT  274 (275)
Q Consensus       273 g~  274 (275)
                      |.
T Consensus       355 ~~  356 (727)
T 4b8c_D          355 IP  356 (727)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=5.5e-19  Score=156.45  Aligned_cols=178  Identities=15%  Similarity=0.076  Sum_probs=122.3

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.++++++.+..++.      ..|+.|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEE
Confidence            456777888777666544      3677888888888877777788888888888888888875 566678888888888


Q ss_pred             CCCCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc----------------
Q 041140          163 LSRAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD----------------  225 (275)
Q Consensus       163 L~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~----------------  225 (275)
                      +++|.+. .+|.. ++.+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+.                
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhh----ccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            8888887 45554 578888888888888776554443    5555666666666655543210                


Q ss_pred             -----------------------------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140          226 -----------------------------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL  264 (275)
Q Consensus       226 -----------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  264 (275)
                                                               ....+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERL  277 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEE
Confidence                                                     001234456777777777777665 55566667777777


Q ss_pred             ecccCcCce
Q 041140          265 DLSYNEFDN  273 (275)
Q Consensus       265 ~L~~N~l~g  273 (275)
                      ++++|++++
T Consensus       278 ~L~~n~l~~  286 (390)
T 3o6n_A          278 YISNNRLVA  286 (390)
T ss_dssp             ECCSSCCCE
T ss_pred             ECCCCcCcc
Confidence            777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=175.31  Aligned_cols=189  Identities=19%  Similarity=0.147  Sum_probs=154.7

Q ss_pred             cccCceEecCCCCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeec-CccccCCCCCCEEECCCCCCCCCCcc
Q 041140           77 CTWAGVVCNDSTGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKI-NPSLLDLKHLVYLELSNNNFEKAQLP  149 (275)
Q Consensus        77 c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~p  149 (275)
                      |.|..|.+  ...+++.|++++|.+..+..      ..|+.|++++|...+.+ |..+.++++|++|++++|.+++. .|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p   90 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HP   90 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CH
Confidence            45666666  35789999999999876533      36888999999888888 66899999999999999999986 78


Q ss_pred             hhhhCCccCCEEECCCCCCCCCCccc--ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchh
Q 041140          150 VFLGSMGSLRHIDLSRAEFTGMIPYQ--LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWF  227 (275)
Q Consensus       150 ~~~~~l~~L~~L~L~~n~l~~~lp~~--l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~  227 (275)
                      ..+..+++|++|++++|.+++.+|..  ++++++|++|++++|.+.+..+..   .++++++|++|++++|.+++..  +
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~L~~L~~L~Ls~N~i~~~~--~  165 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP---SFGKLNSLKSIDFSSNQIFLVC--E  165 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG---GGGTCSSCCEEEEESSCCCCCC--S
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch---hHhhCCCCCEEECCCCcCCeeC--H
Confidence            89999999999999999999877765  899999999999999887654422   2889999999999999998873  2


Q ss_pred             hhhCCC--CCCcEEeccCCcCCCCCCCcccCCCCC------cCEEecccCcCcee
Q 041140          228 LVTNML--PSLQVLKLSACSLHNSLPELPIANFSS------LYTLDLSYNEFDNT  274 (275)
Q Consensus       228 ~~~~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~------L~~L~L~~N~l~g~  274 (275)
                      ..+..+  ++|+.|++++|.+.+. .+..+..+++      |+.|++++|.+++.
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  219 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVD  219 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCC-CCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred             HHcccccCCccceEECCCCccccc-cccchhhcCCccccCceeEEecCCCcCchh
Confidence            233334  7899999999999887 4445666655      99999999987653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=4.8e-19  Score=165.43  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=89.4

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHI  161 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L  161 (275)
                      ..++.|++++|.+.++..      ..|+.|++++|.+++..|..++++++|++|++++|.++.  +|. .+..+++|++|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEE
Confidence            468899999998876543      368889999999999888888999999999999999997  554 46899999999


Q ss_pred             ECCCCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140          162 DLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS  194 (275)
Q Consensus       162 ~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~  194 (275)
                      ++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            999999998778889999999999999997764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=1.2e-19  Score=169.27  Aligned_cols=157  Identities=23%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             ccccccCCCCcceeecC-ccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCC-CcccccCCCCCCeE
Q 041140          108 WLEDYKDETSKLIGKIN-PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYL  185 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L  185 (275)
                      .|+.|++++|.+.+..| ..+.++++|++|++++|.+++. .|..+..+++|++|++++|.+.+. +|..++.+++|++|
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            34445555555555544 3455555666666666655554 555555666666666666666542 45556666666666


Q ss_pred             EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCC-CcCEE
Q 041140          186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS-SLYTL  264 (275)
Q Consensus       186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L  264 (275)
                      ++++|.+.+..+..    +..+++|++|++++|.+++..  +..+..+++|+.|++++|+++.. ++ .+..++ +|++|
T Consensus       479 ~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~-p~-~~~~l~~~L~~l  550 (606)
T 3vq2_A          479 DLSKCQLEQISWGV----FDTLHRLQLLNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIETS-KG-ILQHFPKSLAFF  550 (606)
T ss_dssp             ECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCEE--GGGTTTCTTCCEEECTTSCCCCE-ES-CGGGSCTTCCEE
T ss_pred             ECCCCcCCccChhh----hcccccCCEEECCCCcCCCcC--HHHccCCCcCCEEECCCCcCccc-CH-hHhhhcccCcEE
Confidence            66666555444443    566666666666666666652  33556666666666666666642 33 355555 46677


Q ss_pred             ecccCcCce
Q 041140          265 DLSYNEFDN  273 (275)
Q Consensus       265 ~L~~N~l~g  273 (275)
                      ++++|++++
T Consensus       551 ~l~~N~~~c  559 (606)
T 3vq2_A          551 NLTNNSVAC  559 (606)
T ss_dssp             ECCSCCCCC
T ss_pred             EccCCCccc
Confidence            777666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=155.94  Aligned_cols=181  Identities=18%  Similarity=0.169  Sum_probs=150.9

Q ss_pred             ceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCcc
Q 041140           81 GVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGS  157 (275)
Q Consensus        81 gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~  157 (275)
                      ...|..  ..+  .+.+++.+..++.   ..++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++
T Consensus        27 ~~~C~~--~~~--c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  101 (353)
T 2z80_A           27 SLSCDR--NGI--CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGS  101 (353)
T ss_dssp             CCEECT--TSE--EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred             CCCCCC--CeE--eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCC
Confidence            455643  233  7889888777654   4799999999999987777899999999999999999985 5678999999


Q ss_pred             CCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc-ccccccccCCCCCCeeeccCCC-CCCCCchhhhhCCCCC
Q 041140          158 LRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY-LENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPS  235 (275)
Q Consensus       158 L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~  235 (275)
                      |++|++++|++++..+..++.+++|++|++++|.+.+... ..    +.++++|++|++++|. +...+  +..+..+++
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~  175 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL----FSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTF  175 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS----CTTCTTCCEEEEEESSSCCEEC--TTTTTTCCE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh----hccCCCCcEEECCCCccccccC--HHHccCCCC
Confidence            9999999999995444458999999999999998875433 23    7889999999999994 66553  346788999


Q ss_pred             CcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       236 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |++|++++|.+++. .+..+..+++|++|++++|.++.
T Consensus       176 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          176 LEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             EEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCEEECCCCCcCcc-CHHHHhccccCCeecCCCCcccc
Confidence            99999999999987 67789999999999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=9.3e-20  Score=166.25  Aligned_cols=130  Identities=18%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc-CCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140          131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL  209 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~  209 (275)
                      ++|++|++++|.+++. .|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+.+..+      ...+++
T Consensus       120 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~~l~~  192 (487)
T 3oja_A          120 QGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG------QVVFAK  192 (487)
T ss_dssp             SSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC------CCCCTT
T ss_pred             CCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc------cccCCC
Confidence            4445555555555553 344555566666666666666655555554 45666666666665543311      334666


Q ss_pred             CCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       210 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      |+.|++++|.+++.++   .+..+++|+.|++++|.+++. + ..+..+++|+.|++++|.++
T Consensus       193 L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~l-p-~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          193 LKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLI-E-KALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEE-C-TTCCCCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCccc-c-hhhccCCCCCEEEcCCCCCc
Confidence            7777777777766543   355666777777777777653 3 34666777777777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=5.4e-19  Score=153.26  Aligned_cols=124  Identities=19%  Similarity=0.157  Sum_probs=103.0

Q ss_pred             cEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           90 HVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      +++.++++++.+..++.   ..++.|++++|.+.+..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCC
Confidence            46778999988766543   4789999999999988888999999999999999999986 6889999999999999999


Q ss_pred             CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCC
Q 041140          167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLS  221 (275)
Q Consensus       167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~  221 (275)
                      .+. .+|..+.  ++|++|++++|.+.+..+..    +.++++|+.|++++|.++
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGV----FSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGG----GSSCSSCCEEECCSCCCB
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhH----hCCCccCCEEECCCCccc
Confidence            998 7887665  89999999999887554433    566666776666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.4e-19  Score=165.95  Aligned_cols=177  Identities=23%  Similarity=0.213  Sum_probs=147.5

Q ss_pred             CcEEEEEcCCCCCCCCC--------ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcc-hhhhCCccCC
Q 041140           89 GHVLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLP-VFLGSMGSLR  159 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~  159 (275)
                      ..++.+++++|.+....        ...|+.|++++|.+.+..+. +..+++|++|++++|.+.+. .| ..+..+++|+
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~  424 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLI  424 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC-TTSCTTTTCTTCC
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc-cchhhhhcCCCCC
Confidence            45777777777766542        13677888888888765554 88899999999999998875 33 4688899999


Q ss_pred             EEECCCCCCCCCCcccccCCCCCCeEEcccCCCC-CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcE
Q 041140          160 HIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL-SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV  238 (275)
Q Consensus       160 ~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~-~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  238 (275)
                      +|++++|.+.+..|..+..+++|++|++++|.+. +..|..    +..+++|+.|++++|.+++.+  +..+..+++|++
T Consensus       425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~  498 (570)
T 2z63_A          425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQV  498 (570)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCE
T ss_pred             EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh----hhcccCCCEEECCCCccccCC--hhhhhcccCCCE
Confidence            9999999999888888999999999999999875 345544    889999999999999999873  347788999999


Q ss_pred             EeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       239 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      |++++|++++. ++..+..+++|++|++++|+++|.
T Consensus       499 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          499 LNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             EECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCC
Confidence            99999999987 777899999999999999999885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=2.4e-18  Score=159.50  Aligned_cols=70  Identities=29%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             ccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          204 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       204 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +.++++|+.|++++|.+++.+..+..+..+++|++|++++|++++.+++..+..+++|++|++++|+++|
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence            4444555555555555555433344456666666666666666654344455566666666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.1e-19  Score=156.27  Aligned_cols=153  Identities=18%  Similarity=0.102  Sum_probs=85.5

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC---CcchhhhCCccCCEEECCCCCCCCCCcc----cccCCC
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA---QLPVFLGSMGSLRHIDLSRAEFTGMIPY----QLGNLS  180 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~lp~----~l~~l~  180 (275)
                      .|+.|++++|++.+..|..+..+++|++|++++|.+.+.   ..+..+..+++|++|++++|+++ .++.    .++.++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence            445555555555555555555555555555555554321   00111234555555555555554 2232    134556


Q ss_pred             CCCeEEcccCCCCCcccccccccccCC---CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140          181 NLQYLDLSSQIPLSFLYLENLSWLSGL---SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN  257 (275)
Q Consensus       181 ~L~~L~Ls~n~~~~~~~~~~l~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  257 (275)
                      +|++|++++|.+.+..|..    +..+   ++|++|++++|.++..|.   .+  .++|++|++++|++++. +.  +..
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~----~~~~~~~~~L~~L~Ls~N~l~~lp~---~~--~~~L~~L~Ls~N~l~~~-~~--~~~  292 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPS----APRCMWSSALNSLNLSFAGLEQVPK---GL--PAKLRVLDLSSNRLNRA-PQ--PDE  292 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSC----CSSCCCCTTCCCEECCSSCCCSCCS---CC--CSCCSCEECCSCCCCSC-CC--TTS
T ss_pred             CCCEEECCCCCCCccchhh----HHhccCcCcCCEEECCCCCCCchhh---hh--cCCCCEEECCCCcCCCC-ch--hhh
Confidence            6666666666665544433    3333   577777777777775543   22  25777777777777763 22  466


Q ss_pred             CCCcCEEecccCcCce
Q 041140          258 FSSLYTLDLSYNEFDN  273 (275)
Q Consensus       258 l~~L~~L~L~~N~l~g  273 (275)
                      +++|+.|++++|+|+.
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            6777777777777764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=155.88  Aligned_cols=177  Identities=17%  Similarity=0.079  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCCCCCC--------ccccccccCCCCcceeecC----ccccCCCCCCEEECCCCCCCCCCcchhhhCCccC
Q 041140           91 VLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKIN----PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL  158 (275)
Q Consensus        91 v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp----~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L  158 (275)
                      ++++++++|.+.+..        ...|+.|++++|.+++..+    ..+..+++|++|++++|.+++. .|..+..+++|
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  171 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPAL  171 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCC
Confidence            556666665544321        1245556666666655443    2234456666666666666554 44555566666


Q ss_pred             CEEECCCCCCCCC--Cc--ccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC-CchhhhhCCC
Q 041140          159 RHIDLSRAEFTGM--IP--YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA-SDWFLVTNML  233 (275)
Q Consensus       159 ~~L~L~~n~l~~~--lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l  233 (275)
                      ++|++++|++.+.  ++  ..++.+++|++|++++|.++..... ....+..+++|++|++++|.+++. |.....+..+
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            6666666665431  11  1224556666666666655421110 000134566777777777777765 3211122223


Q ss_pred             CCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       234 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++|++|++++|+++.. +. .+.  ++|++|++++|+|++
T Consensus       251 ~~L~~L~Ls~N~l~~l-p~-~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          251 SALNSLNLSFAGLEQV-PK-GLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TTCCCEECCSSCCCSC-CS-CCC--SCCSCEECCSCCCCS
T ss_pred             CcCCEEECCCCCCCch-hh-hhc--CCCCEEECCCCcCCC
Confidence            5777777777777632 33 332  677777777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=140.87  Aligned_cols=150  Identities=17%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             EEEcCCCCCCCCCc---cccccccCCCCcceeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140           93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF  168 (275)
Q Consensus        93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l  168 (275)
                      .++++++.+..++.   ..++.|++++|++++..|. .+.++++|++|++++|.+++. .+..+..+++|++|++++|.+
T Consensus        15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCcc
Confidence            45556665554432   3567889999999988664 578999999999999999985 555899999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      ++..+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++.+  +..+..+++|+.|++++|.+.+
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcC
Confidence            9777777999999999999999998776666    889999999999999999984  3477889999999999999876


Q ss_pred             C
Q 041140          249 S  249 (275)
Q Consensus       249 ~  249 (275)
                      .
T Consensus       168 ~  168 (220)
T 2v70_A          168 N  168 (220)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2.3e-19  Score=173.27  Aligned_cols=173  Identities=16%  Similarity=0.126  Sum_probs=144.6

Q ss_pred             CcEEEEEcCCCCCCC------------------CC-------ccccccccCCCCcceeecCccccCCCCCCEEECCCCC-
Q 041140           89 GHVLELRLGNPFLHD------------------DE-------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-  142 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~------------------l~-------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-  142 (275)
                      ..++.|++++|.+.+                  ++       ..+|+.|++++|++.+.+|..++++++|++|++++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            578999999999887                  32       2358889999999999999999999999999999998 


Q ss_pred             CCC-CCcchhhhCCc-------cCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140          143 FEK-AQLPVFLGSMG-------SLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       143 l~~-~~~p~~~~~l~-------~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~  212 (275)
                      +++ . +|..++.++       +|++|++++|.++ .+|.  .++.+++|++|++++|.+. ..| .    +..+++|+.
T Consensus       528 lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~----~~~L~~L~~  599 (876)
T 4ecn_A          528 ISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A----FGTNVKLTD  599 (876)
T ss_dssp             SCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C----CCTTSEESE
T ss_pred             ccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h----hcCCCcceE
Confidence            887 6 888887776       9999999999999 8998  8999999999999999887 555 3    888999999


Q ss_pred             eeccCCCCCCCCchhhhhCCCCC-CcEEeccCCcCCCCCCCcccCCCCC--cCEEecccCcCcee
Q 041140          213 LDLTGVDLSTASDWFLVTNMLPS-LQVLKLSACSLHNSLPELPIANFSS--LYTLDLSYNEFDNT  274 (275)
Q Consensus       213 L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~--L~~L~L~~N~l~g~  274 (275)
                      |++++|.++..|.   .+..+++ |+.|++++|.++.  .|..+..++.  |+.|++++|+++|.
T Consensus       600 L~Ls~N~l~~lp~---~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          600 LKLDYNQIEEIPE---DFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             EECCSSCCSCCCT---TSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             EECcCCccccchH---HHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCc
Confidence            9999999985543   5777888 9999999998883  3445665543  88888888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.78  E-value=2.3e-18  Score=162.80  Aligned_cols=174  Identities=20%  Similarity=0.147  Sum_probs=146.4

Q ss_pred             EEEcCCCCCCCCC---ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140           93 ELRLGNPFLHDDE---PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT  169 (275)
Q Consensus        93 ~l~l~~~~~~~l~---~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~  169 (275)
                      .++.+++.+..++   +.+++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|.++
T Consensus         8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC
T ss_pred             eeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC
Confidence            3555555554433   25799999999999987777899999999999999999997 7889999999999999999999


Q ss_pred             CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +..+..++.+++|++|++++|.+.+..+..    +.++++|++|++++|.+++.+  +..+..+++|++|++++|.+++.
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCB
T ss_pred             ccChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCccccc
Confidence            543347999999999999999987665555    889999999999999999874  34678899999999999999886


Q ss_pred             CCCcccC--CCCCcCEEecccCcCcee
Q 041140          250 LPELPIA--NFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       250 ~~~~~l~--~l~~L~~L~L~~N~l~g~  274 (275)
                       ++..+.  .+++|++|++++|.+++.
T Consensus       161 -~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          161 -KSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             -CHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             -CHHHhhccccccccEEECCCCccccc
Confidence             554443  568999999999998763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4.7e-18  Score=139.09  Aligned_cols=136  Identities=19%  Similarity=0.143  Sum_probs=116.0

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      ..++.|++++|++++..+..+..+++|++|++++|.++.. .|..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            4678888888899987777899999999999999999986 688899999999999999999944334568899999999


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +++|.+.+..+..    +..+++|++|++++|.+++.+.  ..+..+++|+.|++++|.+...
T Consensus       111 L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          111 LNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCCcCCC
Confidence            9999988776665    8889999999999999999853  4577889999999999988653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=1.1e-18  Score=160.87  Aligned_cols=171  Identities=20%  Similarity=0.185  Sum_probs=148.3

Q ss_pred             EEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCC
Q 041140           94 LRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG  170 (275)
Q Consensus        94 l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  170 (275)
                      .+.+++.+..++.   ..++.|++++|++++..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|++++
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~   88 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS   88 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS
T ss_pred             EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc
Confidence            6888888776554   4799999999999998899999999999999999999986 66789999999999999999997


Q ss_pred             CCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCC-CchhhhhCCCCCCcEEeccCCcCCC
Q 041140          171 MIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTA-SDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       171 ~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      ..|..++.+++|++|++++|.+.+. .+..    +.++++|++|++++|.+.+. +  +..+..+++|++|++++|.+++
T Consensus        89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----FPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CCHHHHTTCTTCCEEECTTCCCSSSCSSCS----CTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCE
T ss_pred             cCHHHhccCCCCcEEECCCCcccccchhhh----hhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcccc
Confidence            7777799999999999999988753 2333    88999999999999985443 3  2467889999999999999998


Q ss_pred             CCCCcccCCCCCcCEEecccCcCc
Q 041140          249 SLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      . .+..+..+++|++|++++|.++
T Consensus       163 ~-~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          163 Y-QSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             E-CTTTTTTCSEEEEEEEECSBST
T ss_pred             c-ChhhhhccccCceEecccCccc
Confidence            7 6668999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=5e-19  Score=161.42  Aligned_cols=166  Identities=19%  Similarity=0.148  Sum_probs=138.4

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ..++.|++++|.+.+..+    ..|+.|++++|.+++..+     .++|++|++++|.+++.  +.  ..+++|++|+++
T Consensus        58 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~--~~--~~l~~L~~L~L~  128 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRV--SC--SRGQGKKNIYLA  128 (487)
T ss_dssp             TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCE--EE--CCCSSCEEEECC
T ss_pred             CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCC--Cc--cccCCCCEEECC
Confidence            578999999998765322    368889999999986443     38999999999999984  43  357889999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc-CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS-GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      +|.+++..|..++.+++|++|++++|.+.+..+..    +. .+++|+.|++++|.+++.+.    ...+++|+.|+|++
T Consensus       129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSS  200 (487)
T ss_dssp             SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCS
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccccc----cccCCCCCEEECCC
Confidence            99999888888999999999999999988766554    54 78999999999999998753    34589999999999


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |.+++. ++ .+..+++|+.|++++|.|++
T Consensus       201 N~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          201 NKLAFM-GP-EFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             SCCCEE-CG-GGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCCC-CH-hHcCCCCccEEEecCCcCcc
Confidence            999985 55 48899999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=2.2e-18  Score=159.44  Aligned_cols=173  Identities=20%  Similarity=0.181  Sum_probs=113.3

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      .+++.|++++|.+.++..      ..|+.|++++|++++..|..+.++++|++|++++|.++.. .|..+..+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence            457777888777655432      3566777777777766666677777777777777777764 446677777777777


Q ss_pred             CCCCCCCCCCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCC----c
Q 041140          163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL----Q  237 (275)
Q Consensus       163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L----~  237 (275)
                      +++|.+.+..+..++.+++|++|++++|.+.+. .|..    +.++++|++|++++|.+++.+  +..++.+++|    +
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNL  180 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG----GGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhh----hcccCCCCEEeCcCCccceec--HHHccchhccchhhh
Confidence            777777643333577777777777777766542 3444    667777777777777776653  1233344444    6


