Citrus Sinensis ID: 041178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
Protein Sequence
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHccccccccccccccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEccccccccccccccccccccccccccccEEcccccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccEEcccccHHHHccccccEEccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLltswtlypanatnvssysktkinpcawvgisCNQAERIISINlssmglngtlqefafssfphlvhlnlsfnivfgtippqvgnlsklqhldlgnnqltgvippeighlnQLRSLYFDvnqlhgpipqeigQLSLINELALChnnlygpippslgnlsnlanfylnnnllfdsiplvlgnlksistldlsknqlsgsipfslgnlsnlgILYLYsnslsgpipsvIGNLESLLQLdlsenqlsgsipislgnlssLTVMSLFsnslssfippilgnlkslSALGLHinqlngvipssignlsnLRLLYLynngfygfvpeeiGYLKSIFELELCTNrlrggiphsigNLTELVLVNMCEnhlsgpipkslrnltSLERVRFNqnnlsgkvyeafgyhpnltfldlsqnnfygeisfnwrnfpklGTFIVSMnnisgsipleigesfklqvldissnhivgeIPVQLAKLFSLNKLILSLnqlsggmpfelgsltelQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLdlsynflgkempfqicnmkslEKLNLChnnlsgfiprcfegmhnlshidisynelqgpipnsttfkdarmegnkglcgnikglpsckaftsckqasrKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Flexible Loop (DISEMBL)
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Low Complexity Region (SEG)
MGisilnililslllnlshsiasYSTKEALALLKWkkslqnqnssllTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGnlsnlanfylnnnllFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIgnlsnlrllylynngfygFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Disordered region (IsUnstruct)
**ISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQ********
Disordered Region (DISOPRED)
*GISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQN*NSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNI*********************VVMFSSLVMIILLICLIGFKVLF**RN*****
Disordered Region (DISEMBL)
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Disordered Region (DISPRO)
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTL*******V*******INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRND****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	725	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.937	0.607	0.423	1e-153
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.966	0.670	0.431	1e-151
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.910	0.598	0.346	2e-96
O49318	1124	Probable leucine-rich rep	no	no	0.891	0.574	0.351	9e-95
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.954	0.628	0.333	2e-93
C0LGV1	1135	LRR receptor-like serine/	no	no	0.929	0.593	0.327	1e-90
P93194	1109	Receptor-like protein kin	N/A	no	0.8	0.522	0.357	2e-89
Q9FL28	1173	LRR receptor-like serine/	no	no	0.845	0.522	0.355	6e-89
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.833	0.482	0.359	5e-86
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.824	0.478	0.330	8e-86

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  544 bits (1401), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 336/794 (42%), Positives = 461/794 (58%), Gaps = 114/794 (14%)

Query: 28  EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISI 87
           EA ALLKWK +  N  SS L+SW ++ AN       + T  +  +W G+SCN    I  +
Sbjct: 33  EANALLKWKSTFTN--SSKLSSW-VHDAN-------TNTSFSCTSWYGVSCNSRGSIEEL 82

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
           NL++ G+ GT Q+F F S  +L +++LS N++ GTIPPQ GNLSKL + DL  N LTG I
Sbjct: 83  NLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEI 142

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
            P +G+L  L  LY   N L   IP E+G +  + +LAL  N L G IP SLGNL NL  
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMV 202

Query: 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267
            YL  N L   IP  LGN++S++ L LS+N+L+GSIP +LGNL NL +LYLY N L+G I
Sbjct: 203 LYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVI 262

Query: 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327
           P  IGN+ES+  L LS+N+L+GSIP SLGNL +LT++SLF N L+  IPP LGN++S+  
Sbjct: 263 PPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMID 322

Query: 328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNN------------------------------ 357
           L L  N+L G IPSS+GNL NL +LYLY N                              
Sbjct: 323 LELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSI 382

Query: 358 ------------------GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL-- 397
                                G +P+E+G ++S+  L+L  N+L G +P S GN T+L  
Sbjct: 383 PSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLES 442

Query: 398 --VLVN---------------------------------MCE-----------NHLSGPI 411
             + VN                                 +C+           NHL GPI
Sbjct: 443 LYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPI 502

Query: 412 PKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT 471
           PKSLR+  SL R RF  N  +G ++EAFG +P+L F+D S N F+GEIS NW   PKLG 
Sbjct: 503 PKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGA 562

Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
            I+S NNI+G+IP EI    +L  LD+S+N++ GE+P  +  L +L++L L+ NQLSG +
Sbjct: 563 LIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV 622

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591
           P  L  LT L+ LDLS+N   S IP++  + LKL  +NLS N+F   IP  + KL  L++
Sbjct: 623 PAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQ 681

Query: 592 LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651
           LDLS+N L  E+P Q+ +++SL+KL+L HNNLSG IP  FEGM  L+++DIS N+L+GP+
Sbjct: 682 LDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPL 741

Query: 652 PNSTTFKDAR---MEGNKGLCGNI--KGLPSCKAFTSCKQ-ASRKKWVVVMFSSLVMIIL 705
           P++ TF+ A    +E N GLC NI  + L  C+     K+  +   W++V     V++IL
Sbjct: 742 PDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPILG-VLVIL 800

Query: 706 LICLIGFKVLFQRR 719
            IC   F    ++R
Sbjct: 801 SICANTFTYCIRKR 814

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  536 bits (1380), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 314/727 (43%), Positives = 455/727 (62%), Gaps = 26/727 (3%)

Query: 8   ILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQ-NSSLLTSWTLYPANATNVSSYSKT 66
           +LI+S++L+ S ++ S + +EA ALLKWK +  NQ +SS L+SW        N SS+   
Sbjct: 31  LLIISIVLSCSFAV-SATVEEANALLKWKSTFTNQTSSSKLSSWV-----NPNTSSFC-- 82

Query: 67  KINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQ 126
                +W G++C+    II +NL++ G+ GT ++F FSS P+L  ++LS N   GTI P 
Sbjct: 83  ----TSWYGVACSLGS-IIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPL 137

Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
            G  SKL++ DL  NQL G IPPE+G L+ L +L+   N+L+G IP EIG+L+ + E+A+
Sbjct: 138 WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
             N L GPIP S GNL+ L N YL  N L  SIP  +GNL ++  L L +N L+G IP S
Sbjct: 198 YDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSS 257

Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
            GNL N+ +L ++ N LSG IP  IGN+ +L  L L  N+L+G IP +LGN+ +L V+ L
Sbjct: 258 FGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHL 317

Query: 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE 366
           + N L+  IPP LG ++S+  L +  N+L G +P S G L+ L  L+L +N   G +P  
Sbjct: 318 YLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPG 377

Query: 367 IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF 426
           I     +  L+L TN   G +P +I    +L  + + +NH  GP+PKSLR+  SL RVRF
Sbjct: 378 IANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRF 437

Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
             N+ SG + EAFG +P L F+DLS NNF+G++S NW    KL  FI+S N+I+G+IP E
Sbjct: 438 KGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPE 497

Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
           I    +L  LD+SSN I GE+P  ++ +  ++KL L+ N+LSG +P  +  LT L+YLDL
Sbjct: 498 IWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDL 557

Query: 547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ 606
           S+N+  S IP ++ NL +L Y+NLS N   Q IP  + KL  L  LDLSYN L  E+  Q
Sbjct: 558 SSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQ 617

Query: 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA---RME 663
             ++++LE+L+L HNNLSG IP  F+ M  L+H+D+S+N LQGPIP++  F++A     E
Sbjct: 618 FRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFE 677

Query: 664 GNKGLCGNI---KGLPSCKAFTSCKQASRKKWVVVMFSSLV--MIILLICLIGFKVLFQR 718
           GNK LCG++   +GL  C   +S K    +  ++ +   ++  +IIL +C  G  + F++
Sbjct: 678 GNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVC-AGIFICFRK 736

Query: 719 RNDSTKQ 725
           R   TKQ
Sbjct: 737 R---TKQ 740

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  354 bits (908), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 249/718 (34%), Positives = 369/718 (51%), Gaps = 58/718 (8%)

Query: 59  NVSSYSKTKINPCAWVGISCN---QAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLS 115
           N+ +++     PC W G+ C+       ++S+NLSSM L+G L   +     HL  L+LS
Sbjct: 47  NLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSP-SIGGLVHLKQLDLS 105

Query: 116 FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI 175
           +N + G IP ++GN S L+ L L NNQ  G IP EIG L  L +L    N++ G +P EI
Sbjct: 106 YNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEI 165

Query: 176 GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLS 235
           G L  +++L    NN+ G +P S+GNL  L +F    N++  S+P  +G  +S+  L L+
Sbjct: 166 GNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLA 225

Query: 236 KNQLSGS------------------------------------------------IPFSL 247
           +NQLSG                                                 IP  L
Sbjct: 226 QNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKEL 285

Query: 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLF 307
           G+L +L  LYLY N L+G IP  IGNL   +++D SEN L+G IP+ LGN+  L ++ LF
Sbjct: 286 GDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLF 345

Query: 308 SNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI 367
            N L+  IP  L  LK+LS L L IN L G IP     L  L +L L+ N   G +P ++
Sbjct: 346 ENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query: 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
           G+   ++ L++  N L G IP  +   + ++++N+  N+LSG IP  +    +L ++R  
Sbjct: 406 GWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLA 465

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487
           +NNL G+         N+T ++L QN F G I     N   L    ++ N  +G +P EI
Sbjct: 466 RNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREI 525

Query: 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547
           G   +L  L+ISSN + GE+P ++     L +L +  N  SG +P E+GSL +L+ L LS
Sbjct: 526 GMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLS 585

Query: 548 ANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQ 606
            N L   IP ++GNL +L  L +  N F   IP E+  L  L   L+LSYN L  E+P +
Sbjct: 586 NNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPE 645

Query: 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNK 666
           + N+  LE L L +NNLSG IP  F  + +L   + SYN L GPIP       +   GN+
Sbjct: 646 LSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISMSSFIGNE 705

Query: 667 GLCGN-----IKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRR 719
           GLCG      I+  P   + ++ K    +   ++  ++ V+  + + LI   V   RR
Sbjct: 706 GLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRR 763

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  348 bits (893), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 252/716 (35%), Positives = 373/716 (52%), Gaps = 70/716 (9%)

Query: 70  PCAWVGISCNQAER--------IISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG 121
           PC W+G++C+            + S++LSSM L+G +   +     +LV+LNL++N + G
Sbjct: 65  PCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSP-SIGGLVNLVYLNLAYNALTG 123

Query: 122 TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181
            IP ++GN SKL+ + L NNQ  G IP EI  L+QLRS     N+L GP+P+EIG L  +
Sbjct: 124 DIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNL 183

Query: 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKN---- 237
            EL    NNL GP+P SLGNL+ L  F    N    +IP  +G   ++  L L++N    
Sbjct: 184 EELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISG 243

Query: 238 --------------------QLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
                               + SG IP  +GNL++L  L LY NSL GPIPS IGN++SL
Sbjct: 244 ELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSL 303

Query: 278 ------------------------LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313
                                   +++D SEN LSG IP+ L  +S L ++ LF N L+ 
Sbjct: 304 KKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTG 363

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSI 373
            IP  L  L++L+ L L IN L G IP    NL+++R L L++N   G +P+ +G    +
Sbjct: 364 IIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPL 423

Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
           + ++   N+L G IP  I   + L+L+N+  N + G IP  +    SL ++R   N L+G
Sbjct: 424 WVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTG 483

Query: 434 KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL 493
           +         NL+ ++L QN F G +        KL    ++ N  S ++P EI +   L
Sbjct: 484 QFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNL 543

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
              ++SSN + G IP ++A    L +L LS N   G +P ELGSL +L+ L LS N+   
Sbjct: 544 VTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSG 603

Query: 554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKS 612
            IP +IGNL  L  L +  N F   IP ++  L  L   ++LSYN    E+P +I N+  
Sbjct: 604 NIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHL 663

Query: 613 LEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLC 669
           L  L+L +N+LSG IP  FE + +L   + SYN L G +P++  F++  +    GNKGLC
Sbjct: 664 LMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLC 723

Query: 670 GNIKGLPSCKA-------FTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQR 718
           G    L SC          +S K  S ++  +++  S V+  + + LI   V F R
Sbjct: 724 GG--HLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLLIAIVVHFLR 777

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  343 bits (881), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 258/773 (33%), Positives = 374/773 (48%), Gaps = 81/773 (10%)

Query: 9   LILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKI 68
           L + +L + S  +     +E   LL++K  L + N  L              +S+++   
Sbjct: 8   LAIVILCSFSFILVRSLNEEGRVLLEFKAFLNDSNGYL--------------ASWNQLDS 53

Query: 69  NPCAWVGISCNQAERIISINLSSMGLNGTLQ----------------EFAFSSFPH---- 108
           NPC W GI+C     + S++L+ M L+GTL                  F     P     
Sbjct: 54  NPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSL 113

Query: 109 ---------------------------LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN 141
                                      L  L L  N +FG+IP Q+GNLS LQ L + +N
Sbjct: 114 CRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSN 173

Query: 142 QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGN 201
            LTGVIPP +  L QLR +    N   G IP EI     +  L L  N L G +P  L  
Sbjct: 174 NLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEK 233

Query: 202 LSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
           L NL +  L  N L   IP  +GN+  +  L L +N  +GSIP  +G L+ +  LYLY+N
Sbjct: 234 LQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTN 293

Query: 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGN 321
            L+G IP  IGNL    ++D SENQL+G IP   G++ +L ++ LF N L   IP  LG 
Sbjct: 294 QLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGE 353

Query: 322 LKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN 381
           L  L  L L IN+LNG IP  +  L  L  L L++N   G +P  IG+  +   L++  N
Sbjct: 354 LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413

Query: 382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV-YEAFG 440
            L G IP        L+L+++  N LSG IP+ L+   SL ++    N L+G +  E F 
Sbjct: 414 SLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFN 473

Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500
              NLT L+L QN   G IS +      L    ++ NN +G IP EIG   K+   +ISS
Sbjct: 474 LQ-NLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISS 532

Query: 501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIG 560
           N + G IP +L    ++ +L LS N+ SG +  ELG L  L+ L LS N+L   IP S G
Sbjct: 533 NQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFG 592

Query: 561 NLLKLRYLNLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
           +L +L  L L  N   + IP+E+ KL  L   L++S+N L   +P  + N++ LE L L 
Sbjct: 593 DLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLN 652

Query: 620 HNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME-----GNKGLCGNIKG 674
            N LSG IP     + +L   +IS N L G +P++  F+  RM+     GN GLC + + 
Sbjct: 653 DNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQ--RMDSSNFAGNHGLCNSQRS 710

Query: 675 LPSCKAFTSCKQA--------SRKKWVVVMFSSLVMIILLICLIGFKVLFQRR 719
              C+       +        S+++ ++ +   ++  + LI  +G     +RR
Sbjct: 711 --HCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKRR 761

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  334 bits (857), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 255/778 (32%), Positives = 384/778 (49%), Gaps = 104/778 (13%)

Query: 9   LILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKI 68
           + LSL L    S  S ST E  AL+ W  S  +   S+ + W   P+++           
Sbjct: 20  ITLSLFLAFFISSTSASTNEVSALISWLHSSNSPPPSVFSGWN--PSDS----------- 66

Query: 69  NPCAWVGISCNQAER--IISINLSSMGLN----------GTLQEFAFS------------ 104
           +PC W  I+C+ ++   +  IN+ S+ L            +LQ+   S            
Sbjct: 67  DPCQWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEI 126

Query: 105 -SFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSL--- 160
                L+ ++LS N + G IP  +G L  LQ L L +N LTG IPPE+G    L++L   
Sbjct: 127 GDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIF 186

Query: 161 --YFDVN--------------------QLHGPIPQEIGQLSLINELALCHNNLYGPIPPS 198
             Y   N                    +L G IP+EIG    +  L L    + G +P S
Sbjct: 187 DNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVS 246

Query: 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYL 258
           LG LS L +  + + +L   IP  LGN   +  L L  N LSG++P  LG L NL  + L
Sbjct: 247 LGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLL 306

Query: 259 YSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI 318
           + N+L GPIP  IG ++SL  +DLS N  SG+IP S GNLS+L  + L SN+++  IP I
Sbjct: 307 WQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSI 366

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
           L N   L    +  NQ++G+IP  IG L  L +   + N   G +P+E+   +++  L+L
Sbjct: 367 LSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDL 426

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
             N L G +P  +  L  L  + +  N +SG IP  + N TSL R+R   N ++G++ + 
Sbjct: 427 SQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKG 486

Query: 439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498
            G+  NL+FLDLS+NN  G +     N  +L    +S N + G +PL +    KLQVLD+
Sbjct: 487 IGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDV 546

Query: 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
           SSN + G+IP  L  L SLN+LILS N  +G +P  LG  T LQ LDLS+N +   IP+ 
Sbjct: 547 SSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEE 606

Query: 559 IGNLLKLR-YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617
           + ++  L   LNLS N     IP  +  L  LS LD+S+N L  ++   +  +++L  LN
Sbjct: 607 LFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDLS-ALSGLENLVSLN 665

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKD---ARMEGNKGLCGNIKG 674
           + HN  SG+                        +P+S  F+    A MEGN GLC   KG
Sbjct: 666 ISHNRFSGY------------------------LPDSKVFRQLIGAEMEGNNGLCS--KG 699

Query: 675 LPSCKAFTSCKQASRKK----------WVVVMFSSLVMIILLICLIGFKVLFQRRNDS 722
             SC    S +  +++            +++  ++++ ++ ++ +I  K + +  NDS
Sbjct: 700 FRSCFVSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLAVLGVLAVIRAKQMIRDDNDS 757

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 327/612 (53%), Gaps = 32/612 (5%)

Query: 45  SLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFA-- 102
           SL   WT  P++ T   S++ +   PC+W+G+ C++ + + ++NLSS G++G   EF   
Sbjct: 33  SLTRHWTSIPSDITQ--SWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISG---EFGPE 87

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
            S   HL  + LS N  FG+IP Q+GN S L+H+DL +N  TG IP  +G L  LR+L  
Sbjct: 88  ISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNL-- 145

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
                                 +L  N+L GP P SL ++ +L   Y   N L  SIP  
Sbjct: 146 ----------------------SLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSN 183

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
           +GN+  ++TL L  NQ SG +P SLGN++ L  LYL  N+L G +P  + NLE+L+ LD+
Sbjct: 184 IGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDV 243

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
             N L G+IP+   +   +  +SL +N  +  +PP LGN  SL   G     L+G IPS 
Sbjct: 244 RNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSC 303

Query: 343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNM 402
            G L+ L  LYL  N F G +P E+G  KS+ +L+L  N+L G IP  +G L++L  +++
Sbjct: 304 FGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHL 363

Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFN 462
             N+LSG +P S+  + SL+ ++  QNNLSG++         L  L L +N+F G I  +
Sbjct: 364 YTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQD 423

Query: 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522
                 L    ++ N  +G IP  +    KL+ L +  N++ G +P  L    +L +LIL
Sbjct: 424 LGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTLERLIL 483

Query: 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
             N L GG+P +      L + DLS N     IP S+GNL  +  + LS+NQ    IP E
Sbjct: 484 EENNLRGGLP-DFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPE 542

Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
           +  L+ L  L+LS+N L   +P ++ N   L +L+  HN L+G IP     +  L+ + +
Sbjct: 543 LGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSL 602

Query: 643 SYNELQGPIPNS 654
             N   G IP S
Sbjct: 603 GENSFSGGIPTS 614

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  329 bits (843), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 232/653 (35%), Positives = 345/653 (52%), Gaps = 40/653 (6%)

Query: 28  EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISI 87
           E  AL  +K  + N    +L+ WT+  +            +  C W GI+C+    ++S+
Sbjct: 30  EIEALKSFKNGISNDPLGVLSDWTIIGS------------LRHCNWTGITCDSTGHVVSV 77

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
           +L    L G L   A ++  +L  L+L+ N   G IP ++G L++L  L L  N  +G I
Sbjct: 78  SLLEKQLEGVLSP-AIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSI 136

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
           P  I  L  +  L    N L G +P+EI + S +  +   +NNL G IP  LG+L +L  
Sbjct: 137 PSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQM 196

Query: 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267
           F    N L  SIP+ +G L +++ LDLS NQL+G IP   GNL NL  L L  N L G I
Sbjct: 197 FVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDI 256

Query: 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327
           P+ IGN  SL+QL+L +NQL+G IP  LGNL  L  + ++ N L+S IP  L  L  L+ 
Sbjct: 257 PAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTH 316

Query: 328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGI 387
           LGL  N L G I   IG L +L +L L++N F G  P+ I  L+++  L +  N + G +
Sbjct: 317 LGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGEL 376

Query: 388 PHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTF 447
           P  +G LT L  ++  +N L+GPIP S+ N T L+ +  + N ++G++   FG   NLTF
Sbjct: 377 PADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFG-RMNLTF 435

Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI 507
           + + +N+F GEI  +  N   L T  V+ NN++G++   IG+  KL++L +S N + G I
Sbjct: 436 ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPI 495

Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQ------------------------Y 543
           P ++  L  LN L L  N  +G +P E+ +LT LQ                         
Sbjct: 496 PREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSV 555

Query: 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
           LDLS NK    IP     L  L YL+L  N+F   IP  ++ L  L+  D+S N L   +
Sbjct: 556 LDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTI 615

Query: 604 PFQ-ICNMKSLE-KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
           P + + ++K+++  LN  +N L+G IP+    +  +  ID+S N   G IP S
Sbjct: 616 PGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRS 668

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  319 bits (817), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 329/640 (51%), Gaps = 36/640 (5%)

Query: 111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL------------- 157
           +LNL  N + G IP ++  L+ LQ LDL +N LTGVI  E   +NQL             
Sbjct: 268 YLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGS 327

Query: 158 ------------RSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNL 205
                       + L+    QL G IP EI     +  L L +N L G IP SL  L  L
Sbjct: 328 LPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVEL 387

Query: 206 ANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265
            N YLNNN L  ++   + NL ++    L  N L G +P  +G L  L I+YLY N  SG
Sbjct: 388 TNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSG 447

Query: 266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325
            +P  IGN   L ++D   N+LSG IP S+G L  LT + L  N L   IP  LGN   +
Sbjct: 448 EMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQM 507

Query: 326 SALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG 385
           + + L  NQL+G IPSS G L+ L L  +YNN   G +P+ +  LK++  +   +N+  G
Sbjct: 508 TVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNG 567

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
            I    G+ + L   ++ EN   G IP  L   T+L+R+R  +N  +G++   FG    L
Sbjct: 568 SISPLCGSSSYLSF-DVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISEL 626

Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG 505
           + LD+S+N+  G I        KL    ++ N +SG IP  +G+   L  L +SSN  VG
Sbjct: 627 SLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG 686

Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL 565
            +P ++  L ++  L L  N L+G +P E+G+L  L  L+L  N+L   +P +IG L KL
Sbjct: 687 SLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKL 746

Query: 566 RYLNLSNNQFIQKIPIEVEKLIHL-SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
             L LS N    +IP+E+ +L  L S LDLSYN     +P  I  +  LE L+L HN L 
Sbjct: 747 FELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Query: 625 GFIPRCFEGMHNLSHIDISYNELQGPIPNS-TTFKDARMEGNKGLCGNIKGLPSCKAFTS 683
           G +P     M +L ++++SYN L+G +    + ++     GN GLCG+   L  C    S
Sbjct: 807 GEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCGS--PLSHCNRAGS 864

Query: 684 CKQASRKKWVVVM---FSSLVMIILLICLIGFKVLFQRRN 720
             Q S     VV+    SSL  I L++ +I   +LF ++N
Sbjct: 865 KNQRSLSPKTVVIISAISSLAAIALMVLVI---ILFFKQN 901

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  318 bits (816), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 238/721 (33%), Positives = 339/721 (47%), Gaps = 123/721 (17%)

Query: 54  PANATNVSSYSKTKINPCAWVGISCNQAE--RIISINLSSMGLNGTLQEFAFSSFPHLVH 111
           P     +  ++   IN C+W G++C+     R+I++NL+ +GL G++  + F  F +L+H
Sbjct: 41  PQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIH 99

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL---- 167
           L+LS N + G IP  + NL+ L+ L L +NQLTG IP ++G L  +RSL    N+L    
Sbjct: 100 LDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI 159

Query: 168 --------------------HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
                                GPIP ++G+L  +  L L  N L GPIP  LGN S+L  
Sbjct: 160 PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTV 219

Query: 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267
           F    N+L  +IP  LG L+++  L+L+ N L+G IP  LG +S L  L L +N L G I
Sbjct: 220 FTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLI 279

Query: 268 PSVIGNLESLLQLDLSEN------------------------------------------ 285
           P  + +L +L  LDLS N                                          
Sbjct: 280 PKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLE 339

Query: 286 -------QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
                  QLSG IP+ L    SL  + L +NSL+  IP  L  L  L+ L LH N L G 
Sbjct: 340 QLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGT 399

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV 398
           +  SI NL+NL+ L LY+N   G +P+EI  L+ +  L L  NR  G IP  IGN T L 
Sbjct: 400 LSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLK 459

Query: 399 LVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE 458
           +++M  NH  G IP S+  L  L  +   QN L G +  + G    L  LDL+ N   G 
Sbjct: 460 MIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGS 519

Query: 459 I--SFNW-------------------------RNFPKLG--------------------T 471
           I  SF +                         RN  ++                     +
Sbjct: 520 IPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS 579

Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
           F V+ N     IPLE+G S  L  L +  N + G+IP  L K+  L+ L +S N L+G +
Sbjct: 580 FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTI 639

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591
           P +L    +L ++DL+ N L   IP  +G L +L  L LS+NQF++ +P E+     L  
Sbjct: 640 PLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLV 699

Query: 592 LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651
           L L  N L   +P +I N+ +L  LNL  N  SG +P+    +  L  + +S N L G I
Sbjct: 700 LSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEI 759

Query: 652 P 652
           P
Sbjct: 760 P 760

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
225456159	1038	PREDICTED: probable LRR receptor-like se	0.975	0.681	0.522	0.0
225456161	1037	PREDICTED: probable LRR receptor-like se	0.975	0.681	0.525	0.0
359491512	1078	PREDICTED: probable LRR receptor-like se	0.935	0.628	0.501	1e-175
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.979	0.687	0.506	1e-175
359491509	1032	PREDICTED: probable LRR receptor-like se	0.982	0.689	0.504	1e-174
147772402	996	hypothetical protein VITISV_022117 [Viti	0.917	0.667	0.485	1e-167
359484864	1091	PREDICTED: probable LRR receptor-like se	0.937	0.623	0.460	1e-157
255545702	1008	receptor protein kinase, putative [Ricin	0.922	0.663	0.477	1e-155
297846638	1123	hypothetical protein ARALYDRAFT_473694 [	0.940	0.607	0.436	1e-152
15219699	1120	putative leucine-rich repeat receptor-li	0.937	0.607	0.423	1e-152

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/714 (52%), Positives = 488/714 (68%), Gaps = 7/714 (0%)

Query: 18  SHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGIS 77
           S  ++SYS +E  ALLKWK SLQN N S L SW LYP N+TN S++  T  +PC W GIS
Sbjct: 24  SDHVSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGIS 83

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLD 137
           CN A  +I INL+  GLNGTL +F+FSSFP+L ++++S N + G IPPQ+G L +L++LD
Sbjct: 84  CNHAGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLD 143

Query: 138 LGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
           L  NQ +G IP EIG L  L  L+   NQL+G IP EIGQL+ + ELAL  N L G IP 
Sbjct: 144 LSINQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPA 203

Query: 198 SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257
           SLGNLSNLA+ YL  N L  SIP  +GNL ++  +  + N L+G IP + GNL  L +LY
Sbjct: 204 SLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNNNNLTGPIPSTFGNLKRLTVLY 263

Query: 258 LYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317
           L++NSLSGPIP  IGNL+SL +L L EN LSG IP+SL +LS LT++ L++N LS  IP 
Sbjct: 264 LFNNSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQ 323

Query: 318 ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            +GNLKSL  L L  NQLNG IP+S+GNL+NL +L+L +N   G++P+EIG L  +  LE
Sbjct: 324 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNQLSGYIPQEIGKLHKLVVLE 383

Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           + TN+L G +P  I     LV   + +NHLSGPIPKSL+N  +L R  F  N L+G + E
Sbjct: 384 IDTNQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNISE 443

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
             G  PNL F+DLS N F+GE+S NW   P+L    ++ NNI+GSIP + G S  L +LD
Sbjct: 444 VVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLTLLD 503

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
           +SSNH+VGEIP ++  L SL  LIL+ NQLSG +P ELGSL+ L+YLDLSAN+L   IP+
Sbjct: 504 LSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPE 563

Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617
            +G+ L L YLNLSNN+    IP+++ KL HLS+LDLS+N L   +P QI  ++SLE L+
Sbjct: 564 HLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLAGGIPPQIQGLQSLEMLD 623

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCGNIKG 674
           L HNNL GFIP+ FE M  LS++DISYN+LQGPIP+S  F++A +E   GNK LCGN+KG
Sbjct: 624 LSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKG 683

Query: 675 LPSCK-AFTSCKQASRKKWVVV---MFSSLVMIILLICLIGFKVLFQRRNDSTK 724
           L  CK  F   +Q  +K   VV   +F  L  ++LL   IG  ++ +RR  + +
Sbjct: 684 LQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAERRERTPE 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/714 (52%), Positives = 486/714 (68%), Gaps = 7/714 (0%)

Query: 18  SHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGIS 77
           S  ++SYS +E  ALLKWK +L N N S L SWTLYP N TN S++  T+++PC W GIS
Sbjct: 24  SDHVSSYSNEETQALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGIS 83

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLD 137
           CN A  +I INL+  GL GTLQ F+FSSFP+L ++++S N + G IPPQ+G LSKL++LD
Sbjct: 84  CNHAGSVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLD 143

Query: 138 LGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
           L  NQ +G IPPEIG L  L  L+   NQL+G IP EIGQL+ + ELAL  N L G IP 
Sbjct: 144 LSINQFSGGIPPEIGLLTNLEVLHLVQNQLNGSIPHEIGQLTSLYELALYTNQLEGSIPA 203

Query: 198 SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257
           SLGNLSNLA+ YL  N L  SIP  +GNL ++  L    N L+G IP + GNL +L +LY
Sbjct: 204 SLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVQLYSDTNNLTGPIPSTFGNLKHLTVLY 263

Query: 258 LYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317
           L++NSLSGPIP  IGNL+SL  L L  N LSG IP+SL +LS LT++ L++N LS  IP 
Sbjct: 264 LFNNSLSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSLCDLSGLTLLHLYANQLSGPIPQ 323

Query: 318 ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            +GNLKSL  L L  NQLNG IP+S+GNL+NL +L+L +N   G+ P+EIG L  +  LE
Sbjct: 324 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNRLSGYFPQEIGKLHKLVVLE 383

Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           + TN+L G +P  I     L    + +NHLSGPIPKSL+N  +L R  F  N L+G V E
Sbjct: 384 IDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCRNLTRALFQGNRLTGNVSE 443

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
             G  PNL F+DLS N F+GE+S NW   P+L    ++ NNI+GSIP + G S  L +LD
Sbjct: 444 VVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAGNNITGSIPEDFGISTNLILLD 503

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
           +SSNH+VGEIP ++  L SL  LIL+ NQLSG +P ELGSL+ L+YLDLSAN+L   IP+
Sbjct: 504 LSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELGSLSHLEYLDLSANRLNGSIPE 563

Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617
            +G+ L L YLNLSNN+    IP+++ KL HLS+LDLS+N L   +P QI  ++SLE L+
Sbjct: 564 HLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSHNLLTGGIPAQIQGLESLEMLD 623

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCGNIKG 674
           L HNNL GFIP+ FE M  LS++DISYN+LQGPIP+S  F++A +E   GNK LCGN+KG
Sbjct: 624 LSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNAFRNATIEVLKGNKDLCGNVKG 683

Query: 675 LPSCK-AFTSCKQASRKKWVVV---MFSSLVMIILLICLIGFKVLFQRRNDSTK 724
           L  CK  F   +Q  +K   VV   +F  L  ++LL   IG  ++ +RR  + +
Sbjct: 684 LQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLSAFIGIFLIAERRERTPE 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/708 (50%), Positives = 455/708 (64%), Gaps = 30/708 (4%)

Query: 20  SIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPA--NATNVSSYSKTKINPCAWVGIS 77
            + S S +E  ALLKWK +L N N S L SWTLYP   N+TN S++  T   PC W GIS
Sbjct: 52  DMKSDSNEETQALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGIS 111

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLD 137
           CN A  +I INL+  GL GTLQ F+FSSFP+L ++++  N + G IPPQ+G LSKL++LD
Sbjct: 112 CNHAGSVIRINLTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLD 171

Query: 138 LGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
           L  NQ +G IPPEIG L  L  L+                      LAL  N L G IP 
Sbjct: 172 LSTNQFSGGIPPEIGLLTNLEVLHL---------------------LALYTNQLEGSIPA 210

Query: 198 SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257
           SLGNLSNLA+ YL  N L  SIP  +GNL ++  +    N L+G IP + GNL  L  LY
Sbjct: 211 SLGNLSNLASLYLYENQLSGSIPPEMGNLANLVEIYSDTNNLTGLIPSTFGNLKRLTTLY 270

Query: 258 LYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317
           L++N LSG IP  IGNL SL  + L  N LSG IP SLG+LS LT++ L++N LS  IPP
Sbjct: 271 LFNNQLSGHIPPEIGNLTSLQGISLYANNLSGPIPASLGDLSGLTLLHLYANQLSGPIPP 330

Query: 318 ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            +GNLKSL  L L  NQLNG IP+S+GNL+NL +L+L +N   G+ P+EIG L  +  LE
Sbjct: 331 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRDNHLSGYFPKEIGKLHKLVVLE 390

Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           + TNRL G +P  I     LV   + +N LSGPIPKS++N  +L R  F  N L+G + E
Sbjct: 391 IDTNRLSGSLPEGICQGGSLVRFTVSDNLLSGPIPKSMKNCRNLTRALFGGNQLTGNISE 450

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
             G  PNL ++DLS N F+GE+S NW   P+L    ++ N+I+GSIP + G S  L +LD
Sbjct: 451 VVGDCPNLEYIDLSYNRFHGELSHNWGRCPQLQRLEMAGNDITGSIPEDFGISTNLTLLD 510

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
           +SSNH+VGEIP ++  L SL +L L+ NQLSG +P ELGSL  L +LDLSAN+L   I +
Sbjct: 511 LSSNHLVGEIPKKMGSLTSLLELKLNDNQLSGSIPPELGSLFSLAHLDLSANRLNGSITE 570

Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617
           ++G  L L YLNLSNN+   +IP ++ KL HLS+LDLS+N L  E+P QI  ++SLE LN
Sbjct: 571 NLGACLNLHYLNLSNNKLSNRIPAQMGKLSHLSQLDLSHNLLSGEIPPQIEGLESLENLN 630

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCGNIKG 674
           L HNNLSGFIP+ FE M  LS IDISYN+LQGPIPNS  F+DA +E   GNK LCGN+KG
Sbjct: 631 LSHNNLSGFIPKAFEEMRGLSDIDISYNQLQGPIPNSKAFRDATIELLKGNKDLCGNVKG 690

Query: 675 LPSCKAFTSCKQASRKKW----VVVMFSSLVMIILLICLIGFKVLFQR 718
           L  CK  +   Q   KK      +++F  L  ++LL   IG  ++ +R
Sbjct: 691 LQPCKNDSGAGQQPVKKGHKIVFIIVFPLLGALVLLFAFIGIFLIAER 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 364/719 (50%), Positives = 480/719 (66%), Gaps = 9/719 (1%)

Query: 11  LSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKI-N 69
           L ++L  S +++S+S +E  ALLKWK +L NQN   L  W+L+P N TN S+   T    
Sbjct: 17  LWIMLVCSDNVSSHSNEETQALLKWKATLLNQN---LLLWSLHPNNITNSSAQPGTATRT 73

Query: 70  PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGN 129
           PC W GISC +A  +I INL+ +GL GTLQ+F+FSSFP+L + +++ N + G IPPQ+G 
Sbjct: 74  PCKWFGISC-KAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGF 132

Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
           LSKL++LDL  NQ +G IP EIG L  L  L+   NQL+G IP EIGQL  + +L+L  N
Sbjct: 133 LSKLKYLDLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTN 192

Query: 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
            L G IP SLGNLSNL N YL+ N L   IP  +GNL  +  L L+ N L+G IP +LGN
Sbjct: 193 KLEGSIPASLGNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGN 252

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L +L +L LY+N LSGPIP+ IGNL+ L  L LS N LSG IP+SLG+LS L  + LF N
Sbjct: 253 LKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDN 312

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369
            LS  IP  +GNL+SL  L +  NQLNG IP+S+GNL NL +LYL +N     +P EIG 
Sbjct: 313 QLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTSLGNLINLEILYLRDNKLSSSIPPEIGK 372

Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L  + ELE+ TN+L G +P  I     L    + +N L GPIP+SL+N  SL R R  +N
Sbjct: 373 LHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLARARLQRN 432

Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            L+G + EAFG  PNL  ++LS N FYGE+S NW    KL    ++ NNI+GSIP + G 
Sbjct: 433 QLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSIPADFGI 492

Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
           S +L VL++SSNH+VGEIP +L  + SL KLIL+ N+LSG +P ELGSL +L YLDLS N
Sbjct: 493 STQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLSGN 552

Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L   IP+ +GN L L YLNLSNN+    IP+++ KL HLS LDLS+N L  E+P QI  
Sbjct: 553 RLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQIQG 612

Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNK 666
           ++SLEKLNL HNNLSG IP+ FE MH L  +DISYN+LQG IPNS  F++  +E   GNK
Sbjct: 613 LQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQGNK 672

Query: 667 GLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTKQ 725
           GLCG++KGL  C+  ++ K  + K   +++FS L  +++L   IG  ++ Q R ++  +
Sbjct: 673 GLCGSVKGLQPCENRSATK-GTHKAVFIIIFSLLGALLILSAFIGISLISQGRRNAKME 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/721 (50%), Positives = 480/721 (66%), Gaps = 9/721 (1%)

Query: 9   LILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKI 68
           L+L ++L  S +++S+S +E  ALLKWK +L NQN   L  W+L+P N TN S+   T  
Sbjct: 15  LLLWIMLVCSDNVSSHSNEETQALLKWKATLLNQN---LLLWSLHPNNITNSSAQPGTAT 71

Query: 69  -NPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV 127
             PC W GISC +A  +I INL+ +GL GTLQ+F+FSSFP+L + +++ N + G IPPQ+
Sbjct: 72  RTPCKWFGISC-KAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQI 130

Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC 187
           G LSKL++LDL  NQ +G IP EIG L  L  L+   NQL+G IP EIGQL  + +L+L 
Sbjct: 131 GFLSKLKYLDLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLY 190

Query: 188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL 247
            N L G IP SLGNLSNL N YL+ N L   IP  +GNL  +  L L+ N L+G IP +L
Sbjct: 191 TNKLEGTIPASLGNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTL 250

Query: 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLF 307
           GNL +L +L LY+N LSGPIP+ IGNL+ L  L LS N LSG IP+SLG+LS L  + LF
Sbjct: 251 GNLKSLTLLRLYNNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLF 310

Query: 308 SNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI 367
            N LS  IP  +GNL+SL  L +  NQLNG IP+ +GNL NL +LYL +N     +P EI
Sbjct: 311 DNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTLLGNLINLEILYLRDNKLSSSIPPEI 370

Query: 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
           G L  + ELE+ TN+L G +P  I     L    + +N L GPIP+SL+N  SL R R  
Sbjct: 371 GKLHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLKNCPSLARARLQ 430

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487
            N L+G + EAFG  PNL  ++LS N FYGE+S NW    KL    ++ NNI+GSIP + 
Sbjct: 431 GNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAGNNITGSIPADF 490

Query: 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547
           G S +L VL++SSNH+VGEIP +L  + SL KLIL+ N+LSG +P ELGSL +L YLDLS
Sbjct: 491 GISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELGSLADLGYLDLS 550

Query: 548 ANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQI 607
            N+L   IP+ +GN L L YLNLSNN+    IP+++ KL HLS LDLS+N L  E+P QI
Sbjct: 551 GNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSLLDLSHNLLTGEIPSQI 610

Query: 608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---G 664
             ++SLEKLNL HNNLSG IP+ FE MH L  +DISYN+LQG IPNS  F++  +E   G
Sbjct: 611 QGLQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGSIPNSEAFQNVTIEVLQG 670

Query: 665 NKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTK 724
           NKGLCG++KGL  C+  ++ K  + K   +++FS L  +++L   IG  ++ Q R ++  
Sbjct: 671 NKGLCGSVKGLQPCENRSATK-GTHKAVFIIIFSLLGALLILSAFIGISLISQGRRNAKM 729

Query: 725 Q 725
           +
Sbjct: 730 E 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 347/714 (48%), Positives = 450/714 (63%), Gaps = 49/714 (6%)

Query: 18  SHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGIS 77
           S  ++SYS +E  ALLKWK SLQN + S L SW LYP N+TN S++  T  +PC  +   
Sbjct: 24  SDHVSSYSNEETQALLKWKASLQNHDHSSLLSWDLYPNNSTNSSTHLGTATSPCKCMN-- 81

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLD 137
                                              NLS     G IPPQ+G LS+L++LD
Sbjct: 82  -----------------------------------NLS-----GPIPPQIGLLSELKYLD 101

Query: 138 LGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
           L  NQ +G IP EIG L  L  L+   NQL+G IP EIGQL+ + ELAL  N L G IP 
Sbjct: 102 LSINQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELALYTNQLEGSIPA 161

Query: 198 SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257
           SLGNLSNLA  YL  N L DSIP  +GNL ++  +    N L G IP + GNL  L +LY
Sbjct: 162 SLGNLSNLAYLYLYENQLSDSIPPEMGNLTNLVEIYSDTNNLIGPIPSTFGNLKRLTVLY 221

Query: 258 LYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317
           L++N LSG IP  IGNL+SL  L L EN LSG IP SLG+LS LT++ L++N LS  IP 
Sbjct: 222 LFNNRLSGHIPPEIGNLKSLQGLSLYENNLSGPIPASLGDLSGLTLLHLYANQLSGPIPQ 281

Query: 318 ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            +GNLKSL  L L  NQLNG IP+S+GNL+NL  L+L +N   G++P+EIG L  +  LE
Sbjct: 282 EIGNLKSLVDLELSENQLNGSIPTSLGNLTNLETLFLRDNQLSGYIPQEIGKLHKLVVLE 341

Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           + TN+L G +P  I     L    + +NHLSGPIPKSL+N  +L R  F  N L+G + E
Sbjct: 342 IDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLKNCKNLTRALFGGNQLTGNISE 401

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
             G  PNL ++++S N+F+GE+S NW  +P+L    ++ NNI+GSIP + G S  L +LD
Sbjct: 402 VVGDCPNLEYINVSYNSFHGELSHNWGRYPRLQRLEMAWNNITGSIPEDFGISTDLTLLD 461

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
           +SSNH+ GEIP ++  + SL KLIL+ NQLSG +P ELGSL +L YLDLSAN+L   IP+
Sbjct: 462 LSSNHLFGEIPKKMGSVTSLWKLILNDNQLSGNIPPELGSLADLGYLDLSANRLNGSIPE 521

Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617
            +G+ L L YLNLSNN+    IP+++ KL HLS+LDLS+N L  ++P QI  ++SLE LN
Sbjct: 522 HLGDCLGLNYLNLSNNKLSHGIPVQMGKLGHLSQLDLSHNLLTGDIPPQIEGLQSLENLN 581

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCGNIKG 674
           L HNNLSGFIP+ FE M  LS +DISYN+LQGPIPNS  F+DA +E   GNKGLCGN+K 
Sbjct: 582 LSHNNLSGFIPKAFEEMLGLSDVDISYNQLQGPIPNSKAFRDATIEALKGNKGLCGNVKR 641

Query: 675 LPSCKAFTSCKQ----ASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRNDSTK 724
           L  CK  +   Q     S K   +++F  L  ++LL   IG  ++  RR  + +
Sbjct: 642 LRPCKYGSGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAARRERTPE 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484864|ref|XP_002273966.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 334/726 (46%), Positives = 447/726 (61%), Gaps = 46/726 (6%)

Query: 27  KEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCA-WVGISCNQAERII 85
           KEALALL WK SL  ++ S L+SW+                ++PC  W G++C++++ + 
Sbjct: 56  KEALALLTWKSSLHIRSQSFLSSWS---------------GVSPCNNWFGVTCHKSKSVS 100

Query: 86  SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG 145
           S+NL S GL GTL    F S P+LV L+L  N + G+IP ++G L  L +L L  N L+G
Sbjct: 101 SLNLESCGLRGTLYNLNFLSLPNLVTLDLYNNSLSGSIPQEIGLLRSLNNLKLSTNNLSG 160

Query: 146 VIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNL 205
            IPP IG+L  L +LY   N+L G IPQEIG L  +N+L L  NNL GPIPPS+GNL NL
Sbjct: 161 PIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNDLELSANNLSGPIPPSIGNLRNL 220

Query: 206 ANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265
              YL+ N L  SIP  +G L+S++ L+LS N L+G IP S+GNL NL  LYL++N LSG
Sbjct: 221 TTLYLHTNKLSGSIPQEIGLLRSLNDLELSTNNLNGPIPPSIGNLRNLTTLYLHTNKLSG 280

Query: 266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325
            IP  IG L SL  L+LS N L+G IP S+G L +LT + L +N LS  IP  +G L+SL
Sbjct: 281 SIPKEIGMLRSLNDLELSTNNLNGPIPPSIGKLRNLTTLYLHNNKLSGSIPLEIGLLRSL 340

Query: 326 SALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG 385
             L L  N L+G IP  IGNL NL  LYL NN F G +P EIG L+S+ +L L TN+L G
Sbjct: 341 FNLSLSTNNLSGPIPPFIGNLRNLTKLYLDNNRFSGSIPREIGLLRSLHDLALATNKLSG 400

Query: 386 GIPHSIGNLTELVLVNMCE------------------------NHLSGPIPKSLRNLTSL 421
            IP  I NL  L  +++ E                        NH +GPIP SLRN TSL
Sbjct: 401 PIPQEIDNLIHLKSLHLEENNFTGHLPQQMCLGGALENFTAMGNHFTGPIPMSLRNCTSL 460

Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
            RVR  +N L G + E FG +PNL F+DLS NN YGE+S  W     L +  +S NN+SG
Sbjct: 461 FRVRLERNQLEGNITEVFGVYPNLNFMDLSSNNLYGELSHKWGQCGSLTSLNISHNNLSG 520

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
            IP ++GE+ +L  LD+SSNH++G+IP +L KL S+  L+LS NQLSG +P E+G+L  L
Sbjct: 521 IIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLVLSNNQLSGNIPLEVGNLFNL 580

Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK 601
           ++L L++N L   IPK +G L KL +LNLS N+F + IP E+  +  L  LDLS N L  
Sbjct: 581 EHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPDEIGNMHSLQNLDLSQNMLNG 640

Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDAR 661
           ++P Q+  ++ LE LNL HN LSG IP  FE M +L+ +DIS N+L+GP+P+   F++A 
Sbjct: 641 KIPQQLGELQRLETLNLSHNELSGSIPSTFEDMLSLTSVDISSNQLEGPLPDIKAFQEAP 700