Q ss_pred             EEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140          238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNE  270 (275)
Q Consensus       238 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~  270 (275)
                      .+++++|.+++. ++..+... +|+.|++++|.
T Consensus       181 ~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          181 SLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             EEECTTCCCCEE-CTTTTTTC-EEEEEEEESCC
T ss_pred             hcccCCCCceec-CHHHhccC-cceeEeccccc
Confidence            777777777665 45445444 67777777764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=160.33  Aligned_cols=121  Identities=21%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      .+++.+++++|.+.++.+      .+|+.|++++|++++..|..+.++++|++|++++|.++.  +|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEe
Confidence            567888888888776643      367778888888888777788888888888888888875  6665  788888888


Q ss_pred             CCCCCCCC-CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC--CeeeccCCCC
Q 041140          163 LSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL--KHLDLTGVDL  220 (275)
Q Consensus       163 L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L--~~L~L~~n~l  220 (275)
                      +++|.+++ .+|..++.+++|++|++++|.+.+.   .    +..+++|  +.|++++|.+
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~----~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S----VLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G----GGGGTTSCEEEEEEEECTT
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccchh---h----ccccccceeeEEEeecccc
Confidence            88888876 4677888888888888888877541   1    5556666  8888888877

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=167.05  Aligned_cols=177  Identities=17%  Similarity=0.082  Sum_probs=148.9

Q ss_pred             EEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCc-chhhhCCccCCEEECCCCCCC
Q 041140           93 ELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQL-PVFLGSMGSLRHIDLSRAEFT  169 (275)
Q Consensus        93 ~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~L~L~~n~l~  169 (275)
                      .++.+++++...+.  ..++.|++++|.+++..|..+.++++|++|++++|..... + |..+.++++|++|++++|.+.
T Consensus         8 ~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             EEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC
T ss_pred             EEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc
Confidence            34455555444333  5788999999999999999999999999999999976654 5 778999999999999999999


Q ss_pred             CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +..|..++++++|++|++++|.+.+..+...  .+.++++|++|++++|.+++.+. +..++.+++|++|++++|.+++.
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCC
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCee
Confidence            8889999999999999999998876444321  17889999999999999998742 34688999999999999999987


Q ss_pred             CCCcccCCC--CCcCEEecccCcCcee
Q 041140          250 LPELPIANF--SSLYTLDLSYNEFDNT  274 (275)
Q Consensus       250 ~~~~~l~~l--~~L~~L~L~~N~l~g~  274 (275)
                       .+..+..+  ++|+.|++++|.+++.
T Consensus       164 -~~~~l~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          164 -CEHELEPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             -CSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred             -CHHHcccccCCccceEECCCCccccc
Confidence             66677776  8999999999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.2e-18  Score=159.70  Aligned_cols=165  Identities=24%  Similarity=0.226  Sum_probs=133.8

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      .+++.|+++++.+..++.    ..|+.|++++|.+.+..|  +..+++|+.|+|++|.+++  +| .+..+++|++|+|+
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECT
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEec
Confidence            457777888887776544    367888888888887555  8889999999999999887  44 68889999999999


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|.+.+ + +.+..+++|+.|+|++|.+.+.  ..    +..+++|+.|+|++|.+++.++    +..+++|+.|+|++|
T Consensus       118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             CCCCCC-C-ccccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCC
Confidence            999885 4 4588899999999999988754  22    7888999999999999988752    678899999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++.  + .+..+++|+.|+|++|.+++
T Consensus       186 ~i~~l--~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          186 HISDL--R-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCBC--G-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCC--h-HHccCCCCCEEEccCCcCcC
Confidence            99874  3 58889999999999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=6.2e-18  Score=147.18  Aligned_cols=165  Identities=20%  Similarity=0.286  Sum_probs=98.7

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.+++++|.+.+...    ..|+.+++++|.+.+..+  +..+++|++|++++|.++.  ++. +..+++|++|++++
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGT  252 (347)
T ss_dssp             TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCS
T ss_pred             CCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCC
Confidence            34444444444444332    134445555555544333  5566666666666666665  333 66666667777766


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |.+.+ + +.+..+++|++|++++|.+.+. +     .+..+++|+.|++++|.+++.+  +..+..+++|++|++++|+
T Consensus       253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          253 NQISD-I-NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             SCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGG--HHHHHTCTTCSEEECCSSS
T ss_pred             CccCC-C-hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcC--hhHhhccccCCEEEccCCc
Confidence            66663 3 3466666777777777665543 1     1566777777777777776653  3456667777777777777


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +++. ++  +..+++|++|++++|.|+
T Consensus       323 l~~~-~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 ITDI-RP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCC-GG--GGGCTTCSEESSSCC---
T ss_pred             cccc-cC--hhhhhccceeehhhhccc
Confidence            7765 33  667777777777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=9.3e-19  Score=150.96  Aligned_cols=169  Identities=17%  Similarity=0.113  Sum_probs=136.0

Q ss_pred             CcEEEEEcCCCCCCCCCc-cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140           89 GHVLELRLGNPFLHDDEP-FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~-~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      ..++.+++++|.+.++.. ..|+.|++++|.+++..+..   +++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus        80 ~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           80 STLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             TTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSC
T ss_pred             CCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCC
Confidence            456777777776555433 36777788888887665543   67899999999999985 56678889999999999999


Q ss_pred             CCCCCcccc-cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140          168 FTGMIPYQL-GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL  246 (275)
Q Consensus       168 l~~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  246 (275)
                      +.+..+..+ ..+++|++|++++|.+.+. +.     ...+++|++|++++|.+++.++   .+..+++|+.|++++|++
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCC
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCcchh---hhcccCcccEEECcCCcc
Confidence            997666666 4789999999999988754 22     4458999999999999998754   467789999999999999


Q ss_pred             CCCCCCcccCCCCCcCEEecccCcCc
Q 041140          247 HNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       247 ~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      ++.  +..+..+++|++|++++|+++
T Consensus       227 ~~l--~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          227 VLI--EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred             cch--hhHhhcCCCCCEEEccCCCcc
Confidence            863  446889999999999999997

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.7e-18  Score=160.19  Aligned_cols=168  Identities=18%  Similarity=0.139  Sum_probs=96.8

Q ss_pred             ccCce-EecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhh
Q 041140           78 TWAGV-VCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG  153 (275)
Q Consensus        78 ~w~gv-~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~  153 (275)
                      .|.++ .|..  ++++.|++++|.+.+++.   .+|+.|++++|.++ .+|   ..+++|++|++++|.+++  +|. +.
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~  119 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LP  119 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CC
T ss_pred             hhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hh
Confidence            46666 4542  356666666666554332   24555555555555 344   234555555555555544  333 32


Q ss_pred             ------------------CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeec
Q 041140          154 ------------------SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDL  215 (275)
Q Consensus       154 ------------------~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L  215 (275)
                                        .+++|++|++++|.+++ +|.   .+++|++|++++|.+.+ .|.     +.  ++|+.|++
T Consensus       120 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-----l~--~~L~~L~L  187 (571)
T 3cvr_A          120 ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-----LP--ESLEALDV  187 (571)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CC--TTCCEEEC
T ss_pred             cCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-----hh--CCCCEEEC
Confidence                              34445555555555542 443   34555555555555443 221     22  67888888


Q ss_pred             cCCCCCCCCchhhhhCCCCCC-------cEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          216 TGVDLSTASDWFLVTNMLPSL-------QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       216 ~~n~l~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ++|.++..|.    +..  +|       +.|+|++|+++.  +|..+..+++|+.|+|++|+|+|.
T Consensus       188 s~N~L~~lp~----~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          188 STNLLESLPA----VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CSSCCSSCCC----CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             cCCCCCchhh----HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCc
Confidence            8888876653    222  55       889999998885  344666799999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=6.7e-19  Score=151.86  Aligned_cols=165  Identities=19%  Similarity=0.153  Sum_probs=111.8

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.|++++|.+.+...    ..|+.|++++|.+++..     ..+.|++|++++|.+++  ++.  ..+++|++|++++
T Consensus        59 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~--~~~--~~~~~L~~L~l~~  129 (317)
T 3o53_A           59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR--VSC--SRGQGKKNIYLAN  129 (317)
T ss_dssp             TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE--EEE--CCCSSCEEEECCS
T ss_pred             cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCC--cCc--cccCCCCEEECCC
Confidence            34455555544432111    23444555555544321     12455555555555554  222  2367788888888


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccc-cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWL-SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      |++++..+..++.+++|++|++++|.+.+..+..    + ..+++|++|++++|.+++.+.    ...+++|++|++++|
T Consensus       130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred             CCCCCccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCC
Confidence            8888666667888889999999998887654443    3 467899999999999888742    235889999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++. ++ .+..+++|++|++++|+|++
T Consensus       202 ~l~~l-~~-~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          202 KLAFM-GP-EFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CCCEE-CG-GGGGGTTCSEEECTTSCCCE
T ss_pred             cCCcc-hh-hhcccCcccEEECcCCcccc
Confidence            99875 55 48889999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=7.7e-18  Score=152.63  Aligned_cols=164  Identities=22%  Similarity=0.274  Sum_probs=103.0

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.+++++|.+.++..    ..|+.|++++|.+.+..+  +..+++|++|++++|.+++  ++. +..+++|++|++++
T Consensus       222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCS
T ss_pred             CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCC
Confidence            45555555555544322    245556666666655433  5566666666666666665  333 56666666666666


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |++.+. +. ++.+++|++|++++|.+.+..+      +..+++|+.|++++|.+++.+    .+..+++|+.|++++|+
T Consensus       297 n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          297 NQLEDI-SP-ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDVS----SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             SCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSC
T ss_pred             CcccCc-hh-hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCch----hhccCCCCCEEeCCCCc
Confidence            666643 22 5666667777777666654332      456677777777777777663    45667777777777777


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++. +|  +..+++|++|++++|.+++
T Consensus       365 l~~~-~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          365 ISDL-TP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCBC-GG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCcc-ch--hhcCCCCCEEeccCCcccC
Confidence            7765 44  6777777888887777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.5e-17  Score=141.73  Aligned_cols=147  Identities=20%  Similarity=0.239  Sum_probs=127.9

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      .+++.+++++|.+... + .+..+++|++|++++|.+++  ++. +..+++|++|++++|.+.+ +| .+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            3678899999998754 4 48889999999999999998  555 8999999999999999985 44 489999999999


Q ss_pred             cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140          187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL  266 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  266 (275)
                      +++|.+.+. +     .+..+++|+.|++++|.+++.+    .+..+++|++|++++|++++. ++  +..+++|++|++
T Consensus       119 L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          119 LEHNGISDI-N-----GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYL  185 (291)
T ss_dssp             CTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEEC
T ss_pred             CCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccc-hh--hcCCCccCEEEC
Confidence            999988753 2     2788999999999999999873    567889999999999999886 44  899999999999


Q ss_pred             ccCcCce
Q 041140          267 SYNEFDN  273 (275)
Q Consensus       267 ~~N~l~g  273 (275)
                      ++|.+++
T Consensus       186 ~~N~i~~  192 (291)
T 1h6t_A          186 SKNHISD  192 (291)
T ss_dssp             CSSCCCB
T ss_pred             CCCcCCC
Confidence            9999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=7.4e-18  Score=157.38  Aligned_cols=147  Identities=25%  Similarity=0.229  Sum_probs=124.9

Q ss_pred             cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140          118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY  197 (275)
Q Consensus       118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~  197 (275)
                      +++ .+|+.+  -+.+++|+|++|.|+.. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+.+..+
T Consensus        42 ~l~-~vP~~l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           42 NFY-KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CCS-SCCSSS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CcC-ccCCCC--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            443 456544  25789999999999984 45689999999999999999996556689999999999999999876554


Q ss_pred             ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      ..    +.++++|++|++++|.+++.++  ..++.+++|++|++++|.+++...+..++.+++|++|++++|+|++-
T Consensus       118 ~~----f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          118 GA----FSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             GG----GTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             HH----hcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            44    8899999999999999999853  35789999999999999998754667889999999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=1.6e-17  Score=144.65  Aligned_cols=167  Identities=23%  Similarity=0.260  Sum_probs=121.5

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.++++++.+.+...    ..|+.+++++|.+.+..+  +..+++|++|++++|.+++  ++. +..+++|++|++++
T Consensus       156 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGN  230 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCS
T ss_pred             CCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccC
Confidence            34455555554444332    245666667766654322  6667777777777777766  333 67788888888888


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |.+.+ ++. +..+++|++|++++|.+.+.      ..+..+++|++|++++|.+++.+    .+..+++|+.|++++|.
T Consensus       231 n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          231 NKITD-LSP-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             SCCCC-CGG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSC
T ss_pred             CccCC-Ccc-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCc
Confidence            88874 444 77888888888888877643      12778889999999999888874    45678899999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +++. ++..+..+++|++|++++|++++.
T Consensus       299 l~~~-~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          299 LGNE-DMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CCGG-GHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCc-ChhHhhccccCCEEEccCCccccc
Confidence            9876 666788999999999999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=8.6e-18  Score=147.53  Aligned_cols=153  Identities=24%  Similarity=0.229  Sum_probs=127.8

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhh-CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      +.+++++++++. +|..+.  ..++.|++++|.++.. .+..+. .+++|++|++++|++++..+..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            467788888864 776553  5689999999999984 445565 89999999999999997666789999999999999


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCccc---CCCCCcCEEe
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI---ANFSSLYTLD  265 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~  265 (275)
                      +|.+....+..    +..+++|+.|++++|.+++.+  +..+..+++|+.|+|++|++++. ++..+   ..+++|+.|+
T Consensus        97 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A           97 SNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             SSCCCEECTTT----TTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEE
T ss_pred             CCcCCcCCHHH----hCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEE
Confidence            99987655544    789999999999999999874  34788899999999999999985 66555   6799999999


Q ss_pred             cccCcCce
Q 041140          266 LSYNEFDN  273 (275)
Q Consensus       266 L~~N~l~g  273 (275)
                      |++|+|++
T Consensus       170 L~~N~l~~  177 (361)
T 2xot_A          170 LSSNKLKK  177 (361)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCCCc
Confidence            99999975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.2e-17  Score=140.28  Aligned_cols=144  Identities=19%  Similarity=0.254  Sum_probs=98.1

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      |+.|++++|+++. ++ .+..+++|++|++++|.+++  ++. +..+++|++|++++|++++ +|... . ++|++|+++
T Consensus        43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~  114 (263)
T 1xeu_A           43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD  114 (263)
T ss_dssp             CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred             CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence            3334444445542 34 46677778888888887777  444 7777788888888887774 44432 2 778888888


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEeccc
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY  268 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  268 (275)
                      +|.+.+. + .    +..+++|+.|++++|.+++.+    .+..+++|+.|++++|++++.   ..+..+++|+.|++++
T Consensus       115 ~N~l~~~-~-~----l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          115 NNELRDT-D-S----LIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SSCCSBS-G-G----GTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred             CCccCCC-h-h----hcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCC
Confidence            8776543 1 2    677778888888888777763    455677788888888877764   3577777788888887


Q ss_pred             CcCce
Q 041140          269 NEFDN  273 (275)
Q Consensus       269 N~l~g  273 (275)
                      |.+++
T Consensus       182 N~~~~  186 (263)
T 1xeu_A          182 QKCVN  186 (263)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            77654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=7.7e-18  Score=131.74  Aligned_cols=135  Identities=22%  Similarity=0.208  Sum_probs=104.4

Q ss_pred             CCCCCCEEECCCCCCC-CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCC
Q 041140          129 DLKHLVYLELSNNNFE-KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGL  207 (275)
Q Consensus       129 ~l~~L~~L~Ls~n~l~-~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l  207 (275)
                      ..++|++|++++|.++ +. +|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..    +..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML----AEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHC
T ss_pred             CcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH----HhhC
Confidence            3477888888888887 33 777778888888888888888754  67788888888888888877654443    5568


Q ss_pred             CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEecccCcCc
Q 041140          208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~N~l~  272 (275)
                      ++|++|++++|.+++.+. +..+..+++|++|++++|.+++. ++   ..+..+++|++|++++|.++
T Consensus        95 ~~L~~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TTCCEEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCCEEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChh
Confidence            888888888888888652 34677888888888888888875 44   46788888888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=6.8e-17  Score=146.17  Aligned_cols=160  Identities=18%  Similarity=0.177  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .+++.+++++|.+.+++.   ..|+.|++++|.+++. +  ++++++|++|++++|.+++  +|  ++.+++|++|++++
T Consensus        64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTT
T ss_pred             CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCC
Confidence            456677777776665532   2466677777777663 3  6677777777777777766  43  66777777777777


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |++++ ++  ++.+++|++|++++|...+..  .    +..+++|+.|++++|.+++.+     +..+++|+.|++++|+
T Consensus       137 N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~----~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          137 NTLTE-ID--VSHNTQLTELDCHLNKKITKL--D----VTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             SCCSC-CC--CTTCTTCCEEECTTCSCCCCC--C----CTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSC
T ss_pred             Cccce-ec--cccCCcCCEEECCCCCccccc--c----cccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCc
Confidence            77775 33  667777777777777443332  2    677888999999999988864     5678899999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +++.    .++.+++|++|++++|++++
T Consensus       203 l~~~----~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          203 ITKL----DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred             CCee----ccccCCCCCEEECcCCcccc
Confidence            9874    37888999999999999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=5.3e-17  Score=133.59  Aligned_cols=144  Identities=21%  Similarity=0.196  Sum_probs=123.5

Q ss_pred             cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140          118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY  197 (275)
Q Consensus       118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~  197 (275)
                      +++ .+|..+.  ++|++|++++|.+++. .|..+..+++|++|++++|++....+..+..+++|++|++++|.+.+..+
T Consensus        30 ~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           30 RHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence            553 5665443  8999999999999996 78889999999999999999985444567899999999999999886655


Q ss_pred             ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ..    +..+++|++|++++|.++..|.   .+..+++|++|++++|++++. ++..+..+++|+.|++++|.+++
T Consensus       106 ~~----~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          106 AV----FDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TT----TTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCT
T ss_pred             hH----hCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccC
Confidence            44    7889999999999999997754   667889999999999999976 66789999999999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=8.5e-17  Score=145.52  Aligned_cols=161  Identities=18%  Similarity=0.171  Sum_probs=112.7

Q ss_pred             CCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           88 TGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      -.+++.+++++|.+.+++.   ..|+.|++++|.+++ +|  ++.+++|++|++++|.+++  ++  ++.+++|++|+++
T Consensus        84 l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~  156 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCH  156 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECC
Confidence            3578899999998877643   357788899998887 44  7888899999999998887  43  6777888888888


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|...+.+  .++.+++|++|++++|.+.+. +      +..+++|+.|++++|.+++.+     ++.+++|+.|++++|
T Consensus       157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~------l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          157 LNKKITKL--DVTPQTQLTTLDCSFNKITEL-D------VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             TCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C------CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSS
T ss_pred             CCCccccc--ccccCCcCCEEECCCCcccee-c------cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCC
Confidence            88655555  366777788888877776542 1      455666666666666666652     455666666666666


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++. +   +..+++|++|++++|+++|
T Consensus       223 ~l~~i-p---~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          223 KLTEI-D---VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSCC-C---CTTCTTCSEEECCSSCCSC
T ss_pred             ccccc-C---ccccCCCCEEEeeCCcCCC
Confidence            66652 2   5566666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=6.1e-17  Score=146.70  Aligned_cols=130  Identities=25%  Similarity=0.300  Sum_probs=81.1

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      +..+++|++|++++|.+++  ++. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+      +..
T Consensus       239 l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP------ISN  307 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG------GGG
T ss_pred             hhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh------hcC
Confidence            4445555555555555554  222 4555555555555555553 222 5556666666666665543222      556


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      +++|+.|++++|.+++.++    +..+++|+.|++++|++++.   ..+..+++|+.|++++|+++|.
T Consensus       308 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCEEECcCCcCCCchh----hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCcc
Confidence            7777777777777777642    45677888888888887764   2577888888888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.1e-17  Score=132.38  Aligned_cols=130  Identities=22%  Similarity=0.245  Sum_probs=92.6

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      +.+++++|++ +.+|..+..  .+++|++++|.+++. .+. .+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            4567777777 456665543  778888888888773 222 37778888888888888887667777788888888888


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +|.+.+..+..    +..+++|++|++++|.+++.+  +..+..+++|++|++++|.+.+.
T Consensus        87 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKM----FLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSS----STTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHH----hcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCc
Confidence            88776655544    667777788888877777763  23566777777777777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=7.4e-18  Score=139.35  Aligned_cols=156  Identities=14%  Similarity=0.091  Sum_probs=130.7

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCEEECCCCC-CCCCCcchhhhCCccCCEEECCC-CCCCCCCcccccCCCCCCe
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-FEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLGNLSNLQY  184 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~~l~~l~~L~~  184 (275)
                      ..++.|++++|++++..+..+.++++|++|++++|. ++.. .+..+..+++|++|++++ |++++..+..+..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            478899999999998777789999999999999997 8874 445789999999999998 9999655567899999999


Q ss_pred             EEcccCCCCCcccccccccccCCCCCC---eeeccCC-CCCCCCchhhhhCCCCCCc-EEeccCCcCCCCCCCcccCCCC
Q 041140          185 LDLSSQIPLSFLYLENLSWLSGLSLLK---HLDLTGV-DLSTASDWFLVTNMLPSLQ-VLKLSACSLHNSLPELPIANFS  259 (275)
Q Consensus       185 L~Ls~n~~~~~~~~~~l~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~  259 (275)
                      |++++|.+.+ .|.     +..+++|+   +|++++| .+++.+.  ..+..+++|+ +|++++|+++.. ++..+.. +
T Consensus       110 L~l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~  179 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-T  179 (239)
T ss_dssp             EEEEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-C
T ss_pred             EeCCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCccc-CHhhcCC-C
Confidence            9999998875 332     56677777   9999999 8988752  3578899999 999999999853 6655555 8


Q ss_pred             CcCEEecccCc-Cce
Q 041140          260 SLYTLDLSYNE-FDN  273 (275)
Q Consensus       260 ~L~~L~L~~N~-l~g  273 (275)
                      +|++|++++|+ +++
T Consensus       180 ~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTV  194 (239)
T ss_dssp             EEEEEECTTCTTCCE
T ss_pred             CCCEEEcCCCCCccc
Confidence            99999999995 764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.5e-17  Score=133.54  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=104.5