Query: 662 MEG---NKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQR 718
            E    N GLCGN  GL  C  FT   Q   K+ ++++ SS V ++ +   I F + ++ 
Sbjct: 701 FEAFMSNGGLCGNATGLKPCIPFT---QKKNKRSMILIISSTVFLLCISMGIYFTLYWRA 757

Query: 719 RNDSTK 724
           RN   K
Sbjct: 758 RNRKGK 763

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 337/706 (47%), Positives = 453/706 (64%), Gaps = 37/706 (5%)

Query: 21  IASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQ 80
           IAS S ++A +LLKW  +L NQ  S  + W L P N+TN ++    K +PC W+G+SCN+
Sbjct: 26  IASDSAEQANSLLKWAATLHNQKYSNRSPWPLLPENSTNPNA----KTSPCTWLGLSCNR 81

Query: 81  AERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGN 140
              ++ INL++ GLNGTL E +FS+FP L  L+LS N +  TIP ++  L KL  LDL +
Sbjct: 82  GGSVVRINLTTSGLNGTLHELSFSAFPDLEFLDLSCNSLSSTIPLEITQLPKLIFLDLSS 141

Query: 141 NQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLG 200
           NQL+GVIPP+                        IG L+ +N L L  N L G IP S+G
Sbjct: 142 NQLSGVIPPD------------------------IGLLTNLNTLRLSANRLDGSIPSSVG 177

Query: 201 NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
           NL+ LA  +L +N    SIP  +GNLK++  L +  N L+GSIP + G+L+ L  L+LY+
Sbjct: 178 NLTELAWLHLYDNRFSGSIPSEMGNLKNLVELFMDTNLLTGSIPSTFGSLTKLVQLFLYN 237

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
           N LSG IP  +G+L+SL  L L  N LSG IP SLG L+SLT++ L+ N LS  IP  LG
Sbjct: 238 NQLSGHIPQELGDLKSLTSLSLFGNNLSGPIPASLGGLTSLTILHLYQNQLSGTIPKELG 297

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
           NL SLS L L  N+L G IP+S+GNLS L LL+L NN   G +PE+I  L  +  L+L +
Sbjct: 298 NLNSLSNLELSENKLTGSIPASLGNLSRLELLFLKNNQLSGPIPEQIANLSKLSLLQLQS 357

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
           N+L G +P +I     L   ++ +N L GPIPKS+R+  SL R+    N   G + E FG
Sbjct: 358 NQLTGYLPQNICQSKVLQNFSVNDNRLEGPIPKSMRDCKSLVRLHLEGNQFIGNISEDFG 417

Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500
            +P L F+D+  N F+GEIS  W   P LGT ++S NNISG IP EIG + +LQ LD SS
Sbjct: 418 VYPYLQFVDIRYNKFHGEISSKWGMCPHLGTLLISGNNISGIIPPEIGNAARLQGLDFSS 477

Query: 501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIG 560
           N +VG IP +L KL SL ++ L  NQLS G+P E GSLT+L+ LDLSAN+    IP +IG
Sbjct: 478 NQLVGRIPKELGKLTSLVRVNLEDNQLSDGVPSEFGSLTDLESLDLSANRFNQSIPGNIG 537

Query: 561 NLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCH 620
           NL+KL YLNLSNNQF Q+IPI++ KL+HLSKLDLS NFL  E+P ++  M+SLE LNL  
Sbjct: 538 NLVKLNYLNLSNNQFSQEIPIQLGKLVHLSKLDLSQNFLIGEIPSELSGMQSLEVLNLSR 597

Query: 621 NNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCGNIKGLPS 677
           NNLSGFIP   + MH LS IDISYN+L+GP+P++  F+++ +E   GNKGLCG+++GL  
Sbjct: 598 NNLSGFIPGDLKEMHGLSSIDISYNKLEGPVPDNKAFQNSSIEAFQGNKGLCGHVQGLQP 657

Query: 678 CKAFTSCKQAS----RKKWVVVMFSSLVMIILLICLIGFKVLFQRR 719
           CK  +S +Q S     K+  +V+   L    L++  +G  + FQ +
Sbjct: 658 CKP-SSTEQGSSIKFHKRLFLVISLPLFGAFLILSFLGV-LFFQSK 701

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846638|ref|XP_002891200.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] gi|297337042|gb|EFH67459.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 347/795 (43%), Positives = 463/795 (58%), Gaps = 113/795 (14%)

Query: 28  EALALLKWKKSLQNQ-NSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIIS 86
           EA ALLKWK +  NQ +SS L+SW     +A    S+S T     +W G+ CN    I  
Sbjct: 33  EANALLKWKSTFTNQSHSSKLSSWV---NDANTNPSFSCT-----SWYGVFCNSRGSIEK 84

Query: 87  INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQH----------- 135
           +NL+   + GT Q+F FSS P+L  ++LS N   GTIPPQ GNLSKL +           
Sbjct: 85  LNLTDNAIEGTFQDFPFSSLPNLASIDLSMNRFSGTIPPQFGNLSKLIYFDLSTNHLTRE 144

Query: 136 -------------LDLGNNQLTGVIPPEIGH------------------------LNQLR 158
                        LDL +N LTGVIPP++G+                        L  L 
Sbjct: 145 IPPSLGNLKNLTVLDLHHNYLTGVIPPDLGNMESMTYLELSHNKLTGSIPSSLGNLKNLT 204

Query: 159 SLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS 218
            LY   N L G IP E+G +  + +L L  N L G IP SLGNL NL   YL++N L   
Sbjct: 205 VLYLYQNYLTGVIPPELGNMESMIDLELSTNKLTGSIPSSLGNLKNLTVLYLHHNYLTGV 264

Query: 219 IPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL 278
           IP  LGN++S+  L+LS N+L+GSIP SLGNL NL +LYLY N L+G IP  +GN+ES+ 
Sbjct: 265 IPPELGNMESMIDLELSDNKLTGSIPSSLGNLKNLTVLYLYKNYLTGVIPPELGNMESMT 324

Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
            LDLSEN+L+GSIP SLGNL +LTV+ L  N L+  IPP LGNL+S+  L L  N+L G 
Sbjct: 325 YLDLSENKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNLESMIDLELSDNKLTGS 384

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN----- 393
           IPSS+GNL NL +LYL++N   G +P E+G ++S+ +L L  N L G IP S GN     
Sbjct: 385 IPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMIDLALSQNNLTGSIPSSFGNFTKLE 444

Query: 394 ----------------------LTELVL----------VNMCE-----------NHLSGP 410
                                 LTEL+L           N+C+           NHL G 
Sbjct: 445 SLYLRDNHLSGTIPRGVANSSELTELLLDINNFTGFLPENICKGGKLQNFSLDYNHLEGH 504

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
           IPKSLR+  SL R +F  N   G + EAFG +P+L F+DLS N F GEIS NW+  PKLG
Sbjct: 505 IPKSLRDCKSLIRAKFVGNKFIGNISEAFGVYPDLDFIDLSHNKFNGEISSNWQKSPKLG 564

Query: 471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG 530
             I+S NNI+G+IP EI    +L  LD+S+N++ GE+P  +  L  L+KL+L+ N+LSG 
Sbjct: 565 ALIMSNNNITGAIPPEIWNMKQLGELDLSTNNLTGELPEAIGNLTGLSKLLLNGNKLSGR 624

Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590
           +P  L  LT L+ LDLS+N+  S IP++  + LKL  +NLS N F  +IP  + KL  L+
Sbjct: 625 VPTGLSFLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSKNNFDGRIP-GLTKLTQLT 683

Query: 591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP 650
            LDLS+N L  E+P Q+ +++SL+KLNL HNNLSGFIP  FE M  L+ IDIS N+L+GP
Sbjct: 684 HLDLSHNQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESMKALTFIDISNNKLEGP 743

Query: 651 IPNSTTFKDAR---MEGNKGLCGNI--KGLPSCKAFTSCKQ-ASRKKWVVVMFSSLVMII 704
           +P++  F++A    +EGN+GLC NI  + L SC+ F   K+  +   W++V      ++I
Sbjct: 744 LPDNPAFQNATSDALEGNRGLCSNIPKQRLKSCRGFQKPKKNGNLLVWILVPILG-ALVI 802

Query: 705 LLICLIGFKVLFQRR 719
           L IC   F    ++R
Sbjct: 803 LSICAGAFTYYIRKR 817

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219699|ref|NP_174809.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana] gi|75175345|sp|Q9LP24.1|Y1571_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At1g35710; Flags: Precursor gi|8778966|gb|AAF79881.1|AC021198_1 Contains similarity to receptor protein kinase-like protein from Arabidopsis thaliana gb|AL161513. It contains a eukaryotic protein kinase domain PF|00069. EST gb|AI997574 comes from this gene [Arabidopsis thaliana] gi|332193703|gb|AEE31824.1| putative leucine-rich repeat receptor-like protein [Arabidopsis thaliana]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/794 (42%), Positives = 461/794 (58%), Gaps = 114/794 (14%)

Query: 28  EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISI 87
           EA ALLKWK +  N  SS L+SW ++ AN       + T  +  +W G+SCN    I  +
Sbjct: 33  EANALLKWKSTFTN--SSKLSSW-VHDAN-------TNTSFSCTSWYGVSCNSRGSIEEL 82

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
           NL++ G+ GT Q+F F S  +L +++LS N++ GTIPPQ GNLSKL + DL  N LTG I
Sbjct: 83  NLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEI 142

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
            P +G+L  L  LY   N L   IP E+G +  + +LAL  N L G IP SLGNL NL  
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMV 202

Query: 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267
            YL  N L   IP  LGN++S++ L LS+N+L+GSIP +LGNL NL +LYLY N L+G I
Sbjct: 203 LYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVI 262

Query: 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327
           P  IGN+ES+  L LS+N+L+GSIP SLGNL +LT++SLF N L+  IPP LGN++S+  
Sbjct: 263 PPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMID 322

Query: 328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNN------------------------------ 357
           L L  N+L G IPSS+GNL NL +LYLY N                              
Sbjct: 323 LELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSI 382

Query: 358 ------------------GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL-- 397
                                G +P+E+G ++S+  L+L  N+L G +P S GN T+L  
Sbjct: 383 PSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLES 442

Query: 398 --VLVN---------------------------------MCE-----------NHLSGPI 411
             + VN                                 +C+           NHL GPI
Sbjct: 443 LYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPI 502

Query: 412 PKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT 471
           PKSLR+  SL R RF  N  +G ++EAFG +P+L F+D S N F+GEIS NW   PKLG 
Sbjct: 503 PKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGA 562

Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
            I+S NNI+G+IP EI    +L  LD+S+N++ GE+P  +  L +L++L L+ NQLSG +
Sbjct: 563 LIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRV 622

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591
           P  L  LT L+ LDLS+N   S IP++  + LKL  +NLS N+F   IP  + KL  L++
Sbjct: 623 PAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQ 681

Query: 592 LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651
           LDLS+N L  E+P Q+ +++SL+KL+L HNNLSG IP  FEGM  L+++DIS N+L+GP+
Sbjct: 682 LDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPL 741

Query: 652 PNSTTFKDAR---MEGNKGLCGNI--KGLPSCKAFTSCKQ-ASRKKWVVVMFSSLVMIIL 705
           P++ TF+ A    +E N GLC NI  + L  C+     K+  +   W++V     V++IL
Sbjct: 742 PDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPILG-VLVIL 800

Query: 706 LICLIGFKVLFQRR 719
            IC   F    ++R
Sbjct: 801 SICANTFTYCIRKR 814

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	725
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.946	0.656	0.404	1.5e-131
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.875	0.566	0.419	4.4e-123
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.881	0.579	0.338	1.1e-87
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.808	0.537	0.363	2.3e-87
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.823	0.542	0.355	8e-85
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.878	0.566	0.331	1.2e-83
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.823	0.477	0.352	1.4e-83
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.838	0.518	0.346	3e-83
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.740	0.470	0.374	3.9e-83
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.806	0.536	0.356	3.9e-83

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 287/709 (40%), Positives = 415/709 (58%)

Query:    25 STKEALALLKWXXXXXXXXXXXXTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERI 84
             + +EA ALLKW             S  + P    N SS+  +      W G++C+    I
Sbjct:    47 TVEEANALLKWKSTFTNQTSSSKLSSWVNP----NTSSFCTS------WYGVACSLGS-I 95

Query:    85 ISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLT 144
             I +NL++ G+ GT ++F FSS P+L  ++LS N   GTI P  G  SKL++ DL  NQL 
Sbjct:    96 IRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLV 155

Query:   145 GVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXX 204
             G IPPE+G L+ L +L+   N+L+G IP EIG+L+ + E+A+  N L GPIP S G    
Sbjct:   156 GEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTK 215

Query:   205 XXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264
                          SIP  +GNL ++  L L +N L+G IP S GNL N+ +L ++ N LS
Sbjct:   216 LVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLS 275

Query:   265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS 324
             G IP  IGN+ +L  L L  N+L+G IP +LGN+ +L V+ L+ N L+  IPP LG ++S
Sbjct:   276 GEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMES 335

Query:   325 LSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLR 384
             +  L +  N+L G +P S                    +P  I     +  L+L TN   
Sbjct:   336 MIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFT 395

Query:   385 GGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPN 444
             G +P +I    +L  + + +NH  GP+PKSLR+  SL RVRF  N+ SG + EAFG +P 
Sbjct:   396 GFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPT 455

Query:   445 LTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIV 504
             L F+DLS NNF+G++S NW    KL  FI+S N+I+G+IP EI    +L  LD+SSN I 
Sbjct:   456 LNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRIT 515

Query:   505 GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
             GE+P  ++ +  ++KL L+ N+LSG +P  +  LT L+YLDLS+N+  S IP ++ NL +
Sbjct:   516 GELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPR 575

Query:   565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
             L Y+NLS N   Q IP  + KL  L  LDLSYN L  E+  Q  ++++LE+L+L HNNLS
Sbjct:   576 LYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLS 635

Query:   625 GFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA---RMEGNKGLCGNI---KGLPSC 678
             G IP  F+ M  L+H+D+S+N LQGPIP++  F++A     EGNK LCG++   +GL  C
Sbjct:   636 GQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPC 695

Query:   679 KAFTSCKQASRKKWVVVMFSSLV--MIILLICLIGFKVLFQRRNDSTKQ 725
                +S K    +  ++ +   ++  +IIL +C  G  + F++R   TKQ
Sbjct:   696 SITSSKKSHKDRNLIIYILVPIIGAIIILSVCA-GIFICFRKR---TKQ 740

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
 Identities = 270/644 (41%), Positives = 381/644 (59%)

Query:    82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN 141
             E +  + LS   L G++   +  +  +L+ L L  N + G IPP++GN+  +  L L  N
Sbjct:   174 ESMTDLALSQNKLTGSIPS-SLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQN 232

Query:   142 QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGX 201
             +LTG IP  +G+L  L  LY   N L G IP EIG +  +  LAL  N L G IP SLG 
Sbjct:   233 KLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGN 292

Query:   202 XXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
                              IP  LGN++S+  L+LS N+L+GSIP SLGNL NL ILYLY N
Sbjct:   293 LKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYEN 352

Query:   262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGN 321
              L+G IP  +GN+ES++ L L+ N+L+GSIP S GNL +LT + L+ N L+  IP  LGN
Sbjct:   353 YLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGN 412

Query:   322 LKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTN 381
             ++S+  L L  N+L G +P S                    +P  +     +  L L TN
Sbjct:   413 MESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTN 472

Query:   382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGY 441
                G  P ++    +L  +++  NHL GPIPKSLR+  SL R RF  N  +G ++EAFG 
Sbjct:   473 NFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGI 532

Query:   442 HPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
             +P+L F+D S N F+GEIS NW   PKLG  I+S NNI+G+IP EI    +L  LD+S+N
Sbjct:   533 YPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTN 592

Query:   502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
             ++ GE+P  +  L +L++L L+ NQLSG +P  L  LT L+ LDLS+N   S IP++  +
Sbjct:   593 NLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDS 652

Query:   562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
              LKL  +NLS N+F   IP  + KL  L++LDLS+N L  E+P Q+ +++SL+KL+L HN
Sbjct:   653 FLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHN 711

Query:   622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDAR---MEGNKGLCGNI--KGLP 676
             NLSG IP  FEGM  L+++DIS N+L+GP+P++ TF+ A    +E N GLC NI  + L 
Sbjct:   712 NLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLK 771

Query:   677 SCKAFTSCKQ-ASRKKWVVVMFSSLVMIILLICLIGFKVLFQRR 719
              C+     K+  +   W++V     V++IL IC   F    ++R
Sbjct:   772 PCRELKKPKKNGNLVVWILVPILG-VLVILSICANTFTYCIRKR 814

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 220/649 (33%), Positives = 329/649 (50%)

Query:    77 SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHL 136
             +C+  E I+ +N +       ++     S  +L+  N   N + G++P ++GNL  L  L
Sbjct:   119 NCSSLE-ILKLNNNQFDGEIPVEIGKLVSLENLIIYN---NRISGSLPVEIGNLLSLSQL 174

Query:   137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196
                +N ++G +P  IG+L +L S     N + G +P EIG    +  L L  N L G +P
Sbjct:   175 VTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELP 234

Query:   197 PSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGIL 256
               +G                  IP  + N  S+ TL L KNQL G IP  LG+L +L  L
Sbjct:   235 KEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFL 294

Query:   257 YLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIP 316
             YLY N L+G IP  IGNL   +++D SEN L+G IP+ LGN+  L ++ LF N L+  IP
Sbjct:   295 YLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIP 354

Query:   317 PILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFEL 376
               L  LK+LS L L IN L G IP                      +P ++G+   ++ L
Sbjct:   355 VELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVL 414

Query:   377 ELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY 436
             ++  N L G IP  +   + ++++N+  N+LSG IP  +    +L ++R  +NNL G+  
Sbjct:   415 DMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFP 474

Query:   437 EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL 496
                    N+T ++L QN F G I     N   L    ++ N  +G +P EIG   +L  L
Sbjct:   475 SNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTL 534

Query:   497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
             +ISSN + GE+P ++     L +L +  N  SG +P E+GSL +L+ L LS N L   IP
Sbjct:   535 NISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIP 594

Query:   557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKSLEK 615
              ++GNL +L  L +  N F   IP E+  L  L   L+LSYN L  E+P ++ N+  LE 
Sbjct:   595 VALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEF 654

Query:   616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCG---N- 671
             L L +NNLSG IP  F  + +L   + SYN L GPIP       +   GN+GLCG   N 
Sbjct:   655 LLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISMSSFIGNEGLCGPPLNQ 714

Query:   672 -IKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRR 719
              I+  P   + ++ K    +   ++  ++ V+  + + LI   V   RR
Sbjct:   715 CIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRR 763

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 216/594 (36%), Positives = 313/594 (52%)

Query:    60 VSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNL-SFNI 118
             +SS+  ++ NPC WVGI CN+  ++  I L  M   G L          L  L+L S N+
Sbjct:    49 LSSWKASESNPCQWVGIKCNERGQVSEIQLQVMDFQGPLPATNLRQIKSLTLLSLTSVNL 108

Query:   119 VFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQL 178
               G+IP ++G+LS+L+ LDL +N L+G IP +I  L +L+ L  + N L G IP E+G L
Sbjct:   109 T-GSIPKELGDLSELEVLDLADNSLSGEIPVDIFKLKKLKILSLNTNNLEGVIPSELGNL 167

Query:   179 SLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF-DSIPLVLGNLKSISTLDLSKN 237
               + EL L  N L G IP ++G                   +P  +GN +S+ TL L++ 
Sbjct:   168 VNLIELTLFDNKLAGEIPRTIGELKNLEIFRAGGNKNLRGELPWEIGNCESLVTLGLAET 227

Query:   238 QLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGN 297
              LSG +P S+GNL  +  + LY++ LSGPIP  IGN   L  L L +N +SGSIP+S+G 
Sbjct:   228 SLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIGNCTELQNLYLYQNSISGSIPVSMGR 287

Query:   298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXX 357
             L  L  + L+ N+L   IP  LG    L  + L  N L G IP S               
Sbjct:   288 LKKLQSLLLWQNNLVGKIPTELGTCPELFLVDLSENLLTGNIPRSFGNLPNLQELQLSVN 347

Query:   358 XXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN 417
                  +PEE+     +  LE+  N++ G IP  IG LT L +    +N L+G IP+SL  
Sbjct:   348 QLSGTIPEELANCTKLTHLEIDNNQISGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQ 407

Query:   418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN 477
                L+ +  + NNLSG +        NLT L L  N   G I  +  N   L    ++ N
Sbjct:   408 CQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSNYLSGFIPPDIGNCTNLYRLRLNGN 467

Query:   478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS 537
              ++G+IP EIG    L  +DIS N ++G IP +++   SL  + L  N L+GG+P   G+
Sbjct:   468 RLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCTSLEFVDLHSNGLTGGLP---GT 524

Query:   538 LTE-LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
             L + LQ++DLS N L   +P  IG+L +L  LNL+ N+F  +IP E+     L  L+L  
Sbjct:   525 LPKSLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSGEIPREISSCRSLQLLNLGD 584

Query:   597 NFLGKEMPFQICNMKSLE-KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
             N    E+P ++  + SL   LNL  N+ +G IP  F  + NL  +D+S+N+L G
Sbjct:   585 NGFTGEIPNELGRIPSLAISLNLSCNHFTGEIPSRFSSLTNLGTLDVSHNKLAG 638

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 216/607 (35%), Positives = 306/607 (50%)

Query:   109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
             L  L L  N +FG+IP Q+GNLS LQ L + +N LTGVIPP +  L QLR +    N   
Sbjct:   141 LKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFS 200

Query:   169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKS 228
             G IP EI     +  L L  N L G +P  L                   IP  +GN+  
Sbjct:   201 GVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR 260

Query:   229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
             +  L L +N  +GSIP  +G L+ +  LYLY+N L+G IP  IGNL    ++D SENQL+
Sbjct:   261 LEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLT 320

Query:   289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
             G IP   G++ +L ++ LF N L   IP  LG L  L  L L IN+LNG IP  +     
Sbjct:   321 GFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPY 380

Query:   349 XXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408
                           +P  IG+  +   L++  N L G IP        L+L+++  N LS
Sbjct:   381 LVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLS 440

Query:   409 GPIPKSLRNLTSLERVRFNQNNLSGKV-YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFP 467
             G IP+ L+   SL ++    N L+G +  E F    NLT L+L QN   G IS +     
Sbjct:   441 GNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQ-NLTALELHQNWLSGNISADLGKLK 499

Query:   468 KLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQL 527
              L    ++ NN +G IP EIG   K+   +ISSN + G IP +L    ++ +L LS N+ 
Sbjct:   500 NLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKF 559

Query:   528 SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLI 587
             SG +  ELG L  L+ L LS N+L   IP S G+L +L  L L  N   + IP+E+ KL 
Sbjct:   560 SGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLT 619

Query:   588 HLS-KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646
              L   L++S+N L   +P  + N++ LE L L  N LSG IP     + +L   +IS N 
Sbjct:   620 SLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNN 679

Query:   647 LQGPIPNSTTFK---DARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMI 703
             L G +P++  F+    +   GN GLC + +    C+        S+  W++   S    I
Sbjct:   680 LVGTVPDTAVFQRMDSSNFAGNHGLCNSQRS--HCQPLVPHSD-SKLNWLI-NGSQRQKI 735

Query:   704 ILLICLI 710
             + + C++
Sbjct:   736 LTITCIV 742

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 216/652 (33%), Positives = 334/652 (51%)

Query:    77 SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHL 136
             +C++ E ++ +N +  G  G++     +    L   N+  N + G +P ++G+L  L+ L
Sbjct:   131 NCSKLE-VMFLNNNQFG--GSIP-VEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEEL 186

Query:   137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196
                 N LTG +P  +G+LN+L +     N   G IP EIG+   +  L L  N + G +P
Sbjct:   187 VAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELP 246

Query:   197 PSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGIL 256
               +G                  IP  +GNL S+ TL L  N L G IP  +GN+ +L  L
Sbjct:   247 KEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKL 306

Query:   257 YLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIP 316
             YLY N L+G IP  +G L  ++++D SEN LSG IP+ L  +S L ++ LF N L+  IP
Sbjct:   307 YLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIP 366

Query:   317 PILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFEL 376
               L  L++L+ L L IN L G IP                      +P+ +G    ++ +
Sbjct:   367 NELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVV 426

Query:   377 ELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY 436
             +   N+L G IP  I   + L+L+N+  N + G IP  +    SL ++R   N L+G+  
Sbjct:   427 DFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFP 486

Query:   437 EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL 496
                    NL+ ++L QN F G +        KL    ++ N  S ++P EI +   L   
Sbjct:   487 TELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTF 546

Query:   497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
             ++SSN + G IP ++A    L +L LS N   G +P ELGSL +L+ L LS N+    IP
Sbjct:   547 NVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIP 606

Query:   557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKSLEK 615
              +IGNL  L  L +  N F   IP ++  L  L   ++LSYN    E+P +I N+  L  
Sbjct:   607 FTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMY 666

Query:   616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME---GNKGLCG-N 671
             L+L +N+LSG IP  FE + +L   + SYN L G +P++  F++  +    GNKGLCG +
Sbjct:   667 LSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGH 726

Query:   672 IKGL-PSCKAF---TSCKQAS-RKKWVVVMFSSLVMIILLICLIGFKVLFQR 718
             ++   PS  ++   +S K  S R+  ++++ SS++  I L+ LI   V F R
Sbjct:   727 LRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLL-LIAIVVHFLR 777

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 1.4e-83, P = 1.4e-83
 Identities = 212/602 (35%), Positives = 310/602 (51%)

Query:    54 PANATNVSSYSKTKINPCAWVGISCNQAE--RIISINLSSMGLNGTLQEFAFSSFPHLVH 111
             P     +  ++   IN C+W G++C+     R+I++NL+ +GL G++  + F  F +L+H
Sbjct:    41 PQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIH 99

Query:   112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
             L+LS N + G IP  + NL+ L+ L L +NQLTG IP ++G L  +RSL    N+L G I
Sbjct:   100 LDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI 159

Query:   172 PQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSIST 231
             P+ +G L  +  LAL    L GPIP  LG                  IP  LGN   ++ 
Sbjct:   160 PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTV 219

Query:   232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
                ++N L+G+IP  LG L NL IL L +NSL+G IPS +G +  L  L L  NQL G I
Sbjct:   220 FTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLI 279

Query:   292 PISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI-XXXXXXX 350
             P SL +L +L  + L +N+L+  IP    N+  L  L L  N L+G +P SI        
Sbjct:   280 PKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLE 339

Query:   351 XXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
                         +P E+   +S+ +L+L  N L G IP ++  L EL  + +  N L G 
Sbjct:   340 QLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGT 399

Query:   411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
             +  S+ NLT+L+ +    NNL GK+ +       L  L L +N F GEI     N   L 
Sbjct:   400 LSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLK 459

Query:   471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG 530
                +  N+  G IP  IG   +L +L +  N +VG +P  L     LN L L+ NQLSG 
Sbjct:   460 MIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGS 519

Query:   531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590
             +P   G L  L+ L L  N L+  +P S+ +L  L  +NLS+N+    I        +LS
Sbjct:   520 IPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS 579

Query:   591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP 650
               D++ N    E+P ++ N ++L++L L  N L+G IP     +  LS +D+S N L G 
Sbjct:   580 -FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query:   651 IP 652
             IP
Sbjct:   639 IP 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 3.0e-83, P = 3.0e-83
 Identities = 215/621 (34%), Positives = 322/621 (51%)

Query:    71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNL 130
             C W GI+C+    ++S++L    L G L   A ++  +L  L+L+ N   G IP ++G L
Sbjct:    61 CNWTGITCDSTGHVVSVSLLEKQLEGVLSP-AIANLTYLQVLDLTSNSFTGKIPAEIGKL 119

Query:   131 SKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV--NQLHGPIPQEIGQLSLINELALCH 188
             ++L  L L  N  +G IP  I  L  +   Y D+  N L G +P+EI + S +  +   +
Sbjct:   120 TELNQLILYLNYFSGSIPSGIWELKNI--FYLDLRNNLLSGDVPEEICKTSSLVLIGFDY 177

Query:   189 NNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
             NNL G IP  LG                 SIP+ +G L +++ LDLS NQL+G IP   G
Sbjct:   178 NNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFG 237

Query:   249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
             NL NL  L L  N L G IP+ IGN  SL+QL+L +NQL+G IP  LGNL  L  + ++ 
Sbjct:   238 NLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYK 297

Query:   309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIG 368
             N L+S IP  L  L  L+ LGL  N L G I   I                    P+ I 
Sbjct:   298 NKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSIT 357

Query:   369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
              L+++  L +  N + G +P  +G LT L  ++  +N L+GPIP S+ N T L+ +  + 
Sbjct:   358 NLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSH 417

Query:   429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG 488
             N ++G++   FG   NLTF+ + +N+F GEI  +  N   L T  V+ NN++G++   IG
Sbjct:   418 NQMTGEIPRGFG-RMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIG 476

Query:   489 ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA 548
             +  KL++L +S N + G IP ++  L  LN L L  N  +G +P E+ +LT LQ L + +
Sbjct:   477 KLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYS 536

Query:   549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608
             N L   IP+ + ++  L  L+LSNN+F  +IP    KL  L+ L L  N     +P  + 
Sbjct:   537 NDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLK 596

Query:   609 NMKSLEKLNLCHNNLSGFIP-RCFEGMHNLS-HIDISYNELQGPIPNSTTFKDARME--- 663
             ++  L   ++  N L+G IP      + N+  +++ S N L G IP      +   E   
Sbjct:   597 SLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDL 656

Query:   664 GNKGLCGNI-KGLPSCK-AFT 682
              N    G+I + L +CK  FT
Sbjct:   657 SNNLFSGSIPRSLQACKNVFT 677

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 205/547 (37%), Positives = 295/547 (53%)

Query:    87 INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV 146
             ++LSS GL G +  ++ S   +L  L L+ N + G IPP +   SKL+ L L +N LTG 
Sbjct:   134 LDLSSNGLVGDIP-WSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGS 192

Query:   147 IPPEIGHLNQLRSLYFDVN-QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXX 205
             IP E+G L+ L  +    N ++ G IP EIG  S +  L L   ++ G +P SLG     
Sbjct:   193 IPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKL 252

Query:   206 XXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265
                          IP  LGN   +  L L +N LSGSIP  +G L+ L  L+L+ NSL G
Sbjct:   253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVG 312

Query:   266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325
              IP  IGN  +L  +DLS N LSGSIP S+G LS L    +  N  S  IP  + N  SL
Sbjct:   313 GIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSL 372

Query:   326 SALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRG 385
               L L  NQ++G+IPS +                   +P  +     +  L+L  N L G
Sbjct:   373 VQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTG 432

Query:   386 GIPHSI---GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442
              IP  +    NLT+L+L++   N LSG IP+ + N +SL R+R   N ++G++    G  
Sbjct:   433 TIPSGLFMLRNLTKLLLIS---NSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSL 489

Query:   443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
               + FLD S N  +G++     +  +L    +S N++ GS+P  +     LQVLD+S+N 
Sbjct:   490 KKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQ 549

Query:   503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
               G+IP  L +L SLNKLILS N  SG +P  LG  + LQ LDL +N+L   IP  +G++
Sbjct:   550 FSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDI 609

Query:   563 LKLRY-LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
               L   LNLS+N+   KIP ++  L  LS LDLS+N L  ++   + N+++L  LN+ +N
Sbjct:   610 ENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLA-PLANIENLVSLNISYN 668

Query:   622 NLSGFIP 628
             + SG++P
Sbjct:   669 SFSGYLP 675

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 212/594 (35%), Positives = 302/594 (50%)

Query:    61 SSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVF 120
             SS+     +PC WVG+ CN+   +  I L  M L G+L   +  S   L  L LS   + 
Sbjct:    47 SSWHVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLT 106

Query:   121 GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180
             G IP ++G+ ++L+ LDL +N L+G IP EI  L +L++L  + N L G IP EIG LS 
Sbjct:   107 GVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSG 166

Query:   181 INELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF-DSIPLVLGNLKSISTLDLSKNQL 239
             + EL L  N L G IP S+G                   +P  +GN +++  L L++  L
Sbjct:   167 LVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCENLVMLGLAETSL 226

Query:   240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLS 299
             SG +P S+GNL  +  + +Y++ LSGPIP  IG    L  L L +N +SGSIP ++G L 
Sbjct:   227 SGKLPASIGNLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLK 286

Query:   300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXX 359
              L  + L+ N+L   IP  LGN   L  +    N L G IP S                 
Sbjct:   287 KLQSLLLWQNNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKLENLQELQLSVNQI 346

Query:   360 XXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
                +PEE+     +  LE+  N + G IP  + NL  L +    +N L+G IP+SL    
Sbjct:   347 SGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQCR 406

Query:   420 SLERVRFNQNNLSGKV-YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
              L+ +  + N+LSG +  E FG   NLT L L  N+  G I  +  N   L    ++ N 
Sbjct:   407 ELQAIDLSYNSLSGSIPKEIFGLR-NLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNR 465

Query:   479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
             ++GSIP EIG    L  +DIS N +VG IP  ++   SL  L L  N LSG +   LG+ 
Sbjct:   466 LAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGCESLEFLDLHTNSLSGSL---LGTT 522

Query:   539 T--ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
                 L+++D S N L S +P  IG L +L  LNL+ N+   +IP E+     L  L+L  
Sbjct:   523 LPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEIPREISTCRSLQLLNLGE 582

Query:   597 NFLGKEMPFQICNMKSLE-KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
             N    E+P ++  + SL   LNL  N   G IP  F  + NL  +D+S+N+L G
Sbjct:   583 NDFSGEIPDELGQIPSLAISLNLSCNRFVGEIPSRFSDLKNLGVLDVSHNQLTG 636

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	725
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-101
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  333 bits (855), Expect = e-101
 Identities = 251/727 (34%), Positives = 362/727 (49%), Gaps = 89/727 (12%)

Query: 4   SILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSY 63
             L  ++  L LN S   A     E L LL   KS  N     L++W     N++     
Sbjct: 10  PYLIFMLFFLFLNFSMLHA-----EELELLLSFKSSINDPLKYLSNW-----NSSA---- 55

Query: 64  SKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTI 123
                + C W GI+CN + R++SI+LS   ++G +    F   P++  +NLS N + G I
Sbjct: 56  -----DVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPI 109

Query: 124 PPQVGNLS-KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLIN 182
           P  +   S  L++L+L NN  TG IP   G +  L +L    N L G IP +IG  S + 
Sbjct: 110 PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGS 242
            L L  N L G IP SL NL++L    L +N L   IP  LG +KS+  + L  N LSG 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 243 IPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLT 302
           IP+ +G L++L  L L  N+L+GPIPS +GNL++L  L L +N+LSG IP S+ +L  L 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 303 VMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF 362
            + L  NSLS  IP ++  L++L  L L  N   G IP ++ +L  L++L L++N F G 
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSI---GNLTELVLVNMCENHLSGPIPKSLRNLT 419
           +P+ +G   ++  L+L TN L G IP  +   GNL +L+L +   N L G IPKSL    
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSLGACR 404

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
           SL RVR   N+ SG++   F   P + FLD+S NN  G I+    + P L          
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL---------- 454

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
                         Q+L ++ N   G +P        L  L LS NQ SG +P +LGSL+
Sbjct: 455 --------------QMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           EL  L LS NKL   IP  + +  KL  L+LS+NQ   +IP    ++  LS+LDLS    
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS---- 555

Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF-- 657
                                N LSG IP+    + +L  ++IS+N L G +P++  F  
Sbjct: 556 --------------------QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Query: 658 -KDARMEGNKGLCGNIK--GLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKV 714
              + + GN  LCG     GLP CK      + +   W  +  +  +   L++ L+ F  
Sbjct: 596 INASAVAGNIDLCGGDTTSGLPPCKRV----RKTPSWWFYI--TCTLGAFLVLALVAFGF 649

Query: 715 LFQRRND 721
           +F R  +
Sbjct: 650 VFIRGRN 656

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 4e-15
 Identities = 37/92 (40%), Positives = 55/92 (59%)

Query: 352 LYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
           L L N G  GF+P +I  L+ +  + L  N +RG IP S+G++T L ++++  N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 412 PKSLRNLTSLERVRFNQNNLSGKVYEAFGYHP 443
           P+SL  LTSL  +  N N+LSG+V  A G   
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query: 180 LINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQL 239
            I+ L L +  L G IP  +  L +L +  L+ N +  +IP  LG++ S+  LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIG 272
           +GSIP SLG L++L IL L  NSLSG +P+ +G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 41/92 (44%), Positives = 54/92 (58%)

Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           I  L L    L G IP  +  L +L  + L  NS+ G IP  +G++ SL  LDLS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
           GSIP SLG L+SL +++L  NSLS  +P  LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 38/89 (42%), Positives = 55/89 (61%)

Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315
           L L +  L G IP+ I  L  L  ++LS N + G+IP SLG+++SL V+ L  NS +  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 316 PPILGNLKSLSALGLHINQLNGVIPSSIG 344
           P  LG L SL  L L+ N L+G +P+++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 5e-13
 Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 69  NPCA-----WVGISCNQAERIIS------INLSSMGLNGTLQEFAFSSFPHLVHLNLSFN 117
           +PC      W G  C Q +          + L + GL G +     S   HL  +NLS N
Sbjct: 395 DPCVPQQHPWSGADC-QFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGN 452

Query: 118 IVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQ 177
            + G IPP +G+++ L+ LDL  N   G IP  +G L  LR L  + N L G +P  +G 
Sbjct: 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Query: 178 LSL 180
             L
Sbjct: 513 RLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 36/87 (41%), Positives = 56/87 (64%)

Query: 210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS 269
           L+N  L   IP  +  L+ + +++LS N + G+IP SLG++++L +L L  NS +G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 270 VIGNLESLLQLDLSENQLSGSIPISLG 296
            +G L SL  L+L+ N LSG +P +LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 325 LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR 384
           +  LGL    L G IP+ I  L +L+ + L  N   G +P  +G + S+  L+L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 385 GGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
           G IP S+G LT L ++N+  N LSG +P +L     L R  FN  + +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 51/164 (31%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
           L L    LR +IP  I  L  L+ +NLS N     IP  +  +  L  LDLSYN     +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 604 PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARME 663
           P  +  + SL  LNL  N+LSG +P    G             L     N T        
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR-----------LLHRASFNFTD------- 524

Query: 664 GNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLI 707
            N GLCG I GL +C    S      K  + + F   V  + L+
Sbjct: 525 -NAGLCG-IPGLRACGPHLS---VGAK--IGIAFGVSVAFLFLV 561

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.7 bits (165), Expect = 7e-12
 Identities = 83/262 (31%), Positives = 119/262 (45%), Gaps = 12/262 (4%)

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
            N        L  L+NL +  L+NN + D  PL+     ++  LDLS N++  S+P  L 
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR 160

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           NL NL  L L  N LS  +P ++ NL +L  LDLS N++S  +P  +  LS+L  + L +
Sbjct: 161 NLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368
           NS+   +   L NLK+LS L L  N+L   +P SIGNLSNL  L L NN         +G
Sbjct: 219 NSIIE-LLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ--ISSISSLG 274

Query: 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN- 427
            L ++ EL+L  N L   +P     L  L L+      L     K    L +   +    
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGE 334

Query: 428 ----QNNLSGKVYEAFGYHPNL 445
               +     +         N 
Sbjct: 335 TSSPEALSILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 474 VSMNN--ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
           + ++N  + G IP +I +   LQ +++S N I G IP  L  + SL  L LS N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR-YLNLSNNQFIQKIP 580
           P  LG LT L+ L+L+ N L   +P ++G  L  R   N ++N  +  IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 34/89 (38%), Positives = 47/89 (52%)

Query: 136 LDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI 195
           L L N  L G IP +I  L  L+S+    N + G IP  +G ++ +  L L +N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 196 PPSLGNLSNLANFYLNNNLLFDSIPLVLG 224
           P SLG L++L    LN N L   +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
           L + +  + G IP  ++KL  L  + LS N + G +P  LGS+T L+ LDLS N     I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
           P+S+G L  LR LNL+ N    ++P  +  +L+H +  + + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 121 GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180
           G IP  +  L  LQ ++L  N + G IPP +G +  L  L    N  +G IP+ +GQL+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 181 INELALCHNNLYGPIPPSLGN-LSNLANFYLNNNLLFDSIP 220
           +  L L  N+L G +P +LG  L + A+F   +N     IP
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 85/230 (36%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ 166
            +L  L+LS N +  ++P  + NL  L++LDL  N L+  +P  + +L+ L +L    N+
Sbjct: 140 SNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226
           +   +P EI  LS + EL L  NN    +  SL NL NL+   L+NN L D +P  +GNL
Sbjct: 198 IS-DLPPEIELLSALEELDL-SNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNL 254

Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
            ++ TLDLS NQ+S SI  SLG+L+NL  L L  NSLS  +P +   L  L  L      
Sbjct: 255 SNLETLDLSNNQIS-SIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
           L     + L   S L   ++ SN  +S  P  L  L+SL+ L    N L+
Sbjct: 313 L---KALELKLNSILLNNNILSNGETS-SPEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 34/91 (37%), Positives = 45/91 (49%)

Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI 507
           L L      G I  +      L +  +S N+I G+IP  +G    L+VLD+S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
           P  L +L SL  L L+ N LSG +P  LG  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 5e-10
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query: 304 MSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFV 363
           + L +  L  FIP  +  L+ L ++ L  N + G IP S+G++++L +L L  N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 364 PEEIGYLKSIFELELCTNRLRGGIPHSIG 392
           PE +G L S+  L L  N L G +P ++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 86/266 (32%), Positives = 138/266 (51%), Gaps = 10/266 (3%)

Query: 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS 240
           +N LAL  ++    + PS  +     +    + +        L NL  + +LDL+ N+L 
Sbjct: 47  VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106

Query: 241 GSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ-LDLSENQLSGSIPISLGNLS 299
            +I   L  L+NL  L L +N+++  IP +IG L+S L+ LDLS+N++  S+P  L NL 
Sbjct: 107 SNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP 163

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           +L  + L  N LS  +P +L NL +L+ L L  N+++  +P  I  LS L  L L NN  
Sbjct: 164 NLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN-S 220

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
              +   +  LK++  LEL  N+L   +P SIGNL+ L  +++  N +S     SL +LT
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLT 277

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNL 445
           +L  +  + N+LS  +         L
Sbjct: 278 NLRELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 465 NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSL 524
                   +    N   S   E+ E   L  LD+ +N+I    P+      +L +L LS 
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 525 NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVE 584
           N++    P  L +L  L+ LDLS N L S +PK + NL  L  L+LS N+ I  +P E+E
Sbjct: 150 NKIESL-PSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIE 206

Query: 585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644
            L  L +LDLS N +  E+   + N+K+L  L L +N L   +P     + NL  +D+S 
Sbjct: 207 LLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264

Query: 645 NEL 647
           N++
Sbjct: 265 NQI 267

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 92/336 (27%), Positives = 152/336 (45%), Gaps = 13/336 (3%)

Query: 331 HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHS 390
             +    ++PSS+  L +L LL            E +  L  +  L+L  NRLR  I   
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNISE- 111

Query: 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDL 450
           +  LT L  +++  N+++  IP  +  L S  +     +N    +       PNL  LDL
Sbjct: 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDL 170

Query: 451 SQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510
           S N+   ++     N   L    +S N IS  +P EI     L+ LD+S+N I+ E+   
Sbjct: 171 SFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS 227

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
           L+ L +L+ L LS N+L   +P  +G+L+ L+ LDLS N++ S    S+G+L  LR L+L
Sbjct: 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDL 284

Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
           S N     +P+    L+ L +L L+     K +  ++    S+   N   +N     P  
Sbjct: 285 SGNSLSNALPLIA-LLLLLLELLLNLLLTLKALELKLN---SILLNNNILSNGETSSPEA 340

Query: 631 FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNK 666
              + +L+++    N L     N    K+    G+ 
Sbjct: 341 LSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSL 376

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 383 LRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442
           LRG IP+ I  L  L  +N+  N + G IP SL ++TSLE +  + N+ +G + E+ G  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 443 PNLTFLDLSQNNFYGEI 459
            +L  L+L+ N+  G +
Sbjct: 490 TSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 588 HLSKLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           +L  LDLS N L    +  F+   + +L+ L+L  NNL+   P  F G+ +L  +D+S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 646 EL 647
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 13/52 (25%)

Query: 28 EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCN 79
          +  ALL +K SL    S  L+SW             + +  +PC+W G++C+
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSW-------------NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 56/282 (19%), Positives = 95/282 (33%), Gaps = 59/282 (20%)

Query: 362 FVPEEIGYLKSIFELELCTNRLRGG------IPHSIGNLTELVLVNMCENHLSG---PIP 412
            +   +    S+ EL L  N           +   +     L  +++ +N L      + 
Sbjct: 42  ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

Query: 413 KSLRNLTSLERVRFNQNNLSG----KVYEAFGYH-PNLTFLDLSQNNFYGEISFNW---- 463
           +SL   +SL+ ++ N N L       + +      P L  L L +N   G          
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161

Query: 464 RNFPKLGTFIVSMNNISGSIPLEIGESFK----LQVLDISSNHIVGEIPVQLAKLFSLNK 519
           R    L    ++ N I  +    + E  K    L+VLD+++N +  E    LA+  +   
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--- 218

Query: 520 LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI-----PKSIGNLLKLRYLNLSNN- 573
                            SL  L+ L+L  N L            +   + L  L+LS N 
Sbjct: 219 -----------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 574 -------QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608
                     + +    EK   L +LDL  N  G+E    + 
Sbjct: 262 ITDDGAKDLAEVLA---EKESLL-ELDLRGNKFGEEGAQLLA 299

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/57 (36%), Positives = 26/57 (45%)

Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
           L+ LDLS N+L      +   L  L+ L+LS N      P     L  L  LDLS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
           +L  L LS N+L+         L  L+ LDLS N L S  P++   L  LR L+LS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSL 311
           NL  L L +N L+         L +L  LDLS N L+   P +   L SL  + L  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           +L+ L+L +N L+      F+G+ NL  +D+S N L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 51/290 (17%)

Query: 136 LDLGNNQLTGV--IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL-Y 192
           L + +N LT +  +PPE      LR+L    NQL        G L    EL++  N L +
Sbjct: 227 LVIPDNNLTSLPALPPE------LRTLEVSGNQLTSLPVLPPGLL----ELSIFSNPLTH 276

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252
            P  PS      L   ++  N L  S+P++   L+ +S   +S NQL+ S+P      S 
Sbjct: 277 LPALPS-----GLCKLWIFGNQL-TSLPVLPPGLQELS---VSDNQLA-SLP---ALPSE 323

Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
           L  L+ Y+N L+  +P++   L+   +L +S+NQL+ S+P     L  L     ++N L+
Sbjct: 324 LCKLWAYNNQLTS-LPTLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWA---YNNRLT 375

Query: 313 SFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL--SNLRLLYLYNNGFYGFVPEEIGYL 370
           S +P +   LK L   G  +  L  V+PS +  L  S  RL  L        +P      
Sbjct: 376 S-LPALPSGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSL------PMLPS----- 422

Query: 371 KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS 420
             +  L +  N+L   +P S+ +L+    VN+  N LS    ++LR +TS
Sbjct: 423 -GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITS 470

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	725
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.63
PLN03150	623	hypothetical protein; Provisional	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.17
KOG4341	483	consensus F-box protein containing LRR [General fu	95.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.4
KOG4341	483	consensus F-box protein containing LRR [General fu	95.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.65
KOG4308	478	consensus LRR-containing protein [Function unknown	93.41
KOG4308	478	consensus LRR-containing protein [Function unknown	92.89
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	91.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.02
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.58
smart00370	26	LRR Leucine-rich repeats, outliers.	87.58
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	85.96
PF15102	146	TMEM154: TMEM154 protein family	85.96
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	85.27
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	82.56
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.38
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	81.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.45
smart00370	26	LRR Leucine-rich repeats, outliers.	81.45
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	80.11

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-78  Score=725.64  Aligned_cols=584  Identities=36%  Similarity=0.572  Sum_probs=456.0

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCc
Q 041178           22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEF  101 (725)
Q Consensus        22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~  101 (725)
                      +...++|++||++||+++. ++.+.+.+|+   .+           .+||.|.||+|+..++|+.|+++++++.|.++ .
T Consensus        24 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~-----------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~   87 (968)
T PLN00113         24 SMLHAEELELLLSFKSSIN-DPLKYLSNWN---SS-----------ADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-S   87 (968)
T ss_pred             cCCCHHHHHHHHHHHHhCC-CCcccCCCCC---CC-----------CCCCcCcceecCCCCcEEEEEecCCCccccCC-h
Confidence            4456799999999999996 3446678895   33           68999999999987899999999999999886 6


Q ss_pred             ccCCCCCCcEEECCCCCCCccCchhcc-CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCC
Q 041178          102 AFSSFPHLVHLNLSFNIVFGTIPPQVG-NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL  180 (725)
Q Consensus       102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  180 (725)
                      .+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++|.+++.+|..++++++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            889999999999999999988887755 899999999999999988885  46889999999999999889999999999


Q ss_pred             CCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecc
Q 041178          181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS  260 (725)
Q Consensus       181 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  260 (725)
                      |++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            99999999999888888888999999999999988888888888888999999998888888888888888888888888


Q ss_pred             ccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178          261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP  340 (725)
Q Consensus       261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  340 (725)
                      |.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|
T Consensus       246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP  325 (968)
T ss_pred             ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence            88888888888888888888888888877777777777788888888777777777777777777777777777766666


Q ss_pred             ccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCC
Q 041178          341 SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS  420 (725)
Q Consensus       341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  420 (725)
                      ..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|.++..+++|+.+++                  
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l------------------  387 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL------------------  387 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC------------------
Confidence            66666666666666666666666655555555555555555555555555544444555554                  


Q ss_pred             CcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccC
Q 041178          421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS  500 (725)
Q Consensus       421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~  500 (725)
                            ++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+.+.+|..              
T Consensus       388 ------~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------  447 (968)
T PLN00113        388 ------FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR--------------  447 (968)
T ss_pred             ------cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh--------------
Confidence                  444444445555555555555555555555444444444444444444444433333333              


Q ss_pred             CcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccCh
Q 041178          501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP  580 (725)
Q Consensus       501 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  580 (725)
                                +..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+.++++|++|++++|++.+.+|
T Consensus       448 ----------~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        448 ----------KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             ----------hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence                      3334444444444444444444433 24677888888888887788888888889999999999999999


Q ss_pred             hhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCcCce
Q 041178          581 IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA  660 (725)
Q Consensus       581 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~  660 (725)
                      ..++++++|++|+|++|.+++.+|..++++++|+.|||++|++++.+|..+..+++|+++++++|++.|.+|..+++.++
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~  596 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI  596 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             ---eccCCCCCCCCC
Q 041178          661 ---RMEGNKGLCGNI  672 (725)
Q Consensus       661 ---~~~gn~~lc~~~  672 (725)
                         ++.||+.+||..
T Consensus       597 ~~~~~~~n~~lc~~~  611 (968)
T PLN00113        597 NASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhhhcCCccccCCc
Confidence               789999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.8e-62  Score=583.64  Aligned_cols=512  Identities=37%  Similarity=0.536  Sum_probs=404.6

Q ss_pred             CCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEE
Q 041178          131 SKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIG-QLSLINELALCHNNLYGPIPPSLGNLSNLANFY  209 (725)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  209 (725)
                      .+++.|++++|.++|.+|..|..+++|++|+|++|.+.+.+|..+. ++++|++|++++|++++.+|.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4688999999999998888899999999999999999888887765 888999999999988887775  4567788888


Q ss_pred             ccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccc
Q 041178          210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      +++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            88888777777777778888888888887777777777777777777777777777777777777777777777777776


Q ss_pred             ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC
Q 041178          290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY  369 (725)
Q Consensus       290 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  369 (725)
                      .+|..++++++|++|++++|.+++.+|..++++++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+      
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~------  300 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI------  300 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC------
Confidence            66666666666666666666666666655665666666655555555555555555555555555555554444      


Q ss_pred             CCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEe
Q 041178          370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD  449 (725)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  449 (725)
                                        |..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus       301 ------------------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~  362 (968)
T PLN00113        301 ------------------PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD  362 (968)
T ss_pred             ------------------ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence                              44444555555555555555555555555556666666666666666666666667777777


Q ss_pred             CcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC
Q 041178          450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG  529 (725)
Q Consensus       450 ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  529 (725)
                      +++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++
T Consensus       363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            77777777777777777778888888888888888888888899999999999998999999999999999999999999


Q ss_pred             CCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccC
Q 041178          530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN  609 (725)
Q Consensus       530 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  609 (725)
                      .+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|+.|+|++|.+.+.+|..+.+
T Consensus       443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence            999989999999999999999999888765 4589999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC----CCcCceeccCCCCCC
Q 041178          610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS----TTFKDARMEGNKGLC  669 (725)
Q Consensus       610 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~----~~~~~~~~~gn~~lc  669 (725)
                      +++|++|+|++|.+++.+|..|..+++|+.|++++|+++|.+|..    ..+..+.+.+|+..+
T Consensus       522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999999999999999999999999975    334555777887554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.9e-42  Score=336.41  Aligned_cols=486  Identities=31%  Similarity=0.436  Sum_probs=290.2

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      ..++.+.+++|.+... .+.+.++..|.+|++++|.++ ..|++++.+..++.++.++|.+. .+|+.++.+.+|+.++.
T Consensus        45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            4466667777766433 334566666677777777666 55666666666666666666665 55666666666666666


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP  266 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (725)
                      ++|.+. .+|++++.+..|+.++..+|++                        + ..|+++.++.+|..+++.+|++...
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i------------------------~-slp~~~~~~~~l~~l~~~~n~l~~l  175 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQI------------------------S-SLPEDMVNLSKLSKLDLEGNKLKAL  175 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhcccccc------------------------c-cCchHHHHHHHHHHhhccccchhhC
Confidence            666555 3444555555555555555554                        4 3344444444444444444444422


Q ss_pred             CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC-cC
Q 041178          267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI-GN  345 (725)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~  345 (725)
                      .|. .-+++.|++||...|.++ .+|+.++.+.+|+.|++..|++.. .| .|.+|..|++++++.|++. .+|... ..
T Consensus       176 ~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~  250 (565)
T KOG0472|consen  176 PEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKH  250 (565)
T ss_pred             CHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcc
Confidence            222 222555555555555543 455555555555555555555543 23 4555556666666665555 333332 35


Q ss_pred             CCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccC------CC
Q 041178          346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN------LT  419 (725)
Q Consensus       346 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~------l~  419 (725)
                      ++++..||+.+|++. ..|+.++.+++|+.||+++|.++ .+|..++++ .|+.|.+.+|.+... -..+.+      ++
T Consensus       251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLK  326 (565)
T ss_pred             cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHH
Confidence            555556666665554 34555555555555555555555 345555555 555555555544311 011100      01


Q ss_pred             CCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccC---CCcEE
Q 041178          420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF---KLQVL  496 (725)
Q Consensus       420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~---~L~~L  496 (725)
                      .|+. .+..-.++...-.      .-..-+.     ..............+.|++++-+++ .+|.....-.   -....
T Consensus       327 yLrs-~~~~dglS~se~~------~e~~~t~-----~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~V  393 (565)
T KOG0472|consen  327 YLRS-KIKDDGLSQSEGG------TETAMTL-----PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSV  393 (565)
T ss_pred             HHHH-hhccCCCCCCccc------ccccCCC-----CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEE
Confidence            1110 0000000000000      0000000     0000011122334455555555555 3454433322   36788


Q ss_pred             EccCCcccccCchhhhcCCCCCe-EeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178          497 DISSNHIVGEIPVQLAKLFSLNK-LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF  575 (725)
Q Consensus       497 ~Ls~n~l~~~~~~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  575 (725)
                      +++.|++. ++|..+..+..+.+ +.+++|.++ .+|..+..+++|..|+|++|.+.. +|..++.+..|+.||++.|.|
T Consensus       394 nfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  394 NFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRF  470 (565)
T ss_pred             ecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccccc
Confidence            88888887 67877777766655 455555554 888899999999999999998877 889999999999999999998


Q ss_pred             cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178          576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  648 (725)
                       ..+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+. .||+.++++++|++|++++|+|.
T Consensus       471 -r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  471 -RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence             488988888888888888889997666777999999999999999998 78999999999999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.8e-42  Score=331.75  Aligned_cols=489  Identities=29%  Similarity=0.381  Sum_probs=350.6

Q ss_pred             EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEcc
Q 041178           84 IISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFD  163 (725)
Q Consensus        84 v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  163 (725)
                      ...+.++.+.+.-..  ..+..+..+.+|++++|... ..|++++++..++.++.++|+++ .+|+.++.+.+|+.++.+
T Consensus        47 l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchhhcc--HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            345667776654332  46788999999999999885 56889999999999999999999 899999999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccC
Q 041178          164 VNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI  243 (725)
Q Consensus       164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  243 (725)
                      +|.+. .+|++++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++....|..+. ++.|++||...|.++ .+
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence            99998 78889999999999999999998 7788999999999999999999776666555 999999999999887 88


Q ss_pred             CccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCC-CCCCCccEEEccCCcCcccCcccccCC
Q 041178          244 PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNL  322 (725)
Q Consensus       244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l  322 (725)
                      |+.++.+.+|+.|++..|++. .+| .|.+|..|++++++.|++. .+|... .+++++.+||+.+|+++. .|..+.-+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHh
Confidence            999999999999999999998 566 7999999999999999998 566655 489999999999999986 68888889


Q ss_pred             CcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC-----CCCCCEEECcCccccccccccccCCCCC
Q 041178          323 KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY-----LKSIFELELCTNRLRGGIPHSIGNLTEL  397 (725)
Q Consensus       323 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L  397 (725)
                      ++|+.||+++|.++ .+|..++++ +|+.|.+.+|.+...-.+.+..     ++.|+. .+..-.++..  .. +..   
T Consensus       275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~s--e~-~~e---  345 (565)
T KOG0472|consen  275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQS--EG-GTE---  345 (565)
T ss_pred             hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCC--cc-ccc---
Confidence            99999999999998 578889999 8999999999875331111111     011111 0000000000  00 000   


Q ss_pred             cEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCC
Q 041178          398 VLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN  477 (725)
Q Consensus       398 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n  477 (725)
                      ..-+    ...+ ..+......+.+.|+++.-+++....+.|....                      -.-.+..+++.|
T Consensus       346 ~~~t----~~~~-~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~----------------------~~~Vt~VnfskN  398 (565)
T KOG0472|consen  346 TAMT----LPSE-SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK----------------------SEIVTSVNFSKN  398 (565)
T ss_pred             ccCC----CCCC-cccchhhhhhhhhhcccccccccCCHHHHHHhh----------------------hcceEEEecccc
Confidence            0000    0000 001112233444455554444433333332111                      111344445555


Q ss_pred             cccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccccccc
Q 041178          478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK  557 (725)
Q Consensus       478 ~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  557 (725)
                      ++. ++|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|+|.. .|+
T Consensus       399 qL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~  475 (565)
T KOG0472|consen  399 QLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPE  475 (565)
T ss_pred             hHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chH
Confidence            544 44554444444443333333344466667777777777777777666 577777777778888888887765 677


Q ss_pred             ccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178          558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       558 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      ++..+..++.+-.++|++...-|..+.++.+|.+|||.+|.+ ..+|..+++|++|++|++++|++.
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence            777777777777777777666666677888888888888888 456667888888888888888886

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-38  Score=321.00  Aligned_cols=394  Identities=24%  Similarity=0.210  Sum_probs=289.4

Q ss_pred             CCEEEccCCcCcccCCccccCC--CCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178          229 ISTLDLSKNQLSGSIPFSLGNL--SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL  306 (725)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  306 (725)
                      -+.||.+.+.+...--..+...  +.-+.|++++|.++...+..|.++++|+++++.+|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3456777776653211111111  23467999999999888888899999999999999987 68877667777999999


Q ss_pred             cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccc
Q 041178          307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG  386 (725)
Q Consensus       307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  386 (725)
                      .+|.|+.+-.+.++.++.|+.|||+.|.++..-...|..-.++++|+|++|.++..-...|..+.+|.+|.++.|+++..
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            99998888777888888888888888888855555666666778888888877766666666666666666666666644


Q ss_pred             ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCC
Q 041178          387 IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF  466 (725)
Q Consensus       387 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~  466 (725)
                      .+..|.++++|+.|+|..|++.                        -...-.|.++++|+.|.+..|++...-...|-.+
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~ir------------------------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIR------------------------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL  268 (873)
T ss_pred             CHHHhhhcchhhhhhcccccee------------------------eehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence            4445555555555555555554                        3333344455555555555555554444455555


Q ss_pred             CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccc
Q 041178          467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL  546 (725)
Q Consensus       467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  546 (725)
                      .+++.|+++.|++...-..++.++++|+.|++|+|.|....+..+..+++|++|+|++|+++...++.|..+..|++|+|
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            55555666666655555567777888888888888888888888888888888888888888778888888888889999


Q ss_pred             cccccccccccccccCCCCCEEeCCCCcCcccChh---hhhcccccccccccccccCccCcccccCCCCCCEEeCCCCcc
Q 041178          547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI---EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL  623 (725)
Q Consensus       547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  623 (725)
                      ++|.+..+-...|..+++|++|||++|.++..|-+   .|.++++|+.|++.+|++....-.+|..+..||+|||.+|.+
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            99988887777888888899999999988776554   477788999999999999666667889999999999999999


Q ss_pred             ccccCccccCCCCCCEEeCcCCCcc
Q 041178          624 SGFIPRCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       624 ~~~~p~~l~~l~~L~~L~ls~N~l~  648 (725)
                      ..+-|..|..+ .|++|.+..-.+.
T Consensus       429 aSIq~nAFe~m-~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  429 ASIQPNAFEPM-ELKELVMNSSSFL  452 (873)
T ss_pred             eeecccccccc-hhhhhhhcccceE
Confidence            88888999888 7888877554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=316.40  Aligned_cols=389  Identities=25%  Similarity=0.213  Sum_probs=289.0

Q ss_pred             CcEEEccCCcCCccCccccCCC--CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEc
Q 041178          205 LANFYLNNNLLFDSIPLVLGNL--KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL  282 (725)
Q Consensus       205 L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  282 (725)
                      -+.|+.+++.+.......+..+  +.-+.||+++|.+...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3557788877644322223222  34567999999999888889999999999999999998 67876666777999999


Q ss_pred             cCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccC
Q 041178          283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF  362 (725)
Q Consensus       283 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  362 (725)
                      .+|.++..-...+..++.|+.|||+.|.|+.+....|..-.++++|+|+.|.++..-...|..+.+|..|.|+.|+++..
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            99999987788889999999999999999988777888888999999999999988778899999999999999999988


Q ss_pred             CcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCC
Q 041178          363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH  442 (725)
Q Consensus       363 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  442 (725)
                      .+..|..++.|+.|++..|++.-.--..|..+++|+.+.+..|.+...-...|..+.+++.|+|+.|++...-..++-++
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            88888889999999999999884445567778888888888888776666677777777777777777776666666777


Q ss_pred             CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178          443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL  522 (725)
Q Consensus       443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  522 (725)
                      ..|+.|++++|.+..+.+..|..+++|++|+++.|+++..-+..+..+..|++|.|+.|++...-...|..+++|++|||
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            77777777777777666666666666666666666666655556666666666666666665555555566666666666


Q ss_pred             cCceecCCCC---ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccc
Q 041178          523 SLNQLSGGMP---FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLS  595 (725)
Q Consensus       523 ~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  595 (725)
                      ++|.++..+-   ..|..+++|+.|++.+|++..+.-.+|.++..|++|||.+|.+..+-|.+|..+ .|++|.++
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            6666554322   234555566666666666555444555555666666666665555555555555 55555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=332.13  Aligned_cols=463  Identities=30%  Similarity=0.355  Sum_probs=283.1

Q ss_pred             CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEcc
Q 041178          156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLS  235 (725)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  235 (725)
                      +|+.||+++|.+. ..|..+..+.+|+.|.++.|.+. ..|.+..++.+|+++.|.+|.+ ...|..+..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL-QSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh-hcCchhHHhhhcccccccc
Confidence            3444444444433 34444444444444444444444 3344444455555555554443 3345555555555555555


Q ss_pred             CCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178          236 KNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI  315 (725)
Q Consensus       236 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  315 (725)
                      .|.+. .+|..+..++.+..+..++|.....    ++... ++.+++..|.+.+.++..+..+..  .+++.+|.+..  
T Consensus       123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--  192 (1081)
T KOG0618|consen  123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--  192 (1081)
T ss_pred             hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--
Confidence            55544 4455555555555555555511111    11111 555555555555555555544444  45666665541  


Q ss_pred             cccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCC
Q 041178          316 PPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT  395 (725)
Q Consensus       316 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  395 (725)
                       ..+..+.+|+.+....|++...    --.-++|+.|+.++|.++...+.  ....+++.+++++|+++ .+|.|++.+.
T Consensus       193 -~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  193 -LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             -hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcc
Confidence             2344555666666665555421    11224566666666665522211  12335666666666666 3446666666


Q ss_pred             CCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC-CcEEEC
Q 041178          396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK-LGTFIV  474 (725)
Q Consensus       396 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l  474 (725)
                      +|+.++...|.++ .+|..+....+|+.+.+..|++... |.......+|++|++..|++....+..+.-... ++.+..
T Consensus       265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence            6666666666663 4555555556666666666666533 333444566666666666665333222222222 555555


Q ss_pred             CCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccc
Q 041178          475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW  554 (725)
Q Consensus       475 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  554 (725)
                      +.|++.......=...+.|+.|++.+|.++...-..+.++.+|+.|+|++|++.......+.+++.|++|+||+|+++. 
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-  421 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-  421 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-
Confidence            6565553221222335678999999999998888889999999999999999985555678899999999999999987 


Q ss_pred             cccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCCCccccccCccccC
Q 041178          555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIPRCFEG  633 (725)
Q Consensus       555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  633 (725)
                      +|.++..+..|++|...+|++. ..| ++..++.|+.+|+|.|.++.. +|..... ++|++||+++|.-.-.....|..
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~  498 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKV  498 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHH
Confidence            7899999999999999999985 667 889999999999999999654 4444433 89999999999854455567777


Q ss_pred             CCCCCEEeCcCC
Q 041178          634 MHNLSHIDISYN  645 (725)
Q Consensus       634 l~~L~~L~ls~N  645 (725)
                      +.++..+++.-|
T Consensus       499 l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  499 LKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhheecccC
Confidence            888888887776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=322.08  Aligned_cols=488  Identities=30%  Similarity=0.324  Sum_probs=343.4

Q ss_pred             CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178          108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC  187 (725)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (725)
                      .+..|++..|.+....-+.+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            3666666666554322334444555777777777776 66777777777777777777766 566777777777777777


Q ss_pred             CCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC
Q 041178          188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI  267 (725)
Q Consensus       188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  267 (725)
                      .|.+. ..|..+..+++|++|+++.|.+ +.+|..+..+..++.++.++|.-...    ++... .+.+++..|.+.+.+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence            77665 6677777777777777777776 56666677777777777777722211    22222 666677777777666


Q ss_pred             CccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCC
Q 041178          268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS  347 (725)
Q Consensus       268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  347 (725)
                      +..+..+..  .|+|.+|.+.   -..+..+.+|+.+....|++....-    .-++++.|+.+.|.++...+.  ..-.
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~  241 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPL  241 (1081)
T ss_pred             hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccc
Confidence            666666555  5777777765   1234566777777777777654321    225677777777777633221  1224


Q ss_pred             CCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECc
Q 041178          348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN  427 (725)
Q Consensus       348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~  427 (725)
                      +|++++++.|++++ +|++++.+.+|+.++..+|+++ .+|..+...++|+.+....|.+.. +|+...+++.|+.|++.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence            67778888887764 4577777888888888888875 677777777788888888887763 56667778888888888


Q ss_pred             CccccccccccccCCCC-CCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc
Q 041178          428 QNNLSGKVYEAFGYHPN-LTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE  506 (725)
Q Consensus       428 ~n~l~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~  506 (725)
                      .|++....+..+..... |..+..+.|++.......-...+.|+.|++.+|.++...-..+.....|+.|+|++|++...
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            88877655544444443 66777777776644433334567788889999988877666677788899999999998866


Q ss_pred             CchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcc
Q 041178          507 IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKL  586 (725)
Q Consensus       507 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  586 (725)
                      ....+.++..|+.|+|++|+++ .+|..+..+..|++|....|.+.. .| .+..++.|+.+|+|.|+++...-..--.-
T Consensus       399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence            6667888999999999999998 678889999999999999999886 66 78899999999999999876433322223


Q ss_pred             cccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178          587 IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN  621 (725)
Q Consensus       587 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  621 (725)
                      ++|++||+++|.-....-..|..++.+...++.-|
T Consensus       476 p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            78999999999853444456666777777777666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-33  Score=288.75  Aligned_cols=369  Identities=26%  Similarity=0.332  Sum_probs=229.5

Q ss_pred             CCCceeecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccc
Q 041178          252 NLGILYLYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL  330 (725)
Q Consensus       252 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  330 (725)
                      -.+-.++++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++... -..++.++.|+.+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            3444556666665 345555555666666666555554 4555555555555555555554432 223444455555555


Q ss_pred             ccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCC
Q 041178          331 HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP  410 (725)
Q Consensus       331 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  410 (725)
                      ..|++..                       .-+|..+..+..|+.|++++|+++ +.|..+.+-+++-+|++++|++..+
T Consensus        86 R~N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   86 RDNNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETI  141 (1255)
T ss_pred             hcccccc-----------------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccC
Confidence            5544421                       123444444444555555555444 4444444444555555555555433


Q ss_pred             CCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcc-cccCCccccc
Q 041178          411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI-SGSIPLEIGE  489 (725)
Q Consensus       411 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~-~~~~p~~~~~  489 (725)
                      ..+.|.+++.|-.|++++|++.. .|..+..+..|++|++++|.+.-.--..+..+++|++|.+++.+- ...+|.++..
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence            33334445555555555555542 233334455555555555554322222233344555555555332 2356777777


Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEe
Q 041178          490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN  569 (725)
Q Consensus       490 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  569 (725)
                      +.+|..+|+|.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|+.|+||.|+++. .|.++..+++|+.|+
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLY  297 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHH
Confidence            788888888888776 67888888888888888888887 444555667788888888888876 788888888888888


Q ss_pred             CCCCcCcc-cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178          570 LSNNQFIQ-KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       570 Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  648 (725)
                      +.+|+++- -||..++.+..|+++..++|.+ ...|+.+..|..|+.|.|++|++. ..|+.+.-++.|+.||+..|+--
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            88888753 4788888888888888888888 677888888888888888888876 57888888888888888888754


Q ss_pred             ccCC
Q 041178          649 GPIP  652 (725)
Q Consensus       649 g~ip  652 (725)
                      -.-|
T Consensus       376 VMPP  379 (1255)
T KOG0444|consen  376 VMPP  379 (1255)
T ss_pred             cCCC
Confidence            3333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.7e-33  Score=287.62  Aligned_cols=363  Identities=28%  Similarity=0.411  Sum_probs=234.6

Q ss_pred             CCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCcee
Q 041178          179 SLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY  257 (725)
Q Consensus       179 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  257 (725)
                      +-.+-.|+++|.++| ..|....++++++.|.|....+ ..+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            334555666666663 5666666777777777776665 456777777777777777777766 3445566777777777


Q ss_pred             ecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178          258 LYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN  336 (725)
Q Consensus       258 L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (725)
                      +..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-+|+|++|+|..+....|.++..|-.||+++|++.
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            7777764 346777888888888888888887 67888888888888888888888766666778888888888888887


Q ss_pred             ccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccc-ccccccccCCCCCcEEEcCCCcCCCCCCccc
Q 041178          337 GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR-GGIPHSIGNLTELVLVNMCENHLSGPIPKSL  415 (725)
Q Consensus       337 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l  415 (725)
                       .+|+.+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|.++
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl  241 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL  241 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence             66777888888888888888765433333445566777777765432 356777777777777777777776 467777


Q ss_pred             cCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCc
Q 041178          416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQ  494 (725)
Q Consensus       416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~  494 (725)
                      .++.+|+.|++++|+++..- .......+|++|++|.|+++ .+|..+..+++|+.|...+|+++- -+|+.++.+..|+
T Consensus       242 y~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            77777777777777766322 12223345666666666665 344555555555555555554432 2344455555555


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccc
Q 041178          495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK  550 (725)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (725)
                      ++..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+.-++.|+.||+..|+
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            5544444443 44444444444444444444444 344444444444444444443

>PLN03210 Resistant to P

Probab=99.92  E-value=1e-23  Score=252.94  Aligned_cols=358  Identities=22%  Similarity=0.259  Sum_probs=205.7

Q ss_pred             CCCEEEEEcCCCCCcc-ccCCcccCCCCCCcEEECCCCC------CCccCchhccCCC-CCCEEECCCCCCCCCCCccCc
Q 041178           81 AERIISINLSSMGLNG-TLQEFAFSSFPHLVHLNLSFNI------VFGTIPPQVGNLS-KLQHLDLGNNQLTGVIPPEIG  152 (725)
Q Consensus        81 ~~~v~~l~l~~~~l~~-~~~~~~~~~l~~L~~L~Ls~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~  152 (725)
                      +.+|.++.+.-..+.. .+...+|..+++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..| 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            3466666654433321 2334567788888888886543      2234566666654 5888888887776 566666 


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEE
Q 041178          153 HLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTL  232 (725)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  232 (725)
                      ...+|++|++++|.+. .+|..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..++++++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            4678888888888776 5666777788888888877665555553 6777888888888777667777777778888888


Q ss_pred             EccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCc
Q 041178          233 DLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS  312 (725)
Q Consensus       233 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (725)
                      ++++|..-+.+|..+ ++++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..+ .+++|++|++.++...
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            887765444666554 6777777777777655555532   346777777777765 455544 4566776666553321


Q ss_pred             c-------cCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc
Q 041178          313 S-------FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG  385 (725)
Q Consensus       313 ~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  385 (725)
                      .       ..+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|....
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence            1       111111223455555555555444555555555555555555554333444433 34455555555543332


Q ss_pred             cccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCC
Q 041178          386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN  453 (725)
Q Consensus       386 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n  453 (725)
                      .+|..   .++|+.|++++|.++ .+|.++..+++|+.|++++|+--..++.....+++|+.+++++|
T Consensus       840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            33321   234444555554444 23444444444444444443322223333334444444444443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=3.3e-23  Score=248.68  Aligned_cols=339  Identities=22%  Similarity=0.232  Sum_probs=209.8

Q ss_pred             chhccCCCCCCEEECCCCC------CCCCCCccCcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC
Q 041178          124 PPQVGNLSKLQHLDLGNNQ------LTGVIPPEIGHLN-QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP  196 (725)
Q Consensus       124 ~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  196 (725)
                      +.+|.++++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++++|.+. .+|
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            3467888999999886653      3335677776664 5889999888876 667766 4688889999888876 567


Q ss_pred             CCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCC
Q 041178          197 PSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLES  276 (725)
Q Consensus       197 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  276 (725)
                      ..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            7778888888888888765566664 7778888888888877666788888888888888888876666677655 6788


Q ss_pred             CCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccc-------cCCccCcCCCCC
Q 041178          277 LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG-------VIPSSIGNLSNL  349 (725)
Q Consensus       277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~L  349 (725)
                      |++|++++|...+.+|..   .++|+.|++++|.+.. +|..+ .+++|+.|++..+....       ..+......++|
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            888888887655555542   3577888888887754 44433 46677777666533210       111112223455


Q ss_pred             CEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCc
Q 041178          350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN  429 (725)
Q Consensus       350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  429 (725)
                      +.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|++++|
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n  856 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT  856 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence            566666555555555555555555555555554333444443 4555555555554433333321   234445555554


Q ss_pred             cccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCC
Q 041178          430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN  477 (725)
Q Consensus       430 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n  477 (725)
                      .++ .+|..+..+++|++|++++|+-...+|.....+++|+.+++++|
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            444 23344444444555554443333333333444444444444443

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=3.9e-25  Score=215.88  Aligned_cols=403  Identities=23%  Similarity=0.258  Sum_probs=210.9

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccC-CccccccCCCCCCCCCccEEEc
Q 041178          228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE-NQLSGSIPISLGNLSSLTVMSL  306 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L  306 (725)
                      .-..++|..|+|+..-+..|+.+++|+.|+|++|.|+.+-|.+|.++.++..|-+.+ |+|+......|.++..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            455667777777755556677777777777777777777777777777666655544 6666544455666777777777


Q ss_pred             cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccC------------CcccccCCCCCC
Q 041178          307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF------------VPEEIGYLKSIF  374 (725)
Q Consensus       307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------~~~~l~~l~~L~  374 (725)
                      .-|++.-...+.|..++++..|.+..|.+...-...|..+..++.+.+..|.+...            .|..+++.....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            77776666666677777777777777766633333666666667666666653211            111111111122


Q ss_pred             EEECcCccccccccccccCC-CCCcEEEcCCCcCCCCCC-ccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178          375 ELELCTNRLRGGIPHSIGNL-TELVLVNMCENHLSGPIP-KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ  452 (725)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~  452 (725)
                      ...+.+.++...-+..|... ..+..--.+.+...+.-| ..|..+++|+.|++++|+++++.+.+|.+..++++|.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            22222222221111111111 111110111121222222 3455556666666666666666666666666666666666


Q ss_pred             CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc-CchhhhcCCCCCeEeccCceecCCC
Q 041178          453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE-IPVQLAKLFSLNKLILSLNQLSGGM  531 (725)
Q Consensus       453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~  531 (725)
                      |++...-...|.++..|++|++.+|+|+...|.+|....+|.+|.+-.|.+.-. --.+++.       .|.++.-.| .
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~-~  379 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVG-N  379 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCC-C
Confidence            665554445555555566666666665555555555555555555555543210 0011110       011111111 1


Q ss_pred             CccccCccccccccccccccccc---ccccc---------ccCCCCCEEeCCCCcCcccChhhhhccccccccccccccc
Q 041178          532 PFELGSLTELQYLDLSANKLRSW---IPKSI---------GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL  599 (725)
Q Consensus       532 ~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~---------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  599 (725)
                      |. -+....++.+.+++..+...   .|++.         ..++-+.+..=-.|+....+|..+.  ..-.+|++.+|.+
T Consensus       380 ~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~  456 (498)
T KOG4237|consen  380 PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAI  456 (498)
T ss_pred             CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchh
Confidence            11 11223344444544433211   11111         1122232222112222233333222  2345788999998


Q ss_pred             CccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCC
Q 041178          600 GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN  645 (725)
Q Consensus       600 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  645 (725)
                       ..+|..  .+.+| .+|+++|+++..--..|.+++.|.+|-+|||
T Consensus       457 -~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  457 -TSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -cccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             456665  66788 8999999998777788899999999999887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.5e-24  Score=211.76  Aligned_cols=412  Identities=21%  Similarity=0.197  Sum_probs=211.9

Q ss_pred             CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccC-CcCcccCCccccCCCCCCceeecc
Q 041178          182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK-NQLSGSIPFSLGNLSNLGILYLYS  260 (725)
Q Consensus       182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~  260 (725)
                      .+++|..|.|+...|.+|+.+++|+.|||++|.++.+-|.+|..+++|..|-+.+ |+|+..-...|+.+..|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            4455555555555555555555555555555555555555555555554444433 555533333455555555555555


Q ss_pred             ccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178          261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP  340 (725)
Q Consensus       261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  340 (725)
                      |++.-.....|..++++..|.+.+|.+...--..|..+..++.+.+..|.+-.     ..+++.+..       .....|
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~~~  217 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAMNP  217 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhhch
Confidence            55554444455555555555555555542222244455555555554444211     011111110       001112


Q ss_pred             ccCcCCCCCCEEEccCCcCccCCccccc-CCCCCCEEECcCcccccccc-ccccCCCCCcEEEcCCCcCCCCCCccccCC
Q 041178          341 SSIGNLSNLRLLYLYNNGFYGFVPEEIG-YLKSIFELELCTNRLRGGIP-HSIGNLTELVLVNMCENHLSGPIPKSLRNL  418 (725)
Q Consensus       341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l  418 (725)
                      ..++...-.....+.+.++...-+..+. ..+++..-..+.+...+.-| ..|..+++|+.+++++|++++.-+.+|.+.
T Consensus       218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            2223333333333333333322222211 11111111111222222333 346777888888888888888777888888


Q ss_pred             CCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccC-CccccccCCCcEEE
Q 041178          419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI-PLEIGESFKLQVLD  497 (725)
Q Consensus       419 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~  497 (725)
                      ..++.|.|..|++.......|.++..|+.|++.+|+++...|..|.....|.+|.+-.|.+.-.- -.+++..       
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W-------  370 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW-------  370 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-------
Confidence            88888888888887777777788888888888888888888888888888888887766543100 0000000       


Q ss_pred             ccCCcccccCchhhhcCCCCCeEeccCceecC---CCCcc---------ccCcccccc-ccccccccccccccccccCCC
Q 041178          498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG---GMPFE---------LGSLTELQY-LDLSANKLRSWIPKSIGNLLK  564 (725)
Q Consensus       498 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~---------~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~  564 (725)
                      +..++..|..|-  ..-..++.+.+++..+..   ..|++         =..++-+.. ...|+..+. .+|..+.  ..
T Consensus       371 lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d  445 (498)
T KOG4237|consen  371 LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VD  445 (498)
T ss_pred             HhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--ch
Confidence            011111111110  001122333333322211   11111         112333332 233333333 2443322  34


Q ss_pred             CCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178          565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN  621 (725)
Q Consensus       565 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  621 (725)
                      -.++++.+|.++ .+|.+  .+.+| .+|+++|+++..--..|.++++|.+|-|++|
T Consensus       446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            567888888875 56666  56777 8899999987777778889999999888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.2e-20  Score=208.00  Aligned_cols=263  Identities=25%  Similarity=0.314  Sum_probs=142.9

Q ss_pred             ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178          301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT  380 (725)
Q Consensus       301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  380 (725)
                      -..|+++++.++. +|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|++++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            4566777777664 454443  356666777666663 443   23556666666666553 2321   23555555555


Q ss_pred             ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC
Q 041178          381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS  460 (725)
Q Consensus       381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  460 (725)
                      |.++ .+|..   .++|+.|++++|.++. +|.                           ..++|+.|++++|++++. |
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---------------------------~p~~L~~LdLS~N~L~~L-p  318 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---------------------------LPPGLQELSVSDNQLASL-P  318 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---------------------------cccccceeECCCCccccC-C
Confidence            5554 22221   1234444444444442 221                           123455555555555432 2


Q ss_pred             ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccc
Q 041178          461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE  540 (725)
Q Consensus       461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  540 (725)
                      ..   ...|+.|++++|.+++ +|..   ..+|++|++++|++++ +|..   ..+|+.|++++|++++ +|..   ..+
T Consensus       319 ~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~  383 (788)
T PRK15387        319 AL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG  383 (788)
T ss_pred             CC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence            11   1234455555555542 3321   1356666666666663 3322   2356666677776663 4432   245


Q ss_pred             cccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCC
Q 041178          541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCH  620 (725)
Q Consensus       541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  620 (725)
                      |+.|++++|++++ +|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            6777777777765 4432   2467777777777653 45432   35666777777774 5676777777777777777


Q ss_pred             CccccccCccc
Q 041178          621 NNLSGFIPRCF  631 (725)
Q Consensus       621 N~l~~~~p~~l  631 (725)
                      |++++.+|..+
T Consensus       455 N~Ls~~~~~~L  465 (788)
T PRK15387        455 NPLSERTLQAL  465 (788)
T ss_pred             CCCCchHHHHH
Confidence            77777666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.6e-20  Score=207.42  Aligned_cols=260  Identities=23%  Similarity=0.271  Sum_probs=186.3

Q ss_pred             CEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCc
Q 041178          350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN  429 (725)
Q Consensus       350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  429 (725)
                      ..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|..   .++|++|++++|+++. +|..   .++|+.|++.+|
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence            34444444444 2333332  245555555555542 3321   3566667777766663 3432   356777777777


Q ss_pred             cccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCch
Q 041178          430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV  509 (725)
Q Consensus       430 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  509 (725)
                      .++.. |.   ..++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +|.
T Consensus       273 ~L~~L-p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        273 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             chhhh-hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence            77643 22   23578899999999874 343   35789999999999986 4442   2468899999999975 453


Q ss_pred             hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178          510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL  589 (725)
Q Consensus       510 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  589 (725)
                      .   ..+|+.|+|++|++++ +|..   ..+|+.|++++|.+.. +|..   ..+|+.|++++|++++ +|..   .++|
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence            2   2479999999999994 5543   3678899999999987 6653   3579999999999974 5543   3679


Q ss_pred             ccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       590 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      +.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            999999999965 6753   357889999999998 7899999999999999999999988765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1e-19  Score=204.22  Aligned_cols=245  Identities=27%  Similarity=0.414  Sum_probs=115.5

Q ss_pred             CCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccC
Q 041178          133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN  212 (725)
Q Consensus       133 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  212 (725)
                      ...|+++++.++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            444555555544 3343332  34555555555554 3333332  34555555555544 2333322  2455555555


Q ss_pred             CcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccC
Q 041178          213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP  292 (725)
Q Consensus       213 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  292 (725)
                      |.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            5543 3343332  34555555555554 3343332  345555555555542 332221  245555555555542 33


Q ss_pred             CCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC
Q 041178          293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS  372 (725)
Q Consensus       293 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  372 (725)
                      ..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+.  ..
T Consensus       321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s  389 (754)
T PRK15370        321 ETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA  389 (754)
T ss_pred             cccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence            3222  455555555555554 333332  45555666665555 3443332  456666666666553 333322  24


Q ss_pred             CCEEECcCcccccccccc----ccCCCCCcEEEcCCCcCC
Q 041178          373 IFELELCTNRLRGGIPHS----IGNLTELVLVNMCENHLS  408 (725)
Q Consensus       373 L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~  408 (725)
                      |+.|++++|++. .+|..    ...++.+..+++.+|.++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            556666666665 33332    223355666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=4.9e-20  Score=192.73  Aligned_cols=279  Identities=20%  Similarity=0.207  Sum_probs=155.5

Q ss_pred             EEEccCCcCcc-CCcccccCCCCCCEEECcCcccccc----ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178          351 LLYLYNNGFYG-FVPEEIGYLKSIFELELCTNRLRGG----IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR  425 (725)
Q Consensus       351 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  425 (725)
                      .|+|..+.+++ ..+..+..+..|+.++++++.++..    ++..+...++++.++++++.+.+ .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            35566666652 2334444555667777776665432    33344445556666665555432 00000          


Q ss_pred             CcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC---CcEEECCCCcccc----cCCcccccc-CCCcEEE
Q 041178          426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK---LGTFIVSMNNISG----SIPLEIGES-FKLQVLD  497 (725)
Q Consensus       426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~---L~~L~l~~n~~~~----~~p~~~~~l-~~L~~L~  497 (725)
                             ..++..+..+++|++|++++|.+.+..+..+..+..   |+.|++++|++++    .+...+..+ ++|+.|+
T Consensus        71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~  143 (319)
T cd00116          71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV  143 (319)
T ss_pred             -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence                   112223334455555555555554333333322222   5555555555542    122233444 6677777


Q ss_pred             ccCCccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccccc----cccccccCCCC
Q 041178          498 ISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKL  565 (725)
Q Consensus       498 Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L  565 (725)
                      +++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            777776632    233455666777777777777642    223344456777777777776543    23345567778


Q ss_pred             CEEeCCCCcCcccChhhhhc-----ccccccccccccccCc----cCcccccCCCCCCEEeCCCCccccc----cCcccc
Q 041178          566 RYLNLSNNQFIQKIPIEVEK-----LIHLSKLDLSYNFLGK----EMPFQICNMKSLEKLNLCHNNLSGF----IPRCFE  632 (725)
Q Consensus       566 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~  632 (725)
                      ++|++++|++++.....+..     .+.|+.|++++|.++.    .+...+..+++|+++++++|.++..    ....+.
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~  303 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL  303 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence            88888888776543333322     2678888888887752    2344556667888888888888744    344444


Q ss_pred             CC-CCCCEEeCcCCCc
Q 041178          633 GM-HNLSHIDISYNEL  647 (725)
Q Consensus       633 ~l-~~L~~L~ls~N~l  647 (725)
                      .. +.|+++++.+|++
T Consensus       304 ~~~~~~~~~~~~~~~~  319 (319)
T cd00116         304 EPGNELESLWVKDDSF  319 (319)
T ss_pred             hcCCchhhcccCCCCC
Confidence            44 5678888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.9e-18  Score=191.53  Aligned_cols=278  Identities=24%  Similarity=0.379  Sum_probs=166.7

Q ss_pred             CCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEcc
Q 041178          276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLY  355 (725)
Q Consensus       276 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  355 (725)
                      +...|+++++.++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4678999998887 4676553  578999999998886 454443  47888888888877 4555443  367777777


Q ss_pred             CCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc
Q 041178          356 NNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV  435 (725)
Q Consensus       356 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  435 (725)
                      +|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.+++ +|..+.                   
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-------------------  303 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-------------------  303 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-------------------
Confidence            77776 3454432  35666666666666 3454432  355666666655553 222211                   


Q ss_pred             cccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCC
Q 041178          436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF  515 (725)
Q Consensus       436 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  515 (725)
                             ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+.  +
T Consensus       304 -------~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~  367 (754)
T PRK15370        304 -------SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--P  367 (754)
T ss_pred             -------hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--C
Confidence                   234455555555543 22211  2455556666665553 444332  56777777777776 3454442  5


Q ss_pred             CCCeEeccCceecCCCCccccCcccccccccccccccccccccc----ccCCCCCEEeCCCCcCcccChhhhhccccccc
Q 041178          516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI----GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK  591 (725)
Q Consensus       516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  591 (725)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|++.. +|..+    ..++.+..|++.+|+++.      ..+..|+.
T Consensus       368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~  437 (754)
T PRK15370        368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQR  437 (754)
T ss_pred             CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHH
Confidence            7888888888887 4555543  468888888888875 44433    345778888888888762      34445555


Q ss_pred             ccccccccCc-cCcccccCCCCCCE
Q 041178          592 LDLSYNFLGK-EMPFQICNMKSLEK  615 (725)
Q Consensus       592 L~Ls~N~l~~-~~p~~~~~l~~L~~  615 (725)
                      | ++.+.+.| .++...+.+..++.
T Consensus       438 L-l~s~~~~gp~i~~~~~~~~~l~~  461 (754)
T PRK15370        438 L-MSSVGYQGPRVLFAMGDFSIVRV  461 (754)
T ss_pred             h-hhcccccCCcccccccccccccc
Confidence            5 33343333 34444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.1e-19  Score=187.96  Aligned_cols=277  Identities=22%  Similarity=0.232  Sum_probs=167.1

Q ss_pred             cccccccccc-ccCCccCcCCCCCCEEEccCCcCccC----CcccccCCCCCCEEECcCccccc------cccccccCCC
Q 041178          327 ALGLHINQLN-GVIPSSIGNLSNLRLLYLYNNGFYGF----VPEEIGYLKSIFELELCTNRLRG------GIPHSIGNLT  395 (725)
Q Consensus       327 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~  395 (725)
                      .|+|..+.+. +.....+..+..|+.++++++.++..    ++..+...+++++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777776 34445566778899999999998543    45556677889999999987762      2334555667


Q ss_pred             CCcEEEcCCCcCCCCCCccccCCCC---CcEEECcCcccccc----ccccccCC-CCCCEEeCcCCccccccCccccCCC
Q 041178          396 ELVLVNMCENHLSGPIPKSLRNLTS---LERVRFNQNNLSGK----VYEAFGYH-PNLTFLDLSQNNFYGEISFNWRNFP  467 (725)
Q Consensus       396 ~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~  467 (725)
                      +|+.|++++|.+.+..+..+..+..   |+.|++++|++++.    +...+..+ ++|+.|++++|.+++....      
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------  155 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------  155 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence            7777777777776554444443333   66666666655421    12223333 4555555555554421110      


Q ss_pred             CCcEEECCCCcccccCCccccccCCCcEEEccCCccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCcc
Q 041178          468 KLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLT  539 (725)
Q Consensus       468 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~  539 (725)
                                    .++..+..+.+|++|++++|.+.+.    ++..+..+++|+.|++++|.+++.    ++..+..++
T Consensus       156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence                          1222334445566666666665532    223344455677777777766533    233445667


Q ss_pred             ccccccccccccccccccccc-----cCCCCCEEeCCCCcCcc----cChhhhhcccccccccccccccCcc----Cccc
Q 041178          540 ELQYLDLSANKLRSWIPKSIG-----NLLKLRYLNLSNNQFIQ----KIPIEVEKLIHLSKLDLSYNFLGKE----MPFQ  606 (725)
Q Consensus       540 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  606 (725)
                      +|++|++++|.+.+.....+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            777777777777653222222     23678888888888762    2344556667888888888888754    3334


Q ss_pred             ccCC-CCCCEEeCCCCcc
Q 041178          607 ICNM-KSLEKLNLCHNNL  623 (725)
Q Consensus       607 ~~~l-~~L~~L~Ls~N~l  623 (725)
                      +... +.|++|++.+|.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            4444 6788888888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.9e-19  Score=155.16  Aligned_cols=165  Identities=30%  Similarity=0.541  Sum_probs=119.8

Q ss_pred             ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178          102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI  181 (725)
Q Consensus       102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  181 (725)
                      .+..+.+++.|.||+|.++ .+|+.+..+.+|++|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            4566677888888888875 45667888888888888888888 67888888888888888888877 778888888888


Q ss_pred             CEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecc
Q 041178          182 NELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS  260 (725)
Q Consensus       182 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  260 (725)
                      +.||+.+|++.. .+|..|..++.|+.|++++|.+ ..+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            888888887764 4666677777777777777766 456666677777777777666665 5566666666666666666


Q ss_pred             ccccccCCcccc
Q 041178          261 NSLSGPIPSVIG  272 (725)
Q Consensus       261 n~l~~~~p~~l~  272 (725)
                      |.++ .+|+.++
T Consensus       183 nrl~-vlppel~  193 (264)
T KOG0617|consen  183 NRLT-VLPPELA  193 (264)
T ss_pred             ceee-ecChhhh
Confidence            6665 3444343