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .|+.|++++|.++  .++.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus        67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            4556666666554  334688999999999999999876 6778999999999999999999888899999999999999


Q ss_pred             ccCC-CCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          188 SSQI-PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       188 s~n~-~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      ++|. +.. .+ .    +..+++|++|++++|.+++.+    .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~~-~~-~----l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITD-IM-P----LKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCC-CG-G----GGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred             cCCCCccc-cH-h----hcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence            9997 543 33 2    888999999999999999875    45678999999999999865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=1.3e-16  Score=148.86  Aligned_cols=146  Identities=20%  Similarity=0.257  Sum_probs=127.9

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++  +++ +..+++|++|+|++|.+.+ +| .+..+++|++|++
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            57888999999875 44 58999999999999999998  554 8999999999999999984 44 7899999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+. +     .+..+++|+.|+|++|.+++.+    .+..+++|+.|+|++|.+++. ++  +..+++|+.|+|+
T Consensus       117 s~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          117 EHNGISDI-N-----GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             TTSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECC
T ss_pred             cCCCCCCC-c-----cccCCCccCEEECCCCccCCch----hhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECc
Confidence            99988753 2     2788999999999999999873    577899999999999999986 44  8999999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|+|++
T Consensus       184 ~N~i~~  189 (605)
T 1m9s_A          184 KNHISD  189 (605)
T ss_dssp             SSCCCB
T ss_pred             CCCCCC
Confidence            999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.3e-17  Score=127.78  Aligned_cols=130  Identities=22%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             CCCCCEEECCCCCCC-CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140          130 LKHLVYLELSNNNFE-KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS  208 (275)
Q Consensus       130 l~~L~~L~Ls~n~l~-~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~  208 (275)
                      .++|+.|++++|.++ +. +|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.+.+..|..    +..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCT
T ss_pred             CccCeEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH----hhhCC
Confidence            356777777777776 33 666667777777777777777643  56677777777777777776544433    55577


Q ss_pred             CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEeccc
Q 041140          209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSY  268 (275)
Q Consensus       209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~  268 (275)
                      +|++|++++|.+++.+ .+..+..+++|++|++++|.+++. ++   ..+..+++|++||+++
T Consensus        89 ~L~~L~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEEECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEEECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence            7777777777777653 134566777788888888877765 44   4577777888887763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=7.7e-17  Score=129.03  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=108.7

Q ss_pred             EEEcCCCCCCCCCc---cccccccCCCCcceeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140           93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF  168 (275)
Q Consensus        93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l  168 (275)
                      .++++++.+..++.   ..++.|++++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++|++++|++
T Consensus        12 ~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence            45555555544332   3789999999999877665 488999999999999999996 688999999999999999999


Q ss_pred             CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140          169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS  224 (275)
Q Consensus       169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~  224 (275)
                      ++..|..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+++..
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGS----FEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTS----STTCTTCCEEECTTCCBCCSG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHH----hhcCCCCCEEEeCCCCccCcC
Confidence            9877778999999999999999998776666    889999999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=2.4e-18  Score=149.04  Aligned_cols=174  Identities=21%  Similarity=0.221  Sum_probs=87.2

Q ss_pred             CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceee-cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140           89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGK-INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID  162 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~  162 (275)
                      ..++.++++++.+.+...     ..|+.|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEE
Confidence            345556666555443221     3455666666665544 555555666666666666666544 555566666666666


Q ss_pred             CCCC-CCCCC-CcccccCCCCCCeEEcccC-CCCCc-ccccccccccCCC-CCCeeeccCC--CCCCCCchhhhhCCCCC
Q 041140          163 LSRA-EFTGM-IPYQLGNLSNLQYLDLSSQ-IPLSF-LYLENLSWLSGLS-LLKHLDLTGV--DLSTASDWFLVTNMLPS  235 (275)
Q Consensus       163 L~~n-~l~~~-lp~~l~~l~~L~~L~Ls~n-~~~~~-~~~~~l~~l~~l~-~L~~L~L~~n--~l~~~~~~~~~~~~l~~  235 (275)
                      +++| .+++. ++..+..+++|++|++++| .+.+. .+..    +..++ +|++|++++|  .++... ++..+..+++
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~l~~~L~~L~l~~~~~~~~~~~-l~~~~~~~~~  223 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA----VAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPN  223 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH----HHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTT
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH----HHhcccCCCEEEeCCCcccCCHHH-HHHHHhhCCC
Confidence            6666 44432 4444555566666666665 44322 1111    34444 5555555555  222110 1223334455


Q ss_pred             CcEEeccCCc-CCCCCCCcccCCCCCcCEEecccC
Q 041140          236 LQVLKLSACS-LHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       236 L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      |++|++++|. +++. .+..+..+++|++|++++|
T Consensus       224 L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          224 LVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTC
T ss_pred             CCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCC
Confidence            5555555554 3333 2224444455555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=127.42  Aligned_cols=127  Identities=24%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             cccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       111 ~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      .+++++|+++ .+|..+.  ++|++|++++|.++.  +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4556666665 4555432  467777777777764  6666777777777777777777555556667777777777777


Q ss_pred             CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       191 ~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      .+.+..+..    +..+++|++|++++|.++..+.  ..+..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRT----FDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTT----TTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHH----hCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeec
Confidence            666554444    6666667777777776666542  245556666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=7.1e-17  Score=135.62  Aligned_cols=145  Identities=19%  Similarity=0.210  Sum_probs=123.0

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .+..++++.+.+++..  .+..+++|++|++++|.++.  +| .+..+++|++|++++|++++ +|. +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            3455667777887544  47889999999999999987  66 68899999999999999995 555 999999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+..+      +.. ++|+.|++++|.+++.+    .+..+++|+.|++++|++++. +  .+..+++|++|+++
T Consensus        93 ~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           93 NRNRLKNLNG------IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLH  158 (263)
T ss_dssp             CSSCCSCCTT------CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECT
T ss_pred             CCCccCCcCc------ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECC
Confidence            9998875432      333 89999999999999874    478899999999999999885 3  58899999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|++++
T Consensus       159 ~N~i~~  164 (263)
T 1xeu_A          159 GNEITN  164 (263)
T ss_dssp             TSCCCB
T ss_pred             CCcCcc
Confidence            999976

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=7.3e-19  Score=155.53  Aligned_cols=185  Identities=19%  Similarity=0.109  Sum_probs=125.0

Q ss_pred             CcEEEEEcCCCCCCCC----------------CccccccccCCCCccee----ecCccccCCCCCCEEECCCCCCCCC--
Q 041140           89 GHVLELRLGNPFLHDD----------------EPFWLEDYKDETSKLIG----KINPSLLDLKHLVYLELSNNNFEKA--  146 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l----------------~~~~L~~l~l~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~~--  146 (275)
                      ..++.|+++++.+..+                ....|+.|++++|.+.+    .+|..+..+++|++|++++|.++..  
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            5677888887755432                11467778888888876    4676777788888888888887642  


Q ss_pred             -CcchhhhCC---------ccCCEEECCCCCCC-CCCc---ccccCCCCCCeEEcccCCCCCcccccccc-cccCCCCCC
Q 041140          147 -QLPVFLGSM---------GSLRHIDLSRAEFT-GMIP---YQLGNLSNLQYLDLSSQIPLSFLYLENLS-WLSGLSLLK  211 (275)
Q Consensus       147 -~~p~~~~~l---------~~L~~L~L~~n~l~-~~lp---~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~l~~L~  211 (275)
                       .++..+..+         ++|++|++++|++. +.+|   ..+..+++|++|++++|.+.........+ .+..+++|+
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~  219 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  219 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence             022233333         78888888888886 3444   35667788888888888765221000111 267788889


Q ss_pred             eeeccCCCCCCC--CchhhhhCCCCCCcEEeccCCcCCCCC---CCccc--CCCCCcCEEecccCcCce
Q 041140          212 HLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSL---PELPI--ANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       212 ~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l--~~l~~L~~L~L~~N~l~g  273 (275)
                      .|++++|.++..  ..++..+..+++|++|+|++|.+++..   .+..+  +.+++|++|+|++|.+++
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            999988888532  123456777888999999999887641   12234  348889999999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=3.7e-17  Score=127.83  Aligned_cols=135  Identities=24%  Similarity=0.263  Sum_probs=113.6

Q ss_pred             ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      .++.|++++|+++ +.+|..+..+++|++|++++|.++.  + ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3444455555887 7889888999999999999999987  5 7788999999999999999987888888899999999


Q ss_pred             cccCCCCCccc-ccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccCCcCCCC
Q 041140          187 LSSQIPLSFLY-LENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       187 Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +++|.+.+... ..    +..+++|++|++++|.+++.+.+. ..+..+++|++|++++|.+...
T Consensus       102 Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999876432 23    889999999999999999886321 3678899999999999988654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=2.7e-19  Score=155.09  Aligned_cols=190  Identities=23%  Similarity=0.239  Sum_probs=151.8

Q ss_pred             CcccCceEecCCCCcEEEEEcCCCCCCCCC-----ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch
Q 041140           76 CCTWAGVVCNDSTGHVLELRLGNPFLHDDE-----PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV  150 (275)
Q Consensus        76 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~-----~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~  150 (275)
                      |.+|.++.|+.  ..++.++++++.+....     ...++.+++++|.+.+..+. +..+++|++|++++|.+++..+|.
T Consensus        36 c~~W~~~~~~~--~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~  112 (336)
T 2ast_B           36 CKRWYRLASDE--SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG  112 (336)
T ss_dssp             CHHHHHHHTCS--TTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH
T ss_pred             HHHHHHHhcCc--hhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH
Confidence            44688888753  45889999998765311     14678889999999887776 668999999999999987633778


Q ss_pred             hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC-CCCCc-ccccccccccCCCCCCeeeccCC-CCCCCCchh
Q 041140          151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ-IPLSF-LYLENLSWLSGLSLLKHLDLTGV-DLSTASDWF  227 (275)
Q Consensus       151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~~~~~-~~~~~l~~l~~l~~L~~L~L~~n-~l~~~~~~~  227 (275)
                      .+..+++|++|++++|.+++..|..++.+++|++|++++| .+.+. .+..    +.++++|++|++++| .+++.. .+
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~-~~  187 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKH-VQ  187 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHH-HH
T ss_pred             HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHH-HH
Confidence            8899999999999999999888889999999999999999 56532 2222    678999999999999 887642 24


Q ss_pred             hhhCCCC-CCcEEeccCC--cCCCCCCCcccCCCCCcCEEecccCc-Cce
Q 041140          228 LVTNMLP-SLQVLKLSAC--SLHNSLPELPIANFSSLYTLDLSYNE-FDN  273 (275)
Q Consensus       228 ~~~~~l~-~L~~L~L~~n--~l~~~~~~~~l~~l~~L~~L~L~~N~-l~g  273 (275)
                      ..+..++ +|++|++++|  .+++...+..+..+++|++|++++|. +++
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence            4567788 9999999999  56533245567889999999999999 664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=4e-16  Score=123.01  Aligned_cols=129  Identities=20%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             cccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       111 ~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      .+++++++++ .+|..+  .++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3444555543 233222  24555555555555543 3333455555555555555555333333455555555555555


Q ss_pred             CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       191 ~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      .+.+..+..    +..+++|++|++++|.+++.+.  ..+..+++|++|++++|.+.+.
T Consensus        87 ~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGV----FDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHH----hhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeecc
Confidence            554333322    4445555555555555554432  2234455555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=4.7e-16  Score=140.56  Aligned_cols=164  Identities=26%  Similarity=0.269  Sum_probs=106.9

Q ss_pred             CcEEEEEcCCCCCCCCCcc--ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           89 GHVLELRLGNPFLHDDEPF--WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~~--~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      ..++.+++++|.+.++...  .|+.|++++|++++ +| .++++++|++|++++|.+++  +|..   ..+|++|++++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCC
Confidence            5678888888887775443  78888889988886 77 58888999999999998887  5543   347888888888


Q ss_pred             CCCCCCcccccCCCCCCeEEcccCCCCCccccc---------------ccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140          167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLE---------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN  231 (275)
Q Consensus       167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~---------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  231 (275)
                      ++.+ +| .++.+++|++|++++|.+.+. |..               .++.+..+++|++|++++|.+++.+.      
T Consensus       184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------  254 (454)
T 1jl5_A          184 QLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------  254 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------
T ss_pred             cCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------
Confidence            8875 66 577888888888888776542 110               01124445555555555555555432      


Q ss_pred             CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ..++|+.|++++|++++. +.    ..++|++|++++|+++|
T Consensus       255 ~~~~L~~L~l~~N~l~~l-~~----~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          255 LPPSLEALNVRDNYLTDL-PE----LPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSE
T ss_pred             cccccCEEECCCCccccc-Cc----ccCcCCEEECcCCccCc
Confidence            124555555555555542 22    12456666666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=8.8e-17  Score=150.30  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhh---------------
Q 041140           91 VLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL---------------  152 (275)
Q Consensus        91 v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~---------------  152 (275)
                      ++.++++++.+..++.   .+|+.|++++|.++ .+|.   .+++|++|++++|.++.  +|..+               
T Consensus        42 l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC--CCCCCTTCCEEEECSCCCCC
T ss_pred             CcEEEecCCCcCccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc--CCCCCCCCCEEECcCCcCCC
Confidence            5555555555443322   24555555555554 2333   34445555555555443  33300               


Q ss_pred             --hCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140          153 --GSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS  194 (275)
Q Consensus       153 --~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~  194 (275)
                        ..+++|++|++++|+++ .+|..   +++|++|++++|.+.+
T Consensus       116 l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          116 LPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC
T ss_pred             CCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC
Confidence              03344555555555554 24432   3566666666665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=2e-18  Score=152.75  Aligned_cols=182  Identities=19%  Similarity=0.170  Sum_probs=143.0

Q ss_pred             CCcEEEEEcCCCCCCCCC----------ccccccccCCCCcceeecCccc----cCC---------CCCCEEECCCCCCC
Q 041140           88 TGHVLELRLGNPFLHDDE----------PFWLEDYKDETSKLIGKINPSL----LDL---------KHLVYLELSNNNFE  144 (275)
Q Consensus        88 ~~~v~~l~l~~~~~~~l~----------~~~L~~l~l~~n~l~~~lp~~l----~~l---------~~L~~L~Ls~n~l~  144 (275)
                      ..+++.|++++|.+.+..          ...|+.|++++|.+++..+..+    ..+         ++|++|++++|.++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            367999999999988731          1478999999999975544433    334         89999999999998


Q ss_pred             CCCcc---hhhhCCccCCEEECCCCCCCC-----CCcccccCCCCCCeEEcccCCCC----CcccccccccccCCCCCCe
Q 041140          145 KAQLP---VFLGSMGSLRHIDLSRAEFTG-----MIPYQLGNLSNLQYLDLSSQIPL----SFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       145 ~~~~p---~~~~~l~~L~~L~L~~n~l~~-----~lp~~l~~l~~L~~L~Ls~n~~~----~~~~~~~l~~l~~l~~L~~  212 (275)
                      ...++   ..+..+++|++|++++|.+..     .+|..+..+++|++|++++|.+.    ...+..    +..+++|++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~  248 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRE  248 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCE
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCE
Confidence            43266   567789999999999999972     34447889999999999999875    223333    788999999


Q ss_pred             eeccCCCCCCC--Cchhhhh--CCCCCCcEEeccCCcCCC----CCCCccc-CCCCCcCEEecccCcCcee
Q 041140          213 LDLTGVDLSTA--SDWFLVT--NMLPSLQVLKLSACSLHN----SLPELPI-ANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       213 L~L~~n~l~~~--~~~~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~l-~~l~~L~~L~L~~N~l~g~  274 (275)
                      |++++|.+++.  ..++..+  +.+++|++|+|++|.+++    .++. .+ .++++|++|++++|++++.
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTT
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCcc
Confidence            99999999876  2234455  448999999999999988    3233 44 6789999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=7.2e-17  Score=123.64  Aligned_cols=129  Identities=22%  Similarity=0.272  Sum_probs=109.0

Q ss_pred             ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140          108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      .++.+++++|+++ +.+|..+..+++|++|++++|.+++  + ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            4555666666998 7899988999999999999999988  5 7788999999999999999987898888899999999


Q ss_pred             cccCCCCCcc-cccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccC
Q 041140          187 LSSQIPLSFL-YLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSA  243 (275)
Q Consensus       187 Ls~n~~~~~~-~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~  243 (275)
                      +++|.+.+.. +..    +..+++|++|++++|.+++.+.+. ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEP----LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGG----GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHH----HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999987632 233    889999999999999999886421 3577889999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.67  E-value=1.5e-15  Score=137.30  Aligned_cols=159  Identities=22%  Similarity=0.226  Sum_probs=120.3

Q ss_pred             CcEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           89 GHVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      .+++.+++++|.+.++..  ..|+.|++++|++++ +|..   .++|++|++++|.+++  +| .++++++|++|++++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCC
Confidence            568888888888777543  368888888888875 3321   2689999999999987  77 5899999999999999


Q ss_pred             CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140          167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL  246 (275)
Q Consensus       167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  246 (275)
                      ++++ +|..+   ++|++|++++|.+.+ .| .    +.++++|++|++++|.+++.+..      .++|++|++++|.+
T Consensus       164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~----~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-E----LQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNIL  227 (454)
T ss_dssp             CCSC-CCCCC---TTCCEEECCSSCCSS-CC-C----CTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCC
T ss_pred             cCcc-cCCCc---ccccEEECcCCcCCc-Cc-c----ccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcC
Confidence            9984 66543   589999999998875 33 3    78889999999999988886531      24677777777777


Q ss_pred             CCCCCCcccCCCCCcCEEecccCcCce
Q 041140          247 HNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       247 ~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +.  .| .++.+++|++|++++|++++
T Consensus       228 ~~--lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          228 EE--LP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             SS--CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             Cc--cc-ccCCCCCCCEEECCCCcCCc
Confidence            63  23 36777777777777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=7.3e-18  Score=147.99  Aligned_cols=180  Identities=19%  Similarity=0.162  Sum_probs=105.5

Q ss_pred             cEEEEEcCCCCCCCCCc-----------cccccccCCCCcceeecCcccc----CC-CCCCEEECCCCCCCCCCcchhhh
Q 041140           90 HVLELRLGNPFLHDDEP-----------FWLEDYKDETSKLIGKINPSLL----DL-KHLVYLELSNNNFEKAQLPVFLG  153 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~-----------~~L~~l~l~~n~l~~~lp~~l~----~l-~~L~~L~Ls~n~l~~~~~p~~~~  153 (275)
                      +++.+++++|.+.+...           ..|+.|++++|.+++..+..++    .+ ++|++|++++|.+++. .+..+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHH
Confidence            57777777776655322           4566677777777655554332    33 6777777777777664 333332


Q ss_pred             ----C-CccCCEEECCCCCCCCCCc----ccccCCC-CCCeEEcccCCCCCcccccccccccCC-CCCCeeeccCCCCCC
Q 041140          154 ----S-MGSLRHIDLSRAEFTGMIP----YQLGNLS-NLQYLDLSSQIPLSFLYLENLSWLSGL-SLLKHLDLTGVDLST  222 (275)
Q Consensus       154 ----~-l~~L~~L~L~~n~l~~~lp----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~l-~~L~~L~L~~n~l~~  222 (275)
                          . .++|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+......+... ++|++|++++|.+++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence                2 2467777777777764332    3334444 777777777766544333211123444 477777777777766


Q ss_pred             CC--chhhhhCC-CCCCcEEeccCCcCCCCCCC----cccCCCCCcCEEecccCcC
Q 041140          223 AS--DWFLVTNM-LPSLQVLKLSACSLHNSLPE----LPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       223 ~~--~~~~~~~~-l~~L~~L~L~~n~l~~~~~~----~~l~~l~~L~~L~L~~N~l  271 (275)
                      ..  .++..+.. .++|++|++++|.+++. ..    ..+..+++|++|++++|.+
T Consensus       211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             SCHHHHHHHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             hHHHHHHHHHhcCCCCceEEECcCCCCCcH-HHHHHHHHHhcCCCccEEEeccCCc
Confidence            31  12233333 34777777777777764 22    2345667777777777763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=1.4e-16  Score=139.27  Aligned_cols=189  Identities=17%  Similarity=0.102  Sum_probs=105.4

Q ss_pred             cccCceEecCCC---------CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCc-cccCCCCCCE-EECC
Q 041140           77 CTWAGVVCNDST---------GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINP-SLLDLKHLVY-LELS  139 (275)
Q Consensus        77 c~w~gv~c~~~~---------~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~-L~Ls  139 (275)
                      |.+..|.|....         ..+++|+|++|.|..+..      .+|+.|++++|.+.+.+|. .|.+++.+++ +.++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            677888886421         235556666665543322      2455555555555554443 3445555443 3344


Q ss_pred             CCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC-CCCCcccccccccccCC-CCCCeeeccC
Q 041140          140 NNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ-IPLSFLYLENLSWLSGL-SLLKHLDLTG  217 (275)
Q Consensus       140 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~~~~~~~~~~l~~l~~l-~~L~~L~L~~  217 (275)
                      +|+++.. .|..+..+++|++|++++|++....+..+....++..+++.++ .+....+..    +..+ ..++.|++++
T Consensus        89 ~N~l~~l-~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           89 ANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS----FVGLSFESVILWLNK  163 (350)
T ss_dssp             ETTCCEE-CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS----STTSBSSCEEEECCS
T ss_pred             CCccccc-CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc----hhhcchhhhhhcccc
Confidence            4555553 3444555555555555555555332223334444445555432 222111111    3333 3578889999


Q ss_pred             CCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       218 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |.++..+.   ......+|+.+++.+|+..+.+++..|..+++|++||+++|+|+.
T Consensus       164 N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          164 NGIQEIHN---SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             SCCCEECT---TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             ccccCCCh---hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence            98887643   333456788888875433344477778888899999999998863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=9.7e-16  Score=122.73  Aligned_cols=125  Identities=21%  Similarity=0.178  Sum_probs=102.1

Q ss_pred             EEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140           93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT  169 (275)
Q Consensus        93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~  169 (275)
                      .++++++.+..++.   ..++.|++++|+++ .+|..+.++++|++|++++|.++.. .+..|..+++|++|++++|+++
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccC
Confidence            34555555444332   47888999999997 6788899999999999999999985 6667899999999999999999


Q ss_pred             CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140          170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      +..|..+..+++|++|++++|.+....+..    +..+++|+.|++++|.+...
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCEECS
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCCeecC
Confidence            777778999999999999999887654444    77889999999999988765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=2.4e-15  Score=118.50  Aligned_cols=135  Identities=17%  Similarity=0.162  Sum_probs=103.2

Q ss_pred             CcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCC
Q 041140           76 CCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSM  155 (275)
Q Consensus        76 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l  155 (275)
                      .|.|.++.|...  +++.+.       ......++.|++++|++.+..+..+..+++|++|++++|.++.. .+..+..+
T Consensus         6 ~C~~~~l~~~~~--~l~~~p-------~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l   75 (177)
T 2o6r_A            6 SCSGTEIRCNSK--GLTSVP-------TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKL   75 (177)
T ss_dssp             EEETTEEECCSS--CCSSCC-------TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTC
T ss_pred             EeCCCEEEecCC--CCccCC-------CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCC
Confidence            467877777541  222111       11124677888888899876666788999999999999999874 44557899


Q ss_pred             ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140          156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS  224 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~  224 (275)
                      ++|++|++++|++++..+..+..+++|++|++++|.+.+..+..    +..+++|++|++++|.+.+..
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBCCCH
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCeeccC
Confidence            99999999999999665566788999999999999887554433    677899999999999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=5.6e-18  Score=157.04  Aligned_cols=154  Identities=24%  Similarity=0.159  Sum_probs=111.8

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCC-------------CCCCCcchhhhCC-------------------
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-------------FEKAQLPVFLGSM-------------------  155 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-------------l~~~~~p~~~~~l-------------------  155 (275)
                      +|+.|++++|++. .+|++++++++|+.|++++|.             +.+. .|..++.+                   
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhhh
Confidence            5667777777775 677777777777777776553             2222 33222211                   


Q ss_pred             -------------ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCC
Q 041140          156 -------------GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST  222 (275)
Q Consensus       156 -------------~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~  222 (275)
                                   ..|++|++++|.+++ +|. ++.+++|++|++++|.+. ..|..    ++.+++|+.|++++|.+++
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC
T ss_pred             hhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC
Confidence                         146788888888884 676 888888888888888877 44554    7888888888888888888


Q ss_pred             CCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140          223 ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT  274 (275)
Q Consensus       223 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~  274 (275)
                      .|    .++.+++|+.|+|++|++++...|..++.+++|+.|++++|+|++.
T Consensus       501 lp----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          501 VD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CG----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             Cc----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            64    5677888888888888888762166788888888888888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=2e-16  Score=124.69  Aligned_cols=137  Identities=18%  Similarity=0.098  Sum_probs=108.1

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      .+.++++|+.|++++|.++.  +|......++|++|++++|.+++ + ..++.+++|++|++++|.+.+..+..    +.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~   85 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL----DQ   85 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH----HH
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcch----hh
Confidence            35678899999999999986  65533334499999999999985 3 67888999999999999887543332    47


Q ss_pred             CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc---ccCCCCCcCEEecccCcCc
Q 041140          206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL---PIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~L~~N~l~  272 (275)
                      .+++|++|++++|.++..+. ...+..+++|+.|++++|.++.. +..   .+..+++|+.||+++|.+.
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            88999999999999977653 23677889999999999999864 442   4788999999999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=1.9e-17  Score=145.33  Aligned_cols=184  Identities=18%  Similarity=0.119  Sum_probs=139.1

Q ss_pred             CcEEEEEcCCCCCCCCCc----------c-ccccccCCCCcceeecCccccCC-----CCCCEEECCCCCCCCCCcchhh
Q 041140           89 GHVLELRLGNPFLHDDEP----------F-WLEDYKDETSKLIGKINPSLLDL-----KHLVYLELSNNNFEKAQLPVFL  152 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----------~-~L~~l~l~~n~l~~~lp~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~~  152 (275)
                      ..++.|++++|.+.+...          . .|+.|++++|.+++..+..+..+     ++|++|++++|.+++. .+..+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHHH
Confidence            459999999999887653          2 68999999999998777766664     9999999999999875 55544


Q ss_pred             ----hCC-ccCCEEECCCCCCCCCCcccc----cC-CCCCCeEEcccCCCCCcccccccccccCCC-CCCeeeccCCCCC
Q 041140          153 ----GSM-GSLRHIDLSRAEFTGMIPYQL----GN-LSNLQYLDLSSQIPLSFLYLENLSWLSGLS-LLKHLDLTGVDLS  221 (275)
Q Consensus       153 ----~~l-~~L~~L~L~~n~l~~~lp~~l----~~-l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~-~L~~L~L~~n~l~  221 (275)
                          ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+.........+..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                444 899999999999987655544    34 369999999999887544333222345555 9999999999998


Q ss_pred             CCCc--hhhhhCCC-CCCcEEeccCCcCCCCC---CCcccCC-CCCcCEEecccCcCce
Q 041140          222 TASD--WFLVTNML-PSLQVLKLSACSLHNSL---PELPIAN-FSSLYTLDLSYNEFDN  273 (275)
Q Consensus       222 ~~~~--~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~l~~-l~~L~~L~L~~N~l~g  273 (275)
                      +...  +...+... ++|++|+|++|.+++..   .+..+.. .++|++|++++|.+++
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            7632  23345556 59999999999998741   1223444 4699999999999976

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=2.2e-15  Score=140.85  Aligned_cols=160  Identities=23%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             cEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140           90 HVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      .++.|++++|.+..++.  .+|+.|++++|.+++ +|.   .+++|+.|++++|.++.  +|..   +++|++|++++|+
T Consensus        82 ~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~  152 (622)
T 3g06_A           82 ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQ  152 (622)
T ss_dssp             TCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSC
T ss_pred             CCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCc
Confidence            45555555555444322  245555555555554 333   45666777777777666  5543   4789999999998


Q ss_pred             CCCCCccccc---CC--------------CCCCeEEcccCCCCCccccccccccc--------------CCCCCCeeecc
Q 041140          168 FTGMIPYQLG---NL--------------SNLQYLDLSSQIPLSFLYLENLSWLS--------------GLSLLKHLDLT  216 (275)
Q Consensus       168 l~~~lp~~l~---~l--------------~~L~~L~Ls~n~~~~~~~~~~l~~l~--------------~l~~L~~L~L~  216 (275)
                      +++ +|..+.   .+              ++|++|++++|.+.+... . +..+.              .+++|+.|+++
T Consensus       153 l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls  229 (622)
T 3g06_A          153 LAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-L-PSELYKLWAYNNRLTSLPALPSGLKELIVS  229 (622)
T ss_dssp             CSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C-CTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             CCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-c-cchhhEEECcCCcccccCCCCCCCCEEEcc
Confidence            884 443222   22              677777777776654211 1 00011              12456666666


Q ss_pred             CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +|.+++.+      ..+++|+.|++++|+++.. +.    .+++|++|++++|+|+
T Consensus       230 ~N~L~~lp------~~l~~L~~L~Ls~N~L~~l-p~----~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          230 GNRLTSLP------VLPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             SSCCSCCC------CCCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCC
T ss_pred             CCccCcCC------CCCCcCcEEECCCCCCCcC-Cc----ccccCcEEeCCCCCCC
Confidence            66666543      2345667777777766642 32    4566777777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.63  E-value=1.5e-18  Score=139.63  Aligned_cols=151  Identities=26%  Similarity=0.230  Sum_probs=126.4

Q ss_pred             ccccccCCCCcceeecCc------cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCC
Q 041140          108 WLEDYKDETSKLIGKINP------SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN  181 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~------~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~  181 (275)
                      .++.++++.+.+.|.+|.      .+..+++|++|++++|.+++  +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            345556666788888776      88999999999999999998  77 8899999999999999998 78888888899


Q ss_pred             CCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc--------
Q 041140          182 LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL--------  253 (275)
Q Consensus       182 L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------  253 (275)
                      |++|++++|.+.+. + .    +..+++|++|++++|.+++.+. ...+..+++|++|++++|.+++. ++.        
T Consensus        95 L~~L~L~~N~l~~l-~-~----~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~  166 (198)
T 1ds9_A           95 LEELWISYNQIASL-S-G----IEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYND-YKENNATSEYR  166 (198)
T ss_dssp             CSEEEEEEEECCCH-H-H----HHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHH
T ss_pred             CCEEECcCCcCCcC-C-c----cccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccc-cccccchHHHH
Confidence            99999999988753 2 2    7889999999999999998753 34688899999999999999776 332        


Q ss_pred             --ccCCCCCcCEEecccCcCc
Q 041140          254 --PIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       254 --~l~~l~~L~~L~L~~N~l~  272 (275)
                        .+..+++|++||  +|.++
T Consensus       167 ~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          167 IEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHhCCCcEEEC--CcccC
Confidence              378899999997  66654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.62  E-value=7e-15  Score=136.01  Aligned_cols=134  Identities=23%  Similarity=0.298  Sum_probs=104.4

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .++.|++++|++++ +|..+  +++|++|++++|.++.  +|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            67889999999987 88766  3899999999999996  77   568999999999999996 887 655  8999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+.+. |.       .+++|+.|++++|.+++.+.      .+++|++|++++|++++. +.  +.  ++|++|+++
T Consensus       128 s~N~l~~l-p~-------~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~l-p~--l~--~~L~~L~Ls  188 (571)
T 3cvr_A          128 DNNQLTML-PE-------LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFL-PE--LP--ESLEALDVS  188 (571)
T ss_dssp             CSSCCSCC-CC-------CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCC-CC--CC--TTCCEEECC
T ss_pred             CCCcCCCC-CC-------cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCCc-ch--hh--CCCCEEECc
Confidence            99988752 22       45677888888888777652      356777777777777763 33  44  677777777


Q ss_pred             cCcCc
Q 041140          268 YNEFD  272 (275)
Q Consensus       268 ~N~l~  272 (275)
                      +|.|+
T Consensus       189 ~N~L~  193 (571)
T 3cvr_A          189 TNLLE  193 (571)
T ss_dssp             SSCCS
T ss_pred             CCCCC
Confidence            77765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=3.3e-15  Score=142.30  Aligned_cols=154  Identities=18%  Similarity=0.046  Sum_probs=98.8

Q ss_pred             cccccccCCCCcceeecCccccCCCCCCE-----EECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCC
Q 041140          107 FWLEDYKDETSKLIGKINPSLLDLKHLVY-----LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN  181 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~-----L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~  181 (275)
                      ..++.+++..|++.. .+..+.....|..     ++++.|.+..  .|..+..+++|++|+|++|.+. .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            346667777777765 3433322222222     2333344442  5778899999999999999998 89998889999


Q ss_pred             CCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCc
Q 041140          182 LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL  261 (275)
Q Consensus       182 L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  261 (275)
                      |++|+|++|.+. ..|..    +.++++|+.|+|++|.++..|.   .++.+++|++|+|++|.++.  +|..|+.+++|
T Consensus       249 L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L  318 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNL  318 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCC--CCSSTTSCTTC
T ss_pred             CCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCc--cChhhhcCCCc
Confidence            999999999987 55655    8999999999999999996654   67889999999999999974  34469999999


Q ss_pred             CEEecccCcCcee
Q 041140          262 YTLDLSYNEFDNT  274 (275)
Q Consensus       262 ~~L~L~~N~l~g~  274 (275)
                      ++|+|++|.|+|.
T Consensus       319 ~~L~L~~N~l~~~  331 (727)
T 4b8c_D          319 QFLGVEGNPLEKQ  331 (727)
T ss_dssp             CCEECTTSCCCSH
T ss_pred             cEEeCCCCccCCC
Confidence            9999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=9.4e-15  Score=135.39  Aligned_cols=123  Identities=21%  Similarity=0.231  Sum_probs=107.2

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK  211 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~  211 (275)
                      .|+.|++++|.+++  +|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ .| .    ++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCc
Confidence            58999999999998  776 999999999999999999 899999999999999999999986 34 3    89999999


Q ss_pred             eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc---ccCCCCCcCEEec
Q 041140          212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL---PIANFSSLYTLDL  266 (275)
Q Consensus       212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~L  266 (275)
                      .|++++|.+++.+ .+..++.+++|+.|++++|.+++. ++.   .+..+++|+.|++
T Consensus       512 ~L~Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          512 ELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCCCC-CcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence            9999999999983 134788899999999999999986 442   2344899999975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=1.9e-16  Score=142.77  Aligned_cols=143  Identities=22%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             CCCCCEEECCCCCCCCCC---cchhhhCCccCCEEECCCCCCCCCCccccc-----CCCCCCeEEcccCCCCCccccccc
Q 041140          130 LKHLVYLELSNNNFEKAQ---LPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-----NLSNLQYLDLSSQIPLSFLYLENL  201 (275)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-----~l~~L~~L~Ls~n~~~~~~~~~~l  201 (275)
                      +++|++|++++|.++...   ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+.+.......
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            455555555555554311   234444455555555555555432222221     124556666665554432211111


Q ss_pred             ccccCCCCCCeeeccCCCCCCCC--chhhhhCC-CCCCcEEeccCCcCCC----CCCCcccCCCCCcCEEecccCcCce
Q 041140          202 SWLSGLSLLKHLDLTGVDLSTAS--DWFLVTNM-LPSLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       202 ~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ..+..+++|++|++++|.+++..  .+...+.. .++|++|++++|.+++    . .+..+..+++|++|++++|++++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS-LAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH-HHHHHHhCCCccEEECCCCCCCH
Confidence            22456678888888888776541  11222332 5688888888888875    3 34466778888888888888865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=5.7e-14  Score=110.06  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140          133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH  212 (275)
Q Consensus       133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~  212 (275)
                      .+.+++++|.++.  +|..+  .++|++|++++|++++..|..+..+++|++|++++|.+.+..+..    +..+++|++
T Consensus        11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCE
T ss_pred             CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh----ccCCCCCCE
Confidence            4788899988887  67655  378888999999988776778888888899999888887655444    678888888


Q ss_pred             eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      |++++|.+++.+.  ..+..+++|++|+|++|.+...
T Consensus        83 L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           83 LSLNDNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCBCTT
T ss_pred             EECCCCccCEeCH--HHhcCCCCCCEEEeCCCCCCCC
Confidence            8888888888752  3567788888888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=2.3e-16  Score=142.29  Aligned_cols=184  Identities=20%  Similarity=0.127  Sum_probs=100.7

Q ss_pred             cEEEEEcCCCCCCCCC----------ccccccccCCCCcceeecCcccc-CCC----CCCEEECCCCCCCCC---Ccchh
Q 041140           90 HVLELRLGNPFLHDDE----------PFWLEDYKDETSKLIGKINPSLL-DLK----HLVYLELSNNNFEKA---QLPVF  151 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~----------~~~L~~l~l~~n~l~~~lp~~l~-~l~----~L~~L~Ls~n~l~~~---~~p~~  151 (275)
                      +++.+++++|.+.+..          ...|+.|++++|.+.+..+..+. .++    +|++|++++|.++..   .++..
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  108 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  108 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence            4555666666554210          03455666666666543333222 233    466666666666531   14555


Q ss_pred             hhCCccCCEEECCCCCCCCCCcccc-----cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc-
Q 041140          152 LGSMGSLRHIDLSRAEFTGMIPYQL-----GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD-  225 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n~l~~~lp~~l-----~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-  225 (275)
                      +..+++|++|++++|.+.+..+..+     ...++|++|++++|.+.+.........+..+++|++|++++|.++.... 
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  188 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  188 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence            6666666666666666553322222     1244566666666655433211111224556777777777777655411 


Q ss_pred             -hhhhhC-CCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140          226 -WFLVTN-MLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       226 -~~~~~~-~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                       +...+. ..++|++|++++|.+++..   .+..+..+++|++|++++|.+++
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             111111 3457888888888777631   23456677888888888888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1.5e-13  Score=108.15  Aligned_cols=106  Identities=20%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             CEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCee
Q 041140          134 VYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHL  213 (275)
Q Consensus       134 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L  213 (275)
                      +.+++++|.++.  +|..+.  ++|++|++++|++.+..|..+..+++|++|++++|.+.+..+..    +.++++|++|
T Consensus        15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred             cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH----hCCcchhhEE
Confidence            688999999876  777653  78999999999999777888889999999999999887654443    6788899999


Q ss_pred             eccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          214 DLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       214 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      ++++|.+++.+.  ..+..+++|++|++++|.+...
T Consensus        87 ~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           87 DLNDNHLKSIPR--GAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ECCSSCCCCCCT--TTTTTCTTCSEEECCSSCBCTT
T ss_pred             ECCCCccceeCH--HHhccccCCCEEEeCCCCcccc
Confidence            999999988753  3477888999999999988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.8e-13  Score=107.20  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=93.0

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      .+.+++++|+++. +|..+  .+.|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4678889999875 77666  38999999999999996 67889999999999999999996555567899999999999


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS  224 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~  224 (275)
                      +|.+.+..+..    +..+++|++|++++|.++...
T Consensus        87 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGA----FDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTT----TTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHH----hcCCCCCCEEEeCCCCCCCCc
Confidence            99998765554    788999999999999998874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.1e-14  Score=113.07  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=87.8

Q ss_pred             ccCCCCcceeecCccccCCC-CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeEEccc
Q 041140          112 YKDETSKLIGKINPSLLDLK-HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYLDLSS  189 (275)
Q Consensus       112 l~l~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L~Ls~  189 (275)
                      |++++|+++. +|. +..+. +|++|++++|.+++  + ..+..+++|++|++++|.+++ +|.. +..+++|++|++++
T Consensus        24 L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           24 LDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             EECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCS
T ss_pred             EEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCC
Confidence            3333346653 343 44444 88888888888876  4 567788888888888888884 4543 47888888888888


Q ss_pred             CCCCCcccccccccccCCCCCCeeeccCCCCCCCCch-hhhhCCCCCCcEEeccCCcCC
Q 041140          190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW-FLVTNMLPSLQVLKLSACSLH  247 (275)
Q Consensus       190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~  247 (275)
                      |.+... +.  +..+..+++|+.|++++|.++..+.. ...+..+++|+.|+++.|.+.
T Consensus        98 N~i~~~-~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           98 NSLVEL-GD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCCCCG-GG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CcCCcc-hh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            877543 22  11267788888888888888766531 113567788888888888664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=3.5e-13  Score=105.95  Aligned_cols=108  Identities=18%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS  189 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~  189 (275)
                      +.+++++|++ +.+|..+.  ++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4678888888 46787664  8999999999999996 678899999999999999999964444568999999999999


Q ss_pred             CCCCCcccccccccccCCCCCCeeeccCCCCCCCCc
Q 041140          190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD  225 (275)
Q Consensus       190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~  225 (275)
                      |.+.+..+..    +..+++|++|++++|.+...+.
T Consensus        91 N~l~~l~~~~----~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGA----FDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTT----TTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHH----hccccCCCEEEeCCCCcccccc
Confidence            9998655544    7889999999999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=2.1e-16  Score=126.99  Aligned_cols=135  Identities=21%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             ccCCCCCCEEECCCCCCCCC-----CcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccc
Q 041140          127 LLDLKHLVYLELSNNNFEKA-----QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENL  201 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  201 (275)
                      +.....++.++++.+.+.+.     .+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.. .|..  
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~--   88 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENL--   88 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSH--
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccch--
Confidence            34455566666666666554     134489999999999999999995 77 88999999999999998873 3433  


Q ss_pred             ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC-cccCCCCCcCEEecccCcCce
Q 041140          202 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       202 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~N~l~g  273 (275)
                        +..+++|++|++++|.+++.+    .+..+++|++|++++|++++. +. ..+..+++|++|++++|++++
T Consensus        89 --~~~~~~L~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           89 --DAVADTLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             --HHHHHHCSEEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCH-HHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             --hhcCCcCCEEECcCCcCCcCC----ccccCCCCCEEECCCCcCCch-hHHHHHhcCCCCCEEEecCCcccc
Confidence              566789999999999999864    466788999999999999874 32 468899999999999999865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=4.5e-13  Score=116.87  Aligned_cols=171  Identities=16%  Similarity=0.084  Sum_probs=128.0

Q ss_pred             EEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCE-EECCCCC
Q 041140           93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRH-IDLSRAE  167 (275)
Q Consensus        93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~-L~L~~n~  167 (275)
                      .++.+++++..++.   .+++.|++++|+++...+..|.++++|++|++++|.+.+. +|. .|.+++++++ +.+.+|+
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCc
Confidence            46677777766543   5789999999999865555789999999999999998765 554 5788888775 5667799


Q ss_pred             CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccC-CCCCCCCchhhhhCCC-CCCcEEeccCCc
Q 041140          168 FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG-VDLSTASDWFLVTNML-PSLQVLKLSACS  245 (275)
Q Consensus       168 l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~L~~n~  245 (275)
                      +....|..+..+++|++|++++|.+....+..    +....++..+++.+ +.+...+.  ..+..+ ..++.|++++|+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVH----KIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCT----TCCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCEEEECCSSC
T ss_pred             ccccCchhhhhccccccccccccccccCCchh----hcccchhhhhhhccccccccccc--cchhhcchhhhhhcccccc
Confidence            98666778899999999999999887655444    45566788888865 45665542  233444 468999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEeccc-CcCc
Q 041140          246 LHNSLPELPIANFSSLYTLDLSY-NEFD  272 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~-N~l~  272 (275)
                      ++.. ++ ......+|+++++++ |.++
T Consensus       166 i~~i-~~-~~f~~~~L~~l~l~~~n~l~  191 (350)
T 4ay9_X          166 IQEI-HN-SAFNGTQLDELNLSDNNNLE  191 (350)
T ss_dssp             CCEE-CT-TSSTTEEEEEEECTTCTTCC
T ss_pred             ccCC-Ch-hhccccchhHHhhccCCccc
Confidence            9864 55 344567899999986 5443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=1.3e-15  Score=134.24  Aligned_cols=160  Identities=15%  Similarity=0.028  Sum_probs=91.4