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=6.1e-19  Score=153.16  Aligned_cols=163  Identities=33%  Similarity=0.518  Sum_probs=120.9

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      -++.+...|.||+|.++ .+|+.+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            35666778888888888 67778888888888888888887 67778888888888888877776 66777888888888


Q ss_pred             EEccCCcCC-ccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCc
Q 041178          208 FYLNNNLLF-DSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ  286 (725)
Q Consensus       208 L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  286 (725)
                      ||+.+|.+. ..+|..|..+..|+.|+++.|.+. .+|.+++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            888777765 356666767777777777777776 66777777777777777777665 466667777777777777777


Q ss_pred             cccccCCCCC
Q 041178          287 LSGSIPISLG  296 (725)
Q Consensus       287 l~~~~p~~l~  296 (725)
                      ++ .+|+.++
T Consensus       185 l~-vlppel~  193 (264)
T KOG0617|consen  185 LT-VLPPELA  193 (264)
T ss_pred             ee-ecChhhh
Confidence            66 4554444

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=8.5e-16  Score=172.39  Aligned_cols=115  Identities=30%  Similarity=0.475  Sum_probs=92.5

Q ss_pred             CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCc
Q 041178          564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS  643 (725)
Q Consensus       564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  643 (725)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCccccCCCC-----CCcCceeccCCCCCCCCCCCCCCCC
Q 041178          644 YNELQGPIPNS-----TTFKDARMEGNKGLCGNIKGLPSCK  679 (725)
Q Consensus       644 ~N~l~g~ip~~-----~~~~~~~~~gn~~lc~~~~~~~~c~  679 (725)
                      +|+++|.+|..     .....+.+.+|+++|+.+. .+.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence            88888888864     1223458899999999764 46665

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=2.8e-15  Score=168.20  Aligned_cols=148  Identities=32%  Similarity=0.541  Sum_probs=89.6

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC-----ccCcceeCC---C--CCEEEEEcCC
Q 041178           22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPC-----AWVGISCNQ---A--ERIISINLSS   91 (725)
Q Consensus        22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C-----~w~gv~C~~---~--~~v~~l~l~~   91 (725)
                      +...++|.+||+++|+++..+.   ..+|.    +            ++|     .|.||.|..   .  .+|+.|+|++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~----g------------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~  427 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL---RFGWN----G------------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN  427 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc---cCCCC----C------------CCCCCcccccccceeeccCCCCceEEEEEECCC
Confidence            4456789999999999986432   24785    2            333     799999952   1  1366666666


Q ss_pred             CCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCC
Q 041178           92 MGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI  171 (725)
Q Consensus        92 ~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  171 (725)
                      +.+.|.++ ..++.+++|++|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|+.++++++|++|+|++|.++|.+
T Consensus       428 n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i  506 (623)
T PLN03150        428 QGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV  506 (623)
T ss_pred             CCccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence            66666555 35555666666666666665556655566666666666666666555555555555555555555555555


Q ss_pred             CccccCC-CCCCEEEcCCC
Q 041178          172 PQEIGQL-SLINELALCHN  189 (725)
Q Consensus       172 p~~~~~l-~~L~~L~L~~n  189 (725)
                      |..++.. .++..+++.+|
T Consensus       507 P~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        507 PAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             ChHHhhccccCceEEecCC
Confidence            5554432 23344444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=7.1e-13  Score=136.57  Aligned_cols=192  Identities=34%  Similarity=0.475  Sum_probs=113.0

Q ss_pred             CCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEecc
Q 041178          444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILS  523 (725)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  523 (725)
                      .-...|++.|++. .+|..+..|-.|+.+.+..|.+. .+|..++.+..|+++||+.|+++ ..|..+..++ |+.|-++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3445677777765 45666666666666666666655 56666666666666666666665 4444444444 6666666


Q ss_pred             CceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccC
Q 041178          524 LNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM  603 (725)
Q Consensus       524 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  603 (725)
                      +|+++ .+|..++....|..||.+.|.+.. +|..++++.+|+.|.+..|++. ..|.++..| .|..||+|+|++ ..|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki-s~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI-SYL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce-eec
Confidence            66666 556566666666666666666655 4555666666666666666653 444455533 355566666666 445


Q ss_pred             cccccCCCCCCEEeCCCCccccccCccc---cCCCCCCEEeCcCC
Q 041178          604 PFQICNMKSLEKLNLCHNNLSGFIPRCF---EGMHNLSHIDISYN  645 (725)
Q Consensus       604 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N  645 (725)
                      |-.|.+|+.|++|-|.+|.+. +.|..+   +..+-.++|+..-+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            666666666666666666665 333332   12233445555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=5.1e-11  Score=128.26  Aligned_cols=154  Identities=40%  Similarity=0.578  Sum_probs=81.9

Q ss_pred             CCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCC
Q 041178          492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLS  571 (725)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  571 (725)
                      +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++++|++.. +|.....+..|+++.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhhhhhhhc
Confidence            4555555555554 22334455555555555555555 333333345556666666666554 34333444446666666


Q ss_pred             CCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178          572 NNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI  651 (725)
Q Consensus       572 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  651 (725)
                      +|++. .++..+..+..+..+.+.+|++. .++..++.+++++.|++++|.++. ++. +..+.+++.|++++|.+....
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence            66422 34445555556666666666652 224455566666666666666652 222 555666666666666655443


Q ss_pred             C
Q 041178          652 P  652 (725)
Q Consensus       652 p  652 (725)
                      |
T Consensus       294 ~  294 (394)
T COG4886         294 P  294 (394)
T ss_pred             h
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=7.4e-11  Score=126.99  Aligned_cols=198  Identities=39%  Similarity=0.572  Sum_probs=110.2

Q ss_pred             EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLN-QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      .++++.+.+...+. .+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555433222 2444466666666666666 4555555553 6666666666665 44445666666666666666


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCc
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS  269 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  269 (725)
                      ++. .+|...+..++|+.|++++|.+. .+|..+.....|+++.+++|.+. ..+..+.++.++..+.+.+|.+.. .+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence            666 33444445666666666666653 34443344444666666666432 334445555666666655555542 244


Q ss_pred             cccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcc
Q 041178          270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP  317 (725)
Q Consensus       270 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  317 (725)
                      .++.++++++|++++|.++. ++. ++.+.+++.|++++|.+....+.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence            45555566666666666652 222 55556666666666665554443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=2.4e-12  Score=132.74  Aligned_cols=174  Identities=29%  Similarity=0.414  Sum_probs=89.9

Q ss_pred             CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178          106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA  185 (725)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (725)
                      +..-...|++.|.+. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|.+|||+.|++. ..|..+..|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344445556666553 45555555666666666666665 55556666666666666666555 4444444433 45555


Q ss_pred             cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178          186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      +++|+++ .+|+.++....|..|+.+.|.+ ..+|..++++.+|+.|.+..|++. .+|+.+.. -.|..||++.|+++ 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence            5555554 4445555555555555555554 233444455555555555555544 33444442 23444555555554 


Q ss_pred             cCCccccCCCCCCEEEccCCccc
Q 041178          266 PIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      .+|-.|.+|..|++|.|.+|.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            34444555555555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=4e-11  Score=114.17  Aligned_cols=133  Identities=23%  Similarity=0.254  Sum_probs=98.0

Q ss_pred             CCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccc
Q 041178          514 LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD  593 (725)
Q Consensus       514 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  593 (725)
                      ...|+++||++|.++ .+.+++.-.+.++.|++|+|.+...  +.+..+++|+.||||+|.++. +-.+-..+-++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            345777888888877 5666677778888888888888763  347778888888888888753 333334566778888


Q ss_pred             ccccccCccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCCCEEeCcCCCccccCC
Q 041178          594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       594 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      |++|.+..  -+.++.+-+|..||+++|++.... -..+++++.|+.+.+.+||+.+.+.
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            88888833  235677888889999999886432 3567888899999999999886543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=2.2e-11  Score=118.94  Aligned_cols=246  Identities=23%  Similarity=0.269  Sum_probs=121.3

Q ss_pred             cccCCCCCCEEECcCcccccc----ccccccCCCCCcEEEcCCCcCCC----CCCcc-------ccCCCCCcEEECcCcc
Q 041178          366 EIGYLKSIFELELCTNRLRGG----IPHSIGNLTELVLVNMCENHLSG----PIPKS-------LRNLTSLERVRFNQNN  430 (725)
Q Consensus       366 ~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~p~~-------l~~l~~L~~L~l~~n~  430 (725)
                      .+..+.+++.+++++|.+...    +...+.+.++|+..++++- ++|    .+|..       +..+++|+.++|+.|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344566777888888876533    2233445566666666542 222    23322       2334455555555554


Q ss_pred             cccccccc----ccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc
Q 041178          431 LSGKVYEA----FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE  506 (725)
Q Consensus       431 l~~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~  506 (725)
                      +....+..    +..+..|++|.+.+|.+...-...++.  .|..|.         .......-+.|+++...+|++...
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence            44333322    223444444444444432110000000  000000         011123345566666666665322


Q ss_pred             ----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccccc----cccccccCCCCCEEeCCCCc
Q 041178          507 ----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQ  574 (725)
Q Consensus       507 ----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  574 (725)
                          +...|..++.|+.+.++.|.+...    +...+..+++|++|||.+|.++..    +...+..+++|++|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                223455566666666666665421    223456667777777777766432    23445566667777777776


Q ss_pred             CcccChhhh-----hcccccccccccccccCcc----CcccccCCCCCCEEeCCCCcc
Q 041178          575 FIQKIPIEV-----EKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNL  623 (725)
Q Consensus       575 l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l  623 (725)
                      +...-..++     ...++|++|.+.+|.++..    +-..+...+.|+.|+|++|++
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            654433332     1245666666666666433    222334456666666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=1.9e-11  Score=119.29  Aligned_cols=246  Identities=22%  Similarity=0.228  Sum_probs=162.7

Q ss_pred             cCcCCCCCCEEEccCCcCccC----CcccccCCCCCCEEECcCccccc----cccc-------cccCCCCCcEEEcCCCc
Q 041178          342 SIGNLSNLRLLYLYNNGFYGF----VPEEIGYLKSIFELELCTNRLRG----GIPH-------SIGNLTELVLVNMCENH  406 (725)
Q Consensus       342 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~-------~~~~l~~L~~L~l~~n~  406 (725)
                      .+..+..++.+++++|.+...    +...+...+.|+..++++- ++|    .+|.       .+..+++|++++||.|.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            456778999999999988543    3345566778888887753 333    3443       34557799999999999


Q ss_pred             CCCCCCcc----ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCccccc
Q 041178          407 LSGPIPKS----LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGS  482 (725)
Q Consensus       407 l~~~~p~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  482 (725)
                      +.-.-++.    +..+..|++|.+.+|.+...--..++.  .|..+.  .++.       ...-+.|+++..++|++...
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk-------~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK-------AASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc-------cCCCcceEEEEeeccccccc
Confidence            87554443    456899999999999886332222111  111111  1111       12334556666665555421


Q ss_pred             ----CCccccccCCCcEEEccCCcccc----cCchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccc
Q 041178          483 ----IPLEIGESFKLQVLDISSNHIVG----EIPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANK  550 (725)
Q Consensus       483 ----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  550 (725)
                          +...+...+.|+.+.++.|.+..    .+...+..|++|+.|||.+|-|+..    +...+..+++|+.|++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                22345556777888888777642    2334677888899999999888743    34456778899999999998


Q ss_pred             ccccccccc-----ccCCCCCEEeCCCCcCccc----Chhhhhccccccccccccccc
Q 041178          551 LRSWIPKSI-----GNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFL  599 (725)
Q Consensus       551 l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l  599 (725)
                      +...-...|     ...++|+.|.+.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            865433332     2357899999999988643    334456678999999999999

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.3e-10  Score=105.20  Aligned_cols=122  Identities=28%  Similarity=0.328  Sum_probs=37.1

Q ss_pred             CCCCCeEeccCceecCCCCcccc-CccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhh-hccccccc
Q 041178          514 LFSLNKLILSLNQLSGGMPFELG-SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSK  591 (725)
Q Consensus       514 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~  591 (725)
                      +..+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|.++.. ...+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            3345666666666652 2 1233 355666666666666653  2455666677777777766543 2233 34666666


Q ss_pred             ccccccccCccC-cccccCCCCCCEEeCCCCccccccCc----cccCCCCCCEEe
Q 041178          592 LDLSYNFLGKEM-PFQICNMKSLEKLNLCHNNLSGFIPR----CFEGMHNLSHID  641 (725)
Q Consensus       592 L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~  641 (725)
                      |++++|++...- -..+..+++|++|++.+|+++.. +.    .+..+++|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            666666664321 13455666777777777766532 21    234566666666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.6e-11  Score=119.80  Aligned_cols=210  Identities=28%  Similarity=0.279  Sum_probs=104.5

Q ss_pred             CCCCCcEEECcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178          417 NLTSLERVRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV  495 (725)
Q Consensus       417 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  495 (725)
                      ++++|+.+.+.++....... .....+++++.||++.|-+....+.                      -.....+++|+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v----------------------~~i~eqLp~Le~  176 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV----------------------LKIAEQLPSLEN  176 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH----------------------HHHHHhcccchh
Confidence            45556666666655432211 2334455666666666554432211                      111233444444


Q ss_pred             EEccCCcccccCchh-hhcCCCCCeEeccCceecCC-CCccccCccccccccccccccccccccccccCCCCCEEeCCCC
Q 041178          496 LDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGG-MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN  573 (725)
Q Consensus       496 L~Ls~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  573 (725)
                      |+++.|++....... -..++.|+.|.|+.|.++-. +......+|+|+.|+|..|............+..|++|||++|
T Consensus       177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N  256 (505)
T KOG3207|consen  177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN  256 (505)
T ss_pred             cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence            555544443221111 11344566666666665521 1222345566666666666432222233344556666777666


Q ss_pred             cCcccC-hhhhhcccccccccccccccCcc-Cccc-----ccCCCCCCEEeCCCCccccc-cCccccCCCCCCEEeCcCC
Q 041178          574 QFIQKI-PIEVEKLIHLSKLDLSYNFLGKE-MPFQ-----ICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYN  645 (725)
Q Consensus       574 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N  645 (725)
                      ++...- -...+.++.|..|+++.+.+... +|+.     ...+++|++|++++|++..- .-..+..+.+|+.|.+-.|
T Consensus       257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            654221 12345666677777777666433 2322     34567777777777777421 1122344556666666666


Q ss_pred             Ccc
Q 041178          646 ELQ  648 (725)
Q Consensus       646 ~l~  648 (725)
                      +++
T Consensus       337 ~ln  339 (505)
T KOG3207|consen  337 YLN  339 (505)
T ss_pred             ccc
Confidence            664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.2e-10  Score=110.92  Aligned_cols=133  Identities=29%  Similarity=0.309  Sum_probs=73.0

Q ss_pred             cCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCcc
Q 041178          223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLT  302 (725)
Q Consensus       223 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  302 (725)
                      +...+.|+++|+|+|.++ .+.++..-.+.++.|++++|.+...  ..+..+++|+.||+++|.++ .+-.+-..+.+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            334456666666666666 4455555566666666666666533  22556666666666666665 2333334455666


Q ss_pred             EEEccCCcCcccCcccccCCCccccccccccccccc-CCccCcCCCCCCEEEccCCcCcc
Q 041178          303 VMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNLRLLYLYNNGFYG  361 (725)
Q Consensus       303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~  361 (725)
                      .|.+++|.+...  ..+..+-+|..||+++|++... --..++++|-|+.+.+.+|.+.+
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            666666655432  2344455556666666655421 11235555555555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=7.7e-10  Score=127.09  Aligned_cols=85  Identities=28%  Similarity=0.358  Sum_probs=40.1

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCc
Q 041178          127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLA  206 (725)
Q Consensus       127 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  206 (725)
                      |..++.|++|||++|.--+.+|..++++-+||+|+++++.+. .+|..++++..|.+|++.++.....+|.....+++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            444555555555544433445555555555555555555444 4444555555555555544433333333333444444


Q ss_pred             EEEccC
Q 041178          207 NFYLNN  212 (725)
Q Consensus       207 ~L~L~~  212 (725)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=5.3e-10  Score=128.43  Aligned_cols=206  Identities=25%  Similarity=0.308  Sum_probs=133.4

Q ss_pred             cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCC--CCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCC
Q 041178          103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ--LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL  180 (725)
Q Consensus       103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  180 (725)
                      ..+....+...+-+|.+.- ++.. ..++.|++|-+..|.  +....++.|..++.|++|||++|.--+.+|..++.+-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            4445667777777766532 2222 244578888888886  44333445778999999999988766789999999999


Q ss_pred             CCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcC--cccCCccccCCCCCCceee
Q 041178          181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQL--SGSIPFSLGNLSNLGILYL  258 (725)
Q Consensus       181 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~~~~l~~l~~L~~L~L  258 (725)
                      |++|++++..+. .+|..+.++..|.+|++..+.-...+|.....+++|++|.+.....  +...-..+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999998888 7888899999999999998876566677677789999998876542  2222334455555555555


Q ss_pred             ccccccccCCccccCCCCCC----EEEccCCccccccCCCCCCCCCccEEEccCCcCccc
Q 041178          259 YSNSLSGPIPSVIGNLESLL----QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF  314 (725)
Q Consensus       259 ~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  314 (725)
                      .....  .+-..+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+...
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence            33322  1111122222222    2222222222 3445566777888888877777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.5e-10  Score=116.18  Aligned_cols=210  Identities=24%  Similarity=0.247  Sum_probs=111.4

Q ss_pred             CCCCCCcEEECCCCCCCccCc-hhccCCCCCCEEECCCCCCCCCCC--ccCcCCCCCCEEEccCCcCCCCCCccc-cCCC
Q 041178          104 SSFPHLVHLNLSFNIVFGTIP-PQVGNLSKLQHLDLGNNQLTGVIP--PEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLS  179 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~  179 (725)
                      .++..|+.+.|.+..+..... .....|++++.||||.|-+..-.|  .-...+++|+.|+++.|.+........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345566666665554422111 234456666666666665553222  122456666666666666543222111 2456


Q ss_pred             CCCEEEcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCccc-CCccccCCCCCCcee
Q 041178          180 LINELALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGS-IPFSLGNLSNLGILY  257 (725)
Q Consensus       180 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~  257 (725)
                      +|+.|.++.|.++-. +-..+..+|+|+.|+|..|.....-.....-+..|+.|||++|++-.. .-...+.++.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            666666666666521 111123556666677766642222222233455667777776665421 112345666677777


Q ss_pred             ecccccccc-CCcc-----ccCCCCCCEEEccCCccccccC--CCCCCCCCccEEEccCCcCccc
Q 041178          258 LYSNSLSGP-IPSV-----IGNLESLLQLDLSENQLSGSIP--ISLGNLSSLTVMSLFSNSLSSF  314 (725)
Q Consensus       258 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~  314 (725)
                      ++.+.+... .|+.     ...+++|++|++..|++.. .+  ..+..+++|+.|.+..|.+...
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence            776666533 2222     2456678888888887741 22  2344566777777777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=5.3e-10  Score=102.79  Aligned_cols=107  Identities=29%  Similarity=0.366  Sum_probs=27.3

Q ss_pred             CCCCCcEEECCCCCCCccCchhcc-CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccc-cCCCCCC
Q 041178          105 SFPHLVHLNLSFNIVFGTIPPQVG-NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLIN  182 (725)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~  182 (725)
                      +...+++|+|.+|.++..  +.++ .+.+|++|++++|.++.. + .+..+++|++|++++|.++. +++.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            344566666666666432  2333 456666666666666632 2 35556666666666666663 33233 2456666


Q ss_pred             EEEcCCCcCCCCC-CCCcCCCCCCcEEEccCCcCC
Q 041178          183 ELALCHNNLYGPI-PPSLGNLSNLANFYLNNNLLF  216 (725)
Q Consensus       183 ~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  216 (725)
                      +|++++|++...- -..+..+++|++|++.+|.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666666654311 122344555555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.82  E-value=5.4e-10  Score=120.40  Aligned_cols=196  Identities=30%  Similarity=0.331  Sum_probs=97.8

Q ss_pred             CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178          129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF  208 (725)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  208 (725)
                      .+..++.+++..|.+.. +-..+..+++|..|++..|.+... ...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            34455555555555552 223345556666666666665532 22245566666666666666543  234455556666


Q ss_pred             EccCCcCCccCccccCCCCCCCEEEccCCcCcccCC-ccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178          209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP-FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL  287 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  287 (725)
                      ++++|.+...  ..+..++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            6666665432  224445666666666666653322 1 35556666666666655422  2233333344445555555


Q ss_pred             ccccCCCCCCCCC--ccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178          288 SGSIPISLGNLSS--LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN  336 (725)
Q Consensus       288 ~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (725)
                      +..-+  +..+..  |+.+++++|.+... +..+..+.++..+++..|++.
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence            42211  111222  55555555555432 123444455555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=9.5e-10  Score=118.49  Aligned_cols=244  Identities=30%  Similarity=0.312  Sum_probs=166.8

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      ..+..++.+++..|.+.. +-..+..+++|++|++..|.+... ...+..+++|++|++++|.|+...  .+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence            356677777777776654 233477888999999999998844 333778899999999999988543  4667777999


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS  262 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (725)
                      |++++|.+...  ..+..+++|+.+++++|.+...-+ . ...+.+++.+++..|.+...  ..+..+..+..+++..|.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence            99999988743  456668899999999998866544 2 57788899999999987632  344555566666888888


Q ss_pred             ccccCCccccCCC--CCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccccc--
Q 041178          263 LSGPIPSVIGNLE--SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV--  338 (725)
Q Consensus       263 l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--  338 (725)
                      ++..-+  +..+.  .|+.+++++|++. ..+..+..+..+..+++.+|.+...  ..+.....+..+....+.+...  
T Consensus       220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence            764332  22233  3889999999887 3435667788899999999888764  2234445666666666665421  


Q ss_pred             -CCcc-CcCCCCCCEEEccCCcCcc
Q 041178          339 -IPSS-IGNLSNLRLLYLYNNGFYG  361 (725)
Q Consensus       339 -~~~~-l~~l~~L~~L~L~~n~l~~  361 (725)
                       .... ....+.++.+.+..|....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhccccccccccccccccccCcccc
Confidence             1111 3344555555555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.78  E-value=7.8e-09  Score=71.18  Aligned_cols=42  Identities=40%  Similarity=0.964  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeC
Q 041178           26 TKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCN   79 (725)
Q Consensus        26 ~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~   79 (725)
                      ++|++||++||+++..++.+.+.+|+   .+.         ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~---~~~---------~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN---PSS---------DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT-----TT-----------S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC---CcC---------CCCCeeeccEEeC
Confidence            68999999999999876668899996   220         1589999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=3.5e-09  Score=79.90  Aligned_cols=60  Identities=40%  Similarity=0.574  Sum_probs=39.6

Q ss_pred             ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCc
Q 041178          588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL  647 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  647 (725)
                      +|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666555556666666777777777766666666667777777777776654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=6e-09  Score=78.61  Aligned_cols=60  Identities=38%  Similarity=0.465  Sum_probs=39.5

Q ss_pred             CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCcc
Q 041178          564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL  623 (725)
Q Consensus       564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  623 (725)
                      +|++|++++|++....+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555666666666666666666666666667777777777777654

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=1.5e-09  Score=115.34  Aligned_cols=126  Identities=30%  Similarity=0.241  Sum_probs=79.1

Q ss_pred             CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      |...+.++|.+. .+..++.-++.|+.|||++|++...  +.+..|+.|++|||++|.+....--...++. |+.|+|++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            555666666666 4555666667777777777777653  3566777777777777776533222333444 77777777


Q ss_pred             cccCccCcccccCCCCCCEEeCCCCccccccC-ccccCCCCCCEEeCcCCCcc
Q 041178          597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~  648 (725)
                      |.++...  .+.++++|+.||+++|-+++.-. .-+..|.+|+.|.+.+||+.
T Consensus       242 N~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7774432  46677777777777777664321 11344556777777777764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=1.4e-08  Score=108.22  Aligned_cols=126  Identities=35%  Similarity=0.335  Sum_probs=63.9

Q ss_pred             CcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178          493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN  572 (725)
Q Consensus       493 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  572 (725)
                      |.+.+.++|++. .+...+.-++.|+.|+|++|+++...  .+..++.|+.|||++|.+.....-...++. |+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            444555555544 33344444555566666666665322  455556666666666655542111222333 66666666


Q ss_pred             CcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEeCCCCccc
Q 041178          573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      |.++..  ..+.++.+|+.||+++|-+.+.-. .-++.+..|..|.|.+|.+.
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            655322  234555666666666665544311 12344555666666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6e-08  Score=92.93  Aligned_cols=155  Identities=22%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CCCEEeCcCCccccc-cCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc--CchhhhcCCCCCeE
Q 041178          444 NLTFLDLSQNNFYGE-ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE--IPVQLAKLFSLNKL  520 (725)
Q Consensus       444 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L  520 (725)
                      .|+++|++...++.. .-.-+..|.+|+.|.+.++++...+-..+.+-..|+.|+++.+.--..  ..-.+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555422 111234556666666666666655555555556666666665542111  11234556666666


Q ss_pred             eccCceecCCCCcc-ccC-cccccccccccccc---ccccccccccCCCCCEEeCCCCcC-cccChhhhhcccccccccc
Q 041178          521 ILSLNQLSGGMPFE-LGS-LTELQYLDLSANKL---RSWIPKSIGNLLKLRYLNLSNNQF-IQKIPIEVEKLIHLSKLDL  594 (725)
Q Consensus       521 ~L~~n~l~~~~~~~-~~~-l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L  594 (725)
                      +|+-|.+....-.. +.. -++|+.|+|+++.-   ...+..-...+++|.+||||+|.- +...-.+|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            66665544322111 111 14455555555421   001111123455555555555432 2222223344444555544


Q ss_pred             cccc
Q 041178          595 SYNF  598 (725)
Q Consensus       595 s~N~  598 (725)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            4444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.17  E-value=2.4e-07  Score=78.63  Aligned_cols=82  Identities=27%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             CCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccc
Q 041178          516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLS  595 (725)
Q Consensus       516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  595 (725)
                      .|+..+|++|.+....+..-..++.++.|+|++|.++. +|+.+..++.|+.|+++.|++. ..|..+..+.++..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            34444555555552222222233445555555555544 4444555555555555555543 333334444444445544


Q ss_pred             cccc
Q 041178          596 YNFL  599 (725)
Q Consensus       596 ~N~l  599 (725)
                      +|..
T Consensus       132 ~na~  135 (177)
T KOG4579|consen  132 ENAR  135 (177)
T ss_pred             CCcc
Confidence            4444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=5.5e-07  Score=86.45  Aligned_cols=205  Identities=20%  Similarity=0.173  Sum_probs=106.7

Q ss_pred             CCCCcEEECcCccccc--cccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCc
Q 041178          418 LTSLERVRFNQNNLSG--KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQ  494 (725)
Q Consensus       418 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~  494 (725)
                      ++.++.+++.+|.++.  ++...+.++|.|++|+++.|++...+...-....+|+++.+.+..+.- .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4455555666655542  233334556666666666666654443322344556666655544331 1122334455555


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCc--cccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178          495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPF--ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN  572 (725)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  572 (725)
                      +|+++.|.              ++.+++..|-.....|.  .+...+.+..+.++-|++....       +++..+-+..
T Consensus       150 elHmS~N~--------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F-------pnv~sv~v~e  208 (418)
T KOG2982|consen  150 ELHMSDNS--------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF-------PNVNSVFVCE  208 (418)
T ss_pred             hhhhccch--------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-------ccchheeeec
Confidence            66665553              22333333333321111  1223344444444555554433       3455666666


Q ss_pred             CcCcccC-hhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCCCccccccCc------cccCCCCCCEEeCc
Q 041178          573 NQFIQKI-PIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIPR------CFEGMHNLSHIDIS  643 (725)
Q Consensus       573 n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ls  643 (725)
                      |++.... -..+..++.+..|+|+.|++..- --+++..+++|..|.+++|.+......      -++.+++++.|+=+
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            6654322 22345566677788888887332 124567788888888888887643321      14667777777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=1.2e-07  Score=80.46  Aligned_cols=57  Identities=28%  Similarity=0.414  Sum_probs=25.9

Q ss_pred             ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178          588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  646 (725)
                      .++.|++++|.+ ..+|..+..++.|+.|+++.|.+. ..|.-+..|.++..||.-+|.
T Consensus        78 t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   78 TATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             hhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            444445555544 334444444555555555555444 223333334444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=8e-08  Score=92.07  Aligned_cols=155  Identities=17%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             CCcEEEcCCCcCCCC-CCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCc-cccc-cCccccCCCCCcEE
Q 041178          396 ELVLVNMCENHLSGP-IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN-FYGE-ISFNWRNFPKLGTF  472 (725)
Q Consensus       396 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~-~~~~~~~~~~L~~L  472 (725)
                      .|+++|++...++.. +-..+..|.+|+.|.+.++++...+...+++-.+|+.++++.+. ++.. ...-+..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555421 22234556777777777777777777777777778888877653 2211 11125567777777


Q ss_pred             ECCCCcccccCCc-cccc-cCCCcEEEccCCccc---ccCchhhhcCCCCCeEeccCce-ecCCCCccccCccccccccc
Q 041178          473 IVSMNNISGSIPL-EIGE-SFKLQVLDISSNHIV---GEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDL  546 (725)
Q Consensus       473 ~l~~n~~~~~~p~-~~~~-l~~L~~L~Ls~n~l~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  546 (725)
                      +++.|.+....-. .+.+ -++|+.|++++++-.   ..+...-..|++|..|||++|. ++...-..|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7777665432211 1111 235666666665421   1111222345555555555543 22222223344455555555


Q ss_pred             cccc
Q 041178          547 SANK  550 (725)
Q Consensus       547 s~n~  550 (725)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            5553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=1.4e-06  Score=82.63  Aligned_cols=137  Identities=21%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             cCCCCCcEEECcCcccccccccc----ccCCCCCCEEeCcCCccccccCcc-------------ccCCCCCcEEECCCCc
Q 041178          416 RNLTSLERVRFNQNNLSGKVYEA----FGYHPNLTFLDLSQNNFYGEISFN-------------WRNFPKLGTFIVSMNN  478 (725)
Q Consensus       416 ~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~  478 (725)
                      .+|++|+.++++.|.+....|..    ++....|.+|.+++|.+.......             ..+-|.|++.....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34555555555555544433322    233445555555555442111111             1234555555555555


Q ss_pred             ccccC----CccccccCCCcEEEccCCccccc-----CchhhhcCCCCCeEeccCceecCC----CCccccCcccccccc
Q 041178          479 ISGSI----PLEIGESFKLQVLDISSNHIVGE-----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLD  545 (725)
Q Consensus       479 ~~~~~----p~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~  545 (725)
                      +..--    ...+..-..|+++.+.+|.|.-.     +...+..+.+|+.|||.+|-++-.    +...+..++.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            43100    00111123455555555554321     111223345555555555555421    112233344455555


Q ss_pred             ccccccc
Q 041178          546 LSANKLR  552 (725)
Q Consensus       546 Ls~n~l~  552 (725)
                      +.+|-++
T Consensus       249 lnDClls  255 (388)
T COG5238         249 LNDCLLS  255 (388)
T ss_pred             ccchhhc
Confidence            5555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.3e-06  Score=84.01  Aligned_cols=86  Identities=24%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             CCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCC
Q 041178          153 HLNQLRSLYFDVNQLHG--PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSI  229 (725)
Q Consensus       153 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L  229 (725)
                      .+++++.+||.+|.++.  .+-.-+.+++.|++|+++.|.+...|-..=....+|++|-|.+..+.- .....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34555666666665542  222234556666666666666553332111344566666666655432 122334455666


Q ss_pred             CEEEccCCc
Q 041178          230 STLDLSKNQ  238 (725)
Q Consensus       230 ~~L~Ls~n~  238 (725)
                      +.|.+|.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=1.6e-06  Score=82.19  Aligned_cols=166  Identities=20%  Similarity=0.131  Sum_probs=108.5

Q ss_pred             ccccCCCCCCEEeCcCCccccccCcc----ccCCCCCcEEECCCCcccccCCcc-------------ccccCCCcEEEcc
Q 041178          437 EAFGYHPNLTFLDLSQNNFYGEISFN----WRNFPKLGTFIVSMNNISGSIPLE-------------IGESFKLQVLDIS  499 (725)
Q Consensus       437 ~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~p~~-------------~~~l~~L~~L~Ls  499 (725)
                      .++.+||.|+.+++|+|-+....|..    ++.-..|..|.+++|.+...--.-             ...-|.|++.+..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            34568999999999999987665544    566788999999998765321111             2235678888888


Q ss_pred             CCcccccCc----hhhhcCCCCCeEeccCceecCC-----CCccccCccccccccccccccccc----cccccccCCCCC
Q 041178          500 SNHIVGEIP----VQLAKLFSLNKLILSLNQLSGG-----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKLR  566 (725)
Q Consensus       500 ~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~  566 (725)
                      .|++..-..    ..+..-..|+.+.+..|.|...     +-..+..+.+|+.|||.+|.++-.    ....+..++.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            888753222    2333446788888888877632     111235678888888888877542    234455667788


Q ss_pred             EEeCCCCcCcccChhhh----h--cccccccccccccccCcc
Q 041178          567 YLNLSNNQFIQKIPIEV----E--KLIHLSKLDLSYNFLGKE  602 (725)
Q Consensus       567 ~L~Ls~n~l~~~~p~~~----~--~l~~L~~L~Ls~N~l~~~  602 (725)
                      +|.+..|-++..-..++    .  ..++|..|-..+|...+.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            88888887765543332    1  236667777777766443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=7.7e-05  Score=77.45  Aligned_cols=134  Identities=19%  Similarity=0.255  Sum_probs=79.1

Q ss_pred             ccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCc-eecCCCCccccCcccc
Q 041178          463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN-QLSGGMPFELGSLTEL  541 (725)
Q Consensus       463 ~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L  541 (725)
                      +..+.+++.|++++|.+. .+|.   -..+|++|.+++|.-...+|..+.  ++|+.|++++| .+. .+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence            445688888999888766 3452   234688888887665455665442  47888888887 443 344      346


Q ss_pred             cccccccccccc--ccccccccCCCCCEEeCCCCcCc--ccChhhhhcc-cccccccccccccCccCcccccCCCCCCEE
Q 041178          542 QYLDLSANKLRS--WIPKSIGNLLKLRYLNLSNNQFI--QKIPIEVEKL-IHLSKLDLSYNFLGKEMPFQICNMKSLEKL  616 (725)
Q Consensus       542 ~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  616 (725)
                      +.|+++.+....  .+|      ++|+.|.+.+++..  ..+|.   .+ ++|++|++++|... ..|..+.  .+|+.|
T Consensus       115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L  182 (426)
T PRK15386        115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI  182 (426)
T ss_pred             ceEEeCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence            666666554322  122      34666666443211  11111   12 56788888877764 3343333  578888


Q ss_pred             eCCCC
Q 041178          617 NLCHN  621 (725)
Q Consensus       617 ~Ls~N  621 (725)
                      +++.|
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            88776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=3.9e-05  Score=52.83  Aligned_cols=36  Identities=42%  Similarity=0.672  Sum_probs=16.9

Q ss_pred             ccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178          588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555553 23334555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4.8e-05  Score=52.37  Aligned_cols=36  Identities=42%  Similarity=0.718  Sum_probs=15.0

Q ss_pred             CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCC
Q 041178          132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH  168 (725)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  168 (725)
                      +|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00012  Score=76.06  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=90.0

Q ss_pred             ccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccc-ccccccccccccCCCC
Q 041178          487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN-KLRSWIPKSIGNLLKL  565 (725)
Q Consensus       487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  565 (725)
                      +..+.+++.|++++|.++. +|.   -..+|++|.++++.--..+|..+  .++|++|++++| .+.. +|      .+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc------ccc
Confidence            4457889999999998763 452   23469999998865444677655  368999999998 4543 45      357


Q ss_pred             CEEeCCCCcCc--ccChhhhhcccccccccccccccC--ccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178          566 RYLNLSNNQFI--QKIPIEVEKLIHLSKLDLSYNFLG--KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID  641 (725)
Q Consensus       566 ~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  641 (725)
                      +.|+++.+...  +.+|.      +|+.|.+.+++..  ..+|..+  .++|++|++++|... ..|..+.  .+|++|+
T Consensus       115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~  183 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT  183 (426)
T ss_pred             ceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence            88888776542  33443      4566776543311  1122221  268999999999865 3454444  5899999


Q ss_pred             CcCCC
Q 041178          642 ISYNE  646 (725)
Q Consensus       642 ls~N~  646 (725)
                      ++.|.
T Consensus       184 ls~n~  188 (426)
T PRK15386        184 LHIEQ  188 (426)
T ss_pred             ecccc
Confidence            98873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.56  E-value=2.8e-05  Score=87.65  Aligned_cols=134  Identities=24%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             CCCCEEECCCCCC-CCCCCccCc-CCCCCCEEEccCCcCCCC-CCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          131 SKLQHLDLGNNQL-TGVIPPEIG-HLNQLRSLYFDVNQLHGP-IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       131 ~~L~~L~Ls~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      .+|++||+++... ...-|..++ -+|+|++|.+++-.+... .-.-..++++|..||+|+++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5667777766532 222223333 367777777766554321 122335667777777777766633  45667777777


Q ss_pred             EEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccC------CccccCCCCCCceeecccccccc
Q 041178          208 FYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSI------PFSLGNLSNLGILYLYSNSLSGP  266 (725)
Q Consensus       208 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~  266 (725)
                      |.+.+-.+.. ..-..+.++++|++||+|........      -+.-..+|+|+.||.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            7776655432 11234556777777777765433111      11223467788888877766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00019  Score=65.72  Aligned_cols=105  Identities=23%  Similarity=0.200  Sum_probs=69.5

Q ss_pred             cccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccC-cccccCCCCCCEEe
Q 041178          539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM-PFQICNMKSLEKLN  617 (725)
Q Consensus       539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~  617 (725)
                      .+...+||++|.+...  +.|..++.|.+|.+.+|.++.+-|.--.-++.|+.|.|.+|.+...- -..+..++.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4556677777776542  34666777777777777777666654455567777777777764321 12356788888998


Q ss_pred             CCCCcccccc---CccccCCCCCCEEeCcCC
Q 041178          618 LCHNNLSGFI---PRCFEGMHNLSHIDISYN  645 (725)
Q Consensus       618 Ls~N~l~~~~---p~~l~~l~~L~~L~ls~N  645 (725)
                      +-+|+.+..-   -..+..+++|+.||++.=
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8888876321   123567788888887654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.38  E-value=0.00053  Score=60.62  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=12.3

Q ss_pred             ccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccC
Q 041178          127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV  164 (725)
Q Consensus       127 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  164 (725)
                      |.++++|+.+.+.. .+.......|.++++|+.+.+..
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            44444455554442 23322333344444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.38  E-value=0.00029  Score=64.54  Aligned_cols=101  Identities=25%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             CCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCC-CCCcCCCCCCcEEEcc
Q 041178          133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI-PPSLGNLSNLANFYLN  211 (725)
Q Consensus       133 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~  211 (725)
                      ...+||++|.+...  +.|..+++|.+|.+.+|+++.+-|.--..+++|..|.|.+|++.... -+-+..|++|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            34445555544321  23444555555555555555333332223344555555555443210 0123445555555555


Q ss_pred             CCcCCccCc---cccCCCCCCCEEEcc
Q 041178          212 NNLLFDSIP---LVLGNLKSISTLDLS  235 (725)
Q Consensus       212 ~n~l~~~~p---~~l~~l~~L~~L~Ls  235 (725)
                      +|.....--   ..+..+|+|+.||+.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehh
Confidence            554432211   223344555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.31  E-value=0.0011  Score=58.59  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             cCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCC
Q 041178          199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL  278 (725)
Q Consensus       199 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  278 (725)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444444444432 222222334444444555444432 3322223344444455555433 22222233444455555


Q ss_pred             EEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcc
Q 041178          279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL  325 (725)
Q Consensus       279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  325 (725)
                      .+++..+ +.......|.++ +|+.+.+.. .+..+....|.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5555443 332333444444 555555543 3333333444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=6.7e-05  Score=84.72  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             CCCCEEEccCCcC-CCCCCcccc-CCCCCCEEEcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCE
Q 041178          155 NQLRSLYFDVNQL-HGPIPQEIG-QLSLINELALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIST  231 (725)
Q Consensus       155 ~~L~~L~L~~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  231 (725)
                      .+|++||+++... ....|..++ .+|+|+.|.+++-.+... .-....++++|..||++++.++..  ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666666442 222333333 356666666665444321 112234566666666666665433  44566666666


Q ss_pred             EEccCCcCcc-cCCccccCCCCCCceeeccccccccC------CccccCCCCCCEEEccCCcccc
Q 041178          232 LDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI------PSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       232 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      |.+.+-.+.. ..-..+.++++|+.||+|........      -+.-..+++|+.||.+++.+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            6665544442 11123455666666666654433111      0111235666666666655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.00066  Score=65.05  Aligned_cols=9  Identities=33%  Similarity=0.213  Sum_probs=3.8

Q ss_pred             CCCCCCcee
Q 041178          249 NLSNLGILY  257 (725)
Q Consensus       249 ~l~~L~~L~  257 (725)
                      -+++|.+|+
T Consensus       141 ll~~L~~LD  149 (260)
T KOG2739|consen  141 LLPSLKYLD  149 (260)
T ss_pred             Hhhhhcccc
Confidence            344444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.0014  Score=62.84  Aligned_cols=38  Identities=32%  Similarity=0.414  Sum_probs=15.4

Q ss_pred             cccccccccccc--ccccccccccccCCCCCEEeCCCCcC
Q 041178          538 LTELQYLDLSAN--KLRSWIPKSIGNLLKLRYLNLSNNQF  575 (725)
Q Consensus       538 l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l  575 (725)
                      +++|++|.++.|  ++.+..+.-...+++|+++++++|++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            344444444444  33322222223334444444444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.00067  Score=65.16  Aligned_cols=99  Identities=21%  Similarity=0.174  Sum_probs=52.5

Q ss_pred             cccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEe
Q 041178          539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLN  617 (725)
Q Consensus       539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~  617 (725)
                      .+.+.|++.+|.++.+  .....++.|+.|.||-|+++..-  .+..|+.|++|+|..|.|...-. .-+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555555543  23445556666666666654332  24556666666666666633211 2245566666666


Q ss_pred             CCCCccccccCcc-----ccCCCCCCEEe
Q 041178          618 LCHNNLSGFIPRC-----FEGMHNLSHID  641 (725)
Q Consensus       618 Ls~N~l~~~~p~~-----l~~l~~L~~L~  641 (725)
                      |..|.=.|.-+..     +.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666655544432     33455555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.65  E-value=0.00036  Score=70.88  Aligned_cols=133  Identities=20%  Similarity=0.076  Sum_probs=68.1

Q ss_pred             CCCCCeEeccCceecCCCC--ccccCcccccccccccccc-ccccccc-cccCCCCCEEeCCCCcCccc--Chhhhhccc
Q 041178          514 LFSLNKLILSLNQLSGGMP--FELGSLTELQYLDLSANKL-RSWIPKS-IGNLLKLRYLNLSNNQFIQK--IPIEVEKLI  587 (725)
Q Consensus       514 ~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l-~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~  587 (725)
                      +..|+.++.+++...+..+  .--.+..+|+.|.++.|+- +..--.. -.+++.|+.+++..+.....  +..--.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            5556666666554322111  1123456666666666652 1110011 13456677777766654211  111123456


Q ss_pred             ccccccccccccCccC-----cccccCCCCCCEEeCCCCcccc-ccCccccCCCCCCEEeCcCCC
Q 041178          588 HLSKLDLSYNFLGKEM-----PFQICNMKSLEKLNLCHNNLSG-FIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~  646 (725)
                      .|++|.|+++......     ...-..+..|+.+.|++++... ..-..+..+++|+.+++-++.
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777777777653221     1222345677778888876542 222345566777777766654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0056  Score=34.94  Aligned_cols=19  Identities=53%  Similarity=0.761  Sum_probs=10.3

Q ss_pred             CCEEeCCCCccccccCcccc
Q 041178          613 LEKLNLCHNNLSGFIPRCFE  632 (725)
Q Consensus       613 L~~L~Ls~N~l~~~~p~~l~  632 (725)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555556655555 4554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.0021  Score=61.84  Aligned_cols=100  Identities=21%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             CCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCC-CccccCccccccc
Q 041178          466 FPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM-PFELGSLTELQYL  544 (725)
Q Consensus       466 ~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  544 (725)
                      +.+.+.|++.+|.++..  .....++.|++|.||-|+|+..-|  +..|++|++|+|..|.|.... -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556677777766532  223456777777777777764433  566777777777777666321 1234566777777


Q ss_pred             ccccccccccccc-----ccccCCCCCEEe
Q 041178          545 DLSANKLRSWIPK-----SIGNLLKLRYLN  569 (725)
Q Consensus       545 ~Ls~n~l~~~~~~-----~~~~l~~L~~L~  569 (725)
                      .|..|+-.|.-+.     .+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777665543332     234455666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.34  E-value=0.00034  Score=71.06  Aligned_cols=83  Identities=17%  Similarity=0.129  Sum_probs=38.1

Q ss_pred             CCCEEEccCCccccccC--CCCCCCCCccEEEccCCcC-cccCcc-cccCCCcccccccccc-cccccCCc-cCcCCCCC
Q 041178          276 SLLQLDLSENQLSGSIP--ISLGNLSSLTVMSLFSNSL-SSFIPP-ILGNLKSLSALGLHIN-QLNGVIPS-SIGNLSNL  349 (725)
Q Consensus       276 ~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l-~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L  349 (725)
                      .|+.|.+.+++-.+.-+  .....++++++|++.++.. +...-. .-..+++|+++++..+ .++...-. --..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46666666664332211  1123566777776666652 111111 1124566666666552 22221111 12345566


Q ss_pred             CEEEccCCc
Q 041178          350 RLLYLYNNG  358 (725)
Q Consensus       350 ~~L~L~~n~  358 (725)
                      ++++++.+.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.32  E-value=0.0028  Score=70.23  Aligned_cols=123  Identities=22%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             CCCCCEEeCcCCc-cccccCcccc-CCCCCcEEECCCCc-ccccC-CccccccCCCcEEEccCCccc--ccCchhhhcCC
Q 041178          442 HPNLTFLDLSQNN-FYGEISFNWR-NFPKLGTFIVSMNN-ISGSI-PLEIGESFKLQVLDISSNHIV--GEIPVQLAKLF  515 (725)
Q Consensus       442 ~~~L~~L~ls~n~-l~~~~~~~~~-~~~~L~~L~l~~n~-~~~~~-p~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~  515 (725)
                      +++|+.++++.+. ++...-..+. .|++|+.|.+.++. ++... -.....++.|++|+++.|...  ..+.....+++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~  321 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP  321 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence            3455555555544 2221111111 25555555544444 22211 112233555666666665542  11222334455