Q ss_pred             CcEEEEEcCCCCCCCCC-----------ccccccccCCCCcceeecCccc-cCCCCCCEEECCCCCCCCCCcchhh----
Q 041140           89 GHVLELRLGNPFLHDDE-----------PFWLEDYKDETSKLIGKINPSL-LDLKHLVYLELSNNNFEKAQLPVFL----  152 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~-----------~~~L~~l~l~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~----  152 (275)
                      ..++.+++++|.+....           ...|+.|++++|.++......+ ..+++|++|++++|.++.. -...+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHH
Confidence            46888999988765411           1356667777777654333322 2345667777777776553 22222    


Q ss_pred             -hCCccCCEEECCCCCCCC----CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--c
Q 041140          153 -GSMGSLRHIDLSRAEFTG----MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS--D  225 (275)
Q Consensus       153 -~~l~~L~~L~L~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~--~  225 (275)
                       ...++|++|++++|.++.    .++..+..+++|++|++++|.+.+.........+...++|+.|++++|.++...  .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             134567777777777653    233344566677777777776543221111122455566777777777766531  2


Q ss_pred             hhhhhCCCCCCcEEeccCCcCCCC
Q 041140          226 WFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       226 ~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      +...+...++|++|+|++|.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            233444556677777777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=8.5e-12  Score=108.39  Aligned_cols=106  Identities=21%  Similarity=0.127  Sum_probs=88.0

Q ss_pred             CEEECCCC-CCCCCCcchhhhCCccCCEEECCC-CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140          134 VYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK  211 (275)
Q Consensus       134 ~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~  211 (275)
                      ..++.+++ .++.  +|. +..+++|++|+|++ |.+.+..+..|+.+++|++|+|++|.+.+..+..    +.++++|+
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCC
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH----hcCCcCCC
Confidence            35688887 8887  888 99999999999996 9999766678999999999999999988776655    88899999


Q ss_pred             eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      .|+|++|++++.+.  ..+..++ |+.|+|.+|.+...
T Consensus        84 ~L~l~~N~l~~~~~--~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           84 RLNLSFNALESLSW--KTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EEECCSSCCSCCCS--TTTCSCC-CCEEECCSSCCCCC
T ss_pred             EEeCCCCccceeCH--HHcccCC-ceEEEeeCCCccCC
Confidence            99999999998863  2344444 99999999988754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=1.5e-11  Score=106.92  Aligned_cols=106  Identities=22%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             cccCCCC-cceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          111 DYKDETS-KLIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       111 ~l~l~~n-~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      .++++++ +++. +|. +..+++|++|+|++ |.+++. .+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4567777 7764 888 99999999999996 999985 55789999999999999999998888889999999999999


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS  224 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~  224 (275)
                      +|.+.+..+..    +..++ |+.|++.+|.+....
T Consensus        89 ~N~l~~~~~~~----~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKT----VQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTT----TCSCC-CCEEECCSSCCCCCG
T ss_pred             CCccceeCHHH----cccCC-ceEEEeeCCCccCCC
Confidence            99998654433    44454 999999999999774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=6.6e-14  Score=123.24  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=108.0

Q ss_pred             ccccccCCCCcceeecCcccc-----CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-----c
Q 041140          108 WLEDYKDETSKLIGKINPSLL-----DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-----G  177 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~-----~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-----~  177 (275)
                      .++.+++++|.++......+.     ..++|++|++++|.++...+......+++|++|++++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            567788888887754333322     236888888888888654222233345678888888888874333333     3


Q ss_pred             CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEeccCCcCCCCC---CC
Q 041140          178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSL---PE  252 (275)
Q Consensus       178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~  252 (275)
                      ..++|++|++++|.+...........+...++|++|++++|.++..  ..+...+...++|+.|+|++|.+++..   ..
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            4678888888888765322222112246678888888888887754  123445666778888888888887531   12


Q ss_pred             cccCCCCCcCEEecccCcCce
Q 041140          253 LPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       253 ~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ..+...++|++|+|++|.|++
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhCCCCCEEeccCCCCCH
Confidence            234456788888888888864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.21  E-value=2.3e-12  Score=119.64  Aligned_cols=98  Identities=16%  Similarity=0.075  Sum_probs=59.0

Q ss_pred             EEEEEcCCCC-CCC--C-----CccccccccCCCCcceee----cCccccCCCCCCEEECCCCCCCCC---CcchhhhCC
Q 041140           91 VLELRLGNPF-LHD--D-----EPFWLEDYKDETSKLIGK----INPSLLDLKHLVYLELSNNNFEKA---QLPVFLGSM  155 (275)
Q Consensus        91 v~~l~l~~~~-~~~--l-----~~~~L~~l~l~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l  155 (275)
                      +++++++++. +..  +     ....|+.|++++|.+++.    ++..+..+++|++|++++|.+++.   .++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777664 111  1     113566777777776654    333445567777777777777621   144455667


Q ss_pred             ccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140          156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS  189 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~  189 (275)
                      ++|++|++++|.+.+ +|..+..+++|++|+++.
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence            777777777777663 555556666666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.16  E-value=6.3e-12  Score=116.66  Aligned_cols=105  Identities=13%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             CcEEEEEcCCCCCCCCC-----c---cccccccCCCCc-cee-ecCccccCCCCCCEEECCCCCCCCCC---cchhhhCC
Q 041140           89 GHVLELRLGNPFLHDDE-----P---FWLEDYKDETSK-LIG-KINPSLLDLKHLVYLELSNNNFEKAQ---LPVFLGSM  155 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~-----~---~~L~~l~l~~n~-l~~-~lp~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l  155 (275)
                      ..+++|+++++.+.+..     .   ..|+.|+++++. ++. .++.....+++|++|++++|.+++..   ++.....+
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            45777788777655421     1   137777777665 221 12222346778888888888776532   33345667


Q ss_pred             ccCCEEECCCCCCCC----CCcccccCCCCCCeEEcccCCCC
Q 041140          156 GSLRHIDLSRAEFTG----MIPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      ++|++|++++|.+++    .++..+..+++|++|++++|.+.
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            788888888888762    33444566788888888877654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=1.8e-10  Score=99.35  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             CCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCc-EEeccCCcCCCCCCCcccCC
Q 041140          179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ-VLKLSACSLHNSLPELPIAN  257 (275)
Q Consensus       179 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~  257 (275)
                      +++|+.+++++|.+.......    |.++++|+.+++..| ++..+  ...+..+++|+ .+++.+ .++.. .+..|..
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA-SVTAI-EFGAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT-TCCEE-CTTTTTT
T ss_pred             cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc-cceEE-chhhhhC
Confidence            456666666665554333333    566666666666665 44432  23455566666 666655 44332 4455666


Q ss_pred             CCCcCEEecccCcCc
Q 041140          258 FSSLYTLDLSYNEFD  272 (275)
Q Consensus       258 l~~L~~L~L~~N~l~  272 (275)
                      |++|+.++++.|.++
T Consensus       296 c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          296 CDNLRYVLATGDKIT  310 (329)
T ss_dssp             CTTEEEEEECSSCCC
T ss_pred             CccCCEEEeCCCccC
Confidence            666666666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=1.4e-11  Score=114.33  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=60.1

Q ss_pred             CcEEEEEcCCCCCCCC-------CccccccccCCCC-cceee-cCccccCCCCCCEEECCCCCCCCCCcchhh----hCC
Q 041140           89 GHVLELRLGNPFLHDD-------EPFWLEDYKDETS-KLIGK-INPSLLDLKHLVYLELSNNNFEKAQLPVFL----GSM  155 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l-------~~~~L~~l~l~~n-~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~----~~l  155 (275)
                      .++++++++++.+.+.       ....|+.|++++| .++.. ++..+.++++|++|++++|.+++. .+..+    ..+
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC-CGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc-chHHHHHHhhcC
Confidence            4577788877765542       1236677777777 34332 333344677888888888776654 23223    355


Q ss_pred             ccCCEEECCCCC--CCCC-CcccccCCCCCCeEEcccC
Q 041140          156 GSLRHIDLSRAE--FTGM-IPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       156 ~~L~~L~L~~n~--l~~~-lp~~l~~l~~L~~L~Ls~n  190 (275)
                      ++|++|++++|.  +... ++..+..+++|++|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            678888888776  2111 1112244677888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=2.4e-09  Score=92.33  Aligned_cols=102  Identities=16%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CccCCEEECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCcccccccccccCCCCCC-eeeccCCCCCCCCchhhhhCC
Q 041140          155 MGSLRHIDLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK-HLDLTGVDLSTASDWFLVTNM  232 (275)
Q Consensus       155 l~~L~~L~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~  232 (275)
                      +++|+++++++|.+. .+|. .|..+++|+.+++.+| +.......    |.++++|+ .+++.. .++..+  ...+..
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~--~~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIE--FGAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEEC--TTTTTT
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEc--hhhhhC
Confidence            789999999999998 5554 7899999999999998 55444444    88999999 999988 666654  247888


Q ss_pred             CCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140          233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL  266 (275)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  266 (275)
                      +++|+.++++.|.++.. .+..|..+++|+.++.
T Consensus       296 c~~L~~l~l~~n~i~~I-~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          296 CDNLRYVLATGDKITTL-GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTEEEEEECSSCCCEE-CTTTTCTTCCCCEEEC
T ss_pred             CccCCEEEeCCCccCcc-chhhhcCCcchhhhcc
Confidence            99999999999999875 7778999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=8.6e-11  Score=108.94  Aligned_cols=155  Identities=17%  Similarity=0.031  Sum_probs=89.4

Q ss_pred             CcEEEEEcCCC-CCCC--C-----CccccccccCCCCcceeecCccc----cCCCCCCEEECCCCC--CCCCCcchhhhC
Q 041140           89 GHVLELRLGNP-FLHD--D-----EPFWLEDYKDETSKLIGKINPSL----LDLKHLVYLELSNNN--FEKAQLPVFLGS  154 (275)
Q Consensus        89 ~~v~~l~l~~~-~~~~--l-----~~~~L~~l~l~~n~l~~~lp~~l----~~l~~L~~L~Ls~n~--l~~~~~p~~~~~  154 (275)
                      .+++.|+++++ .+.+  +     ....|+.|++++|.+++..+..+    ..+++|++|++++|.  ++...++..+..
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            46888888877 3332  1     12368888888888776544333    367799999999886  322113333456


Q ss_pred             CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC--------------------------CCcccccccccccCCC
Q 041140          155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP--------------------------LSFLYLENLSWLSGLS  208 (275)
Q Consensus       155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~--------------------------~~~~~~~~l~~l~~l~  208 (275)
                      +++|++|++++|...+.+|..+..+++|++|+++.+..                          ...........+..++
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~  289 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS  289 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence            78899999988832223566666667777776544311                          0000000000122456


Q ss_pred             CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|++|++++|.+++.. ....+..+++|+.|++++|
T Consensus       290 ~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG
T ss_pred             CCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc
Confidence            7777777777754432 2233455666666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=5e-10  Score=97.94  Aligned_cols=147  Identities=17%  Similarity=0.212  Sum_probs=96.2

Q ss_pred             cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc--CCCCCCeEEccc--CCCCCcccc
Q 041140          123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG--NLSNLQYLDLSS--QIPLSFLYL  198 (275)
Q Consensus       123 lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~--~l~~L~~L~Ls~--n~~~~~~~~  198 (275)
                      +...+..+++|+.|.+++|.-..  ++. + .+++|++|++..+.+.......+.  .+++|++|+|+.  |...+....
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            44455678999999998873111  443 3 388999999998887643333443  789999999863  211111111


Q ss_pred             cccc-cc--cCCCCCCeeeccCCCCCCCC-chhhhhCCCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcC
Q 041140          199 ENLS-WL--SGLSLLKHLDLTGVDLSTAS-DWFLVTNMLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       199 ~~l~-~l--~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      ..+. .+  ..+++|++|++.+|.+.... ........+++|++|+|+.|.+.+..   ....+..+++|+.|++++|.+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            0010 12  35789999999999887531 11112246789999999999987641   122345678999999999988


Q ss_pred             ce
Q 041140          272 DN  273 (275)
Q Consensus       272 ~g  273 (275)
                      +.
T Consensus       320 ~d  321 (362)
T 2ra8_A          320 SD  321 (362)
T ss_dssp             CH
T ss_pred             CH
Confidence            74

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.82  E-value=2.7e-10  Score=90.29  Aligned_cols=124  Identities=12%  Similarity=0.020  Sum_probs=63.3

Q ss_pred             cCccccCCCCCCEEECCCC-CCCCC---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCC
Q 041140          123 INPSLLDLKHLVYLELSNN-NFEKA---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLS  194 (275)
Q Consensus       123 lp~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~  194 (275)
                      +...+...+.|++|++++| .+...   .+...+...++|++|+|++|.+...    +...+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3444556677777777777 66542   1233444556667777776666532    22334444566666666665543


Q ss_pred             cccccccccccCCCCCCeeec--cCCCCCCC--CchhhhhCCCCCCcEEeccCCcC
Q 041140          195 FLYLENLSWLSGLSLLKHLDL--TGVDLSTA--SDWFLVTNMLPSLQVLKLSACSL  246 (275)
Q Consensus       195 ~~~~~~l~~l~~l~~L~~L~L--~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l  246 (275)
                      .........+...++|++|++  ++|.+...  ..+...+...++|++|++++|.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            322111122444555666666  55555443  11223333445555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=4.6e-10  Score=88.91  Aligned_cols=125  Identities=12%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             cchhhhCCccCCEEECCCC-CCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCC
Q 041140          148 LPVFLGSMGSLRHIDLSRA-EFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST  222 (275)
Q Consensus       148 ~p~~~~~l~~L~~L~L~~n-~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~  222 (275)
                      +...+...++|++|++++| .+...    +...+...++|++|++++|.+...........+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445667889999999999 87632    445667788999999999988654332222235566889999999999886


Q ss_pred             C--CchhhhhCCCCCCcEEec--cCCcCCCCC---CCcccCCCCCcCEEecccCcCc
Q 041140          223 A--SDWFLVTNMLPSLQVLKL--SACSLHNSL---PELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       223 ~--~~~~~~~~~l~~L~~L~L--~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      .  ..+...+...++|++|+|  ++|.+++..   ....+...++|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5  234556777889999999  889987641   1234556688999999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.70  E-value=2.2e-09  Score=89.69  Aligned_cols=160  Identities=17%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             CCcccCceEecCCCCcEEEEEcCCCC---C-CCCCccccc----cccCCCCcceeecCc-cccCCCCCCE--EECCCCCC
Q 041140           75 NCCTWAGVVCNDSTGHVLELRLGNPF---L-HDDEPFWLE----DYKDETSKLIGKINP-SLLDLKHLVY--LELSNNNF  143 (275)
Q Consensus        75 ~~c~w~gv~c~~~~~~v~~l~l~~~~---~-~~l~~~~L~----~l~l~~n~l~~~lp~-~l~~l~~L~~--L~Ls~n~l  143 (275)
                      ..|.|.|+.|+....+|..+...+..   + +.+..-.++    .+...+|...+.++- .+...+.|..  ++++.|..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            46789999998655566555443321   0 111111111    122233333333332 1333333443  45555533


Q ss_pred             CCCCcch----hhhCCccCCEEECCCCCCCC--CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccC
Q 041140          144 EKAQLPV----FLGSMGSLRHIDLSRAEFTG--MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG  217 (275)
Q Consensus       144 ~~~~~p~----~~~~l~~L~~L~L~~n~l~~--~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~  217 (275)
                      ..  ++.    ...++++|++|+|++|++++  .+|..+..+++|+.|+|++|.+.+....   ..+..+ +|+.|++++
T Consensus       156 ~~--~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l---~~l~~l-~L~~L~L~~  229 (267)
T 3rw6_A          156 SC--MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL---DKIKGL-KLEELWLDG  229 (267)
T ss_dssp             HH--HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG---GGGTTS-CCSEEECTT
T ss_pred             HH--HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh---hhcccC-CcceEEccC
Confidence            22  222    22457788888888888886  4455666788888888888887755221   123344 888888888


Q ss_pred             CCCCCC-Cc----hhhhhCCCCCCcEEe
Q 041140          218 VDLSTA-SD----WFLVTNMLPSLQVLK  240 (275)
Q Consensus       218 n~l~~~-~~----~~~~~~~l~~L~~L~  240 (275)
                      |.+.+. +.    ....+..+|+|+.||
T Consensus       230 Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          230 NSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcCccccCcchhHHHHHHHHCcccCeEC
Confidence            888763 11    123456678888776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.58  E-value=3.6e-07  Score=80.93  Aligned_cols=88  Identities=8%  Similarity=-0.043  Sum_probs=48.1

Q ss_pred             ccccCCCCCCeEEcccCCCC-----CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140          174 YQLGNLSNLQYLDLSSQIPL-----SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN  248 (275)
Q Consensus       174 ~~l~~l~~L~~L~Ls~n~~~-----~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (275)
                      ..+..+++|+.+++.+|...     ......    +.++++|+.+++.. .++...  ...+..+++|+.+.+..+ ++.
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~-~i~~I~--~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPE-SIRILG--QGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCT-TCCEEC--TTTTTTCCSCCEEEECTT-CCE
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCC-ceEEEh--hhhhcCCCCccEEEECcc-ccE
Confidence            35566677777777665432     111112    56666666666663 344332  124555666777766443 332


Q ss_pred             CCCCcccCCCCCcCEEecccCcC
Q 041140          249 SLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       249 ~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      . ....|..+ +|+.+++.+|.+
T Consensus       337 I-~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          337 I-NFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             E-CTTSSSSS-CCCEEEECCSSC
T ss_pred             E-cHHhCCCC-CCCEEEEcCCCC
Confidence            2 44456666 677777766653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=2.9e-08  Score=86.76  Aligned_cols=142  Identities=19%  Similarity=0.151  Sum_probs=94.5

Q ss_pred             CccccCCCCCCEEECCCCCCCC--------CCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCc
Q 041140          124 NPSLLDLKHLVYLELSNNNFEK--------AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF  195 (275)
Q Consensus       124 p~~l~~l~~L~~L~Ls~n~l~~--------~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~  195 (275)
                      ..++..+++|+.|.+..+....        ..+...+..+++|+.|.+++|.-. .++. +. +++|++|++..+.+...
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence            3446678899999887654321        115566788899999999987422 3444 43 89999999998866432


Q ss_pred             ccccccccc--cCCCCCCeeeccC--CCCCCCC---chhhhh--CCCCCCcEEeccCCcCCCCCCCccc---CCCCCcCE
Q 041140          196 LYLENLSWL--SGLSLLKHLDLTG--VDLSTAS---DWFLVT--NMLPSLQVLKLSACSLHNSLPELPI---ANFSSLYT  263 (275)
Q Consensus       196 ~~~~~l~~l--~~l~~L~~L~L~~--n~l~~~~---~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~  263 (275)
                      ....    +  ..+++|++|+|+.  |...+..   .+...+  ..+|+|++|++.+|.+.+. .+..+   ..+++|++
T Consensus       209 ~l~~----l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~  283 (362)
T 2ra8_A          209 VVED----ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLET  283 (362)
T ss_dssp             HHHH----HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSE
T ss_pred             HHHH----HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCE
Confidence            2111    3  3789999999863  2222221   111122  3579999999999998754 22122   35789999


Q ss_pred             EecccCcCce
Q 041140          264 LDLSYNEFDN  273 (275)
Q Consensus       264 L~L~~N~l~g  273 (275)
                      |+|+.|.+++
T Consensus       284 LdLs~n~L~d  293 (362)
T 2ra8_A          284 MDISAGVLTD  293 (362)
T ss_dssp             EECCSSCCBH
T ss_pred             EECCCCCCCh
Confidence            9999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.40  E-value=2e-06  Score=76.07  Aligned_cols=149  Identities=11%  Similarity=0.068  Sum_probs=82.9

Q ss_pred             cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      |+.+.+.. .+...-+.+|.++++|+.+++..|.++.  ++.......+|+.+.+..+ +...-...+.++++|+.+++.
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            34444433 3333333456667777777777776665  3433333466666666533 332222355566666666665


Q ss_pred             cCC---------------------CCCcccccccccccCCCCCCeeeccCCCCC-----CCCchhhhhCCCCCCcEEecc
Q 041140          189 SQI---------------------PLSFLYLENLSWLSGLSLLKHLDLTGVDLS-----TASDWFLVTNMLPSLQVLKLS  242 (275)
Q Consensus       189 ~n~---------------------~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~l~~L~~L~L~  242 (275)
                      .+.                     +......    .+.++++|+.+++.+|.+.     ..+  ...+..+++|+.+++.
T Consensus       235 ~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          235 ENVSTIGQEAFRESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEECCC
T ss_pred             CCccCccccccccCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEEeC
Confidence            431                     1111111    2666777777777776654     111  2356667778888777


Q ss_pred             CCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          243 ACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      . .++.. ....|..|++|+.+++..|
T Consensus       309 ~-~i~~I-~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          309 E-SIRIL-GQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             T-TCCEE-CTTTTTTCCSCCEEEECTT
T ss_pred             C-ceEEE-hhhhhcCCCCccEEEECcc
Confidence            3 34432 5557777888888887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=4.7e-07  Score=75.53  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             ccCCCCc---ceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECCCCCCCCCCcccccCCC--CCCeE
Q 041140          112 YKDETSK---LIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS--NLQYL  185 (275)
Q Consensus       112 l~l~~n~---l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~--~L~~L  185 (275)
                      ++++.|.   +.+.++....++++|+.|+|++|.+++. .+|..+..+++|++|+|++|++.+.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            5666664   2232332335689999999999999983 1556778999999999999999954  3344444  99999


Q ss_pred             EcccCCCCCccccc---ccccccCCCCCCeee
Q 041140          186 DLSSQIPLSFLYLE---NLSWLSGLSLLKHLD  214 (275)
Q Consensus       186 ~Ls~n~~~~~~~~~---~l~~l~~l~~L~~L~  214 (275)
                      ++++|.+.+..+..   ....+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999887543311   111267788999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=1.1e-06  Score=68.48  Aligned_cols=35  Identities=6%  Similarity=0.101  Sum_probs=18.6

Q ss_pred             CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140          132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus       132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      .|+.||++++.++.. --..+..+++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC
Confidence            456666666665553 22334455555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.6e-06  Score=67.49  Aligned_cols=87  Identities=13%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCC-CCCcccccccccccCC----CCCCeeeccCCC-CCCCCchhhh
Q 041140          156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI-PLSFLYLENLSWLSGL----SLLKHLDLTGVD-LSTASDWFLV  229 (275)
Q Consensus       156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~  229 (275)
                      .+|++|+++++.++..--..+..+++|++|+|++|. +++..-..    +..+    ++|++|++++|. ++...  ...
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKG--IIA  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHH--HHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHH--HHH
Confidence            469999999999886655677899999999999985 54332222    5554    479999999985 66542  335