Q ss_pred             CCCeEeccCceecCCCCccccCccccccccccccccc---cccccccccCCCCCEEeCCCCc
Q 041178          516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR---SWIPKSIGNLLKLRYLNLSNNQ  574 (725)
Q Consensus       516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~  574 (725)
                      +++.|.+....          .+..++.+.++...-.   .........++.++.+.+..+.
T Consensus       322 ~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  322 NLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             chhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            55554332211          1344444444433221   1122234556666666666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.04  E-value=0.0029  Score=70.15  Aligned_cols=172  Identities=20%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CCCCcEEECcCcccccc--ccccccCCCCCCEEeCcCC-ccccccC----ccccCCCCCcEEECCCCc-ccccCCcccc-
Q 041178          418 LTSLERVRFNQNNLSGK--VYEAFGYHPNLTFLDLSQN-NFYGEIS----FNWRNFPKLGTFIVSMNN-ISGSIPLEIG-  488 (725)
Q Consensus       418 l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n-~l~~~~~----~~~~~~~~L~~L~l~~n~-~~~~~p~~~~-  488 (725)
                      ++.|+.+.+..+.-...  .......++.|+.|+++++ ......+    .....+++|+.++++.+. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            34455555444422211  2233445666777777652 1111111    123345667777776665 3322212222 


Q ss_pred             ccCCCcEEEccCCc-ccccCc-hhhhcCCCCCeEeccCceecCC--CCccccCccccccccccccccccccccccccCCC
Q 041178          489 ESFKLQVLDISSNH-IVGEIP-VQLAKLFSLNKLILSLNQLSGG--MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK  564 (725)
Q Consensus       489 ~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  564 (725)
                      .+++|+.|.+.+|. +++..- .....+++|++|+++++.....  +.....++++|+.|.+....          .+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence            25667776666555 333222 2234466666666665544311  11112234444443332211          1233


Q ss_pred             CCEEeCCCCcCc---ccChhhhhccccccccccccccc
Q 041178          565 LRYLNLSNNQFI---QKIPIEVEKLIHLSKLDLSYNFL  599 (725)
Q Consensus       565 L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l  599 (725)
                      ++.+.+......   .........++.++.+.+.++..
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence            333333332221   12222345667777777777663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.65  E-value=0.01  Score=33.81  Aligned_cols=19  Identities=42%  Similarity=0.447  Sum_probs=9.2

Q ss_pred             cccccccccccCccCccccc
Q 041178          589 LSKLDLSYNFLGKEMPFQIC  608 (725)
Q Consensus       589 L~~L~Ls~N~l~~~~p~~~~  608 (725)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.41  E-value=0.0011  Score=71.84  Aligned_cols=84  Identities=29%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             CCCEEeCcCCccccccCc----cccCCCCCcEEECCCCcccccCCcc----cccc-CCCcEEEccCCccccc----Cchh
Q 041178          444 NLTFLDLSQNNFYGEISF----NWRNFPKLGTFIVSMNNISGSIPLE----IGES-FKLQVLDISSNHIVGE----IPVQ  510 (725)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~p~~----~~~l-~~L~~L~Ls~n~l~~~----~~~~  510 (725)
                      .+..+.+.+|.+......    .+...+.|+.|++++|.+.+.--..    +... ..+++|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            366777777777654222    2445666666777766665321111    1111 2344555555555432    2233


Q ss_pred             hhcCCCCCeEeccCcee
Q 041178          511 LAKLFSLNKLILSLNQL  527 (725)
Q Consensus       511 ~~~~~~L~~L~L~~n~l  527 (725)
                      +.....++.++++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            33445555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.89  E-value=0.0017  Score=70.35  Aligned_cols=109  Identities=27%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             CCcEEECcCcccccccc----ccccCCCCCCEEeCcCCccccccCc----cccCC-CCCcEEECCCCccccc----CCcc
Q 041178          420 SLERVRFNQNNLSGKVY----EAFGYHPNLTFLDLSQNNFYGEISF----NWRNF-PKLGTFIVSMNNISGS----IPLE  486 (725)
Q Consensus       420 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~l~~n~~~~~----~p~~  486 (725)
                      .+..+.+.+|.+.....    ..+...+.|+.|++++|.+.+....    .+... ..+++|++..|.++..    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            36778888888765433    4456778899999999988743221    12222 5567777777777653    3445


Q ss_pred             ccccCCCcEEEccCCcccc----cCchhhh----cCCCCCeEeccCceec
Q 041178          487 IGESFKLQVLDISSNHIVG----EIPVQLA----KLFSLNKLILSLNQLS  528 (725)
Q Consensus       487 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~----~~~~L~~L~L~~n~l~  528 (725)
                      +.....++.++++.|.+..    .++..+.    ...++++|++.+|.++
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            5567788888998888731    1222222    2445555666655554

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=91.11  E-value=0.28  Score=31.62  Aligned_cols=11  Identities=9%  Similarity=0.132  Sum_probs=4.3

Q ss_pred             HHhhcccccCC
Q 041178          715 LFQRRNDSTKQ  725 (725)
Q Consensus       715 ~~~~~~~~~k~  725 (725)
                      +++||.+++|+
T Consensus        28 Ccykk~~~~k~   38 (38)
T PF02439_consen   28 CCYKKHRRQKM   38 (38)
T ss_pred             HHHcccccccC
Confidence            33333333353

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.27  E-value=0.02  Score=53.91  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             cccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCC
Q 041178          534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL  613 (725)
Q Consensus       534 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  613 (725)
                      .+......+.||++.|++.. .-..|+-++.+..||++.|++ ...|..++++..++.+++..|.. ...|.+++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence            34455666777777777654 334566666777777777776 36777777777777777777777 5567777777888


Q ss_pred             CEEeCCCCccc
Q 041178          614 EKLNLCHNNLS  624 (725)
Q Consensus       614 ~~L~Ls~N~l~  624 (725)
                      +++++.+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88887777754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.25  E-value=0.026  Score=53.18  Aligned_cols=89  Identities=21%  Similarity=0.255  Sum_probs=75.6

Q ss_pred             cccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCC
Q 041178          557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHN  636 (725)
Q Consensus       557 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  636 (725)
                      ..+......+.||++.|++. ..-..|+-++.|..|+++.|.+ ...|..++....+..+++..|..+ ..|.++...+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34555677889999999874 3444677788999999999999 678889999999999999999998 77999999999


Q ss_pred             CCEEeCcCCCcc
Q 041178          637 LSHIDISYNELQ  648 (725)
Q Consensus       637 L~~L~ls~N~l~  648 (725)
                      +++++.-.|++.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999874

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.02  E-value=0.23  Score=26.15  Aligned_cols=13  Identities=38%  Similarity=0.680  Sum_probs=4.8

Q ss_pred             CCCEEeCCCCccc
Q 041178          612 SLEKLNLCHNNLS  624 (725)
Q Consensus       612 ~L~~L~Ls~N~l~  624 (725)
                      +|+.|++++|++.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.58  E-value=0.44  Score=28.27  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=12.4

Q ss_pred             CCCCCEEeCCCCccccccCc
Q 041178          610 MKSLEKLNLCHNNLSGFIPR  629 (725)
Q Consensus       610 l~~L~~L~Ls~N~l~~~~p~  629 (725)
                      +++|++|+|++|++....+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777644333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.58  E-value=0.44  Score=28.27  Aligned_cols=20  Identities=35%  Similarity=0.622  Sum_probs=12.4

Q ss_pred             CCCCCEEeCCCCccccccCc
Q 041178          610 MKSLEKLNLCHNNLSGFIPR  629 (725)
Q Consensus       610 l~~L~~L~Ls~N~l~~~~p~  629 (725)
                      +++|++|+|++|++....+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777644333

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=85.96  E-value=0.6  Score=39.91  Aligned_cols=27  Identities=11%  Similarity=-0.016  Sum_probs=9.9

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhhccc
Q 041178          695 VMFSSLVMIILLICLIGFKVLFQRRND  721 (725)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (725)
                      ++|++.+++.++.+++.+.|+.+|+||
T Consensus        67 ~~Ii~gv~aGvIg~Illi~y~irR~~K   93 (122)
T PF01102_consen   67 IGIIFGVMAGVIGIILLISYCIRRLRK   93 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333333333333344444333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF15102 TMEM154: TMEM154 protein family

Probab=85.96  E-value=0.59  Score=40.82  Aligned_cols=7  Identities=0%  Similarity=0.425  Sum_probs=2.9

Q ss_pred             eEEeehH
Q 041178          692 WVVVMFS  698 (725)
Q Consensus       692 ~~~~~~~  698 (725)
                      .++|+|.
T Consensus        58 iLmIlIP   64 (146)
T PF15102_consen   58 ILMILIP   64 (146)
T ss_pred             EEEEeHH
Confidence            3344444

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=85.27  E-value=0.49  Score=31.17  Aligned_cols=8  Identities=38%  Similarity=0.762  Sum_probs=3.3

Q ss_pred             HHHHHhhc
Q 041178          712 FKVLFQRR  719 (725)
Q Consensus       712 ~~~~~~~~  719 (725)
                      +.++|+||
T Consensus        31 ~l~~~~rR   38 (40)
T PF08693_consen   31 FLFFWYRR   38 (40)
T ss_pred             HhheEEec
Confidence            33434444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=82.56  E-value=0.71  Score=46.44  Aligned_cols=8  Identities=38%  Similarity=0.609  Sum_probs=2.9

Q ss_pred             HHHHHhhc
Q 041178          712 FKVLFQRR  719 (725)
Q Consensus       712 ~~~~~~~~  719 (725)
                      |.++++||
T Consensus       276 YLILRYRR  283 (299)
T PF02009_consen  276 YLILRYRR  283 (299)
T ss_pred             HHHHHHHH
Confidence            33333333

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.38  E-value=0.5  Score=27.41  Aligned_cols=15  Identities=47%  Similarity=0.556  Sum_probs=6.3

Q ss_pred             CCCCEEeCCCCcCcc
Q 041178          563 LKLRYLNLSNNQFIQ  577 (725)
Q Consensus       563 ~~L~~L~Ls~n~l~~  577 (725)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344555555555443

...

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=81.54  E-value=1.9  Score=33.61  Aligned_cols=18  Identities=22%  Similarity=0.340  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHhhccccc
Q 041178          706 LICLIGFKVLFQRRNDST  723 (725)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~  723 (725)
                      +++++.|++++++|||.|
T Consensus        45 il~VilwfvCC~kRkrsR   62 (94)
T PF05393_consen   45 ILLVILWFVCCKKRKRSR   62 (94)
T ss_pred             HHHHHHHHHHHHHhhhcc
Confidence            344444444554444443

; GO: 0016021 integral to membrane

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.45  E-value=1.5  Score=25.88  Aligned_cols=14  Identities=57%  Similarity=0.653  Sum_probs=7.2

Q ss_pred             CCCCEEeCCCCcCc
Q 041178          563 LKLRYLNLSNNQFI  576 (725)
Q Consensus       563 ~~L~~L~Ls~n~l~  576 (725)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.45  E-value=1.5  Score=25.88  Aligned_cols=14  Identities=57%  Similarity=0.653  Sum_probs=7.2

Q ss_pred             CCCCEEeCCCCcCc
Q 041178          563 LKLRYLNLSNNQFI  576 (725)
Q Consensus       563 ~~L~~L~Ls~n~l~  576 (725)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=80.11  E-value=0.64  Score=40.89  Aligned_cols=24  Identities=17%  Similarity=0.090  Sum_probs=10.0

Q ss_pred             ceEEeehHHHHHHHHHHHHHHHHH
Q 041178          691 KWVVVMFSSLVMIILLICLIGFKV  714 (725)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~  714 (725)
                      +.+++.+++.+.+.+++++++++|
T Consensus        48 knIVIGvVVGVGg~ill~il~lvf   71 (154)
T PF04478_consen   48 KNIVIGVVVGVGGPILLGILALVF   71 (154)
T ss_pred             ccEEEEEEecccHHHHHHHHHhhe
Confidence            344455544443333333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	725
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-45
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-44
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-14
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-10
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-09
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		7e-08
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-08
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		8e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		8e-08
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		7e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		8e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		3e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		3e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		7e-06
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		8e-06
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		9e-06
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-05
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		3e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		4e-05
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-05
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		6e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		7e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-04
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		9e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-04
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		4e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		4e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		4e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		5e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		9e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  178 bits (452), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 260/591 (43%), Gaps = 84/591 (14%)
Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQ------ 173
           F T  P +G+ S LQHLD+  N+L+G     I    +L+ L    NQ  GPIP       
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 174 ------------EI-----GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF 216
                       EI     G    +  L L  N+ YG +PP  G                
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 217 DSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLS-NLGILYLYSNSLSGPI-PSVIGN 273
             +P+  L  ++ +  LDLS N+ SG +P SL NLS +L  L L SN+ SGPI P++  N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 274 LESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
            ++ LQ L L  N  +G IP +L N S L  + L  N LS  IP  LG+L  L  L L +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 333 NQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
           N L G IP                        +E+ Y+K++  L L  N L G IP  + 
Sbjct: 452 NMLEGEIP------------------------QELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
           N T L  +++  N L+G IPK +  L +L  ++ + N+ SG +    G   +L +LDL+ 
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN--HIVGEIPVQ 510
           N F G I      F + G   ++ N I+G   + I      +    + N     G    Q
Sbjct: 548 NLFNGTIPAAM--FKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
           L +L + N   ++     G       +   + +LD+S N L  +IPK IG++  L  LNL
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
            +N     IP EV  L  L+ LDLS N L   +P  +  +  L +++L +NNLSG IP  
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 631 --FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCK 679
             FE                       TF  A+   N GLCG    LP C 
Sbjct: 724 GQFE-----------------------TFPPAKFLNNPGLCG--YPLPRCD 749

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 36/471 (7%)
Query: 228 SISTLDLSKNQLSGSIPF--SLGNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSE 284
           S+++LDLS+N LSG +    SLG+ S L  L + SN+L  P     G  L SL  LDLS 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 285 NQLSG-------------------------SIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319
           N +SG                         S  + +    +L  + + SN+ S+ IP  L
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FL 219
Query: 320 GNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELC 379
           G+  +L  L +  N+L+G    +I                   +P     LKS+  L L 
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 380 TNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV-YE 437
            N+  G IP  + G    L  +++  NH  G +P    + + LE +  + NN SG++  +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNF-PKLGTFIVSMNNISGSIPLEIGESFK--LQ 494
                  L  LDLS N F GE+  +  N    L T  +S NN SG I   + ++ K  LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554
            L + +N   G+IP  L+    L  L LS N LSG +P  LGSL++L+ L L  N L   
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
           IP+ +  +  L  L L  N    +IP  +    +L+ + LS N L  E+P  I  +++L 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGN 665
            L L +N+ SG IP       +L  +D++ N   G IP +   +  ++  N
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 185/603 (30%), Positives = 264/603 (43%), Gaps = 84/603 (13%)
Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQ------ 173
           F T  P +G+ S LQHLD+  N+L+G     I    +L+ L    NQ  GPIP       
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 268
Query: 174 ------------EI-----GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF 216
                       EI     G    +  L L  N+ YG +PP  G                
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 217 DSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLS-NLGILYLYSNSLSGPI-PSVIGN 273
             +P+  L  ++ +  LDLS N+ SG +P SL NLS +L  L L SN+ SGPI P++  N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 274 LESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
            ++ LQ L L  N  +G IP +L N S L  + L  N LS  IP  LG+L  L  L L +
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 333 NQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
           N L G IP                        +E+ Y+K++  L L  N L G IP  + 
Sbjct: 449 NMLEGEIP------------------------QELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
           N T L  +++  N L+G IPK +  L +L  ++ + N+ SG +    G   +L +LDL+ 
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN--HIVGEIPVQ 510
           N F G I      F + G   ++ N I+G   + I      +    + N     G    Q
Sbjct: 545 NLFNGTIPAAM--FKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
           L +L + N   ++     G       +   + +LD+S N L  +IPK IG++  L  LNL
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
            +N     IP EV  L  L+ LDLS N L   +P  +  +  L +++L +NNLSG IP  
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 631 --FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQAS 688
             FE                       TF  A+   N GLCG    LP C    +   A 
Sbjct: 721 GQFE-----------------------TFPPAKFLNNPGLCG--YPLPRCDPSNADGYAH 755
Query: 689 RKK 691
            ++
Sbjct: 756 HQR 758

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 36/471 (7%)
Query: 228 SISTLDLSKNQLSGSIPF--SLGNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSE 284
           S+++LDLS+N LSG +    SLG+ S L  L + SN+L  P     G  L SL  LDLS 
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 285 NQLSG-------------------------SIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319
           N +SG                         S  + +    +L  + + SN+ S+ IP  L
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FL 216
Query: 320 GNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELC 379
           G+  +L  L +  N+L+G    +I                   +P     LKS+  L L 
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 380 TNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV-YE 437
            N+  G IP  + G    L  +++  NH  G +P    + + LE +  + NN SG++  +
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNF-PKLGTFIVSMNNISGSIPLEIGESFK--LQ 494
                  L  LDLS N F GE+  +  N    L T  +S NN SG I   + ++ K  LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554
            L + +N   G+IP  L+    L  L LS N LSG +P  LGSL++L+ L L  N L   
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
           IP+ +  +  L  L L  N    +IP  +    +L+ + LS N L  E+P  I  +++L 
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGN 665
            L L +N+ SG IP       +L  +D++ N   G IP +   +  ++  N
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 37/295 (12%)
Query: 55  ANATNVSSYSKTKINPC--AWVGISCN---QAERIISINLSSMGLNGTLQEFAFSSFPHL 109
            N T +SS+  T  + C   W+G+ C+   Q  R+ +++LS  GLN        SS  +L
Sbjct: 19  GNPTTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLS--GLNLPKPYPIPSSLANL 75
Query: 110 VHLNLSF----NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165
            +LN  +    N + G IPP +  L++L +L + +  ++G IP  +  +  L +L F  N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 166 QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGN 225
            L G +P  I  L  +  +    N + G IP S G                         
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---------------------- 173
Query: 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
            K  +++ +S+N+L+G IP +  NL NL  + L  N L G    + G+ ++  ++ L++N
Sbjct: 174 -KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
            L+  +   +G   +L  + L +N +   +P  L  LK L +L +  N L G IP
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 119/294 (40%), Gaps = 51/294 (17%)
Query: 387 IPHSIGNLTELVLVNMCE-NHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
           IP S+ NL  L  + +   N+L GPIP ++  LT L  +     N+SG + +       L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL-QVLDISSNHIV 504
             LD S N   G +  +  + P L       N ISG+IP   G   KL   + IS N + 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 505 GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
           G+IP   A L +L  + LS N L G      GS    Q + L+ N L             
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------FD 236
Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           L  + LS N               L+ LDL  N +   +P  +  +K L  LN+  NNL 
Sbjct: 237 LGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 625 GFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSC 678
           G IP+      NL   D+S                     NK LCG+   LP+C
Sbjct: 282 GEIPQ----GGNLQRFDVS-----------------AYANNKCLCGS--PLPAC 312

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 165/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L+NL  +   +N L+   P  + NL  L+ + ++ NQ++   P  L NL++LT ++LF+N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
            ++   P  L NL +L+ L L  N ++ +                            +  
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L S+ +L   +N++    P  + NLT L  +++  N +S      L  LT+LE +    N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            +S       G   NL            E+S N      +GT + S+ N++         
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
                 LD+++N I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L    P  I NL  L YL L  N      P  V  L  L +L  S N +       + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVS--SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           + ++  L+  HN +S   P     + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 166/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L+NL  +   +N L+   P  + NL  L+ + ++ NQ++   P  L NL++LT ++LF+N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
            ++   P  L NL +L+ L L  N ++ +                            +  
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L S+ +L   +N++    P  + NLT L  +++  N +S      L  LT+LE +    N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            +S       G   NL            E+S N      +GT + S+ N++         
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
                 LD+++N I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L    P  I NL  L YL L  N      P  V  L  L +L   YN    ++   + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           + ++  L+  HN +S   P     + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 166/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L+NL  +   +N L+   P  + NL  L+ + ++ NQ++   P  L NL++LT ++LF+N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
            ++   P  L NL +L+ L L  N ++ +                            +  
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L S+ +L   +N++    P  + NLT L  +++  N +S      L  LT+LE +    N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            +S       G   NL            E+S N      +GT + S+ N++         
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
                 LD+++N I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L    P  I NL  L YL L  N      P  V  L  L +L   YN    ++   + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           + ++  L+  HN +S   P     + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 164/391 (41%), Gaps = 80/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L+NL  +   +N L+   P  + NL  L+ + ++ NQ++   P  L NL++LT ++LF+N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
            ++   P  L NL +L+ L L  N ++ +                            +  
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L S+ +L    N++    P  + NLT L  +++  N +S      L  LT+LE +    N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 204
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            +S       G   NL            E+S N      +GT + S+ N++         
Sbjct: 205 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 242
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
                 LD+++N I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N
Sbjct: 243 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L    P  I NL  L YL L  N      P  V  L  L +L  S N +       + N
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVS--SLAN 346
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           + ++  L+  HN +S   P     + NL+ I
Sbjct: 347 LTNINWLSAGHNQISDLTP-----LANLTRI 372

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 165/391 (42%), Gaps = 80/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L+NL  +   +N L+   P  + NL  L+ + ++ NQ++   P  L NL++LT ++LF+N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
            ++   P  L NL +L+ L L  N ++ +                            +  
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           L S+ +L    N++    P  + NLT L  +++  N +S      L  LT+LE +    N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 204
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
            +S       G   NL            E+S N      +GT + S+ N++         
Sbjct: 205 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 242
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
                 LD+++N I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N
Sbjct: 243 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
           +L    P  I NL  L YL L  N      P  V  L  L +L   YN    ++   + N
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 346
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           + ++  L+  HN +S   P     + NL+ I
Sbjct: 347 LTNINWLSAGHNQISDLTP-----LANLTRI 372

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           I+ L+L+ NQL      +    S L  L +  N++S   P +   L  L  L+L  N+LS
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
                +    ++LT + L SNS+           K+L  L L  N L+     +      
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
                           EE+      S+ +LEL +N+++   P   H+IG L  L L N+ 
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 211
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
               L+  +   L N TS+  +  + + LS      F G    NLT LDLS NN    G 
Sbjct: 212 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
            SF W   P+L  F +  NNI    S S+        L +  SF  Q + ++S   + + 
Sbjct: 271 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 328
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
             Q  K   L  L +  N + G        L  L+YL LS +   LR+   ++  +L   
Sbjct: 329 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 386
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
            L  LNL+ N+ I KI  +    L HL  LDL  N +G+E+  Q
Sbjct: 387 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 429

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 175/434 (40%), Gaps = 35/434 (8%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           I+ L+L+ NQL    P +    S L IL    NS+S   P +   L  L  L+L  N+LS
Sbjct: 27  ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
                +    ++LT + L SNS+         N K+L  L L  N L+     +      
Sbjct: 87  QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELELCTNRLRGGIP---HSIGNLTELVLVNMC 403
                           EE+ +L   S+ +L+L +N L+   P    +IG L  L+L N  
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 404 EN-HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDLSQNNFY--GE 458
            N HL+  +   L N TS++ +    N L       F      NLT LDLS NN +  G 
Sbjct: 207 LNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLN 518
            SF++   P L    +  NNI    P        L+ L +                 +  
Sbjct: 266 GSFSY--LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR---------------AFT 308
Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
           K  +SL        F    L  L+YL++  N + S    +   L+ L+YL+LS   F   
Sbjct: 309 KQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT-FTSL 367
Query: 579 IPIEVEKLIHLSK-----LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RCFE 632
             +  E  + L+      L+L+ N + K        +  L  L+L  N +   +  + + 
Sbjct: 368 QTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR 427
Query: 633 GMHNLSHIDISYNE 646
           G+ N+  I +SYN+
Sbjct: 428 GLRNIFEIYLSYNK 441

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 11/288 (3%)
Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
           +P+++    +I  L L  N+LR   P +    ++L +++   N +S   P+  + L  L+
Sbjct: 19  IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGS 482
            +    N LS    + F +  NLT LDL  N+ +   S  ++N   L    +S N +S S
Sbjct: 77  VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS-S 135
Query: 483 IPLEIG-ESFKLQVLDISSNHIVGEIPVQLAKL--FSLNKLILSLNQLSGGMPFELGSLT 539
             L  G +   LQ L ++ N I+     +L  L   SL KL LS N L    P    ++ 
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 540 ELQYLDLSANKLRSWIPKSIGNLL---KLRYLNLSNNQFIQKIPIEVE--KLIHLSKLDL 594
           +L  L L+  +L   + + +   L    ++ L+L+NNQ +          K  +L++LDL
Sbjct: 196 KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
           SYN L          + SL  L+L +NN+    PR F G+ NL ++ +
Sbjct: 256 SYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           I+ L+L+ NQL      +    S L  L +  N++S   P +   L  L  L+L  N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
                +    ++LT + L SNS+           K+L  L L  N L+     +      
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
                           EE+      S+ +LEL +N+++   P   H+IG L  L L N+ 
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
               L+  +   L N TS+  +  + + LS      F G    NLT LDLS NN    G 
Sbjct: 207 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
            SF W   P+L  F +  NNI    S S+        L +  SF  Q + ++S   + + 
Sbjct: 266 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
             Q  K   L  L +  N + G        L  L+YL LS +   LR+   ++  +L   
Sbjct: 324 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
            L  LNL+ N+ I KI  +    L HL  LDL  N +G+E+  Q
Sbjct: 382 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           I+ L+L+ NQL      +    S L  L +  N++S   P +   L  L  L+L  N+LS
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
                +    ++LT + L SNS+           K+L  L L  N L+     +      
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
                           EE+      S+ +LEL +N+++   P   H+IG L  L L N+ 
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 216
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
               L+  +   L N TS+  +  + + LS      F G    NLT LDLS NN    G 
Sbjct: 217 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
            SF W   P+L  F +  NNI    S S+        L +  SF  Q + ++S   + + 
Sbjct: 276 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 333
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
             Q  K   L  L +  N + G        L  L+YL LS +   LR+   ++  +L   
Sbjct: 334 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 391
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
            L  LNL+ N+ I KI  +    L HL  LDL  N +G+E+  Q
Sbjct: 392 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 434

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
           L  N++S     S     NL IL+L+SN L+    +    L  L QLDLS+N QL    P
Sbjct: 38  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
            +   L  L  + L    L    P +   L +L  L L  N L   +P            
Sbjct: 98  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 156
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
                     VPE     L S+  L L  NR+    PH+  +L  L+ + +  N+LS   
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 412 PKSLRNLTSLERVRFNQN 429
            ++L  L +L+ +R N N
Sbjct: 217 TEALAPLRALQYLRLNDN 234

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
           L  N++S     S     NL IL+L+SN L+    +    L  L QLDLS+N QL    P
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
            +   L  L  + L    L    P +   L +L  L L  N L   +P            
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
                     VPE     L S+  L L  NR+    PH+  +L  L+ + +  N+LS   
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 412 PKSLRNLTSLERVRFNQN 429
            ++L  L +L+ +R N N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 78/378 (20%)
Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
           L +L Q++ S NQL+   P  L NL+ L  + + +N ++   P  L NL +L+ L L  N
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 334 QLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
           Q+  + P                          +  L ++  LEL +N +      ++  
Sbjct: 122 QITDIDP--------------------------LKNLTNLNRLELSSNTISD--ISALSG 153
Query: 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
           LT L  ++   N ++   P  L NLT+LER+  + N +S           NL  L  + N
Sbjct: 154 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 208
Query: 454 NF-----------YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
                          E+S N      +GT + S+ N++               LD+++N 
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTD--------------LDLANNQ 253
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
           I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N+L    P  I NL
Sbjct: 254 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 307
Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
             L YL L  N      P  V  L  L +L  + N +       + N+ ++  L+  HN 
Sbjct: 308 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQ 363
Query: 623 LSGFIPRCFEGMHNLSHI 640
           +S   P     + NL+ I
Sbjct: 364 ISDLTP-----LANLTRI 376

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
           L  ++YL L  NKL      ++  L  L YL L+ NQ +Q +P  V +KL +L +L L  
Sbjct: 62  LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVE 118
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----GPI 651
           N L + +P  + + + +L  LNL HN L       F+ + NL+ +D+SYN+LQ    G  
Sbjct: 119 NQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 652 PNSTTFKDARMEGNK 666
              T  KD R+  N+
Sbjct: 178 DKLTQLKDLRLYQNQ 192

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 156/378 (41%), Gaps = 78/378 (20%)
Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
           L +L Q++ S NQL+   P  L NL+ L  + + +N ++   P  L NL +L+ L L  N
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 334 QLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
           Q+  + P                          +  L ++  LEL +N +      ++  
Sbjct: 123 QITDIDP--------------------------LKNLTNLNRLELSSNTISD--ISALSG 154
Query: 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
           LT L  ++   N ++   P  L NLT+LER+  + N +S           NL  L  + N
Sbjct: 155 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209
Query: 454 NF-----------YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
                          E+S N      +GT + S+ N++               LD+++N 
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTD--------------LDLANNQ 254
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
           I    P  L+ L  L +L L  NQ+S   P  L  LT L  L+L+ N+L    P  I NL
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308
Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
             L YL L  N      P  V  L  L +L   YN    ++   + N+ ++  L+  HN 
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGHNQ 364
Query: 623 LSGFIPRCFEGMHNLSHI 640
           +S   P     + NL+ I
Sbjct: 365 ISDLTP-----LANLTRI 377

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
           +E+  +   Q +D   + +  +IP       S   + LS N L     +   + +ELQ+L
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWL 61
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
           DLS  ++ +   K+   L  L  L L+ N      P     L  L  L      L     
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
           F I  + +L+KLN+ HN + S  +P  F  + NL H+D+SYN +Q    N   F
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            + + LDL +NKL S   K+   L KLR L L++N+ +Q +P  + ++L +L  L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95
Query: 598 FLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----GPIP 652
            L + +P  + + + +L +L L  N L    PR F+ +  L+++ + YNELQ    G   
Sbjct: 96  KL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 653 NSTTFKDARMEGNK 666
             T+ K+ R+  N+
Sbjct: 155 KLTSLKELRLYNNQ 168

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
           GS  +E+  +   Q ++++   I   +P      FS   L LS N L     +   S  E
Sbjct: 1   GSPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSWNPLRHLGSYSFFSFPE 54
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFL 599
           LQ LDLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      L
Sbjct: 55  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 113
Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
                F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
           +E+  +   Q +D   + +  +IP       S   + LS N L     +   + +ELQ+L
Sbjct: 3   IEVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWL 56
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
           DLS  ++ +   K+   L  L  L L+ N      P     L  L  L      L     
Sbjct: 57  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 116
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
           F I  + +L+KLN+ HN + S  +P  F  + NL H+D+SYN +Q    N   F
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 481 GSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
           GS P +E+  +   Q ++++   I   +P      FS   L LS N L     +   S  
Sbjct: 1   GSEPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSWNPLRHLGSYSFFSFP 54
Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNF 598
           ELQ LDLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      
Sbjct: 55  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 113
Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
           L     F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 481 GSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
           GS P +E+  +   Q ++++   I   +P      FS   L LS N L     +   S  
Sbjct: 1   GSEPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFP 54
Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNF 598
           ELQ LDLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      
Sbjct: 55  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVALETN 113
Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
           L     F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
           GS  +E+  +   Q  +++   I   +P      FS   L LS N L     +   S  E
Sbjct: 1   GSPCVEVVPNITYQCEELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPE 54
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFL 599
           LQ LDLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      L
Sbjct: 55  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 113
Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
                F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
           +E+  +   Q ++++   I   +P      FS   L LS N L     +   S  ELQ L
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFLGKEM 603
           DLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      L    
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 604 PFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
            F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
           L  N++S     S  +  NL IL+L+SN+L+G   +    L  L QLDLS+N QL    P
Sbjct: 38  LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
            +   L  L  + L    L    P +   L +L  L L  N L  +  ++          
Sbjct: 98  TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF--------- 148
Query: 353 XXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP 412
                        ++G L  +F   L  NR+     H+   L  L  + + +NH++   P
Sbjct: 149 ------------RDLGNLTHLF---LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
            + R+L  L  +    NNLS    E      +L +L L+ N
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 45/312 (14%)
Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           +CT R    +P SI   T  +  N+ EN +      + ++L  LE ++ ++N +      
Sbjct: 20  ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVL 496
           AF   P+L  L+L  N                            ++P +  E   KL+ L
Sbjct: 78  AFNGLPSLNTLELFDNRL-------------------------TTVPTQAFEYLSKLREL 112
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
            + +N I         ++ SL +L L  L +L          L  L+YL+L    L+  I
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-I 171
Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
           P ++  L++L  L LS N+     P   + L  L KL L +  +         ++KSLE+
Sbjct: 172 P-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNE-------------LQGPIPNSTTFKDARM 662
           LNL HNNL       F  +H L  + +++N              L+  +P++TT   AR 
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC-ARC 289
Query: 663 EGNKGLCGNIKG 674
               GL G   G
Sbjct: 290 HAPAGLKGRYIG 301

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 29/273 (10%)
Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
           F   +C  +    +P  I   T   L+N+ EN +      S ++L  LE ++ ++N++  
Sbjct: 45  FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 434 KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL 493
               AF    NL  L+L  N             P  G F+                  KL
Sbjct: 103 IEIGAFNGLANLNTLELFDNRL--------TTIPN-GAFVYLS---------------KL 138
Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLR 552
           + L + +N I         ++ SL +L L  L +LS         L+ L+YL+L+   LR
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKS 612
             IP ++  L+KL  L+LS N      P   + L+HL KL +  + +         N++S
Sbjct: 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 613 LEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           L ++NL HNNL+      F  +H+L  I + +N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            +  L+SI TLDL+  Q++   P  L  LSNL +LYL  N ++   P  +  L +L  L 
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 163
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
           +  NQ++   P  L NLS LT +    N +S   P  L +L +L  + L  NQ++ V P
Sbjct: 164 IGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
           +E+  +   Q ++++   I   +P      FS   L LS N L     +   S  ELQ L
Sbjct: 4   VEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFLGKEM 603
           DLS  ++++    +  +L  L  L L+ N  IQ + +     L  L KL      L    
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 604 PFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
            F I ++K+L++LN+ HN +  F +P  F  + NL H+D+S N++Q 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 45/312 (14%)
Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           +CT R    +P SI   T  +  N+ EN +      + ++L  LE ++ ++N +      
Sbjct: 20  ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVL 496
           AF   P+L  L+L  N                            ++P +  E   KL+ L
Sbjct: 78  AFNGLPSLNTLELFDNRL-------------------------TTVPTQAFEYLSKLREL 112
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
            + +N I         ++ SL +L L  L +L          L  L+YL+L    L+  I
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-I 171
Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
           P ++  L++L  L LS N+     P   + L  L KL L +  +         ++KSLE+
Sbjct: 172 P-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNE-------------LQGPIPNSTTFKDARM 662
           LNL HNNL       F  +H L  + +++N              L+  +P++TT   AR 
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC-ARC 289
Query: 663 EGNKGLCGNIKG 674
               GL G   G
Sbjct: 290 HAPAGLKGRYIG 301

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
           FS   L LS N L     +   S  ELQ LDLS  ++++    +  +L  L  L L+ N 
Sbjct: 52  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111
Query: 575 FIQKIPI-EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFE 632
            IQ + +     L  L KL      L     F I ++K+L++LN+ HN +  F +P  F 
Sbjct: 112 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 170
Query: 633 GMHNLSHIDISYNELQG 649
            + NL H+D+S N++Q 
Sbjct: 171 NLTNLEHLDLSSNKIQS 187

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
           FS   L LS N L     +   S  ELQ LDLS  ++++    +  +L  L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 575 FIQKIPI-EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFE 632
            IQ + +     L  L KL      L     F I ++K+L++LN+ HN +  F +P  F 
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 633 GMHNLSHIDISYNELQG 649
            + NL H+D+S N++Q 
Sbjct: 147 NLTNLEHLDLSSNKIQS 163

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
           LQ LD+++ H+  E+P  L  L +L KL+LS N+          +   L +L +  N  R
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 553 SWI-PKSIGNLLKLRYLNLSNNQFIQK--IPIEVEKLIHLSKLDLSYN--FLGKEMPFQI 607
             +    + NL  LR L+LS++         +++  L HL  L+LSYN     K   F+ 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 608 CNMKSLEKLNLCHNNLSGFIPRC-FEGMH-----NLSH--IDISYNELQGPIPNSTTFKD 659
           C    LE L+L    L     +  F+ +H     NLSH  +DIS  +L   +P     + 
Sbjct: 399 C--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---ALQH 453
Query: 660 ARMEGNKGLCGNIK 673
             ++GN    GNI+
Sbjct: 454 LNLQGNHFPKGNIQ 467

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH--GPIPQEIGQLSLINELA 185
             +S   HLD  NN LT  +    GHL +L +L   +NQL     I +   Q+  + +L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 186 LCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF 245
           +  N++                        +D         KS+ +L++S N L+ +I  
Sbjct: 381 ISQNSV-----------------------SYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVM 304
            L     + +L L+SN +   IP  +  LE+L +L+++ NQL  S+P  +   L+SL  +
Sbjct: 418 CLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKI 473
Query: 305 SLFSNSLSSFIPPI 318
            L +N      P I
Sbjct: 474 WLHTNPWDCSCPRI 487

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            +  L+SI TLDL+  Q++   P  L  LSNL +LYL  N ++   P  +  L +L  L 
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
           +   Q+S   P  L NLS LT +    N +S   P  L +L +L  + L  NQ++ V P
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
           S +T+D S   L+ S+P  +   +   +LYLY N ++   P V   L  L +LDL  NQL
Sbjct: 18  SGTTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
           +         L+ LT +SL  N L S       NLKSL+ + L
Sbjct: 75  TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 135/325 (41%), Gaps = 69/325 (21%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
           L+ L++L+L  NQ+T + P  + +L +L +LY   N++       +  L+ + EL L  +
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQ-LSGSIPFSLG 248
           N+    P                          L NL    +L+L  N  LS   P S  
Sbjct: 121 NISDISP--------------------------LANLTKXYSLNLGANHNLSDLSPLS-- 152
Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           N + L  L +  + +    P  I NL  L  L L+ NQ+    P  L +L+SL   + + 
Sbjct: 153 NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIG 368
           N ++   P  + N   L++L +  N++  + P                          + 
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--------------------------LA 240
Query: 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
            L  +  LE+ TN++     +++ +LT+L  +N+  N +S      L NL+ L  +  N 
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNN 296
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQN 453
           N L  +  E  G   NLT L LSQN
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQN 321

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
           GT +   +    S+P  I  +   Q+L +  N I    P     L +L +L L  NQL G
Sbjct: 21  GTTVDCRSKRHASVPAGIPTN--AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 530 GMPFEL-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIH 588
            +P  +  SLT+L  LDL  N+L          L+ L+ L +  N+ + ++P  +E+L H
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTH 136
Query: 589 LSKLDLSYNFLGKEMP 604
           L+ L L  N L K +P
Sbjct: 137 LTHLALDQNQL-KSIP 151

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 36/233 (15%)
Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK-SLRNLTSLERVRFNQNNLSGKVYE 437
           C+ +    +P S+ + T   L+++  N+LS    + +   LT+L  +  + N+L+    E
Sbjct: 25  CSKQQLPNVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
           AF   PNL +LDLS N+ +            L  F+ S             +   L+VL 
Sbjct: 83  AFVPVPNLRYLDLSSNHLHT-----------LDEFLFS-------------DLQALEVLL 118
Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL----GSLTELQYLDLSANKLRS 553
           + +NHIV         +  L KL LS NQ+S   P EL      L +L  LDLS+NKL+ 
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ 606
            +P  + +L KL    + N  ++   P+E +  ++       Y  L   M FQ
Sbjct: 178 -LP--LTDLQKLPAW-VKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ 226

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
           S +T+D S   L+ S+P  +   +   +LYLY N ++   P V   L  L +LDL  NQL
Sbjct: 10  SGTTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
           +         L+ LT +SL  N L S       NL+SL+ + L
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 87  INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV 146
           ++L S GL  TL +  F     L  LNL +N +         +L++L  L L NNQL  +
Sbjct: 40  LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXX 206
                 HL QL  LY   NQL         +L+ + EL L  N L   IP          
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG-------- 149
Query: 207 XXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLS 264
                    FD        L ++ TL LS NQL  S+P  +   L  L  + L+ N   
Sbjct: 150 --------AFD-------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
           LT+L +L+L  N+L++       +L +L  L L+NNQ +  +P+ V + L  L KL L  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           N L K +P  + + +  L++L L  N L       F+ + NL  + +S N+LQ
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG 600
           ++  DLS +K+ + +     +   L  L L+ N+  +        L HL KL+LS NFLG
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 601 KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
                   N+  LE L+L +N++     + F G+ NL  + +  N+L+  +P+
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 87  INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV 146
           ++L S GL  TL +  F     L  LNL +N +         +L++L  L L NNQL  +
Sbjct: 40  LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXX 206
                 HL QL  LY   NQL         +L+ + EL L  N L   IP          
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG-------- 149
Query: 207 XXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLS 264
                    FD        L ++ TL LS NQL  S+P  +   L  L  + L+ N   
Sbjct: 150 --------AFDK-------LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
           LT+L +L+L  N+L++       +L +L  L L+NNQ +  +P+ V + L  L KL L  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           N L K +P  + + +  L++L L  N L       F+ + NL  + +S N+LQ
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 12/259 (4%)
Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI 459
           +N+ ++  S     + R  T ++ +     +L+G      G + +L  L L+ N+F    
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMN-SLKKLVLNANSFDQLC 316
Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGE--IPVQLAKLFS 516
             N  +FP L    +  N     +     E  + LQ LD+S + I       +QL  L  
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS-IGNLLKLRYLNLSN--- 572
           L  L LS N+  G          +L+ LD++   L    P S   NL  LR LNLS+   
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYN--FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
           +   Q +   ++ L HL+    S+    + K    Q+  + SLE L L   NL     + 
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQM--VGSLEILILSSCNLLSIDQQA 494
Query: 631 FEGMHNLSHIDISYNELQG 649
           F G+ N++H+D+S+N L G
Sbjct: 495 FHGLRNVNHLDLSHNSLTG 513

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
           +T+D S   L+ S+P  +   +   +LYLY N ++   P V   L  L +LDL  NQL+ 
Sbjct: 12  TTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
                   L+ LT +SL  N L S       NLKSL+ + L
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 138/317 (43%), Gaps = 28/317 (8%)
Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS--LRNLTSLERVRFNQNNL-S 432
           L+L ++++    P +   L  L  + +    LS  + K    RNL +L R+  ++N + S
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 433 GKVYEAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES 490
             ++ +FG   +L  +D S N  +   E          L  F ++ N++   + ++ G+ 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 491 FK------LQVLDISSNHIVGEIPVQLAKLFSLNK---LILSLNQLSGGMPFE------- 534
                   L++LD+S N    +I    +   S ++   LIL+ + +  G  F        
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 535 --LGSLTE--LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHL 589
                L    +++LDLS   + S   +    L  L+ LNL+ N+ I KI  E    L +L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNL 316
Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
             L+LSYN LG+        +  +  ++L  N+++    + F+ +  L  +D+  N L  
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375
Query: 650 PIPNSTTFKDARMEGNK 666
            I    +  D  + GNK
Sbjct: 376 TIHFIPSIPDIFLSGNK 392

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
           L  LYL  NSL+  +P+ I NL +L  LDLS N+L+ S+P  LG+   L     F N ++
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 313 SFIPPILGNLKSLSALGLHINQL 335
           + +P   GNL +L  LG+  N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPL 328

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI 293
           L+ NQ++   P    +L NL  LY  SN L+     V   L  L QLDL++N L  SIP 
Sbjct: 40  LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 294 -SLGNLSSLTVMSLFSN 309
            +  NL SLT + L++N
Sbjct: 99  GAFDNLKSLTHIYLYNN 115

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 32/262 (12%)
Query: 414 SLRNLTSLER-----VRFNQNNLSG--------KVYEA--FGYHPNLTFLDLSQNNFYGE 458
           S  ++ SLE+     + FN NN+ G         ++++  FG  PNL+ +     N   +
Sbjct: 166 SREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQ 225
Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFS-L 517
            S     F  +    +S   + G   + + ES  LQ       H   +I     + F+ L
Sbjct: 226 -SLWLGTFEDIDDEDISSAMLKGLCEMSV-ESLNLQ------EHRFSDISSTTFQCFTQL 277
Query: 518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
            +L L+   L G +P  +  L  L+ L LS N        S  N   L +L +  N  ++
Sbjct: 278 QELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VK 334
Query: 578 KIPIEV---EKLIHLSKLDLSYNFLGKE--MPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
           K+ + V   EKL +L  LDLS+N +        Q+ N+  L+ LNL HN   G   + F+
Sbjct: 335 KLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK 394
Query: 633 GMHNLSHIDISYNELQGPIPNS 654
               L  +D+++  L    P S
Sbjct: 395 ECPQLELLDLAFTRLHINAPQS 416

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
           SIP  + E+ K   LD+S+N I       L +  +L  L+L+ N ++        SL  L
Sbjct: 45  SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL----SYN 597
           ++LDLS N L +        L  L +LNL  N +  K   E     HL+KL +    + +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD 160
Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
              K        +  LE+L +  ++L  + P+  + + N+SH+
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 47/109 (43%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
           V   L ++  L L +NQL          L+NL  LYLY N L      V   L +L +LD
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
           L  NQL          L+ L  +SL  N L S    +   L SL+ + L
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
           SIP  + E+ K   LD+S+N I       L +  +L  L+L+ N ++        SL  L
Sbjct: 19  SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL----SYN 597
           ++LDLS N L +        L  L +LNL  N +  K   E     HL+KL +    + +
Sbjct: 77  EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD 134
Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
              K        +  LE+L +  ++L  + P+  + + N+SH+
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	725
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-147
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-145
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-105
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-85
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-70
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  448 bits (1154), Expect = e-147
 Identities = 176/700 (25%), Positives = 295/700 (42%), Gaps = 86/700 (12%)

Query: 16  NLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVG 75
           +   S +    +E   L+ +K  L ++N  LL  W+              +  NPC + G
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPDKN--LLPDWS--------------SNKNPCTFDG 44

Query: 76  ISCN--------------------------QAERIISINLSSMGLNGTLQEFA------- 102
           ++C                               + S+ LS+  +NG++  F        
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 103 -----------------FSSFPHLVHLNLSFNIVFGTIP-PQVGNLSKLQHLDLGNNQLT 144
                              S   L  LN+S N +           L+ L+ LDL  N ++
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 145 GVIPPEI---GHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGN 201
           G             +L+ L    N++ G +   + +   +  L +  NN    I P LG+
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGD 221

Query: 202 LSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
            S L +  ++ N L       +     +  L++S NQ  G IP     L +L  L L  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 262 SLSGPIPSVI-GNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP-IL 319
             +G IP  + G  ++L  LDLS N   G++P   G+ S L  ++L SN+ S  +P   L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 320 GNLKSLSALGLHINQLNGVIPSSIGNLS-NLRLLYLYNNGFYGFVPEEIG--YLKSIFEL 376
             ++ L  L L  N+ +G +P S+ NLS +L  L L +N F G +   +      ++ EL
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 377 ELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY 436
            L  N   G IP ++ N +ELV +++  N+LSG IP SL +L+ L  ++   N L G++ 
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 437 EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL 496
           +   Y   L  L L  N+  GEI     N   L    +S N ++G IP  IG    L +L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
            +S+N   G IP +L    SL  L L+ N  +G +P  +   +      ++AN +     
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRY 575