Q ss_pred             hCCCCCCcEEeccCCc-CCC
Q 041140          230 TNMLPSLQVLKLSACS-LHN  248 (275)
Q Consensus       230 ~~~l~~L~~L~L~~n~-l~~  248 (275)
                      +..+++|++|++++|. +++
T Consensus       135 L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCCC
T ss_pred             HhcCCCCCEEECCCCCCCCc
Confidence            6678999999999884 554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=7.3e-06  Score=64.96  Aligned_cols=92  Identities=12%  Similarity=0.046  Sum_probs=45.4

Q ss_pred             ccCCCCCCEEECCCC-CCCCC---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccc
Q 041140          127 LLDLKHLVYLELSNN-NFEKA---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYL  198 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~  198 (275)
                      +.+-+.|++|+|++| .+...   .+-..+..-+.|++|+|++|.+...    +.+.+..-+.|++|+|++|.+......
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566677777664 55431   1223344455666666666666521    223333445566666666655433222


Q ss_pred             cccccccCCCCCCeeeccCC
Q 041140          199 ENLSWLSGLSLLKHLDLTGV  218 (275)
Q Consensus       199 ~~l~~l~~l~~L~~L~L~~n  218 (275)
                      .....+..-+.|+.|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            22222334445555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.65  E-value=1.3e-05  Score=63.46  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             hhCCccCCEEECCCC-CCCC----CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--C
Q 041140          152 LGSMGSLRHIDLSRA-EFTG----MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--S  224 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n-~l~~----~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~  224 (275)
                      +.+-+.|++|+|++| .+..    .+-+.+..-+.|+.|+|++|.+...........+..-+.|++|+|+.|.|...  .
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344567888888875 6642    13345666778888888888776443333222345567788888888888754  3


Q ss_pred             chhhhhCCCCCCcEEeccCC---cCCCC---CCCcccCCCCCcCEEecccCcC
Q 041140          225 DWFLVTNMLPSLQVLKLSAC---SLHNS---LPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       225 ~~~~~~~~l~~L~~L~L~~n---~l~~~---~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      .+...+..-+.|++|+|++|   .+.+.   .+...+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            34556666677888888754   33321   0123455557788888877753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.36  E-value=0.00091  Score=58.61  Aligned_cols=131  Identities=14%  Similarity=0.142  Sum_probs=79.7

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCc-ccccCCCCCCeEEcccCCCCCcccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIP-YQLGNLSNLQYLDLSSQIPLSFLYLENLSWL  204 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  204 (275)
                      +|.++..|+.+.+..+...-  -...+.++.+|+.+.+. +.+. .++ ..+.++.+|+.+++..+ +.......    +
T Consensus       260 aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a----F  330 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDA----F  330 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----T
T ss_pred             eeeecccccEEeccccccee--cCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhH----h
Confidence            56677888888886654322  33467778888888886 3444 333 46778888998888765 33233333    7


Q ss_pred             cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          205 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       205 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      .++.+|+.+.+..+ ++...  ...+..+++|+.+++.++....    ..+..+.+|+.+.+..|.++
T Consensus       331 ~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC-----------
T ss_pred             hCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCEE
Confidence            78888888888644 55543  2367788889988888765432    24667778888888777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.0011  Score=48.74  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140          235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      +|++|+|++|+|+.. ++..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence            455556666655543 444555555566666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.04  E-value=0.0038  Score=54.60  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=75.7

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS  205 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  205 (275)
                      .+.++..++.+.+..+...-  ....+..+..++.+....+.+.   ...+..+.+|+.+.+..+ +.......    +.
T Consensus       248 ~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a----F~  317 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA----FE  317 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT----TT
T ss_pred             cccccccceeEEcCCCccee--eccccccccccceeccCceeec---cccccccccccccccccc-cceechhh----hc
Confidence            45556667777666554322  2334555666666655543321   124566777777777654 32222222    67


Q ss_pred             CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      ++.+|+.+++..+ ++...  ...+..+++|+.+.+..+ ++. +....|..|.+|+.+++..+
T Consensus       318 ~c~~L~~i~lp~~-v~~I~--~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          318 SCTSLVSIDLPYL-VEEIG--KRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEEC--TTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEeCCc-ccEEh--HHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence            7778888877543 44332  135667778888888665 433 24557788888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.96  E-value=0.0051  Score=53.33  Aligned_cols=131  Identities=18%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      +.....|+.+.+..+ +... -...+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +.......    +.+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a----F~~  284 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL----CSG  284 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTT----TTT
T ss_pred             cccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccc----ccc
Confidence            344555666655443 2221 2234555666777666543 33122234556667777766543 22121222    566


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      +.+|+.+.+..+.++....  ..+..+.+|+.+.+..+ ++. +....|.+|++|+.+.+..+
T Consensus       285 c~~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc
Confidence            7777777777666655432  25566677777777543 322 23446777777777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0051  Score=45.09  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=26.8

Q ss_pred             EEECCCCCCC--CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC
Q 041140          135 YLELSNNNFE--KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP  192 (275)
Q Consensus       135 ~L~Ls~n~l~--~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~  192 (275)
                      .++.+++.++  .  +|..+  -++|++|+|++|+|+..-+..+..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~--vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWAS--LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTT--SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCcccc--CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555  3  44321  12455666666666522222345555566666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.46  E-value=0.013  Score=51.07  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh
Q 041140          151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT  230 (275)
Q Consensus       151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  230 (275)
                      .|.++.+|+.+.+..+... .-...+.++++|+.+.+..+ +.......    +.++.+|+.+++..+ ++...  ...+
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~--~~aF  330 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESV----FAGCISLKSIDIPEG-ITQIL--DDAF  330 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEECCTT-CCEEC--TTTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCcee----ecCCCCcCEEEeCCc-ccEeh--HhHh
Confidence            4566778888888655433 23346778899999998754 33222333    788999999999754 44432  2367


Q ss_pred             CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140          231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE  270 (275)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~  270 (275)
                      ..+.+|+.+.+..+ ++. +....|.+|++|+.+++.+|.
T Consensus       331 ~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH
T ss_pred             hCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCce
Confidence            78899999999654 443 356789999999999998874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.08  E-value=0.018  Score=50.32  Aligned_cols=133  Identities=10%  Similarity=0.047  Sum_probs=69.2

Q ss_pred             cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCC--------------
Q 041140          126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI--------------  191 (275)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~--------------  191 (275)
                      +|.++.+|+.+.+..+ ++.. -...|.++.+|+.+++..+ +...-...+..+.+|+.+.+..+.              
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            4555666666666432 4332 2234555666666666533 221112234445555544443321              


Q ss_pred             -------CCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140          192 -------PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL  264 (275)
Q Consensus       192 -------~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  264 (275)
                             ......    ..+.++++|+.+.+..+. ....  ...+..+++|+.+.+..+ +.. +....+..+..|+.+
T Consensus       143 ~~~~~~~~~~i~~----~aF~~c~~L~~i~l~~~~-~~I~--~~~F~~c~~L~~i~l~~~-~~~-I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          143 EITIPEGVTVIGD----EAFATCESLEYVSLPDSM-ETLH--NGLFSGCGKLKSIKLPRN-LKI-IRDYCFAECILLENM  213 (394)
T ss_dssp             EEECCTTCCEECT----TTTTTCTTCCEEECCTTC-CEEC--TTTTTTCTTCCBCCCCTT-CCE-ECTTTTTTCTTCCBC
T ss_pred             ccccCccccccch----hhhcccCCCcEEecCCcc-ceec--cccccCCCCceEEEcCCC-ceE-eCchhhcccccccee
Confidence                   000011    126677888888876543 2221  125566778888888665 322 244567778888877


Q ss_pred             ecccCc
Q 041140          265 DLSYNE  270 (275)
Q Consensus       265 ~L~~N~  270 (275)
                      .+..+.
T Consensus       214 ~~~~~~  219 (394)
T 4fs7_A          214 EFPNSL  219 (394)
T ss_dssp             CCCTTC
T ss_pred             ecCCCc
Confidence            776553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.73  E-value=0.092  Score=45.26  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140          152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN  231 (275)
Q Consensus       152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  231 (275)
                      +....+|+.+.+..+ +...-...+..+..|+.+.+..+ +.......    +.++.+|+.+.+..+ ++..+  ...+.
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~--~~aF~  283 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVP--YLLCS  283 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEEC--TTTTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceecc--ccccc
Confidence            344556666666543 22122335667788888888765 32222222    677888888888643 33332  23567


Q ss_pred             CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      .+++|+.+.+.++.++.. ....|..|.+|+.+++..+
T Consensus       284 ~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECCTT
T ss_pred             ccccccccccccccccee-hhhhhcCCCCCCEEEcCcc
Confidence            889999999988877654 5668999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 4e-10
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 46  CIQSEREALLRFKQDLKDPANRLALWSDGNCC--TWAGVVCNDSTG--HVLELRLGNPFL 101
           C   +++ALL+ K+DL +P    +     +CC  TW GV+C+  T    V  L L    L
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 102 HDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHI 161
               P                I  SL +L +L +L +   N     +P  +  +  L ++
Sbjct: 63  PKPYP----------------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 162 DLSRAEFTGMIPYQLGNLSNLQY 184
            ++    +G IP  L  +  L  
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVT 129

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
           K+L  L+L NN      LP  L  +  L  +++S     G IP Q GNL        +
Sbjct: 244 KNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 159 RHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS-QIPLSFLYLENLSWLSGLSLLKHLDLTG 217
             +DL      G +P  L  L  L  L++S   +        NL      +   +  L G
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 218 VDLSTAS 224
             L   +
Sbjct: 307 SPLPACT 313

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 22/158 (13%)

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS-- 188
                L+L NN   + +      ++ +L  + L   + + + P     L  L+ L LS  
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 189 --SQIPLSF-------------LYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 233
              ++P                +     S  +GL+ +  ++L    L ++         +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271
             L  ++++      ++  +P     SL  L L  N+ 
Sbjct: 150 KKLSYIRIA----DTNITTIPQGLPPSLTELHLDGNKI 183

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 16/180 (8%)

Query: 95  RLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS 154
           ++     +      + +      K  G  N +   +K L Y+ +++ N       +  G 
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----IPQGL 169

Query: 155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLD 214
             SL  + L   + T +    L  L+NL  L LS     +       +       L+ L 
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----PHLRELH 225

Query: 215 LTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN-----SLPELPIANFSSLYTLDLSYN 269
           L    L               +QV+ L   ++         P       +S   + L  N
Sbjct: 226 LNNNKLVKVPGGL---ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 24/159 (15%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ- 183
            +L  L +L  L+L+NN          L  +  L  + L   + + + P           
Sbjct: 235 GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 184 -------------YLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT 230
                         L   + + L F  + ++S +S L+ L+ L      +S  S      
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA--- 348

Query: 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269
             L ++  L      + +  P   +AN + +  L L+  
Sbjct: 349 -NLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190
            +L  L L+ N  +       L S+ +L  +DL+  + + + P  L  L+ L  L L + 
Sbjct: 219 TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 191 IPLSFLYLENLSWLSG----------------LSLLKHLDLTGVDLSTASDWFLVTNMLP 234
              +   L  L+ L+                 L  L +L L   ++S  S      + L 
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLT 329

Query: 235 SLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEF 271
            LQ L  +    +N + ++  +AN +++  L   +N+ 
Sbjct: 330 KLQRLFFA----NNKVSDVSSLANLTNINWLSAGHNQI 363

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 5/120 (4%)

Query: 71  WSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDL 130
                  T    +   S   VL L L                              L +L
Sbjct: 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190
             L  L+  +N          L S+ +L  + L   + + + P  L N SNL  + L++Q
Sbjct: 173 SKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
            + +          + +++LSN+  E + L   L     L+++ L     +  I   L  
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 179 LSNLQYLD 186
            SNL  L+
Sbjct: 94  NSNLVRLN 101

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 122 KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM--IPYQLGNL 179
           + +P L+     V L   ++    A L +   ++  L  ++LS      +  +   +   
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMA--ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90

Query: 180 SNLQYLDLSSQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTASDWFLVTNMLPSLQV 238
            NL+ L+LS     S   L+ +  L    L L    L+      ++    +    P L  
Sbjct: 91  PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR 150

Query: 239 L 239
           L
Sbjct: 151 L 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 10/138 (7%)

Query: 137 ELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFL 196
           EL     E+ +L +     GS + +DL            L   +    L+  S +  +  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAATLR 58

Query: 197 YLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIA 256
            +E       +  L  L+L+   L    D   +    P+L++L LS   L  S  EL   
Sbjct: 59  IIE-----ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKI 112

Query: 257 NFSSLYTLDLSYNEFDNT 274
               L  L L  N   +T
Sbjct: 113 KGLKLEELWLDGNSLSDT 130

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL-HNSLPELP--IANFSSLYTLDL 266
           ++ LD+   +LS A  W  +  +L   QV++L  C L      ++   +    +L  L+L
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 267 SYNEFDN 273
             NE  +
Sbjct: 63  RSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 9e-04
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLS 188
           +  L++       A+    L  +   + + L     T      I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 189 S 189
           S
Sbjct: 64  S 64

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 125 PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQY 184
             L  L  + +L+LS+N          L ++  L  +  S      +      NL  LQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENVDGVA--NLPRLQE 69

Query: 185 LDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL-VTNMLPSLQVL 239
           L L +           +  L     L  L+L G  L         +  MLPS+  +
Sbjct: 70  LLLCNN---RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/72 (16%), Positives = 17/72 (23%), Gaps = 4/72 (5%)

Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP 192
            + +     N     LP  L        + LS           L   + L  L+L     
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 193 LSFLYLENLSWL 204
                   L  L
Sbjct: 68  TKLQVDGTLPVL 79

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
                    +D+SR     +  Y L NL  L+     +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.65

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.3e-34  Score=245.37  Aligned_cols=225  Identities=23%  Similarity=0.387  Sum_probs=182.3

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCCCC---c-----ccccc
Q 041140           45 GCIQSEREALLRFKQDLKDPANRLALW-SDGNCCT--WAGVVCNDST--GHVLELRLGNPFLHDDE---P-----FWLED  111 (275)
Q Consensus        45 ~~~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~l~---~-----~~L~~  111 (275)
                      -|.++|++||++||+++.+|. .+++| .++|||.  |.||+|+...  .||++|+|+++.+.+..   .     ..|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            488999999999999998774 57899 6789994  9999998643  48999999999887532   1     36888


Q ss_pred             ccCCC-CcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          112 YKDET-SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       112 l~l~~-n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      |++++ |+++|.+|++++++++|++|++++|.+.+. .+..+..+.+|+++++++|.+.+.+|..++.+++++++++++|
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            89986 899999999999999999999999999886 6677778888888888888888778888888888888888877


Q ss_pred             CCCCcccccc--------------------------------------------cccccCCCCCCeeeccCCCCCCCCch
Q 041140          191 IPLSFLYLEN--------------------------------------------LSWLSGLSLLKHLDLTGVDLSTASDW  226 (275)
Q Consensus       191 ~~~~~~~~~~--------------------------------------------l~~l~~l~~L~~L~L~~n~l~~~~~~  226 (275)
                      .+.+..|...                                            ...+..+++++.+++++|.+.+.+  
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~--  237 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--  237 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            6554322210                                            012345667778888888777763  


Q ss_pred             hhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          227 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                       ..+..+++|+.|++++|+++|. .|..++++++|++|+|++|+|+|+|
T Consensus       238 -~~~~~~~~L~~L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         238 -GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             -GGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             -cccccccccccccCccCeeccc-CChHHhCCCCCCEEECcCCcccccC
Confidence             2677889999999999999988 5668999999999999999999975

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.3e-20  Score=154.22  Aligned_cols=172  Identities=22%  Similarity=0.124  Sum_probs=119.1

Q ss_pred             cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140           90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL  163 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L  163 (275)
                      .++.|+|++|.|..+..      ..|+.|++++|+++. +|. ++.+++|++|++++|.++.  .+..+..+++|++|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-ccccccccccccccccccc--cccccccccccccccc
Confidence            46677777776654322      246666777776653 332 4566777777777777665  5556666777777777


Q ss_pred             CCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140          164 SRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       164 ~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~  243 (275)
                      ++|.+....+..+..+.++++|++++|.+....+..    +..+++++.+++++|++++.+  +..+..+++|++|+|++
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~----~~~l~~l~~l~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELP--AGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCEEECCS
T ss_pred             cccccceeeccccccccccccccccccccceecccc----ccccccchhcccccccccccC--ccccccccccceeeccc
Confidence            777766555555666677777777777665444333    667888899999999888875  34577888999999999


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      |+++.  .|..+..+++|+.|+|++|++..
T Consensus       182 N~L~~--lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         182 NSLYT--IPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCcc--cChhHCCCCCCCEEEecCCCCCC
Confidence            99884  34467788889999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-19  Score=149.93  Aligned_cols=173  Identities=25%  Similarity=0.236  Sum_probs=148.2

Q ss_pred             CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .+..+++.+++++..++.   .+++.|++++|.+++..+..|.++++|++|++++|.++.  +|. ++.+++|++|++++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCS
T ss_pred             CCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccc
Confidence            344556888877766533   478999999999998777789999999999999999986  654 57899999999999


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |+++ ..+..+..+++|++|++++|.+....+..    +..+.+++.|++++|.++..++  ..+..+++++.+++++|+
T Consensus        87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~l~~L~l~~n~l~~l~~--~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSC
T ss_pred             cccc-ccccccccccccccccccccccceeeccc----cccccccccccccccccceecc--ccccccccchhccccccc
Confidence            9998 56778899999999999999887655554    7889999999999999998853  456778999999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      +++. ++..+..+++|++|+|++|+|+
T Consensus       160 l~~~-~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         160 LTEL-PAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccc-CccccccccccceeecccCCCc
Confidence            9986 7778999999999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=9.3e-20  Score=154.76  Aligned_cols=162  Identities=23%  Similarity=0.256  Sum_probs=134.4

Q ss_pred             cccccccCCCCccee--ecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCC
Q 041140          107 FWLEDYKDETSKLIG--KINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQ  183 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~--~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~  183 (275)
                      .+++.|+++++++.|  .+|++++++++|++|++++ |.+++. +|..++++++|++|++++|++.+..+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhc
Confidence            468889999999987  6899999999999999986 889987 999999999999999999999988888899999999


Q ss_pred             eEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC-Cc-------------------------------------
Q 041140          184 YLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA-SD-------------------------------------  225 (275)
Q Consensus       184 ~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~-------------------------------------  225 (275)
                      +++++.|...+..|..    +.++++++.+++++|.+++. |.                                     
T Consensus       129 ~l~l~~N~~~~~~p~~----l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l  204 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL  204 (313)
T ss_dssp             EEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEEC
T ss_pred             ccccccccccccCchh----hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999877666655    77788888888887766543 11                                     


Q ss_pred             --------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140          226 --------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL  275 (275)
Q Consensus       226 --------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i  275 (275)
                              .+..+..+++++.+++++|.+.+. ++ .++.+++|++|++++|+|+|.|
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~-~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCB-GG-GCCCCTTCCEEECCSSCCEECC
T ss_pred             cccccccccccccccccccccccccccccccc-cc-ccccccccccccCccCeecccC
Confidence                    123344566778888888888776 44 5788899999999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-18  Score=141.69  Aligned_cols=176  Identities=19%  Similarity=0.104  Sum_probs=130.9

Q ss_pred             cEEEEEcCCCCCCCCCc------cccccccCCCCccee-------------------------ecCccccCCCCCCEEEC
Q 041140           90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIG-------------------------KINPSLLDLKHLVYLEL  138 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~-------------------------~lp~~l~~l~~L~~L~L  138 (275)
                      .++.|++++|.|..+..      .+|+.+++++|.+.+                         ..+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            46778888887655332      135555555554432                         23446777788888888


Q ss_pred             CCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCC
Q 041140          139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGV  218 (275)
Q Consensus       139 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n  218 (275)
                      ++|.+... .+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+.+..+..    +.++++|+.+++++|
T Consensus       113 ~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~----f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         113 DRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQN  187 (284)
T ss_dssp             TTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSS
T ss_pred             CCcccccc-cccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh----hccccccchhhhhhc
Confidence            88888764 5556777788888888888888554566778888888888888876554544    778888999999988


Q ss_pred             CCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          219 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       219 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++..  +..+..+++|++|++++|++.+. ++..+..+++|++|++++|++++
T Consensus       188 ~l~~i~--~~~f~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         188 RVAHVH--PHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCCEEC--TTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccC--hhHhhhhhhcccccccccccccc-cccccccccccCEEEecCCCCCC
Confidence            888763  34678888999999999999876 77788888999999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=6.1e-18  Score=142.80  Aligned_cols=71  Identities=21%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             CCcccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECC
Q 041140           75 NCCTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELS  139 (275)
Q Consensus        75 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls  139 (275)
                      .-|.|..+.|.+.         ...++.|++++|.+..++.      ..|+.+++++|.+....|..+.+++.|++|+++
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3478999999652         2568899999999876643      368888999999998778889999999999999


Q ss_pred             CCCCCC
Q 041140          140 NNNFEK  145 (275)
Q Consensus       140 ~n~l~~  145 (275)
                      +|+++.
T Consensus        88 ~n~l~~   93 (305)
T d1xkua_          88 KNQLKE   93 (305)
T ss_dssp             SSCCSB
T ss_pred             CCccCc
Confidence            887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-18  Score=142.78  Aligned_cols=135  Identities=20%  Similarity=0.139  Sum_probs=119.9

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      +|+.+++++|.+....+..+.....|+.+++++|.++.. .+..+..+++|++|++++|++++..+..+.++++|+++++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            577889999999877777788899999999999999985 5567889999999999999999766778899999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      ++|.+.+..+..    +.++++|++|++++|.+.+.+  +..+..+++|++|++++|.+...
T Consensus       185 ~~N~l~~i~~~~----f~~l~~L~~L~l~~N~i~~~~--~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         185 HQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCC--HHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhccccccChhH----hhhhhhccccccccccccccc--ccccccccccCEEEecCCCCCCC
Confidence            999998776666    899999999999999999985  45788999999999999999865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.6e-17  Score=129.15  Aligned_cols=156  Identities=24%  Similarity=0.297  Sum_probs=82.1