Query: 557 KSIGNLLKLRYLNLSNN--QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
             I N    +  + + N  +F      ++ +L   +  +++    G        N  S+ 
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
            L++ +N LSG+IP+    M  L  +++ +N++ G IP+ 
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  442 bits (1139), Expect = e-145
 Identities = 172/616 (27%), Positives = 269/616 (43%), Gaps = 68/616 (11%)

Query: 86  SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG 145
            +++SS   +  +          L HL++S N + G     +   ++L+ L++ +NQ  G
Sbjct: 204 FLDVSSNNFSTGIPFL--GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 146 VIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSN 204
            IPP    L  L+ L    N+  G IP  + G    +  L L  N+ YG +PP  G+ S 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 205 LANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLS-NLGILYLYSNS 262
           L +  L++N     +P+  L  ++ +  LDLS N+ SG +P SL NLS +L  L L SN+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 263 LSGPIPSVIGN--LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
            SGPI   +      +L +L L  N  +G IP +L N S L  + L  N LS  IP  LG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
           +L  L  L L +N L G IP  +  +  L  L L                          
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF------------------------ 475

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
           N L G IP  + N T L  +++  N L+G IPK +  L                      
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---------------------- 513

Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500
              NL  L LS N+F G I     +   L    ++ N  +G+IP  + +    Q   I++
Sbjct: 514 --ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAA 567

Query: 501 NHIVGEIPVQLAKLFSLNKLILSLN--QLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
           N I G+  V +       +   + N  +  G    +L  L+     ++++         +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 559 IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL 618
             N   + +L++S N     IP E+  + +L  L+L +N +   +P ++ +++ L  L+L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 619 CHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST---TFKDARMEGNKGLCGNIKGL 675
             N L G IP+    +  L+ ID+S N L GPIP      TF  A+   N GLCG    L
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY--PL 745

Query: 676 PSCKAFTSCKQASRKK 691
           P C    +   A  ++
Sbjct: 746 PRCDPSNADGYAHHQR 761

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  313 bits (804), Expect = 4e-96
 Identities = 120/381 (31%), Positives = 184/381 (48%), Gaps = 8/381 (2%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGN--LSKLQHLDLGN 140
            +  ++LS    +G L E   +    L+ L+LS N   G I P +     + LQ L L N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 141 NQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLG 200
           N  TG IPP + + ++L SL+   N L G IP  +G LS + +L L  N L G IP  L 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 201 NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
            +  L    L+ N L   IP  L N  +++ + LS N+L+G IP  +G L NL IL L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
           NS SG IP+ +G+  SL+ LDL+ N  +G+IP ++   S      + +N ++      + 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 579

Query: 321 NLKSLSALGLHIN--QLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
           N           N  +  G+    +  LS      + +  + G          S+  L++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
             N L G IP  IG++  L ++N+  N +SG IP  + +L  L  +  + N L G++ +A
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 439 FGYHPNLTFLDLSQNNFYGEI 459
                 LT +DLS NN  G I
Sbjct: 700 MSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 588 HLSKLDLSYNFL---GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644
            ++ +DLS   L      +   + ++  LE L L +++++G +   F+   +L+ +D+S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 645 NELQGPIPNSTTF 657
           N L GP+   T+ 
Sbjct: 110 NSLSGPVTTLTSL 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  336 bits (863), Expect = e-105
 Identities = 124/588 (21%), Positives = 211/588 (35%), Gaps = 31/588 (5%)

Query: 98  LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL 157
           L +       ++  LNL+ N +           S+L  LD+G N ++ + P     L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 158 RSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD 217
           + L    N+L     +     + + EL L  N++            NL    L++N L  
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIP--FSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
           +       L+++  L LS N++         +   S+L  L L SN +    P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 276 SLLQLDLSENQLSGSIPISLG---NLSSLTVMSLFSNSLSSFIPPILGNLK--SLSALGL 330
            L  L L+  QL  S+   L      +S+  +SL ++ LS+        LK  +L+ L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 331 HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN--------- 381
             N LN V   S   L  L   +L  N         +  L ++  L L  +         
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE---- 437
            L      S   L  L  +NM +N + G        L +L+ +  + +  S +       
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIP-LEIGESFKLQVL 496
               H  L  L+L++N      S  +     L    + +N I   +   E      +  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSW 554
            +S N  +       A + SL +L+L    L      P     L  L  LDLS N + + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 555 IPKSIGNLLKLRYLNLSNNQ--------FIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ 606
               +  L KL  L+L +N                 ++ L HL  L+L  N   +     
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 607 ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
             ++  L+ ++L  NNL+      F    +L  +++  N +       
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  281 bits (721), Expect = 7e-85
 Identities = 110/516 (21%), Positives = 194/516 (37%), Gaps = 26/516 (5%)

Query: 156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLL 215
                     +L   +P ++   + I  L L HN L      +    S L +  +  N +
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
               P +   L  +  L+L  N+LS     +    +NL  L+L SNS+     +     +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLK--SLSALGLHIN 333
           +L+ LDLS N LS +   +   L +L  + L +N + +     L      SL  L L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 334 QLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY---LKSIFELELCTNRLRGGIPHS 390
           Q+    P     +  L  L+L N      + E++       SI  L L  ++L      +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 391 IGNL--TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448
              L  T L ++++  N+L+     S   L  LE      NN+      +     N+ +L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 449 DLSQNNFYGEISFN---------WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS 499
           +L ++     IS           ++    L    +  N+I G           L+ L +S
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 500 SNHIVGEIPVQLA----KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
           ++                   L+ L L+ N++S         L  L+ LDL  N++   +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 556 PKS-IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK--EMPFQICNMKS 612
                  L  +  + LS N+++Q        +  L +L L    L      P     +++
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 613 LEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L  L+L +NN++       EG+  L  +D+ +N L 
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  267 bits (684), Expect = 1e-79
 Identities = 104/495 (21%), Positives = 187/495 (37%), Gaps = 25/495 (5%)

Query: 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG 241
           +E+A C +     +P  L   +N+    L +N L             +++LD+  N +S 
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 242 SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL 301
             P     L  L +L L  N LS           +L +L L  N +            +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN--LRLLYLYNNGF 359
             + L  N LSS        L++L  L L  N++  +    +   +N  L+ L L +N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIG---NLTELVLVNMCENHLSGPIPKSLR 416
             F P     +  +F L L   +L   +   +      T +  +++  + LS     +  
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 417 NL--TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL----- 469
            L  T+L  +  + NNL+    ++F + P L +  L  NN     S +      +     
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 470 ----GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
                   +S+ ++             L+ L++  N I G        L +L  L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 526 QLSGGMP----FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
             S        F   + + L  L+L+ NK+      +   L  L  L+L  N+  Q++  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 582 EV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF--IPRCFEGMHNLS 638
           +    L ++ ++ LSYN   +        + SL++L L    L      P  F+ + NL+
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 639 HIDISYNELQGPIPN 653
            +D+S N +     +
Sbjct: 484 ILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  245 bits (628), Expect = 1e-71
 Identities = 97/449 (21%), Positives = 167/449 (37%), Gaps = 26/449 (5%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
           S    D S  +L+  +P  L   +N+ +L L  N L     +       L  LD+  N +
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
           S   P     L  L V++L  N LS           +L+ L L  N +  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPH--SIGNLTELVLVNMCEN 405
           NL  L L +NG           L+++ EL L  N+++        I   + L  + +  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 406 HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGY---HPNLTFLDLSQNNFYGEI--S 460
            +    P     +  L  +  N   L   + E       + ++  L LS +        +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKL 520
           F    +  L    +S NN++           +L+   +  N+I       L  LF++  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 521 IL---------SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLS 571
            L         SL  L     F    L  L++L++  N +          L+ L+YL+LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 572 NNQFIQKIPIEVEKLIHLS-----KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF 626
           N+       +  E  + L+      L+L+ N + K        +  LE L+L  N +   
Sbjct: 362 NSF-TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 627 IP-RCFEGMHNLSHIDISYNELQGPIPNS 654
           +  + + G+ N+  I +SYN+      NS
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 3e-63
 Identities = 89/465 (19%), Positives = 165/465 (35%), Gaps = 30/465 (6%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVG---NLSKLQHLDLGNNQLTGVIPPEIGH 153
                 F +   L  L L+   +  ++  ++      + +++L L N+QL+         
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 154 LN--QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN 211
           L    L  L    N L+         L  +    L +NN+      SL  L N+    L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 212 NNLLFDSI---------PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN- 261
            +    SI               LK +  L++  N + G        L NL  L L ++ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 262 -SLSGPIPSVIGNLE--SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP- 317
            SL         +L    L  L+L++N++S     +   L  L V+ L  N +   +   
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 318 ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF--VPEEIGYLKSIFE 375
               L+++  + L  N+   +  +S   + +L+ L L           P     L+++  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLS--------GPIPKSLRNLTSLERVRFN 427
           L+L  N +       +  L +L ++++  N+L+        G     L+ L+ L  +   
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487
            N       E F     L  +DL  NN     +  + N   L +  +  N I+       
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 488 GESFK-LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
           G +F+ L  LD+  N            +  +N+   ++ +LS   
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 5e-55
 Identities = 84/376 (22%), Positives = 128/376 (34%), Gaps = 19/376 (5%)

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           S  V       L+     +  N+  L+   L  NQL  +  ++    S L  L +  N  
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
               PE    L  +  L L  N L      +    T L  +++  N +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG--EISFNWRNFPKLGTFIVSMN 477
           +L  +  + N LS           NL  L LS N          +      L    +S N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF---SLNKLILSLNQLSGGMPFE 534
            I    P       +L  L +++  +   +  +L       S+  L LS +QLS      
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 535 LGSL--TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL 592
              L  T L  LDLS N L      S   L +L Y  L  N         +  L ++  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 593 DLSYNF---------LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643
           +L  +F         L K   F    +K LE LN+  N++ G     F G+ NL ++ +S
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 644 YNELQGPIPNSTTFKD 659
            +        + TF  
Sbjct: 362 NSFTSLRTLTNETFVS 377

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  156 bits (397), Expect = 3e-40
 Identities = 68/296 (22%), Positives = 110/296 (37%), Gaps = 17/296 (5%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP-EIGHLNQLRS 159
           F   +   L  LNL+ N +          L  L+ LDLG N++   +   E   L  +  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 160 LYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG--PIPPSLGNLSNLANFYLNNNLLFD 217
           +Y   N+           +  +  L L    L      P     L NL    L+NN + +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 218 SIPLVLGNLKSISTLDLSKNQLS--------GSIPFSLGNLSNLGILYLYSNSLSGPIPS 269
               +L  L+ +  LDL  N L+        G   + L  LS+L IL L SN        
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG-NLKSLSAL 328
           V  +L  L  +DL  N L+        N  SL  ++L  N ++S    + G   ++L+ L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 329 GLHINQLNGVIPSSIG-----NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELC 379
            +  N  +    S        N ++  +  L ++      P   G+   +F+   C
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC 670

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
              +  D S  KL   +P  +     +  LNL++NQ  +       +   L+ LD+ +N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
           + K  P     +  L+ LNL HN LS    + F    NL+ + +  N +Q    N 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  307 bits (788), Expect = 5e-95
 Identities = 96/639 (15%), Positives = 203/639 (31%), Gaps = 71/639 (11%)

Query: 20  SIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWV---GI 76
           S  +   K+ LAL +   +L  +N      W+         ++++  K     W    G+
Sbjct: 23  SRTAEYIKDYLALKEIWDALNGKN------WSQQGFGTQPGANWNFNK-ELDMWGAQPGV 75

Query: 77  SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFN----IVFGTIPPQVGNLSK 132
           S N   R+  ++L   G +G + + A      L  L L  +          P  +     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 133 LQHLDLGNNQLTGVIPPEIGHLN--QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNN 190
            +                    +   L     + +     I +         ++    NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 191 LYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNL 250
           +   +  ++  L+ L  FY+ N+                   +    Q   +      NL
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNL 248

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL--------SGSIPISLGNLSSLT 302
            +L  + +Y+      +P+ +  L  +  ++++ N+                      + 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 303 VMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361
           ++ +  N+L +F +   L  +K L  L    NQL G +P + G+   L  L L  N    
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIP--HSIGNLTELVLVNMCENHLSG-------PIP 412
                 G+ + +  L    N+L+  IP      +++ +  ++   N +         P+ 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTF 472
            +     ++  +  + N +S    E F     L+ ++L  N                   
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK------------ 474

Query: 473 IVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGM 531
                N           ++ L  +D+  N +       +   L  L  + LS N  S   
Sbjct: 475 -----NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KF 528

Query: 532 PFELGSLTELQYLDLSANKLRSW------IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK 585
           P +  + + L+   +   +           P+ I     L  L + +N  I+K+  ++  
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI-- 585

Query: 586 LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
             ++S LD+  N         +C         L ++   
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  251 bits (644), Expect = 2e-74
 Identities = 76/579 (13%), Positives = 160/579 (27%), Gaps = 105/579 (18%)

Query: 93  GLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV--GNLSKLQHLDLGNNQLTGVIPPE 150
            LNG              + N +  +      P V   +  ++  L L     +G +P  
Sbjct: 41  ALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100

Query: 151 IGHLNQLRSLYFDVNQLHGP----IPQEIGQLSLINELALCHNNLYGPIPPSLG--NLSN 204
           IG L +L  L    +          P+ I       +      +            + S+
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 205 LANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264
           L    +N++    SI          + +    N ++  +  ++  L+ L   Y+ ++   
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFV 219

Query: 265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS 324
                     E+         Q   +  +   NL  LT + +++    + +P  L  L  
Sbjct: 220 AENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 325 LSALGLHINQL--------NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFEL 376
           +  + +  N+         +    +       ++++Y+  N                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------------- 319

Query: 377 ELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY 436
                     +  S+  + +L ++    N L G +P +  +   L  +    N ++    
Sbjct: 320 --------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA 370

Query: 437 EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL 496
              G+   +  L  + N          +  P                  +      +  +
Sbjct: 371 NFCGFTEQVENLSFAHNKL--------KYIPN---------------IFDAKSVSVMSAI 407

Query: 497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
           D S N I                           +         +  ++LS N++  +  
Sbjct: 408 DFSYNEIGSVDGKNF-----------------DPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL 616
           +       L  +NL  N  + +IP    K                       N   L  +
Sbjct: 451 ELFSTGSPLSSINLMGNM-LTEIPKNSLKDE----------------NENFKNTYLLTSI 493

Query: 617 NLCHNNLSGFIP-RCFEGMHNLSHIDISYNELQGPIPNS 654
           +L  N L+          +  L  ID+SYN      P  
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  279 bits (715), Expect = 8e-85
 Identities = 122/599 (20%), Positives = 208/599 (34%), Gaps = 35/599 (5%)

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLD 137
           C +    I+     +       +   +      +L+LSFN +         +  +LQ LD
Sbjct: 3   CVEVVPNITYQCMELNFY----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 138 LGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
           L   ++  +       L+ L +L    N +          LS + +L     NL      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 198 SLGNLSNLANFYL-NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI- 255
            +G+L  L    + +N +    +P    NL ++  LDLS N++       L  L  + + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 256 ---LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSNSL 311
              L L  N ++   P     +  L +L L  N  S ++    +  L+ L V  L     
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 312 SS------FIPPILGNLKSLSALGLHINQLN---GVIPSSIGNLSNLRLLYLYNNGFYGF 362
            +      F    L  L +L+     +  L+     I      L+N+    L +      
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
                 Y      LEL   +        + +L  L           G    S  +L SLE
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLE 350

Query: 423 RVR--FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNIS 480
            +    N  +  G   ++     +L +LDLS N     +S N+    +L       +N+ 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 481 GSIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM-PFELGSL 538
                 +  S   L  LDIS  H           L SL  L ++ N       P     L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
             L +LDLS  +L    P +  +L  L+ LN+S+N F        + L  L  LD S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 599 LGKEMPFQICNM-KSLEKLNLCHNNLSGFIPRC--FEGMHNLSHIDISYNELQGPIPNS 654
           +      ++ +   SL  LNL  N+ +         + + +   + +    ++   P+ 
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 5e-68
 Identities = 103/477 (21%), Positives = 175/477 (36%), Gaps = 31/477 (6%)

Query: 197 PSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGIL 256
           P +  + N+    +  N     IP  L    S   LDLS N L     +S  +   L +L
Sbjct: 2   PCVEVVPNITYQCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 257 YLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIP 316
            L    +         +L  L  L L+ N +      +   LSSL  +     +L+S   
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 317 PILGNLKSLSALGLHINQLNGV-IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSI-- 373
             +G+LK+L  L +  N +    +P    NL+NL  L L +N        ++  L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 374 --FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK-SLRNLTSLERVR----- 425
               L+L  N +   I         L  + +  N  S  + K  ++ L  LE  R     
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 426 -FNQNNLSGKVYEAFGYHPNLTFLDLS---QNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
             N+ NL      A     NLT  +      + +  +I   +     + +F +    I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
                   +F  Q L++ +        ++L  L  L           GG  F    L  L
Sbjct: 297 VKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDLPSL 349

Query: 542 QYLDLSANKL--RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           ++LDLS N L  +    +S      L+YL+LS N  +  +      L  L  LD  ++ L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL 408

Query: 600 GKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
            +   F +  ++++L  L++ H +        F G+ +L  + ++ N  Q       
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  260 bits (666), Expect = 3e-81
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 23/312 (7%)

Query: 28  EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCN---QAERI 84
           +  ALL+ KK L N  +  L+SW               T      W+G+ C+   Q  R+
Sbjct: 7   DKQALLQIKKDLGNPTT--LSSWL------------PTTDCCNRTWLGVLCDTDTQTYRV 52

Query: 85  ISINLSSMGLNGTLQ-EFAFSSFPHLVHLNLS-FNIVFGTIPPQVGNLSKLQHLDLGNNQ 142
            +++LS + L        + ++ P+L  L +   N + G IPP +  L++L +L + +  
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 143 LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNL 202
           ++G IP  +  +  L +L F  N L G +P  I  L  +  +    N + G IP S G+ 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 203 SNLANF-YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
           S L     ++ N L   IP    NL +++ +DLS+N L G      G+  N   ++L  N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGN 321
           SL+  +   +G  ++L  LDL  N++ G++P  L  L  L  +++  N+L   IP   GN
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289

Query: 322 LKSLSALGLHIN 333
           L+         N
Sbjct: 290 LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  236 bits (605), Expect = 3e-72
 Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 7/273 (2%)

Query: 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLF--DSIPLVLGNLKSISTLDLSK-NQLSGS 242
            C+    G +  +      + N  L+   L     IP  L NL  ++ L +   N L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 243 IPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLT 302
           IP ++  L+ L  LY+   ++SG IP  +  +++L+ LD S N LSG++P S+ +L +L 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 303 VMSLFSNSLSSFIPPILGNLKSLS-ALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361
            ++   N +S  IP   G+   L  ++ +  N+L G IP +  NL NL  + L  N   G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
                 G  K+  ++ L  N L   +   +G    L  +++  N + G +P+ L  L  L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
             +  + NNL G++ +  G          + N 
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (519), Expect = 6e-60
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 7/269 (2%)

Query: 333 NQLNGVIPSSIGNLSNLRLLYLYNNGFYG--FVPEEIGYLKSIFELEL-CTNRLRGGIPH 389
               GV+  +      +  L L          +P  +  L  +  L +   N L G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
           +I  LT+L  + +   ++SG IP  L  + +L  + F+ N LSG +  +    PNL  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 450 LSQNNFYGEISFNWRNFPKLGTFI-VSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP 508
              N   G I  ++ +F KL T + +S N ++G IP     +  L  +D+S N + G+  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDAS 214

Query: 509 VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYL 568
           V      +  K+ L+ N L+  +  ++G    L  LDL  N++   +P+ +  L  L  L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 569 NLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
           N+S N    +IP     L        + N
Sbjct: 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (462), Expect = 7e-52
 Identities = 79/303 (26%), Positives = 126/303 (41%), Gaps = 39/303 (12%)

Query: 411 IPKSLRNLTSL----ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE--ISFNWR 464
           I K L N T+L               G + +       +  LDLS  N      I  +  
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 465 NFPKLGTFIVS-MNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILS 523
           N P L    +  +NN+ G IP  I +  +L  L I+  ++ G IP  L+++ +L  L  S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 524 LNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL-RYLNLSNNQFIQKIPIE 582
            N LSG +P  + SL  L  +    N++   IP S G+  KL   + +S N+   KIP  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
              L +L+ +DLS N L  +      + K+ +K++L  N+L+  + +      NL+ +D+
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL 251

Query: 643 SYNELQGPIPNS---------------------------TTFKDARMEGNKGLCGNIKGL 675
             N + G +P                               F  +    NK LCG+   L
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP--L 309

Query: 676 PSC 678
           P+C
Sbjct: 310 PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.9 bits (237), Expect = 2e-21
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
           +L  ++LS N++ G      G+    Q + L  N L   +  ++G    L  L    N++
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 168 HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL 221
           +G +PQ + QL  ++ L +  NNL G IP   GNL         NN      PL
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  264 bits (676), Expect = 3e-79
 Identities = 99/533 (18%), Positives = 181/533 (33%), Gaps = 16/533 (3%)

Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
            +  + L+   N L  +       L  L  L     Q++            ++ L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
            L      +L     L + +     +     + L N K++ +L L  N +S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESL--LQLDLSENQLSGSIPISLGNLSSLTVMSLF 307
              L +L   +N++       + +L+    L L+L+ N ++  I     + +    ++  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210

Query: 308 SNSLSSFIPPILGN--LKSLSALGLHINQLNGVIPSSIGNLSNLRL--LYLYNNGFYGFV 363
                  I   L N  ++SL            + P+    L  + +  + L  + F+   
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 364 PEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLER 423
                    + EL+L    L   +P  +  L+ L  + +  N        S  N  SL  
Sbjct: 271 SNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 424 VRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGTFIVSMNNIS 480
           +    N    ++         NL  LDLS ++       +   RN   L +  +S N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 481 GSIPLEIGESFKLQVLDISSNHIVG-EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
                   E  +L++LD++   +   +       L  L  L LS + L          L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 540 ELQYLDLSANKLRSWIPKSIG---NLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
            LQ+L+L  N       +       L +L  L LS              L  ++ +DLS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
           N L       + ++K +  LNL  N++S  +P     +     I++  N L  
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  248 bits (634), Expect = 3e-73
 Identities = 96/496 (19%), Positives = 176/496 (35%), Gaps = 15/496 (3%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           IP  +   +    L    N L      +   L NL    L    ++        +   + 
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
           TL L+ N L      +L     L  L+     +S      + N ++L  L L  N +S  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN-GVIPSSIGNLSNL 349
                     L V+   +N++       + +L+  + L L++N  +   I     + +  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 350 RLLYLYNNGFYGFVPEEIGY--LKSIFELELCTNRLRGGIPHSIGNLTELVLV--NMCEN 405
           + L          + + +    ++S++             P     L E+ +   N+ ++
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 406 HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRN 465
           +       +    + L+ +     +LS ++         L  L LS N F      +  N
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 466 FPKLGTFIVSMNNISGSIPLEIGESF-KLQVLDISSNHI--VGEIPVQLAKLFSLNKLIL 522
           FP L    +  N     +     E+   L+ LD+S + I       +QL  L  L  L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPI 581
           S N+             +L+ LDL+  +L+    +S   NL  L+ LNLS++        
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 582 EVEKLIHLSKLDLSYNFL---GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLS 638
             + L  L  L+L  N       +    +  +  LE L L   +LS      F  +  ++
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 639 HIDISYNELQGPIPNS 654
           H+D+S+N L      +
Sbjct: 504 HVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  245 bits (627), Expect = 4e-72
 Identities = 94/492 (19%), Positives = 174/492 (35%), Gaps = 16/492 (3%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQ 156
            + E  F S   L  L L+ N +       +     L+HL      ++ +    + +   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 157 LRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN-NNLL 215
           L SLY   N +      +      +  L   +N ++      + +L    N  LN N   
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN--LSNLGILYLYSNSLSGPIPSVIGN 273
              I     +     +L+    Q    I   L N  + +L +            P+V   
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 274 LE--SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
           L   S+  ++L ++        +    S L  + L +  LS  +P  L  L +L  L L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLS 309

Query: 332 INQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE-IGYLKSIFELELCTNRLR--GGIP 388
            N+   +   S  N  +L  L +  N     +    +  L+++ EL+L  + +       
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 389 HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE-AFGYHPNLTF 447
             + NL+ L  +N+  N       ++ +    LE +      L  K  +  F     L  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK----LQVLDISSNHI 503
           L+LS +         +   P L    +  N+       +   S +    L++L +S   +
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN-SLQTLGRLEILVLSFCDL 488

Query: 504 VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL 563
                     L  +N + LS N+L+      L  L  + YL+L++N +   +P  +  L 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547

Query: 564 KLRYLNLSNNQF 575
           + R +NL  N  
Sbjct: 548 QQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  238 bits (610), Expect = 1e-69
 Identities = 95/488 (19%), Positives = 174/488 (35%), Gaps = 15/488 (3%)

Query: 179 SLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ 238
             +N+   C N     IP +L   ++      + N+L          L +++ LDL++ Q
Sbjct: 11  KEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 239 LSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNL 298
           +      +  +   L  L L +N L     + +   ++L  L   +  +S    I L N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 299 SSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLY-NN 357
            +L  + L SN +SS   P     + L  L    N ++ +    + +L     L L  N 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 358 GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN--LTELVLVNMCENHLSGPIPKSL 415
                +            L     +    I   + N  +  L L    +       P   
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 416 RNL--TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFI 473
             L   S+E +   ++         F     L  LDL+  +   E+         L   +
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLV 307

Query: 474 VSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQL--SGG 530
           +S N       +       L  L I  N    E+    L  L +L +L LS + +  S  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHL 589
              +L +L+ LQ L+LS N+  S   ++     +L  L+L+  +   K      + L  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC---FEGMHNLSHIDISYNE 646
             L+LS++ L          + +L+ LNL  N+      +     + +  L  + +S+ +
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 647 LQGPIPNS 654
           L     ++
Sbjct: 488 LSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 8e-58
 Identities = 88/449 (19%), Positives = 150/449 (33%), Gaps = 53/449 (11%)

Query: 211 NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
           N  L  + IP  L    S   L+ S N L      +   L NL  L L    +       
Sbjct: 21  NLGL--NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
             +   L  L L+ N L      +L    +L  +      +SS     L N K+L +L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 331 HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR-GGIPH 389
             N ++ +          L++L   NN  +    E++  L+    L L  N     GI  
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
              +      +N         I K L+N T                        +L    
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI----------------------QSLWLGT 234

Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509
               +        +    ++                       ++ +++  ++       
Sbjct: 235 FEDMDDEDISPAVFEGLCEM----------------------SVESINLQKHYFFNISSN 272

Query: 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN 569
                  L +L L+   LS  +P  L  L+ L+ L LSANK  +    S  N   L +L+
Sbjct: 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 570 LSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGF 626
           +  N    ++     E L +L +LDLS++ +        Q+ N+  L+ LNL +N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 627 IPRCFEGMHNLSHIDISYNELQGPIPNST 655
               F+    L  +D+++  L+     S 
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (478), Expect = 3e-51
 Identities = 90/445 (20%), Positives = 156/445 (35%), Gaps = 20/445 (4%)

Query: 97  TLQEFAFSSFPHL--VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGH- 153
            L +   SS      + LNL+ N     I P   + +  Q L+ G  Q   VI   + + 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 154 -LNQLRSLYFDVNQLHGPIPQEIGQLSLIN--ELALCHNNLYGPIPPSLGNLSNLANFYL 210
            +  L    F+        P     L  ++   + L  +  +     +    S L    L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 211 NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS- 269
               L   +P  L  L ++  L LS N+       S  N  +L  L +  N+    + + 
Sbjct: 286 TATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 270 VIGNLESLLQLDLSENQL--SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327
            + NLE+L +LDLS + +  S    + L NLS L  ++L  N   S           L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 328 LGLHINQLNGVIP-SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG 386
           L L   +L      S   NL  L++L L ++       +    L ++  L L  N    G
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 387 I---PHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHP 443
                +S+  L  L ++ +    LS     +  +L  +  V  + N L+    EA  +  
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
            +  L+L+ N+    +        +  T  +  N +  +        + L+    +   +
Sbjct: 525 GIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWYKENMQKL 579

Query: 504 VGEIPVQLAKLFSLNKLILSLNQLS 528
                        L  + LS   LS
Sbjct: 580 EDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  176 bits (448), Expect = 2e-47
 Identities = 66/384 (17%), Positives = 123/384 (32%), Gaps = 32/384 (8%)

Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI 339
            +     L+  IP +L   +S   +    N L +        L +L+ L L   Q+  + 
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 340 PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL 399
             +  +   L  L L  N         +   K++  L      +       + N   L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI 459
           + +  NH+S            L+ + F  N +     E        T L L+ N      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG----- 188

Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA--KLFSL 517
                            N+I+  I     +S   Q L+      +  I   L    + SL
Sbjct: 189 -----------------NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 518 NKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
                            FE      ++ ++L  +   +    +      L+ L+L+    
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH- 289

Query: 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGM 634
           + ++P  +  L  L KL LS N           N  SL  L++  N     +   C E +
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 635 HNLSHIDISYNELQGPIPNSTTFK 658
            NL  +D+S+++++     +   +
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  174 bits (444), Expect = 9e-47
 Identities = 76/392 (19%), Positives = 130/392 (33%), Gaps = 15/392 (3%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGN--LSKLQHLDLGN 140
             +S+NL+   +   ++  AF        LN         I   + N  +  L      +
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 141 NQLTGVIPPEIGHL--NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS 198
                + P     L    + S+    +             S + EL L   +L   +P  
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSG 296

Query: 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI-PFSLGNLSNLGILY 257
           L  LS L    L+ N   +   +   N  S++ L +  N     +    L NL NL  L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 258 LYSNSL--SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315
           L  + +  S      + NL  L  L+LS N+       +      L ++ L    L    
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 316 PP-ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG---YLK 371
                 NL  L  L L  + L+         L  L+ L L  N F     ++      L 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 372 SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNL 431
            +  L L    L     H+  +L  +  V++  N L+    ++L +L  +  +    N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 432 SGKVYEAFGYHPNLTFLDLSQNNFYGEISFNW 463
           S  +            ++L QN      S  +
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
            LS   L+  + + AF+S   + H++LS N    +   +  +  K  +L+L +N ++ ++
Sbjct: 482 VLSFCDLSS-IDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGIYLNLASNHISIIL 539

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
           P  +  L+Q R++    N L          +  +         L         N   L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595

Query: 208 FYLNNNLL 215
             L++  L
Sbjct: 596 VRLSDVTL 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  267 bits (685), Expect = 2e-78
 Identities = 82/571 (14%), Positives = 176/571 (30%), Gaps = 76/571 (13%)

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
            N   ++        + N  ++  L L      G +P  IG L +L+ L F  +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 172 PQEIGQ-------LSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLG 224
                +           + + + +  ++      L     L +    N  +         
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 225 NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE 284
           +LK     +L+ N+++  I  ++  L+ L I+Y  ++  +    +V          +   
Sbjct: 424 SLKDTQIGNLT-NRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDY 476

Query: 285 NQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV------ 338
            +   +  +S  NL  LT + L++    + +P  L +L  L +L +  N+          
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 339 ---IPSSIGNLSNLRLLYLYNNGFYGFVPE-EIGYLKSIFELELCTNRLRGGIPHSIGNL 394
              +         +++ Y+  N    F     +  +  +  L+   N++R     + G  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTN 594

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG-KVYEAFGYHPNLTFLDLSQN 453
            +L  + +  N +             +E + F+ N L              +  +D S N
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 454 NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAK 513
               E                     + S  ++  +      + +S N I        A 
Sbjct: 655 KIGSEGR-------------------NISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 514 LFSLNKLILSLNQLS-------GGMPFELGSLTELQYLDLSANKLRSWIPKSI--GNLLK 564
              ++ +ILS N ++               +   L  +DL  NKL S +        L  
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           L  +++S N F    P +      L    + +                    +   N + 
Sbjct: 755 LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ------------------RDAEGNRIL 795

Query: 625 GFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
              P       +L  + I  N+++  +    
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  267 bits (683), Expect = 5e-78
 Identities = 89/635 (14%), Positives = 194/635 (30%), Gaps = 72/635 (11%)

Query: 25  STKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWV---GISCNQA 81
             K+  AL    ++L  +N    +       N T  S           W    G+  +  
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGT----INNTIHSLNWNFNKELDMWGDQPGVDLDNN 322

Query: 82  ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFN-------IVFGTIPPQVGNLSKLQ 134
            R+  ++L+  G  G + + A      L  L+   +       +          +  +  
Sbjct: 323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 135 HLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGP 194
            + +   ++       +   + L+       ++  PI ++        ++    N +   
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM-KPIKKDSRISLKDTQIGNLTNRITF- 439

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG 254
           I  ++  L+ L   Y  N+        V          +    +   +   S  NL +L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLT 494

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG---------SIPISLGNLSSLTVMS 305
            + LY+      +P  + +L  L  L+++ N+             +         + +  
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 306 LFSNSLSSFIPPI-LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVP 364
           +  N+L  F     L  +  L  L    N++      + G    L  L L  N       
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 365 EEIGYLKSIFELELCTNRLRGGIPH--SIGNLTELVLVNMCENHLSG-----PIPKSLRN 417
           +   +   +  L    N+L+  IP+  +  ++  +  V+   N +               
Sbjct: 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN 477
             +   V  + N +     E F     ++ + LS N           + P+         
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM--------TSIPE--------- 714

Query: 478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA--KLFSLNKLILSLNQLSGGMPFEL 535
           N           ++ L  +D+  N +   +        L  L+ + +S N  S   P + 
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQP 772

Query: 536 GSLTELQYLDLSANKLRSW------IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589
            + ++L+   +   +           P  I     L  L + +N  I+K+  ++     L
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQL 829

Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
             LD++ N         +C         L ++   
Sbjct: 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  212 bits (541), Expect = 2e-58
 Identities = 80/512 (15%), Positives = 170/512 (33%), Gaps = 67/512 (13%)

Query: 153 HLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN 212
            L +  ++   + +    I       ++   L   +   Y     +  +  N  NF    
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKEL 308

Query: 213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIG 272
           ++  D   + L N   ++ L L+     G +P ++G L+ L +L   ++S +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 273 NLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
              +    +  ++++      + L     L +  L  ++++    P +  +K  S + L 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLK 426

Query: 332 INQLNGV------IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG 385
             Q+  +      I  +I  L+ L+++Y  N+ F               +      +   
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYE 481

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
               S  NL +L  V +        +P  L +L                        P L
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL------------------------PEL 517

Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG 505
             L+++ N                      +      +  +     K+Q+  +  N++  
Sbjct: 518 QSLNIACNRGIS---------------AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 506 -EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
                 L K+  L  L    N++   +    G+  +L  L L  N++   IP+       
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTD 619

Query: 565 -LRYLNLSNNQFIQKIP--IEVEKLIHLSKLDLSYNFLGKE-----MPFQICNMKSLEKL 616
            +  L  S+N+ ++ IP     + +  +  +D SYN +G E              +   +
Sbjct: 620 QVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L +N +  F    F     +S I +S N + 
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (390), Expect = 4e-39
 Identities = 55/405 (13%), Positives = 114/405 (28%), Gaps = 32/405 (7%)

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
              +  I            LD    +       +  +  +        +         L 
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKEL-DMWGDQPGVDLD 320

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
           N   ++ L L      G +P +IG L+ L++L    +              +    E   
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 381 NRLRGGIPHSIG----NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF-NQNNLSGKV 435
           +R+R             L    L+    N      P    +  SL+  +  N  N    +
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495
            +A      L  +  + + F  +                       +  L       L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
           +++ +   + ++P  L  L  L  L ++ N+       +                    +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR---------------L 540

Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVE--KLIHLSKLDLSYNFLGKEMPFQICNMKSL 613
                   K++   +  N  +++ P      K++ L  LD  +N + + +         L
Sbjct: 541 ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKV-RHLEA-FGTNVKL 597

Query: 614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFK 658
             L L +N +             +  +  S+N+L+  IPN    K
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  241 bits (617), Expect = 1e-70
 Identities = 114/589 (19%), Positives = 190/589 (32%), Gaps = 55/589 (9%)

Query: 77  SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHL 136
            C +    I+       L     +          +++LSFN +         N S+LQ L
Sbjct: 6   PCIEVVPNITYQCMDQKL----SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196
           DL   ++  +       L+ L +L    N +    P     L+ +  L      L     
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 197 PSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
             +G L  L    + +N +    +P    NL ++  +DLS N +       L  L     
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 256 ----LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSN- 309
               L +  N +   I         L +L L  N  S +I    L NL+ L V  L    
Sbjct: 182 VNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 310 -----SLSSFIPPILGNLKSLSALGLHINQLN--GVIPSSIGNLSNLRLLYLYNNGFYGF 362
                +L  F P I+  L  ++     +   N           L+N+  + L        
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV----- 295

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
                    SI  LE             +    +   +++    L       L  L SL 
Sbjct: 296 ---------SIKYLE------------DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGTFIVSMNNIS 480
                 N  S  +       P+L++LDLS+N     G  S++      L    +S N   
Sbjct: 335 ---LTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLT 539
             +        +LQ LD   + +           L  L  L +S              LT
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 540 ELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
            L  L ++ N  +     ++  N   L +L+LS  Q  Q      + L  L  L++S+N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
           L          + SL  L+   N +            +L+  +++ N +
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (564), Expect = 3e-63
 Identities = 103/527 (19%), Positives = 178/527 (33%), Gaps = 29/527 (5%)

Query: 145 GVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSN 204
           G + P I  +  + +      +L   +P +I   S    + L  N L      S  N S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 205 LANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264
           L    L+   +          L  +S L L+ N +    P S   L++L  L      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 265 GPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLK 323
                 IG L +L +L+++ N +    +P    NL++L  + L  N + +     L  L+
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 324 SLSALGLHINQLN---GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY-LKSIFELELC 379
               + L ++        I         L  L L  N     + +     L  +    L 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 380 TNRLRGGI------PHSIGNLTELVL--VNMCENHLSGPIPKSLRNLTSLERVRFNQNNL 431
               +         P  +  L ++ +    +   +           L ++  +     ++
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 432 SGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF 491
                     H     L + +        F   + P L +  ++MN  S  I  +     
Sbjct: 298 KYLEDVPK--HFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGS--ISFKKVALP 350

Query: 492 KLQVLDISSNHI--VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
            L  LD+S N +   G          SL  L LS N     M      L ELQ+LD   +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 550 KLRSWIPKS-IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN-FLGKEMPFQI 607
            L+     S   +L KL YL++S              L  L+ L ++ N F    +    
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
            N  +L  L+L    L       F+ +H L  +++S+N L     + 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (529), Expect = 2e-58
 Identities = 102/480 (21%), Positives = 181/480 (37%), Gaps = 30/480 (6%)

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252
           G + P +  + N+    ++  L    +P  + +  S   +DLS N L     +S  N S 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKL--SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
           L  L L    +          L  L  L L+ N +    P S   L+SL  +      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 313 SFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLK 371
           S     +G L +L  L +  N ++   +P+   NL+NL  + L  N        ++ +L+
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 372 ----SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK-SLRNLTSLERVR- 425
                   L++  N +   I        +L  + +  N  S  I K  L+NL  L   R 
Sbjct: 178 ENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 426 -----FNQNNLSGKVYEAFGYHPNLTF--LDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
                 ++ NL            ++T     L+  N + +    +     +    ++  +
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
           I      ++ + FK Q L I    +          L  L  L L++N+ S    F+  +L
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSI--SFKKVAL 349

Query: 539 TELQYLDLSANKLR--SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
             L YLDLS N L        S      LR+L+LS N     +      L  L  LD  +
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH 408

Query: 597 NFLGKEMPFQ-ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
           + L +   F    +++ L  L++ + N        F G+ +L+ + ++ N  +    ++ 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (384), Expect = 7e-39
 Identities = 80/436 (18%), Positives = 131/436 (30%), Gaps = 87/436 (19%)

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
           T      +LS  +P  +   S+   + L  N L         N   L  LDLS  ++   
Sbjct: 15  TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
              +   L  L+ + L  N + SF P     L SL  L     +L  +    IG L  L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
            L + +N           ++ S              +P    NLT LV V++  N++   
Sbjct: 132 KLNVAHN-----------FIHSC------------KLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
               L+ L                             LD+S N                 
Sbjct: 169 TVNDLQFLREN--------------------PQVNLSLDMSLNPI--------------- 193

Query: 471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP-------VQLAKLFSLNKLILS 523
                       I  +  +  KL  L +  N     I          L     +      
Sbjct: 194 ----------DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 524 LNQLSGGMPFELGSLTELQY--LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
              L    P  +  L ++      L+     S        L  +  ++L+    I+ +  
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE- 301

Query: 582 EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641
           +V K      L +    L +   F   ++  L+ L L  N  S  I      + +LS++D
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLD 356

Query: 642 ISYNELQGPIPNSTTF 657
           +S N L      S + 
Sbjct: 357 LSRNALSFSGCCSYSD 372

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (317), Expect = 2e-30
 Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 13/287 (4%)

Query: 76  ISCNQAERIISINLSS-----MGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV--- 127
           I   Q ++  +++L       + +N     F   + P L +L+LS N             
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSD 372

Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQE-IGQLSLINELAL 186
              + L+HLDL  N    ++      L +L+ L F  + L           L  +  L +
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 187 CHNNLYGPIPPSLGNLSNLANFYL-NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPF 245
            + N           L++L    +  N+   +++  V  N  +++ LDLSK QL      
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMS 305
               L  L +L +  N+L     S    L SL  LD S N++  S  I      SL   +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLL 352
           L +NS++  I      L+ +      +  +  +  ++   ++   +L
Sbjct: 552 LTNNSVAC-ICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVL 597

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 1e-25
 Identities = 61/336 (18%), Positives = 111/336 (33%), Gaps = 43/336 (12%)

Query: 337 GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTE 396
           G +   I  + N+      +      VP++I    S   ++L  N L+    +S  N +E
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 397 LVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY 456
           L  +++    +     K+   L  L  +    N +      +F    +L  L   +    
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-- 115

Query: 457 GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG-EIPVQLAKLF 515
                                 ++      IG+   L+ L+++ N I   ++P   + L 
Sbjct: 116 ----------------------LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 516 SLNKLILSLNQLSGGMPFELGSLTEL----QYLDLSANKLRSWIPKSIGNLLKLRYLNLS 571
           +L  + LS N +      +L  L E       LD+S N +   I       +KL  L L 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLR 212

Query: 572 NNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL--------NLCHNN 622
            N     I    ++ L  L    L       E   +I     +E L         L + N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 623 LSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFK 658
                   F  + N+S + ++   ++        FK
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  199 bits (507), Expect = 1e-55
 Identities = 115/533 (21%), Positives = 189/533 (35%), Gaps = 50/533 (9%)

Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNN 190
              ++LDL  N L  +         +L+ L     ++          LS ++ L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 191 LYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQL-SGSIPFSLGN 249
           +      +   LS+L         L       +G+LK++  L+++ N + S  +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESL----LQLDLSENQLSGSIPISLGNLSSLTVMS 305
           L+NL  L L SN +     + +  L  +    L LDLS N ++  I         L  ++
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 306 LFSNSLSSFIPP-ILGNLKSLSALGL------HINQLNGVIPSSIGNLSNLRLLYLYNNG 358
           L +N  S  +    +  L  L    L      +   L     S++  L NL +       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 359 FYGFVPEEIGYLKSIFELE---LCTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKS 414
              ++ + I     +  +    L +  +      S       L LVN           KS
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIV 474
           L+ LT      F  N        +    P+L FLDLS+N                     
Sbjct: 327 LKRLT------FTSNKGGNA--FSEVDLPSLEFLDLSRNGL------------------- 359

Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE 534
              +  G        +  L+ LD+S N ++  +      L  L  L    + L     F 
Sbjct: 360 ---SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 535 -LGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKL 592
              SL  L YLD+S    R         L  L  L ++ N F +    ++  +L +L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 593 DLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           DLS   L +  P    ++ SL+ LN+  N L       F+ + +L  I +  N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  188 bits (479), Expect = 7e-52
 Identities = 101/498 (20%), Positives = 180/498 (36%), Gaps = 32/498 (6%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           IP  +        L L  N L      S  +   L    L+   +         +L  +S
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL-SG 289
           TL L+ N +      +   LS+L  L     +L+      IG+L++L +L+++ N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA----LGLHINQLNGVIPSSIGN 345
            +P    NL++L  + L SN + S     L  L  +      L L +N +N  I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 346 LSNLRLLYLYNNGFYGFVPEE-IGYLKSIFELELCTNRLRG---------GIPHSIGNLT 395
              L  L L NN     V +  I  L  +    L     R               + NLT
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
                    ++    I      LT++         +      ++  +     L+L    F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF 316

Query: 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI--VGEIPVQLAK 513
               +   ++  +L     + N    +      +   L+ LD+S N +   G        
Sbjct: 317 GQFPTLKLKSLKRL---TFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 514 LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSN 572
             SL  L LS N +   M      L +L++LD   + L+     S+  +L  L YL++S+
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 573 NQFIQKIPIEV-EKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIPRC 630
               +     +   L  L  L ++ N   +  +P     +++L  L+L    L    P  
Sbjct: 431 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 631 FEGMHNLSHIDISYNELQ 648
           F  + +L  ++++ N+L+
Sbjct: 490 FNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  185 bits (472), Expect = 9e-51
 Identities = 114/499 (22%), Positives = 184/499 (36%), Gaps = 30/499 (6%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L  ++F SFP L  L+LS      TI      +LS L  L L  N +  +       L+
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL-YGPIPPSLGNLSNLANFYLNNNL 214
            L+ L      L       IG L  + EL + HN +    +P    NL+NL +  L++N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 215 LFDSIPLVLGNLKSIS----TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS- 269
           +       L  L  +     +LDLS N ++  I         L  L L +N  S  +   
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 270 VIGNLESLLQLDLSENQLSGS---IPISLGNLSSLTVMSLFSNSLSSF------IPPILG 320
            I  L  L    L   +              L  L  +++    L+        I  +  
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
            L ++S+  L    +  V   S       + L L N  F  F   ++  LK    L   +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTS 334

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLS--GPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
           N+       S  +L  L  +++  N LS  G   +S    TSL+ +  + N +   +   
Sbjct: 335 NKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 439 FGYHPNLTFLDLSQNNFYGEISFN-WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
           F     L  LD   +N      F+ + +   L    +S  +   +          L+VL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 498 ISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
           ++ N            +L +L  L LS  QL    P    SL+ LQ L++++N+L+S   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 557 KSIGNLLKLRYLNLSNNQF 575
                L  L+ + L  N +
Sbjct: 512 GIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 6e-50
 Identities = 101/463 (21%), Positives = 167/463 (36%), Gaps = 31/463 (6%)

Query: 211 NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
             N     IP  L    S   LDLS N L     +S  +   L +L L    +       
Sbjct: 16  ELNF--YKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
             +L  L  L L+ N +      +   LSSL  +     +L+S     +G+LK+L  L +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 331 HINQLNGV-IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS----IFELELCTNRLRG 385
             N +    +P    NL+NL  L L +N        ++  L         L+L  N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPK-SLRNLTSLERVR------FNQNNLSGKVYEA 438
            I         L  + +  N  S  + K  ++ L  LE  R       N+ NL      A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 439 FGYHPNLTFLDLSQN---NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495
                NLT  +        +  +I   +     + +F +    I          +F  Q 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQH 308