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      ..++.++++++.+.++..    .+|++|++++|++++..|  +.++++|++|++++|.+..  ++ .+.++++|++|+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECC
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccccccc--cc-cccccccccccccc
Confidence            457788888886655432    245555555555554322  5555555556555555544  33 24555555555555


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      +|.+.. + ..+..+++|++|++++|.+... + .    +..+++|+.|++.+|.+++.+    .++.+++|++|++++|
T Consensus       115 ~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~----l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         115 NNQITD-I-DPLKNLTNLNRLELSSNTISDI-S-A----LSGLTSLQQLNFSSNQVTDLK----PLANLTTLERLDISSN  182 (199)
T ss_dssp             SSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-G----GTTCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSS
T ss_pred             cccccc-c-cccchhhhhHHhhhhhhhhccc-c-c----ccccccccccccccccccCCc----cccCCCCCCEEECCCC
Confidence            555542 1 2344555555555555544321 1 1    445555555555555555543    2445555555666555


Q ss_pred             cCCCCCCCcccCCCCCcCEE
Q 041140          245 SLHNSLPELPIANFSSLYTL  264 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L  264 (275)
                      ++++.  + .++.+++|+.|
T Consensus       183 ~i~~i--~-~l~~L~~L~~L  199 (199)
T d2omxa2         183 KVSDI--S-VLAKLTNLESL  199 (199)
T ss_dssp             CCCCC--G-GGGGCTTCSEE
T ss_pred             CCCCC--c-cccCCCCCCcC
Confidence            55542  1 24555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.1e-17  Score=128.83  Aligned_cols=159  Identities=23%  Similarity=0.225  Sum_probs=131.8

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.++++++.+.++..    .+|+.|++++|.+++. + .++.+++|++|++++|.++.  +| .+..+++|+.|++++
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc--cc-ccccccccccccccc
Confidence            57888999988776543    3688899999999863 3 37889999999999999987  66 588899999999999


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |.+. .+ ..+..+++++.+++++|.+.+..  .    +..+++|+.+++++|.+++.+    .+..+++|+.|++++|+
T Consensus       122 ~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~--~----~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         122 NGIS-DI-NGLVHLPQLESLYLGNNKITDIT--V----LSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             SCCC-CC-GGGGGCTTCCEEECCSSCCCCCG--G----GGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSC
T ss_pred             cccc-cc-ccccccccccccccccccccccc--c----ccccccccccccccccccccc----cccCCCCCCEEECCCCC
Confidence            9987 34 45788999999999999876432  2    677899999999999998864    36789999999999999


Q ss_pred             CCCCCCCcccCCCCCcCEEeccc
Q 041140          246 LHNSLPELPIANFSSLYTLDLSY  268 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~  268 (275)
                      +++.  + .+..+++|++|+|++
T Consensus       190 i~~l--~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 ISDL--R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCBC--G-GGTTCTTCSEEEEEE
T ss_pred             CCCC--h-hhcCCCCCCEEEccC
Confidence            9863  3 589999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.5e-16  Score=124.79  Aligned_cols=146  Identities=26%  Similarity=0.341  Sum_probs=124.1

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .++.|++++|++.. + +.+..+++|++|++++|.+++  +++ ++++++|++|++++|.+. .++ .+..+++|++|++
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            57788899998874 3 347889999999999999998  444 899999999999999987 455 4889999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|......  .    +..+++|+.+++++|.+...+    .+..+++|+.|++.+|++++. +  .++.+++|++|+++
T Consensus       114 ~~~~~~~~~--~----~~~l~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l-~--~l~~l~~L~~L~ls  180 (199)
T d2omxa2         114 FNNQITDID--P----LKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDL-K--PLANLTTLERLDIS  180 (199)
T ss_dssp             CSSCCCCCG--G----GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC-G--GGTTCTTCCEEECC
T ss_pred             ccccccccc--c----cchhhhhHHhhhhhhhhcccc----cccccccccccccccccccCC-c--cccCCCCCCEEECC
Confidence            998775432  1    778999999999999998764    467889999999999999874 3  48999999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|++++
T Consensus       181 ~N~i~~  186 (199)
T d2omxa2         181 SNKVSD  186 (199)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.7e-17  Score=130.94  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=119.6

Q ss_pred             cccccccCCCCcceeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeE
Q 041140          107 FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL  185 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L  185 (275)
                      .+++.|++++|.+++.++. .+.++++|++|++++|.+... .+..+..+++|++|++++|++....|..|.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            4778888899999876644 578899999999999999886 77788889999999999999996556678899999999


Q ss_pred             EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEe
Q 041140          186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLD  265 (275)
Q Consensus       186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  265 (275)
                      +|++|.+++..+..    +..+++|+++++++|.+....... .+.  ..++.+.+..+.+... .|   ..+..++.++
T Consensus       108 ~L~~N~l~~i~~~~----f~~l~~L~~l~L~~N~~~~~~~~~-~~~--~~l~~~~l~~~~~~c~-~p---~~l~~~~l~~  176 (192)
T d1w8aa_         108 NLYDNQISCVMPGS----FEHLNSLTSLNLASNPFNCNCHLA-WFA--EWLRKKSLNGGAARCG-AP---SKVRDVQIKD  176 (192)
T ss_dssp             ECCSSCCCEECTTS----STTCTTCCEEECTTCCBCCSGGGH-HHH--HHHHHHCCSGGGCBBC-SS---TTTTTSBGGG
T ss_pred             ccCCccccccCHHH----hcCCcccccccccccccccccchH-HHh--hhhhhhcccCCCeEeC-CC---hhhcCCEeee
Confidence            99999988766655    788999999999999988764322 211  2345556666766654 23   3456677788


Q ss_pred             cccCcCce
Q 041140          266 LSYNEFDN  273 (275)
Q Consensus       266 L~~N~l~g  273 (275)
                      ++.|.|+.
T Consensus       177 L~~n~l~C  184 (192)
T d1w8aa_         177 LPHSEFKC  184 (192)
T ss_dssp             SCTTTCCC
T ss_pred             cCHhhCcC
Confidence            88888753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.1e-16  Score=125.32  Aligned_cols=146  Identities=21%  Similarity=0.260  Sum_probs=123.1

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL  187 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L  187 (275)
                      .++.+++++|.+... + .+..+++|++|++++|.+++  ++ .++.+++|++|++++|+++ .+| .+..+++|+.|++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            467788999988753 3 47889999999999999998  55 3688999999999999998 455 5889999999999


Q ss_pred             ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                      ++|.+...      ..+..+++++.+++++|.+++.+    .+..+++|+.+++++|++++. +  .+..+++|++|+++
T Consensus       120 ~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i-~--~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         120 EHNGISDI------NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI-V--PLAGLTKLQNLYLS  186 (210)
T ss_dssp             TTSCCCCC------GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCC-G--GGTTCTTCCEEECC
T ss_pred             cccccccc------ccccccccccccccccccccccc----ccccccccccccccccccccc-c--cccCCCCCCEEECC
Confidence            99976532      22788999999999999998864    345689999999999999874 3  38899999999999


Q ss_pred             cCcCce
Q 041140          268 YNEFDN  273 (275)
Q Consensus       268 ~N~l~g  273 (275)
                      +|+++.
T Consensus       187 ~N~i~~  192 (210)
T d1h6ta2         187 KNHISD  192 (210)
T ss_dssp             SSCCCB
T ss_pred             CCCCCC
Confidence            999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.2e-16  Score=125.92  Aligned_cols=131  Identities=22%  Similarity=0.242  Sum_probs=101.8

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS  189 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~  189 (275)
                      ++++.++++++ .+|+.+.  +++++|+|++|.|+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45677788877 5776553  67888888888887642455678888888888888888877777888888888888888


Q ss_pred             CCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140          190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS  249 (275)
Q Consensus       190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (275)
                      |.+....+..    |.++++|++|+|++|++++.+  +..+..+++|++++|++|.+...
T Consensus        88 N~l~~l~~~~----F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          88 NKIKEISNKM----FLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSS----STTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccCHHH----HhCCCcccccccCCccccccC--HHHhcCCcccccccccccccccc
Confidence            8887655554    788888888888888888874  34567788888888888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.6e-16  Score=133.98  Aligned_cols=160  Identities=22%  Similarity=0.257  Sum_probs=99.9

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.+++++|.+.++..    ..++.+++++|.+++..+  +..+++|++|+++++.+++  ++ .+..++.++.+.+..
T Consensus       220 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~--~~-~~~~~~~l~~l~~~~  294 (384)
T d2omza2         220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--IS-PLAGLTALTNLELNE  294 (384)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCS
T ss_pred             CCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCC--CC-ccccccccccccccc
Confidence            44555555555544432    234555555555554332  4555556666666555554  22 244555556666665


Q ss_pred             CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140          166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS  245 (275)
Q Consensus       166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~  245 (275)
                      |.+.+  +..+..++++++|++++|.+.+..+      +..+++|++|++++|++++.+    .+..+++|++|++++|+
T Consensus       295 n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~------l~~l~~L~~L~L~~n~l~~l~----~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         295 NQLED--ISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSDVS----SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             SCCSC--CGGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSC
T ss_pred             ccccc--ccccchhcccCeEECCCCCCCCCcc------cccCCCCCEEECCCCCCCCCh----hHcCCCCCCEEECCCCc
Confidence            55553  2345667777777777777654321      567788888888888887764    35667888888888888


Q ss_pred             CCCCCCCcccCCCCCcCEEecccC
Q 041140          246 LHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       246 l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      +++. ++  +.++++|+.|++++|
T Consensus       363 l~~l-~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         363 ISDL-TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCBC-GG--GTTCTTCSEEECCCE
T ss_pred             CCCC-hh--hccCCCCCEeeCCCC
Confidence            8764 43  778888888888877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2e-15  Score=121.87  Aligned_cols=160  Identities=24%  Similarity=0.326  Sum_probs=85.1

Q ss_pred             cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140           90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR  165 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~  165 (275)
                      .++.+++.++.+.+++.    .+|+.+++++|.+++..|  +.++++++++++++|.++.  ++ .+..+++|+++++++
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTT
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc--cc-ccccccccccccccc
Confidence            46677777776665543    256667777777665433  6667777777777776665  33 356677777777776


Q ss_pred             CCCCCCCc--------------------ccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc
Q 041140          166 AEFTGMIP--------------------YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD  225 (275)
Q Consensus       166 n~l~~~lp--------------------~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~  225 (275)
                      +...+..+                    ..+..+++|++|++++|.+.+..+      +.++++|+.|++++|.+++.+ 
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~Ls~n~l~~l~-  189 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDIS-  189 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCG-
T ss_pred             ccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh------hcccccceecccCCCccCCCh-
Confidence            66553211                    123334444444444443322111      344555555555555554432 


Q ss_pred             hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140          226 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS  267 (275)
Q Consensus       226 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  267 (275)
                         .+..+++|++|++++|++++. +  .+.++++|+.|+++
T Consensus       190 ---~l~~l~~L~~L~Ls~N~lt~i-~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         190 ---PLASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLT  225 (227)
T ss_dssp             ---GGGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEE
T ss_pred             ---hhcCCCCCCEEECcCCcCCCC-c--ccccCCCCCEEEee
Confidence               133445555555555555442 2  24455555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.5e-16  Score=113.92  Aligned_cols=120  Identities=23%  Similarity=0.262  Sum_probs=73.8

Q ss_pred             CEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCee
Q 041140          134 VYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHL  213 (275)
Q Consensus       134 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L  213 (275)
                      |+|++++|+++.  ++ .+..+++|++|++++|+++ .+|+.++.+++|++|++++|.+.+. + .    +..+++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~----~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-G----VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-G----GTTCSSCCEE
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-c----cccccccCeE
Confidence            456677777765  44 3566667777777777776 5666666677777777777766532 1 1    5666777777


Q ss_pred             eccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC--CCCcccCCCCCcCEE
Q 041140          214 DLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS--LPELPIANFSSLYTL  264 (275)
Q Consensus       214 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L  264 (275)
                      ++++|+++..+. ...+..+++|+.+++++|++++.  ........+|+|+.+
T Consensus        71 ~l~~N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCC-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            777777766643 23456667777777777776543  122233445666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-16  Score=122.05  Aligned_cols=131  Identities=18%  Similarity=0.108  Sum_probs=108.2

Q ss_pred             ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      +.+...+++|++++|.|+.  ++..+..+++|++|++++|+++ .++ .+..+++|++|++++|.+....+..    +..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~----~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGL----DQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCH----HHH
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccc----ccc
Confidence            5678889999999999988  6776788999999999999998 554 5889999999999999987544332    567


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEecc
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLS  267 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~  267 (275)
                      +++|++|++++|.++..++ ...+..+++|+++++++|.++.. +.   ..+..+++|++||..
T Consensus        86 l~~L~~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccceecccccccccc-ccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeCCC
Confidence            8999999999999998764 34678899999999999999765 32   347889999999843

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.1e-14  Score=122.52  Aligned_cols=137  Identities=20%  Similarity=0.166  Sum_probs=112.1

Q ss_pred             CccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccc
Q 041140          124 NPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSW  203 (275)
Q Consensus       124 p~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~  203 (275)
                      +..+..++.|+++++++|.+..  +|..  .+++|++|++++|...+..+..+..++.+++|++++|.+.+..+..    
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~--l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~----  214 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITT--IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS----  214 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS--CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT----
T ss_pred             ccccccccccCccccccCCccc--cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc----
Confidence            3456678889999999998876  5544  3678999999999998888888999999999999999887665554    


Q ss_pred             ccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc------ccCCCCCcCEEecccCcCc
Q 041140          204 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL------PIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       204 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~l~~l~~L~~L~L~~N~l~  272 (275)
                      +.++++|++|++++|.++..|.   .+..+++|+.|+|++|+++.. ...      ......+|+.|++++|+++
T Consensus       215 ~~~l~~L~~L~L~~N~L~~lp~---~l~~l~~L~~L~Ls~N~i~~i-~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCT---TTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccceeeeccccccccccc---ccccccCCCEEECCCCccCcc-ChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7889999999999999998753   678899999999999999864 332      3446678999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=9.6e-15  Score=126.07  Aligned_cols=165  Identities=24%  Similarity=0.282  Sum_probs=125.2

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS  164 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~  164 (275)
                      .....++++++.+.+..+    ..++.+++++|.++. + +.+..+++|+.+++++|.+++  ++ .+..+++|++|+++
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~--~~-~~~~~~~L~~L~l~  271 (384)
T d2omza2         197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN--LA-PLSGLTKLTELKLG  271 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECC
T ss_pred             cccceeeccCCccCCCCcccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCC--CC-cccccccCCEeecc
Confidence            345677777777666543    356777778877764 2 346777888888888888776  33 36677888888888


Q ss_pred             CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140          165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      ++++.+ ++ .+..++.++.+++..|.+.+..      .+..+++++.|++++|++++.+    .+..+++|+.|++++|
T Consensus       272 ~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~ls~n~l~~l~----~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         272 ANQISN-IS-PLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDIS----PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             SSCCCC-CG-GGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCSCCG----GGGGCTTCCEEECCSS
T ss_pred             CcccCC-CC-cccccccccccccccccccccc------ccchhcccCeEECCCCCCCCCc----ccccCCCCCEEECCCC
Confidence            888774 33 3667778888888877665421      2678889999999999999875    3567899999999999


Q ss_pred             cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140          245 SLHNSLPELPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      ++++.  + .+..+++|++|++++|+|++
T Consensus       340 ~l~~l--~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         340 KVSDV--S-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCCCC--G-GGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCC--h-hHcCCCCCCEEECCCCcCCC
Confidence            99873  3 58999999999999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.9e-15  Score=110.55  Aligned_cols=120  Identities=23%  Similarity=0.244  Sum_probs=95.3

Q ss_pred             cccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140          111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ  190 (275)
Q Consensus       111 ~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n  190 (275)
                      .|++++|+++ .++ .+..+++|++|++++|.++.  +|+.+..+++|++|++++|.++ .+| .+..+++|++|++++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            4566777887 344 48899999999999999987  8888999999999999999998 565 5899999999999999


Q ss_pred             CCCCcccccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEE
Q 041140          191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVL  239 (275)
Q Consensus       191 ~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L  239 (275)
                      .+.......   .+..+++|+.+++++|.++..+... .....+|+|+.+
T Consensus        76 ~i~~~~~~~---~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQ---PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTG---GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCch---hhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            987553321   2788999999999999998664322 223446777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=3.2e-14  Score=114.67  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC------------------
Q 041140           89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA------------------  146 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~------------------  146 (275)
                      ..++.+++++|.+.++.+    ..++.+++++|.++. ++ .+.++++|+.++++++...+.                  
T Consensus        63 ~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCcEeecCCceeeccccccccccccccccccccccc-cc-cccccccccccccccccccccchhccccchhhhhchhhh
Confidence            578899999988877544    256677777777753 33 467778888888877765442                  


Q ss_pred             -CcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc
Q 041140          147 -QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD  225 (275)
Q Consensus       147 -~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~  225 (275)
                       .....+..+++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+..      .+.++++|++|++++|++++.+ 
T Consensus       141 ~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~lt~i~-  211 (227)
T d1h6ua2         141 ITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNNQISDVS-  211 (227)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECTTSCCCBCG-
T ss_pred             hchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCCh------hhcCCCCCCEEECcCCcCCCCc-
Confidence             0112356678899999999998743  34889999999999999886532      2788999999999999999875 


Q ss_pred             hhhhhCCCCCCcEEeccC
Q 041140          226 WFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       226 ~~~~~~~l~~L~~L~L~~  243 (275)
                         .++.+++|+.|++++
T Consensus       212 ---~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 ---PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ---GGTTCTTCCEEEEEE
T ss_pred             ---ccccCCCCCEEEeeC
Confidence               367899999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-14  Score=109.66  Aligned_cols=124  Identities=18%  Similarity=0.173  Sum_probs=92.8

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc-cccCCCCCCeEEcc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY-QLGNLSNLQYLDLS  188 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~-~l~~l~~L~~L~Ls  188 (275)
                      +.|++++|+++. ++..+..+++|+.|++++|.++.  ++ .+..+++|++|++++|+++. +|. .+..+++|++|+++
T Consensus        21 r~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          21 RELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILT   95 (162)
T ss_dssp             EEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECC
T ss_pred             cEEECCCCCCCc-cCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccC-CCccccccccccccceec
Confidence            334444447654 45545678999999999999987  54 47889999999999999984 544 45679999999999


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCch-hhhhCCCCCCcEEec
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW-FLVTNMLPSLQVLKL  241 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L  241 (275)
                      +|.+.....   +..+..+++|+++++++|.++..+.+ ...+..+|+|+.||-
T Consensus        96 ~N~i~~~~~---l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          96 NNSLVELGD---LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             SCCCCCGGG---GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccc---ccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            998865432   22278899999999999999877542 234667899998873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=108.83  Aligned_cols=161  Identities=18%  Similarity=0.126  Sum_probs=81.1

Q ss_pred             ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC-CCCCCCCcccccCCCCCCeEE
Q 041140          108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLGNLSNLQYLD  186 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~~l~~l~~L~~L~  186 (275)
                      +++.|++++|.++...+..|.++++|++|++++|.+....-+..+..+++++++.+.. |.+....+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4455555555554333334555555666666555554420122344555555555432 344433334455555555555


Q ss_pred             cccCCCCCccccccc---------------------ccccCC-CCCCeeeccCCCCCCCCchhhhhCCCCCCcEE-eccC
Q 041140          187 LSSQIPLSFLYLENL---------------------SWLSGL-SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL-KLSA  243 (275)
Q Consensus       187 Ls~n~~~~~~~~~~l---------------------~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L-~L~~  243 (275)
                      +++|.+....+...+                     ..+..+ ..++.+++++|.++..+.   .....+++..+ ++++
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~---~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---CAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT---TTTTTCCEEEEECTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---ccccchhhhccccccc
Confidence            555544322111000                     012222 256667777777765532   22223444444 4566


Q ss_pred             CcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140          244 CSLHNSLPELPIANFSSLYTLDLSYNEFD  272 (275)
Q Consensus       244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~  272 (275)
                      |+++.. ++..|..+++|++|++++|+|+
T Consensus       187 n~l~~l-~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         187 NNLEEL-PNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TTCCCC-CTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccc-cHHHhcCCCCCCEEECCCCcCC
Confidence            666654 5556777777888888777775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=2.7e-16  Score=124.56  Aligned_cols=132  Identities=26%  Similarity=0.229  Sum_probs=105.9

Q ss_pred             cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccc
Q 041140          123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLS  202 (275)
Q Consensus       123 lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  202 (275)
                      +|.++..+++|++|++++|.++.  ++ .+..+++|++|++++|.+. .+|.....+++|++|++++|.+...      .
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l------~  109 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL------S  109 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH------H
T ss_pred             hhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc------c
Confidence            44567889999999999999987  54 5888999999999999998 6776666667899999999988643      1


Q ss_pred             cccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc----------ccCCCCCcCEEec
Q 041140          203 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL----------PIANFSSLYTLDL  266 (275)
Q Consensus       203 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~l~~l~~L~~L~L  266 (275)
                      .+..+++|+.|++++|.++..+. ...+..+++|+.|++++|.+... .+.          .+..+++|+.||-
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHHHH-HCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccccccccccccccchhccccc-cccccCCCccceeecCCCccccC-cccccchhhHHHHHHHHCCCcCEeCC
Confidence            26788899999999999988753 34678899999999999988654 221          1567899999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=6.9e-12  Score=106.24  Aligned_cols=74  Identities=27%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             CcEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140           89 GHVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA  166 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n  166 (275)
                      .+++.|++++|.+..++.  .+|+.|++++|+++. ++. +  .+.|++|++++|.++.  +|. +..+++|++|+++++
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCcccccchhhhhhhhhhhcccch-hhh-h--cccccccccccccccc--ccc-hhhhccceeeccccc
Confidence            468888888888877654  368888888888762 332 1  2468999999999887  664 578899999999887


Q ss_pred             CCC
Q 041140          167 EFT  169 (275)
Q Consensus       167 ~l~  169 (275)
                      .+.
T Consensus       131 ~~~  133 (353)
T d1jl5a_         131 SLK  133 (353)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.2e-13  Score=107.33  Aligned_cols=184  Identities=16%  Similarity=0.136  Sum_probs=124.8