Query: 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW- 554
           L++ +            KL SL +L  + N+           L  L++LDLS N L    
Sbjct: 309 LELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKG 363

Query: 555 -IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQI-CNMKS 612
              +S      L+YL+LS N  +  +      L  L  LD  ++ L +   F +  ++++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 613 LEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
           L  L++ H +        F G+ +L  + ++ N  Q       
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (320), Expect = 8e-31
 Identities = 69/350 (19%), Positives = 118/350 (33%), Gaps = 23/350 (6%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDL------GNNQLTGVIPP 149
            +Q  AF     L  L L  N     +       L+ L+   L          L      
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA---LCHNNLYGPIPPSLGNLSNLA 206
            +  L  L    F +  L   +   I   + +  ++   L    +               
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQ 307

Query: 207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS-- 264
           +  L N        L L +LK    L  + N+   +      +L +L  L L  N LS  
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFK 362

Query: 265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP-ILGNLK 323
           G          SL  LDLS N +  ++  +   L  L  +    ++L       +  +L+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 324 SLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNR 382
           +L  L +               LS+L +L +  N F      +I   L+++  L+L   +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 383 LRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS 432
           L    P +  +L+ L ++NM  N L          LTSL+++  + N   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (310), Expect = 1e-29
 Identities = 71/392 (18%), Positives = 127/392 (32%), Gaps = 42/392 (10%)

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG 337
           +     E      IP +L    S   + L  N L         +   L  L L   ++  
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL 397
           +   +  +LS+L  L L  N            L S+ +L      L       IG+L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 398 VLVNMCENHL-SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY 456
             +N+  N + S  +P+   NLT+LE +  + N +             +  L+LS +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--- 183

Query: 457 GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLF 515
                            +S+N ++  I     +  +L  L + +N     +    +  L 
Sbjct: 184 -----------------LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 516 SLNKLILSLNQLSGGM---PFELGSLTELQYLDLSANKL------RSWIPKSIGNLLKLR 566
            L    L L +         F+  +L  L  L +   +L         I      L  + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF 626
             +L +   I+++  +         L+L          F    +KSL++L    N     
Sbjct: 286 SFSLVSVT-IERVK-DFSYNFGWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 627 IPRCFEGMHNLSHIDISYNELQGPIPNSTTFK 658
                  + +L  +D+S N L      S +  
Sbjct: 341 FS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (278), Expect = 1e-25
 Identities = 60/259 (23%), Positives = 96/259 (37%), Gaps = 13/259 (5%)

Query: 82  ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN 141
             + S +L S+ +           + HL  +N  F             L  L+ L   +N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSN 335

Query: 142 QLTGVIPPEIGHLNQLRSLYFDVNQLH--GPIPQEIGQLSLINELALCHNNLYGPIPPSL 199
           +           L  L  L    N L   G   Q     + +  L L  N +   +  + 
Sbjct: 336 KGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 200 GNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYL 258
             L  L +    ++ L       V  +L+++  LD+S      +       LS+L +L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 259 YSNSLSGPIPS-VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317
             NS        +   L +L  LDLS+ QL    P +  +LSSL V+++ SN L S    
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 318 ILGNLKSLSALGLHINQLN 336
           I   L SL  + LH N  +
Sbjct: 513 IFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 7e-14
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQV--GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRS 159
            F     L HL+   +     +       +L  L +LD+ +             L+ L  
Sbjct: 391 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 160 LYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS 218
           L    N        +I  +L  +  L L    L    P +  +LS+L    + +N L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 219 IPLVLGNLKSISTLDLSKNQLSGSIP 244
              +   L S+  + L  N    S P
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  191 bits (487), Expect = 1e-53
 Identities = 115/500 (23%), Positives = 194/500 (38%), Gaps = 60/500 (12%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
            L++     LG   +T  +      L+Q+ +L  D   +                     
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-------------------- 59

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
                     +  L+NL     +NN L D  PL   NL  +  + ++ NQ++   P  L 
Sbjct: 60  ------SIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LA 109

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           NL+NL  L L++N ++   P  + NL +L +L+LS N +S     +L  L+SL  +S   
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-G 164

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368
           N ++   P  L NL +L  L +  N+++    S +  L+NL  L   NN         +G
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLG 218

Query: 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
            L ++ EL L  N+L+     ++ +LT L  +++  N +S   P  L  LT L  ++   
Sbjct: 219 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274

Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG 488
           N +S            LT L+L++N        +  N   L    +  NNIS   P+   
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV--S 328

Query: 489 ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA 548
              KLQ L   +N +       LA L ++N L    NQ+S      L +LT +  L L+ 
Sbjct: 329 SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 384

Query: 549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608
               +       N+     +       I   P  +      ++ D+++N           
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP-SYTNEVSY 441

Query: 609 NMKSLEKLNLCHNNLSGFIP 628
                  +       SG + 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (456), Expect = 2e-49
 Identities = 105/450 (23%), Positives = 176/450 (39%), Gaps = 38/450 (8%)

Query: 206 ANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265
           +     +  +          L       L K  ++ ++  +  +L  +  L      +  
Sbjct: 5   SATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK- 59

Query: 266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325
                +  L +L Q++ S NQL+   P  L NL+ L  + + +N ++   P  L NL +L
Sbjct: 60  -SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 326 SALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG 385
           + L L  NQ+  + P  + NL+NL  L L +N         +  L S+ +L    N++  
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
             P  + NLT L  +++  N +S      L  LT+LE +    N +S       G   NL
Sbjct: 170 LKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNL 223

Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG 505
             L L+ N      +    +   L    ++ N IS   PL      KL  L + +N I  
Sbjct: 224 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN 279

Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL 565
             P  LA L +L  L L+ NQL       + +L  L YL L  N +    P  + +L KL
Sbjct: 280 ISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 566 RYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSG 625
           + L   NN+        +  L +++ L   +N +    P    N+  + +L L     + 
Sbjct: 334 QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTN 389

Query: 626 FIPRCFEGMHNLSHIDISYNELQGPIPNST 655
                     N+S  +   N     I  +T
Sbjct: 390 APVNYKA---NVSIPNTVKNVTGALIAPAT 416

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  176 bits (449), Expect = 2e-48
 Identities = 102/402 (25%), Positives = 167/402 (41%), Gaps = 31/402 (7%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
                 +L  +N S N +    P  + NL+KL  + + NNQ+  + P  + +L  L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118

Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL 221
              NQ+    P  +  L+ +N L L  N +      +L  L++L      N +   +   
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDLK 171

Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            L NL ++  LD+S N++S      L  L+NL  L   +N +S   P  +G L +L +L 
Sbjct: 172 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS 341
           L+ NQL      +L +L++LT + L +N +S+  P  L  L  L+ L L  NQ++ + P 
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282

Query: 342 SIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401
            +  L+ L  L L  N         I  LK++  L L  N +    P  + +LT+L  + 
Sbjct: 283 -LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 402 MCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF 461
              N +S      L NLT++  +    N +S            +T L L+   +      
Sbjct: 338 FYNNKVSDVSS--LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVN 393

Query: 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
              N     T  V     +   P  I +       DI+ N  
Sbjct: 394 YKANVSIPNT--VKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  161 bits (409), Expect = 4e-43
 Identities = 95/385 (24%), Positives = 168/385 (43%), Gaps = 32/385 (8%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
             ++  +L  L L  N +  T    + NL+ L  L+L +N ++ +    +  L  L+ L 
Sbjct: 107 PLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLS 162

Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL 221
           F  NQ+    P  +  L+ +  L +  N +       L  L+NL +    NN + D  P 
Sbjct: 163 FG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP- 216

Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            LG L ++  L L+ NQL   I  +L +L+NL  L L +N +S   P  +  L  L +L 
Sbjct: 217 -LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS 341
           L  NQ+S   P++   L++LT + L  N L    P  + NLK+L+ L L+ N ++ + P 
Sbjct: 272 LGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326

Query: 342 SIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401
            + +L+ L+ L+ YNN         +  L +I  L    N++    P  + NLT +  + 
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 402 MCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN--FYGEI 459
           + +   +        N++    V+     L            + T  D++ N   +  E+
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP--ATISDGGSYTEPDITWNLPSYTNEV 439

Query: 460 SFNWRNFPKLGTFIVSMNNISGSIP 484
           S+ +     +G         SG++ 
Sbjct: 440 SYTFSQPVTIGK---GTTTFSGTVT 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  193 bits (493), Expect = 3e-52
 Identities = 119/558 (21%), Positives = 210/558 (37%), Gaps = 35/558 (6%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLINELALC 187
            L+  + L L  N +  V       L QL+ L          I +E    L  +  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSI--PLVLGNLKSISTLDLSKNQLSG-SIP 244
            + +Y   P +   L +L    L    L D++       NLK+++ LDLSKNQ+    + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLE--SLLQLDLSENQLSGSIPISLGN-LSSL 301
            S G L++L  +   SN +       +  L+  +L    L+ N L   + +  G  ++  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361
             M L    +S       GN  ++   G   N ++     S+    ++       +    
Sbjct: 202 RNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 362 FVPEEIGYLK--SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
                   L   S+  L+L    +          L +L ++N+  N ++    ++   L 
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
           +L+ +  + N L       F   P + ++DL +N+        ++   KL T  +  N +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE-LGSL 538
           +      I     +  + +S N +V  +P       + N + LS N+L        L  +
Sbjct: 375 T-----TIHFIPSIPDIFLSGNKLV-TLP---KINLTANLIHLSENRLENLDILYFLLRV 425

Query: 539 TELQYLDLSANKLRS-WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-----LIHLSKL 592
             LQ L L+ N+  S    ++      L  L L  N        E+       L HL  L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 593 DLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652
            L++N+L    P    ++ +L  L+L  N L+           NL  +DIS N+L  P P
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNP 543

Query: 653 NS-TTFKDARMEGNKGLC 669
           +   +     +  NK +C
Sbjct: 544 DVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  191 bits (488), Expect = 1e-51
 Identities = 122/571 (21%), Positives = 209/571 (36%), Gaps = 41/571 (7%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSL 160
                    L LSFN    T+       L +LQ L+LG+      I  E   +L  LR L
Sbjct: 20  PQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS--LGNLSNLANFYLNNNLLFD- 217
               ++++   P     L  + EL L    L   +       NL  L    L+ N +   
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLS--NLGILYLYSNSLSGPIPSVIGNLE 275
            +    G L S+ ++D S NQ+       L  L    L    L +NSL   +    G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 276 SLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
           +  + + L    +S       GN  ++ +   FSN++S      L     +   G   + 
Sbjct: 199 NPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 335 LNGVIPSSIGNL--SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
           +     ++   L  S++R L L +   +         LK +  L L  N++      +  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
            L  L ++N+  N L      +   L  +  +   +N+++    + F +   L  LDL  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG-EIPVQL 511
           N             P +    +S N +     +    +    ++ +S N +   +I   L
Sbjct: 372 NAL-----TTIHFIPSIPDIFLSGNKLVTLPKI----NLTANLIHLSENRLENLDILYFL 422

Query: 512 AKLFSLNKLILSLNQLSGGMPFEL-GSLTELQYLDLSANKLRSWIPKSI-----GNLLKL 565
            ++  L  LIL+ N+ S     +       L+ L L  N L+      +       L  L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 566 RYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           + L L++N  +  +P  V   L  L  L L+ N L   +        +LE L++  N L 
Sbjct: 483 QVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRL-TVLSHND-LPANLEILDISRNQLL 539

Query: 625 GFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
              P  F    +LS +DI++N+       ST
Sbjct: 540 APNPDVF---VSLSVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (391), Expect = 3e-39
 Identities = 102/508 (20%), Positives = 158/508 (31%), Gaps = 92/508 (18%)

Query: 179 SLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ 238
           S    +A         +P  L     L    L+ N +          L+ +  L+L    
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 239 LSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI--PISL 295
              +I   +  NL NL IL L S+ +    P     L  L +L L    LS ++      
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 296 GNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIGNLS--NLRLL 352
            NL +LT + L  N + S  + P  G L SL ++    NQ+  V    +  L    L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 353 YLYNNGFYGFVPEEIGYLKSIFE-LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
            L  N  Y  V  + G   + F  + L    + G       N   + +     N +S   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQ 232

Query: 412 PKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT 471
             SL     +    F  +N+                 D  QN F G    +         
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK----------------DPDQNTFAGLARSS--------- 267

Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
                                ++ LD+S   +          L  L  L L+ N+++   
Sbjct: 268 ---------------------VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLS 590
                 L  LQ L+LS N L      +   L K+ Y++L  N  I  I  +  + L  L 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQ 365

Query: 591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF---------------------IPR 629
            LDL  N L       I  + S+  + L  N L                        I  
Sbjct: 366 TLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 630 CFEGMHNLSHIDISYNELQGPIPNSTTF 657
               + +L  + ++ N          T 
Sbjct: 421 FLLRVPHLQILILNQNRFSS-CSGDQTP 447

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (328), Expect = 2e-31
 Identities = 81/451 (17%), Positives = 154/451 (34%), Gaps = 55/451 (12%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPP---QVGNLSKLQHLDLG 139
            +  ++LS   +       +F     L  ++ S N     +     +      L    L 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLA 182

Query: 140 NNQLTGVIPPEIGHLNQ------LRSLYFDVNQLHGPIP------------QEIGQLSLI 181
            N L   +  + G          L  L    N     I               +     I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 182 NELALCHNNLYGPIPPSLGNL--SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQL 239
                  +N+  P   +   L  S++ +  L++  +F     V   LK +  L+L+ N++
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLS 299
           +     +   L NL +L L  N L     S    L  +  +DL +N ++     +   L 
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLS-----------------ALGLHINQLNGV-IPS 341
            L  + L  N+L++     + ++  +                   + L  N+L  + I  
Sbjct: 363 KLQTLDLRDNALTTI--HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 342 SIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSI-----GNLT 395
            +  + +L++L L  N F     ++      S+ +L L  N L+      +       L+
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
            L ++ +  N+L+   P    +LT+L  +  N N L+   +       NL  LD+S+N  
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL 538

Query: 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
               + N   F  L    ++ N       L 
Sbjct: 539 L---APNPDVFVSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 78  CNQAERIISINLSSMGLNG----TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSK 132
            ++   +  + L    L       L    F    HL  L L+ N    ++PP V  +L+ 
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTA 505

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
           L+ L L +N+LT +          L  L    NQL  P P     LS+++   + HN   
Sbjct: 506 LRGLSLNSNRLTVL--SHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD---ITHNKFI 560

Query: 193 GPIP----PSLGNLSNLANFYLNNNLLFDSIPLVLGN-LKSISTLDLSKNQLSGSIPFSL 247
                    +  N +N+       ++         G  L S+ST    + ++  S+ FSL
Sbjct: 561 CECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

Query: 248 GNLSNLGIL 256
             +  + + 
Sbjct: 621 FIVCTVTLT 629

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  182 bits (464), Expect = 7e-50
 Identities = 106/492 (21%), Positives = 183/492 (37%), Gaps = 27/492 (5%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           IP  +   + +  L L  N +       L   +NL    L ++ +         +L S+ 
Sbjct: 20  IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG-PIPSVIGNLESLLQLDLSENQLSG 289
            LDLS N LS       G LS+L  L L  N      + S+  NL +L  L +   +   
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 290 SIP-ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN 348
            I  I    L+SL  + + + SL ++    L +++ +  L LH+++   ++      LS+
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 349 LRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408
           +R L L +     F    +   +    ++    R       S   L +L+   +  + + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV- 256

Query: 409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468
                   + T      FN +               +  L + Q   + ++S  +    K
Sbjct: 257 -----EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 469 LGTFIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQ---LAKLFSLNKLILSL 524
           +    V  + +   +P    +  K L+ LD+S N +V E            SL  L+LS 
Sbjct: 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 525 NQLS--GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
           N L         L +L  L  LD+S N     +P S     K+R+LNLS+   I+ +   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG-IRVVKTC 428

Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
           +     L  LD+S N L          +  L++L +  N L             L  + I
Sbjct: 429 I--PQTLEVLDVSNNNL-DSFSL---FLPRLQELYISRNKLKTLPDASL--FPVLLVMKI 480

Query: 643 SYNELQGPIPNS 654
           S N+L+      
Sbjct: 481 SRNQLKSVPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  177 bits (452), Expect = 3e-48
 Identities = 100/548 (18%), Positives = 181/548 (33%), Gaps = 67/548 (12%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164
              +  L+LSFN     I        + LQ L L ++++  +       L  L  L    
Sbjct: 25  TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 165 NQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIP-LV 222
           N L        G LS +  L L  N      +     NL+NL    + N   F  I  + 
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
              L S++ L++    L      SL ++ ++  L L+ +  +  +      L S+  L+L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
            +  L+      L      + M   +   S         L  L    L ++++       
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------E 257

Query: 343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNM 402
             + +   L     +       + +  L  +  + +    +                   
Sbjct: 258 FDDCTLNGLGDFNPSES-----DVVSELGKVETVTIRRLHIPQ----------------- 295

Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFN 462
              +L   +      L  ++R+    + +         +  +L FLDLS+N    E   N
Sbjct: 296 --FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI--VGEIPVQLAKLFSLNKL 520
                                         LQ L +S NH+  + +    L  L +L  L
Sbjct: 354 SACKGAWP---------------------SLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP 580
            +S N     MP       ++++L+LS+  +R  +   I     L  L++SNN  +    
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNN-LDSFS 447

Query: 581 IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
           +    L  L +L +S N L K +P        L  + +  N L       F+ + +L  I
Sbjct: 448 LF---LPRLQELYISRNKL-KTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 641 DISYNELQ 648
            +  N   
Sbjct: 503 WLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  173 bits (441), Expect = 9e-47
 Identities = 89/445 (20%), Positives = 171/445 (38%), Gaps = 21/445 (4%)

Query: 211 NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
           + +    SIP  L    ++ +LDLS N+++      L   +NL +L L S+ ++      
Sbjct: 14  SRSF--TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALG 329
             +L SL  LDLS+N LS       G LSSL  ++L  N   +  +  +  NL +L  L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 330 L-HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP 388
           + ++   + +       L++L  L +       +  + +  ++ I  L L  +     + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 389 HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448
                L+ +  + + + +L+      L        ++      S    E+F     L   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP 508
            L  +         + +    G    + +       L   E+  ++ L I   ++  ++ 
Sbjct: 250 ILELSE------VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 509 VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS---IGNLLKL 565
              + L  + ++ +  +++          L  L++LDLS N +     K+    G    L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 566 RYLNLSNNQF--IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623
           + L LS N    +QK    +  L +L+ LD+S N     MP      + +  LNL    +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI 422

Query: 624 SGFIPRCFEGMHNLSHIDISYNELQ 648
              +  C      L  +D+S N L 
Sbjct: 423 R-VVKTC--IPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (345), Expect = 4e-34
 Identities = 67/495 (13%), Positives = 139/495 (28%), Gaps = 90/495 (18%)

Query: 86  SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLT 144
            +NL             F +  +L  L +     F  I       L+ L  L++    L 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 145 GVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSN 204
                 +  +  +  L   +++    +      LS +  L L   NL       L     
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 205 LANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264
            +                   L  +    L  +++         + +  G+     +   
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESD 275

Query: 265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS 324
                      ++ +L + +  L   +      L  +  +++ ++ +         +LKS
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 325 LSALGLHINQLNGVI---PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN 381
           L  L L  N +        +  G   +L+ L L  N                        
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------------------------ 371

Query: 382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGY 441
                      +L  +               + L  L +L  +  ++N     + ++  +
Sbjct: 372 -----------HLRSM-----------QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 442 HPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
              + FL+LS                                         L+VLD+S+N
Sbjct: 409 PEKMRFLNLSSTGIR---VVKTCIPQ------------------------TLEVLDVSNN 441

Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
           ++     +    L  L +L +S N+L      +      L  + +S N+L+S        
Sbjct: 442 NL-DSFSLF---LPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 562 LLKLRYLNLSNNQFI 576
           L  L+ + L  N + 
Sbjct: 496 LTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (269), Expect = 2e-24
 Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 33/277 (11%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ 142
            +  +   +   +  + E        +  L++    +F  +      L K++ + + N++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 143 LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNL 202
           +  V      HL  L  L    N +                        Y       G  
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLM---------------------VEEYLKNSACKGAW 360

Query: 203 SNLANFYLNNNLL--FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
            +L    L+ N L        +L  LK++++LD+S+N     +P S      +  L L S
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
             +   + +     ++L  LD+S N L  S  +    L  L  + +  N L +   P   
Sbjct: 420 TGIRV-VKT--CIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLKTL--PDAS 470

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
               L  + +  NQL  V       L++L+ ++L+ N
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  172 bits (439), Expect = 3e-48
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 27/372 (7%)

Query: 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
              L      +    P    +L++     L    +T V+      L  +  L     ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKS 228
               Q I  L+ +  L L  N +    P  L NL  L N Y+  N +  +    L NL +
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           +  L L+++ +S   P  L NL+ +  L L +N       S + N+  L  L ++E+++ 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN 348
              PI   NL+ L  +SL  N +    P  L +L SL     ++NQ+  + P  + N++ 
Sbjct: 169 DVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 349 LRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408
           L  L + NN         +  L  +  LE+ TN++     +++ +LT+L ++N+  N +S
Sbjct: 223 LNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468
                 L NL+ L  +  N N L  +  E  G   NLT L LSQN+          +  K
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSK 334

Query: 469 LGTFIVSMNNIS 480
           + +   +   I 
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (436), Expect = 9e-48
 Identities = 75/331 (22%), Positives = 150/331 (45%), Gaps = 23/331 (6%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
                  +  L ++   V       +  L+ L++L+L  NQ+T + P  + +L +L +LY
Sbjct: 39  TQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94

Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL 221
              N++       +  L+ + EL L  +N+    P  L NL+ + +  L  N    S   
Sbjct: 95  IGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLS 149

Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            L N+  ++ L ++++++    P    NL++L  L L  N +    P  + +L SL    
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS 341
              NQ++   P  + N++ L  + + +N ++   P  L NL  L+ L +  NQ++ +  +
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259

Query: 342 SIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401
           ++ +L+ L++L + +N         +  L  +  L L  N+L       IG LT L  + 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 402 MCENHLSGPIPKSLRNLTSLERVRFNQNNLS 432
           + +NH++   P  L +L+ ++   F    + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  163 bits (416), Expect = 4e-45
 Identities = 85/419 (20%), Positives = 158/419 (37%), Gaps = 75/419 (17%)

Query: 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
           +TL      ++   P    +L+      L   S++  +      LES+ +L ++  +++ 
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
           SI   +  L++L  ++L  N ++   P  L NL  L+ L +  N++     S++ NL+NL
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
           R LYL  +         +  L  ++ L L  N                            
Sbjct: 113 RELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS------------------------ 146

Query: 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL 469
                L N+T L  +   ++ +            +L  L L+ N                
Sbjct: 147 -DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQ--------------- 188

Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
                    I    PL       L       N I    P  +A +  LN L +  N+++ 
Sbjct: 189 ---------IEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589
                L +L++L +L++  N++      ++ +L KL+ LN+ +NQ I  I   +  L  L
Sbjct: 236 --LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQL 289

Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           + L L+ N LG E    I  + +L  L L  N+++   P     +  +   D +   ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (387), Expect = 4e-41
 Identities = 78/352 (22%), Positives = 140/352 (39%), Gaps = 25/352 (7%)

Query: 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFY 360
              ++     ++   P    +L       L    +  V+      L ++  L +      
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 361 GFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS 420
               + I YL ++  L L  N++    P  + NL +L  + +  N ++     +L+NLT+
Sbjct: 58  SI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNIS 480
           L  +  N++N+S            +  L+L  N+   ++S    N   L    V+ + + 
Sbjct: 112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
              P  I     L  L ++ N I    P  LA L SL+     +NQ++   P  + ++T 
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG 600
           L  L +  NK+    P  + NL +L +L +  NQ I  I   V+ L  L  L++  N + 
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQIS 278

Query: 601 KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652
                   N+  L  L L +N L         G+ NL+ + +S N +    P
Sbjct: 279 DISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (338), Expect = 2e-34
 Identities = 69/333 (20%), Positives = 127/333 (38%), Gaps = 28/333 (8%)

Query: 322 LKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN 381
             +L+ L   INQ+         +L+      L               L+SI +L +   
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE 54

Query: 382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGY 441
           ++       I  LT L  +N+  N ++   P  L NL  L  +    N ++     A   
Sbjct: 55  KVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQN 108

Query: 442 HPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
             NL  L L+++N          N  K+ +  +  N+    +   +     L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165

Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
            +    P  +A L  L  L L+ NQ+    P  L SLT L Y     N++    P  + N
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN 219

Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
           + +L  L + NN+ I  +   +  L  L+ L++  N +      +  ++  L+ LN+  N
Sbjct: 220 MTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSN 275

Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
            +S         +  L+ + ++ N+L       
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEV 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  163 bits (414), Expect = 7e-44
 Identities = 99/503 (19%), Positives = 179/503 (35%), Gaps = 74/503 (14%)

Query: 122 TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181
            +P +  N+          ++     PP  G   ++                        
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----------A 73

Query: 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG 241
           +EL L +  L   +P    +L +L     + N L   +P +  +LKS+   + +   LS 
Sbjct: 74  HELELNNLGL-SSLPELPPHLESL---VASCNSL-TELPELPQSLKSLLVDNNNLKALSD 128

Query: 242 SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL 301
             P        L  L + +N L   +P  + N   L  +D+  N L   +P    +L  +
Sbjct: 129 LPP-------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

Query: 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361
                 +N L     P L NL  L+A+    N L  +         +L  +   NN    
Sbjct: 179 A---AGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE- 228

Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
               E+  L  +  +    N L+  +P    +L  L + +   N+L+  +P+  ++LT L
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD---NYLTD-LPELPQSLTFL 282

Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
           +      + LS          PNL +L+ S N     +     +   L    VS N +  
Sbjct: 283 DVSENIFSGLSELP-------PNLYYLNASSNEI-RSLCDLPPS---LEELNVSNNKLI- 330

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
            +P       +L+ L  S NH+  E+P     L  L+   +  N L    P    S+ +L
Sbjct: 331 ELPALPP---RLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLR-EFPDIPESVEDL 382

Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK 601
           +      + L   +P+   N   L+ L++  N  +++ P   E +     L ++   +  
Sbjct: 383 RMN----SHLAE-VPELPQN---LKQLHVETNP-LREFPDIPESVED---LRMNSERVVD 430

Query: 602 EMPFQICNMKSLEKLNLCHNNLS 624
              F       LE     H++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  159 bits (403), Expect = 3e-42
 Identities = 108/538 (20%), Positives = 196/538 (36%), Gaps = 101/538 (18%)

Query: 123 IPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL-- 180
           I P+  + + LQ     ++ LT  +P E  ++      Y   ++     P   G+     
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 181 -----------INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSI 229
                       +EL L +  L   +P    +L +L     + N L   +P +  +LKS+
Sbjct: 62  VSRLRDCLDRQAHELELNNLGL-SSLPELPPHLESL---VASCNSL-TELPELPQSLKSL 116

Query: 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
              + +   LS   P        L  L + +N L   +P  + N   L  +D+  N L  
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK- 166

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
            +P    +L  +      +N L     P L NL  L+A+    N L  +         +L
Sbjct: 167 KLPDLPPSLEFIA---AGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPDL----PLSL 217

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
             +   NN        E+  L  +  +    N L+  +P    +L  L + +   N+L+ 
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRD---NYLTD 271

Query: 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL 469
            +P+  ++LT L+      + LS          PNL +L+ S N                
Sbjct: 272 -LPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEI-------------- 309

Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
                   ++    P        L+ L++S+N ++ E+P    +L    +LI S N L+ 
Sbjct: 310 -------RSLCDLPP-------SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAE 351

Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589
            +P    +L +L    +  N LR   P    ++  LR  +      + ++P   E   +L
Sbjct: 352 -VPELPQNLKQL---HVEYNPLRE-FPDIPESVEDLRMNSH-----LAEVP---ELPQNL 398

Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
            +L +  N L +E P      +S+E L +    +        E    L      ++  
Sbjct: 399 KQLHVETNPL-REFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (360), Expect = 1e-36
 Identities = 94/490 (19%), Positives = 180/490 (36%), Gaps = 87/490 (17%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG 254
           I P   + + L     +++ L   +P+   N+KS +    + ++   + P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314
           +  L                    +L+L+   LS S+P    +L SL       NSL+  
Sbjct: 62  VSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPHLESL---VASCNSLTE- 105

Query: 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF 374
           +P +  +LKSL     ++  L+ + P        L  L + NN        E+     + 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL--PELQNSSFLK 156

Query: 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK 434
            +++  N L+  +P    +L  +   N   N L       L+NL  L  +  + N+L   
Sbjct: 157 IIDVDNNSLK-KLPDLPPSLEFIAAGN---NQLE--ELPELQNLPFLTAIYADNNSLK-- 208

Query: 435 VYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494
             +      +L  +    N    E     +N P L T     N +  ++P        L+
Sbjct: 209 --KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLE 260

Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL--------------TE 540
            L++  N++  ++P     L  L+      + LS  +P  L  L                
Sbjct: 261 ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPS 318

Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG 600
           L+ L++S NKL   +P        L  L  S N  + ++P   E   +L +L + YN L 
Sbjct: 319 LEELNVSNNKLIE-LPALPPR---LERLIASFNH-LAEVP---ELPQNLKQLHVEYNPL- 369

Query: 601 KEMPFQICNMK----------------SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644
           +E P    +++                +L++L++  N L    P   +   ++  + ++ 
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP---DIPESVEDLRMNS 425

Query: 645 NELQGPIPNS 654
             +  P   +
Sbjct: 426 ERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (282), Expect = 2e-26
 Identities = 70/346 (20%), Positives = 121/346 (34%), Gaps = 50/346 (14%)

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSI 373
           FI P   +   L     H + L   +P    N+ +    Y   + +    P   G  + +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 374 FELELCTNRLRG------------GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
               L     R              +P    +L  LV      N L+  +P+  ++L SL
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASC---NSLT-ELPELPQSLKSL 116

Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
                N   LS          P L +L +S N          +N   L    V  N++  
Sbjct: 117 LVDNNNLKALS-------DLPPLLEYLGVSNNQLEKLPEL--QNSSFLKIIDVDNNSLK- 166

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
            +P        L+ +   +N +  E+P +L  L  L  +    N L   +P    S   L
Sbjct: 167 KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS---L 217

Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK 601
           + +    N L       + NL  L  +   NN  ++ +P   +    L  L++  N+L  
Sbjct: 218 ESIVAGNNILEE--LPELQNLPFLTTIYADNNL-LKTLP---DLPPSLEALNVRDNYL-T 270

Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
           ++P    ++  L+      + LS   P       NL +++ S NE+
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 4e-16
 Identities = 46/248 (18%), Positives = 81/248 (32%), Gaps = 41/248 (16%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
             + P L  +    N +  T+P    +L   + L++ +N LT  +P     L  L     
Sbjct: 233 LQNLPFLTTIYADNN-LLKTLPDLPPSL---EALNVRDNYLTD-LPELPQSLTFLDVSEN 287

Query: 163 DVNQLHGPIPQEIGQLSLIN--------------ELALCHNNLYGPIPPSLGNLSNLANF 208
             + L   +P  +  L+  +              EL + +N L   +P     L  L   
Sbjct: 288 IFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL--- 342

Query: 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP 268
             + N L   +P +  NLK    L +  N L    P    ++ +L       NS    +P
Sbjct: 343 IASFNHL-AEVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVP 392

Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
            +  NL+ L    +  N L    P    ++  L    + S  +             L   
Sbjct: 393 ELPQNLKQL---HVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDD 445

Query: 329 GLHINQLN 336
               +  +
Sbjct: 446 VFEHHHHH 453

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  157 bits (399), Expect = 5e-43
 Identities = 54/324 (16%), Positives = 110/324 (33%), Gaps = 21/324 (6%)

Query: 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
             +L    +         +    +  + D               + N  +        L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 169 GPIPQEIGQLSLIN--ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226
                 +   +      L L    L    P     LS+L +  ++   L   +P  +   
Sbjct: 70  A-TADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN---------LESL 277
             + TL L++N L  ++P S+ +L+ L  L + +      +P  + +         L +L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG 337
             L L    +  S+P S+ NL +L  + + ++ LS+ + P + +L  L  L L       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL 397
             P   G  + L+ L L +      +P +I  L  + +L+L        +P  I  L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 398 VLVNMCENHLSGPIPKSLRNLTSL 421
            ++ +  +  +           + 
Sbjct: 304 CIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  153 bits (389), Expect = 1e-41
 Identities = 54/320 (16%), Positives = 102/320 (31%), Gaps = 28/320 (8%)

Query: 77  SCNQAERIISI--NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNI--VFGTIPPQVGNLS- 131
                     +             +  +     +  +  +              + + + 
Sbjct: 21  GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQ 80

Query: 132 -KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNN 190
                L+L +  L    P +   L+ L+ +  D   L   +P  + Q + +  L L  N 
Sbjct: 81  PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNP 138

Query: 191 LYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNL 250
           L   +P S+ +L+ L    +        +P  L +                        L
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGL 182

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
            NL  L L    +   +P+ I NL++L  L +  + LS ++  ++ +L  L  + L   +
Sbjct: 183 VNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240

Query: 311 LSSFIPPILGNLKSLSALGL-HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369
                PPI G    L  L L   + L   +P  I  L+ L  L L        +P  I  
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 370 LKSIFELELCTNRLRGGIPH 389
           L +   + +  +       H
Sbjct: 300 LPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 6e-39
 Identities = 64/386 (16%), Positives = 118/386 (30%), Gaps = 75/386 (19%)

Query: 241 GSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS 300
           GS      + S    LY   ++   P   V+   +     D +    +        N ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 301 LTVMSLFSNSLSSFIPPILGNLKS--LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358
             + +    +L +    +L +       AL L    L    P     LS+L+ + +   G
Sbjct: 58  PQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 359 FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNL 418
               +P+ +     +  L L  N LR  +P SI +L                        
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLN----------------------- 150

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
                                     L  L +                 +L      + +
Sbjct: 151 -------------------------RLRELSIRACP-------------ELTELPEPLAS 172

Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
                  E      LQ L +    I   +P  +A L +L  L +  + LS  +   +  L
Sbjct: 173 TD--ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
            +L+ LDL         P   G    L+ L L +   +  +P+++ +L  L KLDL    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLS 624
               +P  I  + +   + +  +  +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  144 bits (365), Expect = 2e-38
 Identities = 64/355 (18%), Positives = 120/355 (33%), Gaps = 45/355 (12%)

Query: 196 PPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
                + S   N Y   +        VL   +     D ++        +   N +N  I
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQI 60

Query: 256 LYLYSNSLSGPIPSVIGNL--ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313
                 +L      ++ +      + L+L    L    P     LS L  M++ +  L  
Sbjct: 61  ETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG----- 368
            +P  +     L  L L  N L   +P+SI +L+ LR L +        +PE +      
Sbjct: 119 -LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 369 ----YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
                L ++  L L    +R  +P SI NL  L  + +  + LS  +  ++ +L  LE +
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234

Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIP 484
                         FG    L  L L   +                       N+  ++P
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCS-----------------------NLL-TLP 270

Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
           L+I    +L+ LD+     +  +P  +A+L +   +++  +  +        +  
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (334), Expect = 3e-34
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 13/224 (5%)

Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
           HL H+ +        +P  +   + L+ L L  N L   +P  I  LN+LR L       
Sbjct: 105 HLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 168 HGPIPQEIGQLSLIN---------ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS 218
              +P+ +                 L L    +   +P S+ NL NL +  + N+ L  +
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL-SA 220

Query: 219 IPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL 278
           +   + +L  +  LDL       + P   G  + L  L L   S    +P  I  L  L 
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNL 322
           +LDL        +P  +  L +  ++ +  +  +          
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 2e-31
 Identities = 58/368 (15%), Positives = 107/368 (29%), Gaps = 75/368 (20%)

Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN 348
           GS      + S    +    ++       +L   +       +             N +N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 349 LRLLYLYNNGFYGFVPEEIGYLKSI--FELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
            ++             + +          LEL +  L    P     L+ L  + +    
Sbjct: 58  PQIETRTGRALKAT-ADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           L   +P +++    LE                         L L++N             
Sbjct: 116 LME-LPDTMQQFAGLET------------------------LTLARNPL----------- 139

Query: 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ 526
                          ++P  I    +L+ L I +   + E+P  LA   +          
Sbjct: 140 --------------RALPASIASLNRLRELSIRACPELTELPEPLASTDA---------- 175

Query: 527 LSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKL 586
                  E   L  LQ L L    +RS +P SI NL  L+ L + N+  +  +   +  L
Sbjct: 176 -----SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSP-LSALGPAIHHL 228

Query: 587 IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646
             L +LDL      +  P        L++L L   +    +P     +  L  +D+    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 647 LQGPIPNS 654
               +P+ 
Sbjct: 289 NLSRLPSL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  159 bits (403), Expect = 2e-41
 Identities = 77/340 (22%), Positives = 125/340 (36%), Gaps = 44/340 (12%)

Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
            +    L++G + LT  +P  +     + +L    N L   +P    +L     L +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELR---TLEVSGN 91

Query: 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
            L   +P     L  L+ F          +P +   L     L +  NQL+ S+P     
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLCK---LWIFGNQLT-SLPVLPPG 142

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
           L     L +  N L+  +P++   L     L    NQL+ S+P+    L  L+   +  N
Sbjct: 143 LQE---LSVSDNQLAS-LPALPSELCK---LWAYNNQLT-SLPMLPSGLQELS---VSDN 191

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369
            L+S +P +   L  L A    +  L    P+       L+ L +  N     +P     
Sbjct: 192 QLAS-LPTLPSELYKLWAYNNRLTSL----PALPS---GLKELIVSGNRL-TSLPVLPSE 242

Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
           LK   EL +  NRL   +P     L  L +     N L+  +P+SL +L+S   V    N
Sbjct: 243 LK---ELMVSGNRLT-SLPMLPSGLLSLSVYR---NQLTR-LPESLIHLSSETTVNLEGN 294

Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL 469
            LS +  +A     +          F    +   R    L
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  141 bits (357), Expect = 2e-35
 Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 37/254 (14%)

Query: 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFD 163
           +  P L  L +S N    ++P     L +L         L  +          L  L+  
Sbjct: 78  ALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIF 129

Query: 164 VNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVL 223
            NQL   +P     L    EL++  N L   +P     L  L   +  NN L  S+P++ 
Sbjct: 130 GNQLTS-LPVLPPGLQ---ELSVSDNQL-ASLPALPSELCKL---WAYNNQL-TSLPMLP 180

Query: 224 GNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLS 283
             L+    L +S NQL+ S+P     L     L+ Y+N L+  +P++   L+    L +S
Sbjct: 181 SGLQE---LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLKE---LIVS 229

Query: 284 ENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343
            N+L+ S+P+    L  L    +  N L+S +P +   L SLS   ++ NQL   +P S+
Sbjct: 230 GNRLT-SLPVLPSELKEL---MVSGNRLTS-LPMLPSGLLSLS---VYRNQLT-RLPESL 280

Query: 344 GNLSNLRLLYLYNN 357
            +LS+   + L  N
Sbjct: 281 IHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (336), Expect = 1e-32
 Identities = 69/394 (17%), Positives = 132/394 (33%), Gaps = 92/394 (23%)

Query: 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
               + L++ ++ L+ ++P  L    ++  L +  N+L+  +P++   L +L   ++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPELRTL---EVSGN 91

Query: 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGN 345
           QL+ S+P+    L  L++ S     L    P +   L  L   G  +  L    P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGNQLTSL----PVLPPG 142

Query: 346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCEN 405
           L  L    + +N     +P     L     L    N+L   +P     L EL   ++ +N
Sbjct: 143 LQEL---SVSDNQL-ASLPALPSELCK---LWAYNNQLTS-LPMLPSGLQEL---SVSDN 191

Query: 406 HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRN 465
            L+  +P     L  L                                            
Sbjct: 192 QLAS-LPTLPSELYKLW------------------------------------------- 207

Query: 466 FPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
                      N ++ S+P        L+ L +S N +   +PV  ++L  L    +S N
Sbjct: 208 --------AYNNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLPSELKELM---VSGN 251

Query: 526 QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK 585
           +L+  +P     L  L    +  N+L   +P+S+ +L     +NL  N   ++    + +
Sbjct: 252 RLTS-LPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 586 LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
           +                        ++L      
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 2e-28
 Identities = 66/254 (25%), Positives = 99/254 (38%), Gaps = 32/254 (12%)

Query: 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ 166
             L  L +  N    ++P     L   Q L + +NQL   +P       +L  L+   NQ
Sbjct: 121 SGLCKLWIFGN-QLTSLPVLPPGL---QELSVSDNQLA-SLPALPS---ELCKLWAYNNQ 172

Query: 167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226
           L   +P     L    EL++  N L   +P     L  L   +  NN L  S+P +   L
Sbjct: 173 LTS-LPMLPSGL---QELSVSDNQLAS-LPTLPSELYKL---WAYNNRL-TSLPALPSGL 223

Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
           K    L +S N+L+ S+P     L  L    +  N L+  +P +   L SL    +  NQ
Sbjct: 224 KE---LIVSGNRLT-SLPVLPSELKEL---MVSGNRLTS-LPMLPSGLLSL---SVYRNQ 272

Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI---PSSI 343
           L+  +P SL +LSS T ++L  N LS      L  + S       I + +      P   
Sbjct: 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 344 GNLSNLRLLYLYNN 357
             L      +L   
Sbjct: 332 RALHLAAADWLVPA 345

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (300), Expect = 3e-28
 Identities = 63/363 (17%), Positives = 118/363 (32%), Gaps = 68/363 (18%)

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
                 + S  + +    +     +   V+++  + L++    +  ++ +L    +  N 
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLV---IPDNN 72

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
           L   +P+    L     L +  N     +P     L  +         L    P     L
Sbjct: 73  LT-SLPALPPELRT---LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGL 123

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
            +L +     N L+  +P     L  L     + N L+  +         L  L    N 
Sbjct: 124 CKLWIFG---NQLTS-LPVLPPGLQELS---VSDNQLA-SLPALPS---ELCKLWAYNNQ 172

Query: 455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL 514
                                      S+P+       LQ L +S N +   +P   ++L
Sbjct: 173 L-------------------------TSLPMLPS---GLQELSVSDNQLA-SLPTLPSEL 203

Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
           + L      L  L    P     L E   L +S N+L S +P        L+ L +S N+
Sbjct: 204 YKLWAYNNRLTSL----PALPSGLKE---LIVSGNRLTS-LPVLPSE---LKELMVSGNR 252

Query: 575 FIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634
            +  +P+    L+    L +  N L   +P  + ++ S   +NL  N LS    +    +
Sbjct: 253 -LTSLPMLPSGLLS---LSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

Query: 635 HNL 637
            + 
Sbjct: 308 TSA 310

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (395), Expect = 4e-41
 Identities = 62/474 (13%), Positives = 140/474 (29%), Gaps = 38/474 (8%)

Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC 187
            N ++ +   + ++ L   +         ++ L    N L      ++   + +  L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL 247
            N LY      L +LS L    LNNN + +     L    SI TL  + N +S     S 
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSC 116

Query: 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSL 306
                   +YL +N ++       G    +  LDL  N++   +      +  +L  ++L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE 366
             N +             L  L L  N+L   +     + + +  + L NN     + + 
Sbjct: 177 QYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKA 232

Query: 367 IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF 426
           + + +++   +L  N    G            +  + +  +     ++    T      +
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
                         +   L  L   ++                   +    + +  +  E
Sbjct: 292 GAYCCE---DLPAPFADRLIALKRKEHA-----------------LLSGQGSETERLECE 331

Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
                + + +D         I     +  +   L      L   +     +  EL     
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

Query: 547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLIHLSKLDLSYNFL 599
            A      +  +      L+ L     ++ +  +  +  +   +   D+  +  
Sbjct: 392 QAVGQIE-LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  148 bits (375), Expect = 2e-38
 Identities = 66/387 (17%), Positives = 120/387 (31%), Gaps = 21/387 (5%)

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
            ++   L          S  ++  L+LS N +       +   +KL+ L+L +N L    
Sbjct: 16  KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET- 73

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
             ++  L+ LR+L  + N +     QE+     I  L   +NN+   +  S        N
Sbjct: 74  -LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCS--RGQGKKN 124

Query: 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGP 266
            YL NN +     L  G    +  LDL  N++   +      +   L  L L  N +   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLS 326
           +   +     L  LDLS N+L+  +     + + +T +SL +N L   I   L   ++L 
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

Query: 327 ALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG 386
              L  N  +           N R+  +          +                     
Sbjct: 241 HFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 387 IPHSIGNLTELVLVNMCENHLSG----PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442
                  L  L           G     +     N      +   +      + +     
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKL 469
                L+  +     ++S   R   +L
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (371), Expect = 6e-38
 Identities = 63/457 (13%), Positives = 129/457 (28%), Gaps = 47/457 (10%)

Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
           +I  +  N        ++ + L  ++     +  N+  L L  N LS    + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG 337
             L+LS N L  ++ +   +LS+L  + L +N +       L    S+  L    N ++ 
Sbjct: 61  ELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG-GIPHSIGNLTE 396
           V   S       + +YL NN        + G    +  L+L  N +          +   
Sbjct: 114 V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY 456
           L  +N+  N +   +   +     L+ +  + N L+  +   F     +T++ L  N   
Sbjct: 171 LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL- 226

Query: 457 GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFS 516
                                     I   +  S  L+  D+  N              +
Sbjct: 227 ------------------------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKN 261

Query: 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLS----N 572
                ++   +           T        A             L+ L+    +     
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
               +++  E E      ++D         +       ++   L      L   +     
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 633 GMHNLSHI---DISYNELQGPIPNSTTFKDARMEGNK 666
               L       +   ELQ      +  +  R    +
Sbjct: 382 AHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR 418

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  145 bits (368), Expect = 2e-37
 Identities = 62/461 (13%), Positives = 138/461 (29%), Gaps = 20/461 (4%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           I +     +      +  ++L   +     +  N+    L+ N L       L     + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
            L+LS N L  ++     +LS L  L L +N +       +    S+  L  + N +S  
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR- 113

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNL 349
             +S         + L +N ++       G    +  L L +N+++ V       +   L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
             L L  N  Y  V  ++     +  L+L +N+L   +     +   +  +++  N L  
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 410 PIPKSLRNLTSLERVRFNQNNLS-GKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFP- 467
            I K+LR   +LE      N    G + + F  +  +  +           +      P 
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 468 --KLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
               G +         +  L   +  +  +L    +     +  +        ++     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKE 346

Query: 526 QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK 585
           Q    +            L+     L   +        +L          I+      E+
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 586 LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF 626
                   +   +    +  Q     ++   ++  +  +  
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 5e-17
 Identities = 32/300 (10%), Positives = 71/300 (23%), Gaps = 7/300 (2%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
               F  L  L+LS N     + P+  + + +  + L NN+L  +I   +     L    
Sbjct: 186 GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL 221
              N  H                 +    +      +    +     +       D    
Sbjct: 244 LRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 222 VLGNLKSISTLDLSKNQLSGS----IPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
               L ++   + +     GS    +     N +    +          I  V    ++ 
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAK 362

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG 337
           + L+  +  L   +       + L      +                     +       
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL 397
            +       + +R   +Y +       E     K   E +L        +   +     L
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  152 bits (386), Expect = 1e-39
 Identities = 92/469 (19%), Positives = 166/469 (35%), Gaps = 17/469 (3%)