Q ss_pred             cccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCc-cccCCCCCCEEECCC
Q 041140           77 CTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSN  140 (275)
Q Consensus        77 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~  140 (275)
                      |....+.|...         ...+++|++++|.+..+..      .+|+.+++++|.+...++. .+.+++.++++.+..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666777532         1368899999998865432      3688899999998877655 577889999988754


Q ss_pred             -CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc-cccCCC-------------------------CCCeEEcccCCCC
Q 041140          141 -NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY-QLGNLS-------------------------NLQYLDLSSQIPL  193 (275)
Q Consensus       141 -n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~-~l~~l~-------------------------~L~~L~Ls~n~~~  193 (275)
                       |.+... .+..+..+++|+++++++|.+...-+. .+..+.                         .++.|++++|.+.
T Consensus        88 ~n~l~~~-~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEE-CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccc-ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             667664 556678899999999999887632111 111222                         3444444444443


Q ss_pred             CcccccccccccCCCCCCee-eccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140          194 SFLYLENLSWLSGLSLLKHL-DLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       194 ~~~~~~~l~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      .... .    .....+++.+ .+++|.++..+.  ..+..+++|+.|++++|+++.. ++..+.++++|+.+++.+.
T Consensus       167 ~i~~-~----~~~~~~l~~~~~l~~n~l~~l~~--~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         167 EIHN-C----AFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             EECT-T----TTTTCCEEEEECTTCTTCCCCCT--TTTTTSCCCSEEECTTSCCCCC-CSSSCTTCCEEESSSEESS
T ss_pred             cccc-c----cccchhhhccccccccccccccH--HHhcCCCCCCEEECCCCcCCcc-CHHHHcCCcccccCcCCCC
Confidence            2111 1    2334455544 567888988753  3578899999999999999865 7777888888888777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=3.2e-14  Score=112.38  Aligned_cols=131  Identities=21%  Similarity=0.183  Sum_probs=101.7

Q ss_pred             CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140          131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL  210 (275)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L  210 (275)
                      ..++.++++.+.-.-..++..+..+++|++|++++|+++ .++ .+..+++|++|++++|.+... +..    ...+++|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i-~~~----~~~~~~L   95 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKI-ENL----DAVADTL   95 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSC-SSH----HHHHHHC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccc-ccc----ccccccc
Confidence            345566666542211227889999999999999999998 565 588999999999999987643 221    3445689


Q ss_pred             CeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC-cccCCCCCcCEEecccCcCce
Q 041140          211 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       211 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~N~l~g  273 (275)
                      +.|++++|.++..+    .+..+++|+.|++++|++++. .. ..+..+++|+.|++++|+++.
T Consensus        96 ~~L~l~~N~i~~l~----~~~~l~~L~~L~L~~N~i~~~-~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          96 EELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CEEECSEEECCCHH----HHHHHHHSSEEEESEEECCCH-HHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccc----cccccccccccccccchhccc-cccccccCCCccceeecCCCcccc
Confidence            99999999998753    355678999999999999874 22 468899999999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.5e-13  Score=111.56  Aligned_cols=175  Identities=25%  Similarity=0.218  Sum_probs=123.3

Q ss_pred             CcEEEEEcCCCCCCCC------C-ccccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCE
Q 041140           89 GHVLELRLGNPFLHDD------E-PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRH  160 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l------~-~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~  160 (275)
                      .+++++|++++.+...      . -.+|++|++.++.+++..+..++++++|++|+++++ .+++..+......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4688999998875531      1 147888899999988888888889999999999985 5664324444567899999


Q ss_pred             EECCCCC-CCCC-Cccccc-CCCCCCeEEcccCC--CCCcccccccccccCCCCCCeeeccCCC-CCCCCchhhhhCCCC
Q 041140          161 IDLSRAE-FTGM-IPYQLG-NLSNLQYLDLSSQI--PLSFLYLENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLP  234 (275)
Q Consensus       161 L~L~~n~-l~~~-lp~~l~-~l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~  234 (275)
                      |+++++. ++.. +...+. ..++|+.|+++++.  +.......   ...++++|++|++++|. +++.  .+..+.+++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~---l~~~~~~L~~L~L~~~~~itd~--~~~~l~~~~  200 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSDSVMLKND--CFQEFFQLN  200 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTTCTTCCGG--GGGGGGGCT
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccc---cccccccccccccccccCCCch--hhhhhcccC
Confidence            9999864 4321 222233 35789999998752  22111111   13568899999999875 5543  244667789


Q ss_pred             CCcEEeccCC-cCCCCCCCcccCCCCCcCEEecccC
Q 041140          235 SLQVLKLSAC-SLHNSLPELPIANFSSLYTLDLSYN  269 (275)
Q Consensus       235 ~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~N  269 (275)
                      +|++|++++| .+++. ....++++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~-~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChH-HHHHHhcCCCCCEEeeeCC
Confidence            9999999996 67665 3446788999999999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.8e-11  Score=91.46  Aligned_cols=107  Identities=18%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             ccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140          110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS  188 (275)
Q Consensus       110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls  188 (275)
                      +.++..++++. .+|..+..+++|++|++++| .++.. -+..|.++++|+.|++++|+++..-|..+..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34555666665 35666777888888888655 47764 44567788888888888888885556667888888888888


Q ss_pred             cCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140          189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      +|.+....+..    + ...+|++|++++|.+.-.
T Consensus        89 ~N~l~~l~~~~----~-~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          89 FNALESLSWKT----V-QGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             SSCCSCCCSTT----T-CSCCCCEEECCSSCCCCC
T ss_pred             CCCCcccChhh----h-ccccccccccCCCcccCC
Confidence            88776433322    3 333688888888887644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-11  Score=92.14  Aligned_cols=111  Identities=18%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             cCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC-CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140          128 LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE-FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG  206 (275)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  206 (275)
                      ......+.++.+++.+..  .|..+..+++|++|++++|+ ++..-+..|..+++|+.|++++|.+....+..    +..
T Consensus         5 C~c~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~   78 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHF   78 (156)
T ss_dssp             SCCSSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG----GGS
T ss_pred             CCcCCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc----ccc
Confidence            344556678888888877  77888889999999997664 76444457888999999999999887665555    888


Q ss_pred             CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCC
Q 041140          207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH  247 (275)
Q Consensus       207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  247 (275)
                      +++|++|+|++|+++..+.  ..+. ..+|+.|+|++|.+.
T Consensus        79 l~~L~~L~Ls~N~l~~l~~--~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSW--KTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCS--TTTC-SCCCCEEECCSSCCC
T ss_pred             cccccceeccCCCCcccCh--hhhc-cccccccccCCCccc
Confidence            8999999999999988753  2333 346889999999885

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-12  Score=106.90  Aligned_cols=164  Identities=20%  Similarity=0.167  Sum_probs=117.9

Q ss_pred             CCccccccccCCCCcceee-cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC-CCCCC-CcccccCCC
Q 041140          104 DEPFWLEDYKDETSKLIGK-INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA-EFTGM-IPYQLGNLS  180 (275)
Q Consensus       104 l~~~~L~~l~l~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~-lp~~l~~l~  180 (275)
                      .....|++|+++++.++.. ++..+..+++|++|+++++.+++. .+..+..+++|++|+++++ .++.. +..-...++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            3445788999999888755 344567899999999999998876 7788899999999999986 45421 222235689


Q ss_pred             CCCeEEcccCC-CCCcccccccccc-cCCCCCCeeeccCCC--CCCCCchhhhhCCCCCCcEEeccCC-cCCCCCCCccc
Q 041140          181 NLQYLDLSSQI-PLSFLYLENLSWL-SGLSLLKHLDLTGVD--LSTASDWFLVTNMLPSLQVLKLSAC-SLHNSLPELPI  255 (275)
Q Consensus       181 ~L~~L~Ls~n~-~~~~~~~~~l~~l-~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l  255 (275)
                      +|++|+++++. +.......   .+ ...++|+.|+++++.  ++... +......+++|++|++++| .+++. ....+
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~itd~-~~~~l  196 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVMLKND-CFQEF  196 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTCCGG-GGGGG
T ss_pred             hccccccccccccccccchh---hhcccccccchhhhccccccccccc-ccccccccccccccccccccCCCch-hhhhh
Confidence            99999999863 32211111   12 335789999998753  33321 3334466899999999987 56766 44578


Q ss_pred             CCCCCcCEEecccC-cCce
Q 041140          256 ANFSSLYTLDLSYN-EFDN  273 (275)
Q Consensus       256 ~~l~~L~~L~L~~N-~l~g  273 (275)
                      .++++|++|+++++ .+++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCG
T ss_pred             cccCcCCEEECCCCCCCCh
Confidence            89999999999994 5654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=2e-12  Score=110.21  Aligned_cols=185  Identities=17%  Similarity=0.097  Sum_probs=129.6

Q ss_pred             CcEEEEEcCCCCCCCCCc----------cccccccCCCCcceeecCc-------------cccCCCCCCEEECCCCCCCC
Q 041140           89 GHVLELRLGNPFLHDDEP----------FWLEDYKDETSKLIGKINP-------------SLLDLKHLVYLELSNNNFEK  145 (275)
Q Consensus        89 ~~v~~l~l~~~~~~~l~~----------~~L~~l~l~~n~l~~~lp~-------------~l~~l~~L~~L~Ls~n~l~~  145 (275)
                      .+++.+++++|.++....          ..|+.+++++|.+...-..             .....+.|+.+.+++|.++.
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            568899999998876422          3678888988887532111             11356789999999998875


Q ss_pred             C---CcchhhhCCccCCEEECCCCCCCCC-----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccC
Q 041140          146 A---QLPVFLGSMGSLRHIDLSRAEFTGM-----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG  217 (275)
Q Consensus       146 ~---~~p~~~~~l~~L~~L~L~~n~l~~~-----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~  217 (275)
                      .   .+...+...++|++|++++|.+...     +...+..+++|++|++++|.+...........+...++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            3   1334466788999999999998732     3345677899999999999765332222122367889999999999


Q ss_pred             CCCCCC--CchhhhhC--CCCCCcEEeccCCcCCCCC---CCccc-CCCCCcCEEecccCcCce
Q 041140          218 VDLSTA--SDWFLVTN--MLPSLQVLKLSACSLHNSL---PELPI-ANFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       218 n~l~~~--~~~~~~~~--~l~~L~~L~L~~n~l~~~~---~~~~l-~~l~~L~~L~L~~N~l~g  273 (275)
                      |.+++.  ..+...+.  ..+.|++|++++|+++...   ....+ .++++|++|++++|.|..
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            998865  22333333  3467999999999987541   11223 257889999999999854

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=7.8e-12  Score=106.51  Aligned_cols=165  Identities=20%  Similarity=0.104  Sum_probs=96.6

Q ss_pred             ccccccCCCCcceee----cCccccCCCCCCEEECCCCCCCCCCcch-------------hhhCCccCCEEECCCCCCCC
Q 041140          108 WLEDYKDETSKLIGK----INPSLLDLKHLVYLELSNNNFEKAQLPV-------------FLGSMGSLRHIDLSRAEFTG  170 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-------------~~~~l~~L~~L~L~~n~l~~  170 (275)
                      .|+.|++++|.+...    +...+...++|+.|++++|.+... -..             .....+.|+.+.+++|.+..
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             Ccccccccccccccccccchhhhhcccccchheeccccccccc-ccccccccccccccccccccCcccceeecccccccc
Confidence            455566666655432    223334456666666666655321 000             11234556666666666542


Q ss_pred             C----CcccccCCCCCCeEEcccCCCCCccccc-ccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEeccC
Q 041140          171 M----IPYQLGNLSNLQYLDLSSQIPLSFLYLE-NLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       171 ~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~  243 (275)
                      .    +...+...+.|++|++++|.+....... ....+..+++|+.|++++|.++..  ..+...+...++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            2    2223455678888888888765321111 111256778899999998887643  22345667788899999999


Q ss_pred             CcCCCCCCC---cccC--CCCCcCEEecccCcCce
Q 041140          244 CSLHNSLPE---LPIA--NFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       244 n~l~~~~~~---~~l~--~l~~L~~L~L~~N~l~g  273 (275)
                      |.+++....   ..+.  ..+.|++|++++|+++.
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            988764111   1222  23578999999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.04  E-value=3.4e-09  Score=89.14  Aligned_cols=136  Identities=21%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             cEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140           90 HVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE  167 (275)
Q Consensus        90 ~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~  167 (275)
                      ++++||++++.++.++.  .+|++|++++|+++ .+|..   +.+|+.|++++|.++.  ++..   .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch--hhhh---ccccccccccccc
Confidence            46788998886655443  25666666666665 45543   3456666666666654  3321   1346666666666


Q ss_pred             CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCC
Q 041140          168 FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH  247 (275)
Q Consensus       168 l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  247 (275)
                      +. .+|. ++.+++|++|+++++.+....        .....+..+.+..+......    .+..++.++.+++++|.+.
T Consensus       110 l~-~lp~-~~~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~~~~~~~~~~----~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         110 LE-KLPE-LQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCS
T ss_pred             cc-cccc-hhhhccceeeccccccccccc--------cccccccchhhccccccccc----cccccccceeccccccccc
Confidence            65 4553 456666666666666543221        12234455555544443332    2345566777777776655


Q ss_pred             C
Q 041140          248 N  248 (275)
Q Consensus       248 ~  248 (275)
                      .
T Consensus       176 ~  176 (353)
T d1jl5a_         176 K  176 (353)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.2e-10  Score=98.90  Aligned_cols=165  Identities=20%  Similarity=0.022  Sum_probs=94.8

Q ss_pred             ccccccCCCCcceee----cCccccCCCCCCEEECCCCCCCCCCcchh----hh-CCccCCEEECCCCCCCCCCcc----
Q 041140          108 WLEDYKDETSKLIGK----INPSLLDLKHLVYLELSNNNFEKAQLPVF----LG-SMGSLRHIDLSRAEFTGMIPY----  174 (275)
Q Consensus       108 ~L~~l~l~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~----~~-~l~~L~~L~L~~n~l~~~lp~----  174 (275)
                      .++.+++++|.+...    +...+...+.++.+++++|.++.. ....    +. ....|+.+++++|.++.....    
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~-~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-ccchhhccccccccccccccccccchhhhhhhhccc
Confidence            455566666665532    222344566777777777776542 1111    11 234677888887777643222    


Q ss_pred             cccCCCCCCeEEcccCCCCCccccccccccc-CCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEeccCCcCCCCCC
Q 041140          175 QLGNLSNLQYLDLSSQIPLSFLYLENLSWLS-GLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLP  251 (275)
Q Consensus       175 ~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~  251 (275)
                      .+...++|++|++++|.+.+.........+. ..+.|++|++++|.++..  ..+...+...++|++|++++|++++...
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence            2344567888888887764322211111122 355688888888887654  2233445566788888888888765311


Q ss_pred             C---cccC-CCCCcCEEecccCcCce
Q 041140          252 E---LPIA-NFSSLYTLDLSYNEFDN  273 (275)
Q Consensus       252 ~---~~l~-~l~~L~~L~L~~N~l~g  273 (275)
                      .   ..+. ....|+.|++.+|.+..
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCH
Confidence            1   1122 33468888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.9e-09  Score=93.89  Aligned_cols=117  Identities=18%  Similarity=0.108  Sum_probs=72.4

Q ss_pred             cccccccCCCCcceeec-CccccCCCCCCEEECCCCCCCCC---CcchhhhCCccCCEEECCCCCCCCC----Cccccc-
Q 041140          107 FWLEDYKDETSKLIGKI-NPSLLDLKHLVYLELSNNNFEKA---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLG-  177 (275)
Q Consensus       107 ~~L~~l~l~~n~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~-  177 (275)
                      .+|+.|++++|++++.- .+-+..++++++|+|++|.++..   .+...+..+++|++|++++|.++..    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35677788888877532 22344567788888888877642   1345566778888888888877521    222222 


Q ss_pred             CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140          178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA  223 (275)
Q Consensus       178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~  223 (275)
                      ...+|++|++++|.+++.........+..+++|++|++++|.+...
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            2346888888888765432211112256677888888888877643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.1e-09  Score=80.38  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=17.9

Q ss_pred             CCccCCEEECCCCCCCCC--CcccccCCCCCCeEEcccCCCC
Q 041140          154 SMGSLRHIDLSRAEFTGM--IPYQLGNLSNLQYLDLSSQIPL  193 (275)
Q Consensus       154 ~l~~L~~L~L~~n~l~~~--lp~~l~~l~~L~~L~Ls~n~~~  193 (275)
                      .+++|++|++++|+++..  ++..+..+++|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            445555555555555421  1122334444555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.7e-09  Score=77.58  Aligned_cols=84  Identities=25%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC----
Q 041140          177 GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE----  252 (275)
Q Consensus       177 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----  252 (275)
                      ..+++|++|++++|.++...+..  ..+..+++|+.|++++|.++..++ ...++. .+|+.+++++|.+++. ..    
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~--~~~~~l~~L~~L~Ls~N~i~~l~~-l~~l~~-~~L~~L~L~~Npl~~~-~~~~~~  136 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMS--SIVQKAPNLKILNLSGNELKSERE-LDKIKG-LKLEELWLDGNSLSDT-FRDQST  136 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGG--THHHHSTTCCCCCCTTSCCCCGGG-HHHHTT-CCCSSCCCTTSTTSSS-SSSHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhH--HHHhhCCcccccccccCccccchh-hhhhhc-cccceeecCCCCcCcC-cccchh
Confidence            34666666666666665432211  014456666666666666666543 222332 3466666666666543 21    


Q ss_pred             ---cccCCCCCcCEEe
Q 041140          253 ---LPIANFSSLYTLD  265 (275)
Q Consensus       253 ---~~l~~l~~L~~L~  265 (275)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1244566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.20  E-value=2.5e-07  Score=69.87  Aligned_cols=115  Identities=14%  Similarity=0.069  Sum_probs=53.6

Q ss_pred             CCCCCCEEECCCC-CCCCCC---cchhhhCCccCCEEECCCCCCCC----CCcccccCCCCCCeEEcccCCCCCcccccc
Q 041140          129 DLKHLVYLELSNN-NFEKAQ---LPVFLGSMGSLRHIDLSRAEFTG----MIPYQLGNLSNLQYLDLSSQIPLSFLYLEN  200 (275)
Q Consensus       129 ~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~  200 (275)
                      +.+.|++|+++++ .++...   +-..+...++|++|++++|.+..    .+...+...+.|++|++++|.+........
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466677777653 343320   12234445566666666666542    122233344556666666665543322222


Q ss_pred             cccccCCCCCCeeeccCCCCCCC-----CchhhhhCCCCCCcEEeccC
Q 041140          201 LSWLSGLSLLKHLDLTGVDLSTA-----SDWFLVTNMLPSLQVLKLSA  243 (275)
Q Consensus       201 l~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~L~L~~  243 (275)
                      ...+...++|++|++++|.+...     ..+...+...++|+.|+++.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            22244445555555555544332     11233333445555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.16  E-value=5.3e-07  Score=68.05  Aligned_cols=118  Identities=11%  Similarity=0.071  Sum_probs=77.8

Q ss_pred             CCccCCEEECCCC-CCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--Cch
Q 041140          154 SMGSLRHIDLSRA-EFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--SDW  226 (275)
Q Consensus       154 ~l~~L~~L~L~~n-~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~  226 (275)
                      +.++|++|+|+++ .+...    +-..+...+.|++|++++|.+...........+...+.|++|++++|.++..  ..+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578899999864 45421    2335667788999999888765432222222355667889999999888764  334


Q ss_pred             hhhhCCCCCCcEEeccCCcCCCCC------CCcccCCCCCcCEEecccCcC
Q 041140          227 FLVTNMLPSLQVLKLSACSLHNSL------PELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      ...+...++|++|++++|.+....      ....+...++|+.|+++++..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            556777788999999888654320      123345567888888877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.71  E-value=1.5e-06  Score=65.29  Aligned_cols=117  Identities=13%  Similarity=0.029  Sum_probs=56.7

Q ss_pred             cCCCCCCEEECCC-CCCCCCC---cchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCccccc
Q 041140          128 LDLKHLVYLELSN-NNFEKAQ---LPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLE  199 (275)
Q Consensus       128 ~~l~~L~~L~Ls~-n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~  199 (275)
                      .+.+.|++|++++ +.++...   +-..+...++|++|++++|.+...    +-..+...+.++.+++++|.+.......
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4556777777776 3454321   222334566677777777766532    1123344566666666666554322222


Q ss_pred             ccccccCCCCCCeeecc--CCCCCCC--CchhhhhCCCCCCcEEeccCC
Q 041140          200 NLSWLSGLSLLKHLDLT--GVDLSTA--SDWFLVTNMLPSLQVLKLSAC  244 (275)
Q Consensus       200 ~l~~l~~l~~L~~L~L~--~n~l~~~--~~~~~~~~~l~~L~~L~L~~n  244 (275)
                      ....+...++|+.+++.  .|.+...  ..+...+...++|+.|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            22224455556554333  3344322  112333444555666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.65  E-value=4.9e-06  Score=62.34  Aligned_cols=120  Identities=12%  Similarity=0.057  Sum_probs=78.6

Q ss_pred             hhCCccCCEEECCC-CCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--C
Q 041140          152 LGSMGSLRHIDLSR-AEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--S  224 (275)
Q Consensus       152 ~~~l~~L~~L~L~~-n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~  224 (275)
                      ..+.++|++|++++ +.++..    +-..+...++|++|++++|.+...........+...++++.+++++|.+...  .
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568899999987 445422    2334567888999999998775433222223356678889999988887654  2


Q ss_pred             chhhhhCCCCCCcEEec--cCCcCCCC---CCCcccCCCCCcCEEecccCcC
Q 041140          225 DWFLVTNMLPSLQVLKL--SACSLHNS---LPELPIANFSSLYTLDLSYNEF  271 (275)
Q Consensus       225 ~~~~~~~~l~~L~~L~L--~~n~l~~~---~~~~~l~~l~~L~~L~L~~N~l  271 (275)
                      .+...+...++|+.++|  ++|.+.+.   .....+...++|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            34556677788887655  45666543   1223456778899998887753