Query: 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS 240
              L +  N +       + +LS L    +++N +      V    + +  LDLS N+L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 241 GSIPFSLGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLS 299
             I        NL  L L  N+  + PI    GN+  L  L LS   L  S  + + +L+
Sbjct: 83  -KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
              V+ +   +      P    L+  +   LHI          I ++S   +  L  +  
Sbjct: 140 ISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
              + +           +L TN     +  +    T    + +    L      ++    
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQLVWHTTVWYF- 252

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
           S+  V+            +      L+   +  + F    S+ +  F  +     +++  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS--GGMPFELGS 537
                L   +      LD S+N +   +      L  L  LIL +NQL     +      
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 538 LTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
           +  LQ LD+S N +     K        L  LN+S+N     I   +     +  LDL  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           N + K +P Q+  +++L++LN+  N L       F+ + +L  I +  N
Sbjct: 431 NKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  151 bits (382), Expect = 4e-39
 Identities = 83/432 (19%), Positives = 167/432 (38%), Gaps = 28/432 (6%)

Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
           +  + L++S+N +S      + +LS L IL +  N +     SV    + L  LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIGN 345
           L     IS     +L  + L  N+  +  I    GN+  L  LGL    L       I +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCEN 405
           L+  ++L +    +     E+   L+      L          H I +++   + N+  +
Sbjct: 138 LNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 406 HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRN 465
           +        ++ +    +  +  + L+         +  L  ++ + N+F   +   W  
Sbjct: 196 N--------IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 466 FPKLGTFIVSMNNISGSIPLEIGESF-----KLQVLDISSNHIVGEIPVQLAKLFSLNKL 520
              +  F +S   + G +     +        L +  + S+              ++N  
Sbjct: 248 T--VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP 580
             +++            ++   +LD S N L   + ++ G+L +L  L L  NQ ++++ 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELS 364

Query: 581 IEVE---KLIHLSKLDLSYNFLGKEMPFQIC-NMKSLEKLNLCHNNLSGFIPRCFEGMHN 636
              E   ++  L +LD+S N +  +     C   KSL  LN+  N L+  I RC      
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422

Query: 637 LSHIDISYNELQ 648
           +  +D+  N+++
Sbjct: 423 IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  145 bits (368), Expect = 2e-37
 Identities = 91/479 (18%), Positives = 176/479 (36%), Gaps = 33/479 (6%)

Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNN 190
            K   L++  N ++ +   +I  L++LR L    N++             +  L L HN 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 191 LYGPIPPSLGNLSNLANFYLNNNLLFDSIPL--VLGNLKSISTLDLSKNQLSGSIPFSLG 248
           L         NL +L    L+ N   D++P+    GN+  +  L LS   L  S    + 
Sbjct: 81  LVKISCHPTVNLKHL---DLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           +L+   +L +   +           L+      L     +      + ++S  TV +L  
Sbjct: 137 HLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368
           +++   +     +        L  N     +  +    +    + +              
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL----------V 244

Query: 369 YLKSIFELELCTNRLRG-----GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLER 423
           +  +++   +   +L+G        +S  +L  L +  +  +    P        +++  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 424 VRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI 483
             F  +                  LD S N     +  N  +  +L T I+ MN +   +
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 484 PLEIG---ESFKLQVLDISSNHI-VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
                   +   LQ LDIS N +   E     +   SL  L +S N L+  +   L    
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PP 421

Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            ++ LDL +NK++S IPK +  L  L+ LN+++NQ ++ +P  + ++L  L K+ L  N
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (331), Expect = 2e-32
 Identities = 78/483 (16%), Positives = 163/483 (33%), Gaps = 41/483 (8%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L      S   L  L +S N     +   V     +L++LDL +N+L  +         
Sbjct: 35  ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKIS---CHPTV 90

Query: 156 QLRSLYFDVNQLHG-PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
            L+ L    N     PI +E G +S +  L L   +L       + +L+      +    
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
             +        L+  +T  L     +      + ++S   +  L  +++   +     + 
Sbjct: 151 YGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
              +   L  N    ++ ++    +  + + +      + +        S+S + L    
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF-----SISNVKLQGQL 263

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
                  S  +L  L +  + ++ F            ++       +  R         +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS--GKVYEAFGYHPNLTFLDLSQ 452
           +  + ++   N L+  + ++  +LT LE +    N L    K+ E      +L  LD+SQ
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA 512
           N+          +                           L  L++SSN +   I   L 
Sbjct: 384 NSV--SYDEKKGDCSWTK---------------------SLLSLNMSSNILTDTIFRCL- 419

Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
               +  L L  N++   +P ++  L  LQ L++++N+L+S        L  L+ + L  
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 573 NQF 575
           N +
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 64/369 (17%), Positives = 120/369 (32%), Gaps = 29/369 (7%)

Query: 88  NLSSMGLNGT-LQEFAFSSFPHLVHLNLSFNIVFGTIPP-QVGNLSKLQHLDLGNNQLTG 145
            L  +GL+ T L++ +     HL    +   +            L       L     T 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 146 VIPPEIG-----------HLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGP 194
                I              N    L  +       I  ++     ++ L L +      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 195 IPPSLGNL---SNLANFYLNNNLL-----FDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
               +  L   + +  F ++N  L     F        +LK++S   +  +       + 
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
               SN+ I     +            +   L LD S N L+ ++  + G+L+ L  + L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 307 FSNSLSSFIPPILG---NLKSLSALGLHINQLNGVIPSSI-GNLSNLRLLYLYNNGFYGF 362
             N L   +  I      +KSL  L +  N ++            +L  L + +N     
Sbjct: 356 QMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
           +   +     I  L+L +N+++  IP  +  L  L  +N+  N L          LTSL+
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 423 RVRFNQNNL 431
           ++  + N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 64/351 (18%), Positives = 119/351 (33%), Gaps = 21/351 (5%)

Query: 4   SILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVS-S 62
            I ++ I  +LL L  +       E L     +       ++    + L  +  T  +  
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 63  YSKTKINPCAWV---------GISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLN 113
            S  K                 +  N     +++N      N  ++         + + +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 114 LS-----FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
           +S       + F        +L  L    + ++             + +    F V+   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLL--FDSIPLVLGNL 226
                   ++S    L   +N L   +  + G+L+ L    L  N L     I  +   +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 227 KSISTLDLSKNQLSGSIP-FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
           KS+  LD+S+N +S            +L  L + SN L+  I   +     +  LDL  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
           ++  SIP  +  L +L  +++ SN L S    I   L SL  + LH N  +
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (374), Expect = 6e-39
 Identities = 74/359 (20%), Positives = 132/359 (36%), Gaps = 18/359 (5%)

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
            I  +L        + +   +   +       L +   +    + +  +  + + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
            LL L +            Y  +I +L +  N +R   PH   N+  L ++ +  N LS 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL 469
                  N   L  +  + NNL     + F    +L  L LS N        +    P L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---THVDLSLIPSL 188

Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
               VS N +S      +     ++ LD S N I   +   +     L  L L  N L+ 
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD 240

Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589
                L +   L  +DLS N+L   +      + +L  L +SNN+ +  + +  + +  L
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTL 297

Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
             LDLS+N L   +         LE L L HN++   +       H L ++ +S+N+  
Sbjct: 298 KVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (354), Expect = 3e-36
 Identities = 68/405 (16%), Positives = 131/405 (32%), Gaps = 66/405 (16%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG 254
           I  +L       + +++              L +   +    + +       L +   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314
           +L L    +            ++ +L +  N +    P    N+  LTV+ L  N LSS 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF 374
              I  N   L+ L +  N L  +   +    ++L+ L L +N        ++  + S+F
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189

Query: 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK 434
              +  N L                              +L    ++E +  + N+++  
Sbjct: 190 HANVSYNLL-----------------------------STLAIPIAVEELDASHNSINVV 220

Query: 435 VYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494
                     LT L L  NN                       + +  +         L 
Sbjct: 221 RGPVN---VELTILKLQHNNL---------------------TDTAWLLNYP-----GLV 251

Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554
            +D+S N +   +     K+  L +L +S N+L   +      +  L+ LDLS N L   
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH- 309

Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           + ++     +L  L L +N  I  + +       L  L LS+N  
Sbjct: 310 VERNQPQFDRLENLYLDHNS-IVTLKLST--HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (345), Expect = 4e-35
 Identities = 61/353 (17%), Positives = 122/353 (34%), Gaps = 18/353 (5%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
                    +++           +   L+  + +   N+ +  +    +    Q+  L  
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
           +  Q+             I +L +  N +    P    N+  L    L  N L      +
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
             N   ++TL +S N L      +    ++L  L L SN L+  +   +  + SL   ++
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANV 193

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
           S N LS     +L    ++  +    NS++    P+   L  L    L  N L     + 
Sbjct: 194 SYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT--AW 243

Query: 343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNM 402
           + N   L  + L  N     +      ++ +  L +  NRL   +      +  L ++++
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
             NHL   + ++      LE +  + N++             L  L LS N++
Sbjct: 303 SHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 5e-32
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 18/358 (5%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           I   +    +  ++ +               L+N       N+ +      +L + + + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
            L+L+  Q+     ++      +  LY+  N++    P V  N+  L  L L  N LS  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
                 N   LT +S+ +N+L            SL  L L  N+L  V    +  + +L 
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189

Query: 351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
              +  N         +    ++ EL+   N +          LT L L +   N+L+  
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH---NNLTD- 240

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
               L N   L  V  + N L   +Y  F     L  L +S N     ++   +  P L 
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLK 298

Query: 471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528
              +S N++   +     +  +L+ L +  N IV    ++L+   +L  L LS N   
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 3e-30
 Identities = 70/357 (19%), Positives = 123/357 (34%), Gaps = 18/357 (5%)

Query: 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLA 206
           I   + +      ++ D+         E   L+    +   ++ +       L +   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266
              LN+  + +          +I  L +  N +    P    N+  L +L L  N LS  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLS 326
              +  N   L  L +S N L      +    +SL  + L SN L+  +      + SL 
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL--SLIPSLF 189

Query: 327 ALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG 386
              +  N L     S++     +  L   +N     V   +     +  L+L  N L   
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD- 240

Query: 387 IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLT 446
               + N   LV V++  N L   +      +  LER+  + N L   +       P L 
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 447 FLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
            LDLS N+    +  N   F +L    +  N+I     L++     L+ L +S N  
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 5e-30
 Identities = 64/338 (18%), Positives = 118/338 (34%), Gaps = 24/338 (7%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L      SF  +  LNL+       I          +Q L +G N +  + P    ++ 
Sbjct: 59  KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
            L  L  + N L   +P+ I      +  L++ +NNL      +    ++L N  L++N 
Sbjct: 118 LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
           L   +   L  + S+   ++S N LS     +L     +  L    NS++  +       
Sbjct: 177 L-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG--PVN 225

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
             L  L L  N L+      L N   L  + L  N L   +      ++ L  L +  N+
Sbjct: 226 VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
           L   +      +  L++L L +N     V         +  L L  N +   +   +   
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 338

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS 432
             L  + +  N       ++L    ++ R   +  +  
Sbjct: 339 HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 4e-24
 Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 15/290 (5%)

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
           Y  +   + Y    +++ +               L    +V    + +       L +  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
            +E +  N   +      AF Y   +  L +  N         ++N P L   ++  N++
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 480 SGSIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
           S S+P  I  +  KL  L +S+N++            SL  L LS N+L+     +L  +
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLI 185

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
             L + ++S N L      ++   + +  L+ S+N  I  +   V   + L+ L L +N 
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNN 237

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L         N   L +++L +N L   +   F  M  L  + IS N L 
Sbjct: 238 LTDTAWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  139 bits (352), Expect = 1e-36
 Identities = 55/328 (16%), Positives = 107/328 (32%), Gaps = 21/328 (6%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
           N ++ +   + ++ L   +         ++ L    N L      ++   + +  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N LY      L +LS L    LNNN + +     L    SI TL  + N +S     S  
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCS 117

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLF 307
                  +YL +N ++       G    +  LDL  N++   +      +  +L  ++L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 308 SNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI 367
            N +             L  L L  N+L   +     + + +  + L NN     + + +
Sbjct: 178 YNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKAL 233

Query: 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
            + +++   +L  N          G L +    N     ++    K L      E     
Sbjct: 234 RFSQNLEHFDLRGNGF------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
             +      E          + L  ++ 
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (338), Expect = 7e-35
 Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 16/264 (6%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQ 156
                   S  ++  L+LS N +       +   +KL+ L+L +N L      ++  L+ 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLST 81

Query: 157 LRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLF 216
           LR+L  + N +     QE+     I  L   +NN+   +  S        N YL NN + 
Sbjct: 82  LRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCS--RGQGKKNIYLANNKIT 133

Query: 217 DSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
               L  G    +  LDL  N++   +      +   L  L L  N +   +   +    
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFA 191

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
            L  LDLS N+L+  +     + + +T +SL +N L   I   L   ++L    L  N  
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGF 359
           +           N R+  +     
Sbjct: 250 HC-GTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 7e-33
 Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 15/264 (5%)

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
            I     N     +  + ++ L   +    ++  +++ +  + N LS            L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG 505
             L+LS N  Y  +     +   L T  ++ N +      E+     ++ L  ++N+I  
Sbjct: 61  ELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS-WIPKSIGNLLK 564
              V  ++      + L+ N+++     + G  + +QYLDL  N++ +    +   +   
Sbjct: 114 ---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           L +LNL  N  I  +  +V     L  LDLS N L   M  +  +   +  ++L +N L 
Sbjct: 171 LEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227

Query: 625 GFIPRCFEGMHNLSHIDISYNELQ 648
             I +      NL H D+  N   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  126 bits (318), Expect = 4e-32
 Identities = 55/335 (16%), Positives = 113/335 (33%), Gaps = 23/335 (6%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           I +     +      +  ++L   +     +  N+    L+ N L       L     + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
            L+LS N L  ++     +LS L  L L +N +       +    S+  L  + N +S  
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR- 113

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNL 349
             +S         + L +N ++       G    +  L L +N+++ V       +   L
Sbjct: 114 --VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
             L L  N  Y  V  ++     +  L+L +N+L   +     +   +  +++  N L  
Sbjct: 172 EHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 410 PIPKSLRNLTSLERVRFNQNNLS-GKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468
            I K+LR   +LE      N    G + + F  +  +  +           +      P 
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
           L                ++   F  +++ +  +H 
Sbjct: 288 L----GHYGAYCCE---DLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  126 bits (318), Expect = 4e-32
 Identities = 58/335 (17%), Positives = 118/335 (35%), Gaps = 21/335 (6%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG 254
           I     N +      + ++ L  ++  +  +  ++  LDLS N LS      L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314
           +L L SN L   +   + +L +L  LDL+ N +       L    S+  +   +N++S  
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF-VPEEIGYLKSI 373
                   K++    L  N++  +     G  S ++ L L  N        E      ++
Sbjct: 115 SCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
             L L  N +   +   +    +L  +++  N L+  +    ++   +  +    N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 434 KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL 493
            + +A  +  NL   DL  N F+     ++  F K              +  +  E   +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528
             L     +   ++P      F+   + L  +   
Sbjct: 286 PTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 5e-31
 Identities = 53/305 (17%), Positives = 106/305 (34%), Gaps = 16/305 (5%)

Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
           +I  +  N        ++ + L  ++     +  N+  L L  N LS    + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG 337
             L+LS N L       L +LS+L  + L +N +       L    S+  L    N ++ 
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG-GIPHSIGNLTE 396
           V   S       + +YL NN        + G    +  L+L  N +          +   
Sbjct: 114 V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 397 LVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY 456
           L  +N+  N +   +   +     L+ +  + N L+  +   F     +T++ L  N   
Sbjct: 171 LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL- 226

Query: 457 GEISFNWRNFPKLGTFIVSMNNIS-GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515
             I    R    L  F +  N    G++     ++ ++Q +   +   +     +   + 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 516 SLNKL 520
           +L   
Sbjct: 287 TLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 9/198 (4%)

Query: 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ 166
           P +  L+ + N     +          +++ L NN++T +   + G  ++++ L   +N+
Sbjct: 99  PSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 167 LHG-PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGN 225
           +      +       +  L L +N +Y  +   +   + L    L++N L   +     +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQS 212

Query: 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS-GPIPSVIGNLESLLQLDLSE 284
              ++ + L  N+L   I  +L    NL    L  N    G +       + +  +    
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 285 NQLSGSIPISLGNLSSLT 302
            +           + +L 
Sbjct: 272 VKKLTGQNEEECTVPTLG 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  140 bits (354), Expect = 1e-35
 Identities = 73/357 (20%), Positives = 134/357 (37%), Gaps = 13/357 (3%)

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
               +     +   ++P  +   +   ++ L  N + +       +   L  L L+ N +
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT 395
           + V P +  NL NLR L L +N            L ++ +L++  N++   + +   +L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
            L  + + +N L     ++   L SLE++   + NL+    EA  +   L  L L   N 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515
                ++++   +L    +S      ++         L  L I+  ++     + +  L 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
            L  L LS N +S      L  L  LQ + L   +L    P +   L  LR LN+S NQ 
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ- 307

Query: 576 IQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRC 630
           +  +   V   + +L  L L  N      P    C +  +        N +   P C
Sbjct: 308 LTTLEESVFHSVGNLETLILDSN------PLACDCRLLWV-FRRRWRLNFNRQQPTC 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (343), Expect = 3e-34
 Identities = 69/304 (22%), Positives = 121/304 (39%), Gaps = 5/304 (1%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNN 141
               ++L    +  TL +  F+SFPHL  L L+ NIV   + P    NL  L+ L L +N
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90

Query: 142 QLTGVIPPEI-GHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLG 200
           +L  +IP  +   L+ L  L    N++   +      L  +  L +  N+L      +  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 201 NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
            L++L    L    L       L +L  +  L L    ++    +S   L  L +L +  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
                 +        +L  L ++   L+    +++ +L  L  ++L  N +S+    +L 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
            L  L  + L   QL  V P +   L+ LR+L +  N            + ++  L L +
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 381 NRLR 384
           N L 
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 2e-32
 Identities = 73/390 (18%), Positives = 129/390 (33%), Gaps = 74/390 (18%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
           CH   +  +P  +   +      L  N +         +   +  L+L++N +S   P +
Sbjct: 18  CHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
             NL NL  L L SN L      V   L +L +LD+SEN++   +     +L +L  + +
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE 366
             N L          L SL  L L    L  +   ++ +L  L +L L +          
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH---------- 185

Query: 367 IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF 426
                                                  +++     S + L  L+ +  
Sbjct: 186 --------------------------------------LNINAIRDYSFKRLYRLKVLEI 207

Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
           +       +     Y  NLT L ++  N     +  +     L                 
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNL---TAVPYLAVRHLV---------------- 248

Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
                 L+ L++S N I       L +L  L ++ L   QL+   P+    L  L+ L++
Sbjct: 249 -----YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFI 576
           S N+L +       ++  L  L L +N   
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 3e-32
 Identities = 66/329 (20%), Positives = 127/329 (38%), Gaps = 28/329 (8%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164
                 L+L  N    T+      +   L+ L+L  N ++ V P    +L  LR+L    
Sbjct: 31  PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 165 NQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVL 223
           N+L   IP  +   LS + +L +  N +   +     +L NL +  + +N L        
Sbjct: 90  NRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 224 GNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLS 283
             L S+  L L K  L+     +L +L  L +L L   +++         L  L  L++S
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 284 ENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343
                 ++  +     +LT +S+   +L++     + +L  L  L L  N ++ +  S +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMC 403
             L  L+ + L                  +  +E          P++   L  L ++N+ 
Sbjct: 269 HELLRLQEIQLVGG--------------QLAVVE----------PYAFRGLNYLRVLNVS 304

Query: 404 ENHLSGPIPKSLRNLTSLERVRFNQNNLS 432
            N L+        ++ +LE +  + N L+
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (302), Expect = 6e-29
 Identities = 67/308 (21%), Positives = 127/308 (41%), Gaps = 15/308 (4%)

Query: 347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           +  R +  +   F   VPE I        L+L  NR++        +   L  + + EN 
Sbjct: 11  AQDRAVLCHRKRF-VAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           +S   P +  NL +L  +    N L       F    NLT LD+S+N     + + +++ 
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 467 PKLGTFIVSMNNISGSIPLEIGESF----KLQVLDISSNHIVGEIPVQ-LAKLFSLNKLI 521
             L +  V  N++   I      +F     L+ L +   ++   IP + L+ L  L  L 
Sbjct: 128 YNLKSLEVGDNDLV-YIS---HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 522 LSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
           L    ++    +    L  L+ L++S       +  +    L L  L++++   +  +P 
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPY 241

Query: 582 EV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
                L++L  L+LSYN +       +  +  L+++ L    L+   P  F G++ L  +
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 641 DISYNELQ 648
           ++S N+L 
Sbjct: 302 NVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 4/183 (2%)

Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPF 533
             N I      E      L+ L+++ N +   +       LF+L  L L  N+L      
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98

Query: 534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKL 592
               L+ L  LD+S NK+   +     +L  L+ L + +N  +  I       L  L +L
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQL 157

Query: 593 DLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652
            L    L       + ++  L  L L H N++      F+ ++ L  ++IS+      + 
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 653 NST 655
            + 
Sbjct: 218 PNC 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  136 bits (345), Expect = 1e-34
 Identities = 89/405 (21%), Positives = 152/405 (37%), Gaps = 37/405 (9%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS-VIGNLESLLQLDLSENQ 286
            ++ +DLS N ++     S   L +L  L +   +    I +     L SL+ L L  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 287 LSGSIPIS-LGNLSSLTVMSLFSNSLSSFIPP--ILGNLKSLSALGLHINQLNGVIPSSI 343
               +       L++L V++L   +L   +        L SL  L L  N +  + P+S 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 344 -GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNM 402
             N+    +L L  N       E++   +      L               L+ + L +M
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQDM 195

Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL-DLSQNNFYGEISF 461
            E  L      +    TS+  +  + N     + + F      T +  L  +N Y   S 
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQL-AKLFSLNKL 520
                        +  +        +  S  ++  D+S + I   +   + +    L +L
Sbjct: 256 FGHT---------NFKDPDNFTFKGLEAS-GVKTCDLSKSKI-FALLKSVFSHFTDLEQL 304

Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP 580
            L+ N+++         LT L  L+LS N L S   +   NL KL  L+LS N  I+ + 
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG 363

Query: 581 IEV-EKLIHLSKLDLSYNFLGKEMPFQI-CNMKSLEKLNLCHNNL 623
            +    L +L +L L  N L K +P  I   + SL+K+ L  N  
Sbjct: 364 DQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (305), Expect = 2e-29
 Identities = 70/400 (17%), Positives = 124/400 (31%), Gaps = 56/400 (14%)

Query: 86  SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLT 144
            ++LS   +   L E +FS    L  L +        I       LS L  L L  NQ  
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 145 GVIPPEI-GHLNQLRSLYFDVNQLHG-PIPQEI-GQLSLINELALCHNNLYGPIPPSL-G 200
             +       L  L  L      L G  +       L+ +  L L  NN+    P S   
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 201 NLSNLANFYLNNNLL----------FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNL 250
           N+       L  N +          F      L  L SI+  D+++  L      +    
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQL-------------DLSENQLSGSIPISLGN 297
           +++  L L  N     +     +  +  ++                          +   
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 298 L--SSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLY 355
           L  S +    L  + + + +  +  +   L  L L  N++N +  ++   L++L  L L 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 356 NNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL 415
            N           +L S          +   +  ++  L  L L     NH+     +S 
Sbjct: 332 QN-----------FLGS----------IDSRMFENLDKLEVLDLSY---NHIRALGDQSF 367

Query: 416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
             L +L+ +  + N L       F    +L  + L  N +
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (299), Expect = 9e-29
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 85/452 (18%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
           + ++DL  N +  +       L  L+ L  +       I                     
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-------------------- 71

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSI--PFSLGN 249
                +   LS+L    L+ N     +       L ++  L L++  L G++        
Sbjct: 72  ---NNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 250 LSNLGILYLYSNSLSGPIP-SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           L++L +L L  N++    P S   N+     LDL+ N++       L N        L  
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-- 185

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368
                        L S++   ++   L      +    +++  L L  NGF   + +   
Sbjct: 186 ------------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNL--TSLERVRF 426
              +  +++               + +  +  +    +   P   + + L  + ++    
Sbjct: 234 DAIAGTKIQSLIL-----------SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRN-FPKLGTFIVSMNNISGSIPL 485
           +++ +   +   F +  +L  L L+QN     I+    N F  L                
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNE----INKIDDNAFWGLT--------------- 323

Query: 486 EIGESFKLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
                  L  L++S N + G I  ++   L  L  L LS N +          L  L+ L
Sbjct: 324 ------HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 545 DLSANKLRSWIPKSI-GNLLKLRYLNLSNNQF 575
            L  N+L+S +P  I   L  L+ + L  N +
Sbjct: 377 ALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 51/262 (19%), Positives = 93/262 (35%), Gaps = 29/262 (11%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQV---GNLSKLQHLDLGNNQLTGVIPPEIG------ 152
            F +      L+L+FN    +I  +            L L +  L  +    +G      
Sbjct: 149 FFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 153 --HLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL-------------ALCHNNLYGPIPP 197
                 + +L    N     + +         ++             +  H N   P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 198 SLGNL--SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
           +   L  S +    L+ + +F  +  V  +   +  L L++N+++     +   L++L  
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSNSLSSF 314
           L L  N L      +  NL+ L  LDLS N +  ++   S   L +L  ++L +N L S 
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 315 IPPILGNLKSLSALGLHINQLN 336
              I   L SL  + LH N  +
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
             + Y+DLS N +      S   L  L++L +        I       L  L  L L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNL-SGFIPR-CFEGMHNLSHIDISYNELQ 648
              +        + +LE L L   NL    +    F+ + +L  + +  N ++
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (342), Expect = 1e-33
 Identities = 69/384 (17%), Positives = 136/384 (35%), Gaps = 42/384 (10%)

Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
           +  I   L        + +          F    L+N  I+   ++++     +++ +  
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
            +  L+L++ Q+      +     ++  + +  N++    P +  N+  L+ L L  N L
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT 395
           + +      N   L  L + NN       +      S+  L+L +NRL       I +L 
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
              +     N LS     +L    ++E +  + N+++            LT L L  NN 
Sbjct: 196 HANVSY---NLLS-----TLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL 244

Query: 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515
                                 + +  +         L  +D+S N +   +     K+ 
Sbjct: 245 ---------------------TDTAWLLNYP-----GLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
            L +L +S N+L   +      +  L+ LDLS N L   + ++     +L  L L +N  
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS- 335

Query: 576 IQKIPIEVEKLIHLSKLDLSYNFL 599
           I  + +       L  L LS+N  
Sbjct: 336 IVTLKLST--HHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 2e-32
 Identities = 62/347 (17%), Positives = 123/347 (35%), Gaps = 18/347 (5%)

Query: 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
              +++           +   L+  + +   N+ +  +    +    Q+  L  +  Q+ 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKS 228
                       I +L +  N +    P    N+  L    L  N L      +  N   
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           ++TL +S N L      +    ++L  L L SN L+  +   +  + SL   ++S N LS
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLS 205

Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN 348
                +L    ++  +    NS++    P+   L  L    L  N L     + + N   
Sbjct: 206 -----TLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT--AWLLNYPG 255

Query: 349 LRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408
           L  + L  N     +      ++ +  L +  NRL   +      +  L ++++  NHL 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
             + ++      LE +  + N++          H  L  L LS N++
Sbjct: 315 H-VERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (317), Expect = 2e-30
 Identities = 77/420 (18%), Positives = 138/420 (32%), Gaps = 43/420 (10%)

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
            Q R         +  I   +    +  ++ +               L+N       N+ 
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
           +      +L + + +  L+L+  Q+     ++      +  LY+  N++    P V  N+
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
             L  L L  N LS        N   LT +S+ +N+L            SL  L L  N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
           L  V    +  + +L    +  N         +    ++ EL+   N +          L
Sbjct: 183 LTHV---DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVEL 234

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
           T L L +   N+L+      L N   L  V  + N L   +Y  F     L  L +S N 
Sbjct: 235 TILKLQH---NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL 514
                                      ++ L       L+VLD+S NH++  +     + 
Sbjct: 290 L-------------------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR-SWIPKSIGNLLKLRYLNLSNN 573
             L  L L  N +      +L +   L+ L LS N    + +     N+ +    +   +
Sbjct: 324 DRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 2e-28
 Identities = 83/483 (17%), Positives = 158/483 (32%), Gaps = 24/483 (4%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L      SF  +  LNL+       I          +Q L +G N +  + P    ++ 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
            L  L  + N L   +P+ I      +  L++ +NNL      +    ++L N  L++N 
Sbjct: 124 LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
           L   +   L  + S+   ++S N LS     +L     +  L    NS++  +       
Sbjct: 183 L-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG--PVN 231

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
             L  L L  N L+      L N   L  + L  N L   +      ++ L  L +  N+
Sbjct: 232 VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
           L   +      +  L++L L +N     V         +  L L  N +   +   +   
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 344

Query: 395 TELVLVNMCENHLSG-PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
             L  + +  N      +    RN+        +Q+       E            L + 
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 454 NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAK 513
             Y  ++       +      + + I+    L    + +  V    +  +  E+    A+
Sbjct: 405 LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 514 LFSLNKLILSLNQLSGGMPFE-LGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
           +  L    +   QL  G+  E   +L   +       +    + K   +L + +   L  
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE 524

Query: 573 NQF 575
            Q 
Sbjct: 525 TQA 527

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  129 bits (325), Expect = 1e-31
 Identities = 94/516 (18%), Positives = 179/516 (34%), Gaps = 77/516 (14%)

Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC 187
               + + L L  N ++ +  P+I  L++LR L    N++                    
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------------------ 90

Query: 188 HNNLYGPIPPSL-GNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
                  +   +     +L    +++N L  +I      + S+  LDLS N     +P  
Sbjct: 91  -------LDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVC 139

Query: 247 --LGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTV 303
              GNL+ L  L L +       +  V     S + LDL    + G    SL    + TV
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTV 198

Query: 304 MSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGN----------LSNLRLLY 353
           + L  +  S F   +  ++ +L  L L   +LN      +            L N+ L +
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 354 LYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK 413
           +           +  + + +  L +    +   I       +E  L ++   H+   +  
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 414 SL-----RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468
                       +     + ++             + TFL+ +QN F   +        +
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528
           L T I+  N +  +       +  +  L+                         SLN L+
Sbjct: 379 LQTLILQRNGLK-NFFKVALMTKNMSSLETLDV---------------------SLNSLN 416

Query: 529 GGMPFELGSLTE-LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLI 587
                   +  E +  L+LS+N L   + + +    K++ L+L NN+ I  IP +V  L 
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR-IMSIPKDVTHLQ 473

Query: 588 HLSKLDLSYNFLGKEMPFQIC-NMKSLEKLNLCHNN 622
            L +L+++ N L K +P  +   + SL+ + L  N 
Sbjct: 474 ALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (319), Expect = 9e-31
 Identities = 84/482 (17%), Positives = 169/482 (35%), Gaps = 35/482 (7%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
             N     +P             L+ N + +     +  L  +  L LS N++  S+ F 
Sbjct: 38  YSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFH 94

Query: 247 L-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPIS--LGNLSSLTV 303
           +     +L  L +  N L   I      + SL  LDLS N     +P+    GNL+ LT 
Sbjct: 95  VFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTF 150

Query: 304 MSLFSNSLSSFIPPILGNLK-SLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF 362
           + L +          + +L  S   L L    + G    S+    N  +L+L  +    F
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLF 209

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN----- 417
             +    + ++  L+L   +L       +      +       +++    ++        
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 418 -----LTSLERVRFNQNNLSGKVYEAFGYH-----PNLTFLDLSQNNFYGEISFNWRNFP 467
                   +E +      ++ ++      +      +L    +    F       +  F 
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 468 KLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQL 527
           ++   ++S+++      +          L+ + N     +    + L  L  LIL  N L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 528 S--GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL-KLRYLNLSNNQFIQKIPIEVE 584
                +     +++ L+ LD+S N L S            +  LNLS+N     +     
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---R 446

Query: 585 KL-IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643
            L   +  LDL  N +   +P  + ++++L++LN+  N L       F+ + +L +I + 
Sbjct: 447 CLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 644 YN 645
            N
Sbjct: 506 DN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (317), Expect = 1e-30
 Identities = 89/441 (20%), Positives = 155/441 (35%), Gaps = 29/441 (6%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
             S +D S   L+  +P           L L  NS+S      I  L  L  L LS N++
Sbjct: 32  LESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 288 SGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGN 345
             S+   +      L  + +  N L + I      + SL  L L  N  + + +    GN
Sbjct: 89  R-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 346 LSNLRLLYLYNNGFYGFVPEEIGYLK-SIFELELCTNRLRGGIPHSI--GNLTELVLVNM 402
           L+ L  L L    F       + +L  S   L+L +  ++GG   S+   N T L LV  
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 403 CENHLSGPIPKSLRNLTSLE----RVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE 458
             +  S  +  S+  L  L+    ++                  P L  + L       +
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 459 ISFNWRNF---PKLGTFIVSMNNISGSIPLEIGESFK-----LQVLDISSNHIVGEIPVQ 510
            S     F     +    +    I+  I  E     +     L +  + +   +      
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
            +    +N  +LS++           S +   +L+ + N     + +    L +L+ L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 571 SNNQF--IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MKSLEKLNLCHNNLSGFI 627
             N      K+ +  + +  L  LD+S N L      + C   +S+  LNL  N L+G +
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 628 PRCFEGMHNLSHIDISYNELQ 648
            RC      +  +D+  N + 
Sbjct: 445 FRCL--PPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 8e-27
 Identities = 86/486 (17%), Positives = 167/486 (34%), Gaps = 47/486 (9%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L+    S    L  L LS N    ++   V      L++LD+ +N+L   I      + 
Sbjct: 66  ELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMA 121

Query: 156 QLRSLYFDVNQLHG-PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
            LR L    N     P+ +E G L+ +  L L            + +L          + 
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
                      + + + L L  +  S        +++ LG L L +  L+      +   
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
            S L    +   ++     +    S       +   +            ++  L +    
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL---------NIYNLTITERI 292

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
                  S   L +L + ++ N  F                           +      +
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKE---------------------ALYSVFAEM 331

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
              +L       +    P S  + T L    F QN  +  V++       L  L L +N 
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLN---FTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 455 F--YGEISFNWRNFPKLGTFIVSMNNI-SGSIPLEIGESFKLQVLDISSNHIVGEIPVQL 511
              + +++   +N   L T  VS+N++ S +       +  + VL++SSN + G +   L
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 512 AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNL 570
                +  L L  N++   +P ++  L  LQ L++++N+L+S +P  +   L  L+Y+ L
Sbjct: 449 PP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWL 504

Query: 571 SNNQFI 576
            +N + 
Sbjct: 505 HDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 97.2 bits (242), Expect = 3e-21
 Identities = 62/367 (16%), Positives = 120/367 (32%), Gaps = 29/367 (7%)

Query: 88  NLSSMGLNGT-LQEFAFSSFPHL----VHLNLSFNIVFGTIPPQVGNL-SKLQHLDLGNN 141
            L+ +GL+    ++       HL    + L+L    + G     +    + + HL    N
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 142 QL------TGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI 195
            L        V       L+ ++    +  +L   +  E+ +   +  + L H       
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKC 265

Query: 196 PPSLGNLS--------NLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL 247
              L            N+ N  +   +  +        LKS+    +       S     
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLF 307
              + + I  L  +           +  S   L+ ++N  + S+      L  L  + L 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 308 SNSLSSFIPPILGNLKSLSALGLHINQLN----GVIPSSIGNLSNLRLLYLYNNGFYGFV 363
            N L +    +    K++S+L      LN         +     ++ +L L +N   G V
Sbjct: 386 RNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 364 PEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLER 423
              +     +  L+L  NR+   IP  + +L  L  +N+  N L          LTSL+ 
Sbjct: 445 FRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501

Query: 424 VRFNQNN 430
           +  + N 
Sbjct: 502 IWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 8/216 (3%)

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVLDISSN 501
           P    L LSQN+       +     +L    +S N I  S+   +      L+ LD+S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQL-SGGMPFELGSLTELQYLDLSANKLRSWIPKSIG 560
            +   I      + SL  L LS N      +  E G+LT+L +L LSA K R      + 
Sbjct: 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 561 NL-LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
           +L L    L+L +   I+    E  ++ + + L L ++           ++ +L  L L 
Sbjct: 168 HLHLSCILLDLVSYH-IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 620 HNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
           +  L+    +      +      +   +      +T
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  120 bits (302), Expect = 5e-30
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 21/273 (7%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            +++  F +  +L  L L  N +   I P     L KL+ L L  NQL   +P ++    
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PK 121

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLY-GPIPP-SLGNLSNLANFYLNN 212
            L+ L    N++   + + +   L+ +  + L  N L    I   +   +  L+   + +
Sbjct: 122 TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIG 272
             +  +IP   G   S++ L L  N+++     SL  L+NL  L L  NS+S      + 
Sbjct: 181 TNI-TTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 273 NLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF------IPPILGNLKSLS 326
           N   L +L L+ N+L   +P  L +   + V+ L +N++S+        P       S S
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 327 ALGLHINQLN--GVIPSSIGNLSNLRLLYLYNN 357
            + L  N +    + PS+   +     + L N 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (298), Expect = 2e-29
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 19/262 (7%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164
            P    L+L  N     I      NL  L  L L NN+++ + P     L +L  LY   
Sbjct: 51  PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNNLLFDSI--PL 221
           NQL   +P+       + EL +  N +   +       L+ +    L  N L  S     
Sbjct: 110 NQLKE-LPE--KMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
               +K +S + ++   ++ +IP  L    +L  L+L  N ++    + +  L +L +L 
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS 341
           LS N +S     SL N   L  + L +N L   +P  L + K +  + LH N ++ +  +
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 342 SIG------NLSNLRLLYLYNN 357
                      ++   + L++N
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (270), Expect = 1e-25
 Identities = 62/351 (17%), Positives = 121/351 (34%), Gaps = 58/351 (16%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
            +  +  S   L   +P  L    +  +L L +N ++        NL++L  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
           S   P +   L  L  + L  N L      +   L+ L    +H N++  V  S    L+
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLN 145

Query: 348 NLRLLYLYNN--GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSI-GNLTELVLVNMCE 404
            + ++ L  N     G        +K +  + +    +   IP  +  +LTEL L     
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDG--- 201

Query: 405 NHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWR 464
           N ++     SL+ L +L ++  + N++S     +    P+L  L L+ N           
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------- 253

Query: 465 NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSL 524
                             +P  + +   +QV+ + +N+I                   ++
Sbjct: 254 -----------------KVPGGLADHKYIQVVYLHNNNIS------------------AI 278

Query: 525 NQLSGGMPFELGSLTELQYLDLSANKLRSWI--PKSIGNLLKLRYLNLSNN 573
                  P           + L +N ++ W   P +   +     + L N 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 8e-25
 Identities = 65/310 (20%), Positives = 121/310 (39%), Gaps = 24/310 (7%)

Query: 348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL 407
           +LR++   + G    VP+++        L+L  N++         NL  L  + +  N +
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 408 SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFP 467
           S   P +   L  LER+  ++N L     +       L  L + +N         +    
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLN 145

Query: 468 KLGTFIVSMNNISGSIPLEIGESF----KLQVLDISSNHIVGEIPVQLAKLFSLNKLILS 523
           ++    +  N +  S  +E G +F    KL  + I+  +I   IP  L    SL +L L 
Sbjct: 146 QMIVVELGTNPLK-SSGIENG-AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 524 LNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV 583
            N+++      L  L  L  L LS N + +    S+ N   LR L+L+NN+ + K+P  +
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL 259

Query: 584 EKLIHLSKLDLSYNFLGK------EMPFQICNMKSLEKLNLCHNNLSGFI--PRCFEGMH 635
               ++  + L  N +          P       S   ++L  N +  +   P  F  ++
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 636 NLSHIDISYN 645
             + + +   
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 29/284 (10%)

Query: 379 CTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           C++     +P  +  +   L L N   N ++       +NL +L  +    N +S     
Sbjct: 38  CSDLGLEKVPKDLPPDTALLDLQN---NKITEIKDGDFKNLKNLHTLILINNKISKISPG 94

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF----KL 493
           AF     L  L LS+N    E+         L    V  N I+  +       F    ++
Sbjct: 95  AFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVR---KSVFNGLNQM 147

Query: 494 QVLDISSNHI-VGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551
            V+++ +N +    I       +  L+ + ++   ++       G    L  L L  NK+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKI 204

Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNM 610
                 S+  L  L  L LS N  I  +         HL +L L+ N L  ++P  + + 
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADH 262

Query: 611 KSLEKLNLCHNNLSGF------IPRCFEGMHNLSHIDISYNELQ 648
           K ++ + L +NN+S         P       + S + +  N +Q
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
           L+V+  S   +  ++P  L        L L  N+++     +  +L  L  L L  NK+ 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKS 612
              P +   L+KL  L LS NQ ++++P ++     L +L +  N + K        +  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 613 LEKLNLCHNNL--SGFIPRCFEGMHNLSHIDISYNELQ 648
           +  + L  N L  SG     F+GM  LS+I I+   + 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            +   LDL  NK+         NL  L  L L NN+ I KI       L+ L +L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 110

Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
            L KE+P ++   K+L++L +  N ++      F G++ +  +++  N L+     +  F
Sbjct: 111 QL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 658 KD 659
           + 
Sbjct: 168 QG 169

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  121 bits (306), Expect = 2e-29
 Identities = 72/459 (15%), Positives = 159/459 (34%), Gaps = 50/459 (10%)

Query: 203 SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262
            N A+       +  +  +    L ++++LD   + ++         L+ L  L   SN+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNN 75

Query: 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNL 322
           ++  +   +    +L  L    N+L+    + +  L+ LT ++  +N L+         L
Sbjct: 76  ITT-LD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 323 KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR 382
             L+     + +++      + + + L  L  + N        ++     +  L+   N+
Sbjct: 130 TYLNCARNTLTEID------VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNK 181

Query: 383 LRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442
           +       +     L  +N   N+++      L     L  +  + N L+          
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT---EIDVTPL 232

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
             LT+ D S N        +     KL T      ++     +++  + +L         
Sbjct: 233 TQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
            + E+   +     L  L      ++     +L    +L YL L+  +L   +   + + 
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE-LD--VSHN 338

Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL------EKL 616
            KL+ L+  N   IQ     V K+  L+    +       MP +     SL      + L
Sbjct: 339 TKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQT-ITMPKETLTNNSLTIAVSPDLL 395

Query: 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655
           +   N ++  I     G+++ +   I++  L    P  T
Sbjct: 396 DQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (272), Expect = 3e-25
 Identities = 62/380 (16%), Positives = 136/380 (35%), Gaps = 42/380 (11%)

Query: 76  ISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQH 135
           IS  Q   + S++  +  +              L  L  + N +  T+   +   + L +
Sbjct: 36  ISEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTY 89

Query: 136 LDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI 195
           L   +N+LT +   ++  L +L  L  D N+L      ++ Q  L+  L    N L    
Sbjct: 90  LACDSNKLTNL---DVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLNCARNTLT--- 140

Query: 196 PPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
              + + + L     + N     + +       ++TLD S N+++      +     L  
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFNKITE---LDVSQNKLLNR 195

Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315
           L   +N+++      +     L  LD S N+L+    I +  L+ LT      N L+   
Sbjct: 196 LNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELD 249

Query: 316 PPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFE 375
              L  L +L  +   + +++           N +L+Y    G       ++ +   ++ 
Sbjct: 250 VSTLSKLTTLHCIQTDLLEID--------LTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301

Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV 435
           L+     +       +    +LV + +    L+  +   + + T L+ +     ++    
Sbjct: 302 LDCQAAGITEL---DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-- 353

Query: 436 YEAFGYHPNLTFLDLSQNNF 455
           + + G  P L     ++   
Sbjct: 354 FSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 2e-24
 Identities = 59/406 (14%), Positives = 133/406 (32%), Gaps = 41/406 (10%)

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
            N       +  +          L +L  LD   + ++    I    L+ LT +   SN+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNN 75

Query: 311 LSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYL 370
           +++     L    +L+ L    N+L  +    +  L+ L  L    N        ++   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQN 126

Query: 371 KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN 430
             +  L    N L       + + T+L  ++   N     +   +   T L  +  + N 
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 431 LSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES 490
           ++         +  L  L+   NN       +     +L     S N ++    +++   
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNI---TKLDLNQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 491 FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK 550
            +L   D S N +     + ++ L  L  L      L      +L   T+L Y      +
Sbjct: 233 TQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 551 LRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNM 610
               +   + +  +L  L+       +   +++ +   L  L L+   L +     + + 
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGITE---LDLSQNPKLVYLYLNNTELTE---LDVSHN 338

Query: 611 KSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTT 656
             L+ L+  + ++  F       +  L++   +  +       + T
Sbjct: 339 TKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLT 382

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  122 bits (308), Expect = 2e-29
 Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 33/281 (11%)

Query: 85  ISINLSSMGLNGTLQEF--AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ 142
           +S N     ++GT  ++  A+  +        + N     +      +++   L L    
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLN 70

Query: 143 LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNL 202
           L+  +P  +    Q+  L    N L   +P+    L     L  C N L   +P    +L
Sbjct: 71  LS-SLPDNLP--PQITVLEITQNALI-SLPELPASLE---YLDACDNRL-STLPELPASL 122

Query: 203 SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262
            +L    ++NN L   +P +   L+    ++   NQL+  +P    +L    +L + +N 
Sbjct: 123 KHL---DVDNNQL-TMLPELPALLE---YINADNNQLT-MLPELPTSLE---VLSVRNNQ 171

Query: 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVM----SLFSNSLSSFIPPI 318
           L+  +P +  +LE    LD+S N L  S+P                    N ++  IP  
Sbjct: 172 LTF-LPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPEN 225

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           + +L     + L  N L+  I  S+   +     +     F
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (269), Expect = 1e-24
 Identities = 56/347 (16%), Positives = 110/347 (31%), Gaps = 61/347 (17%)

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSF---IPPILGNLKSLSALGLHINQLNGVIPSSIGNL 346
           SI + + N  SL+  + F N++S             +  +  G + N+   ++   +  +
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           +    L L        +P+ +     I  LE+  N L   +P    +L  L   + C+N 
Sbjct: 59  NQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNALIS-LPELPASLEYL---DACDNR 111

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           LS  +P+   +L  L     + N L+  + E       L +++   N             
Sbjct: 112 LST-LPELPASLKHL---DVDNNQLT-MLPELPA---LLEYINADNNQL----------- 152

Query: 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ 526
                           +P        L+VL + +N +   +P       SL  L +S N 
Sbjct: 153 --------------TMLPELPT---SLEVLSVRNNQL-TFLPELPE---SLEALDVSTNL 191

Query: 527 LSGGMPFELGSLTELQ----YLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
           L   +P         +    +     N++   IP++I +L     + L +N    +I   
Sbjct: 192 LES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPR 629
           + +            +    M     N       +            
Sbjct: 250 LSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 3e-22
 Identities = 59/365 (16%), Positives = 111/365 (30%), Gaps = 107/365 (29%)

Query: 218 SIPLVLGNLKSISTLDLSKNQLSG---SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
           SI L + N  S+S  +   N +SG       +        +     N     +   +  +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
               +L L+   LS S+P +L     +TV+ +  N+L S +P +  +L+ L A    ++ 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALIS-LPELPASLEYLDACDNRLST 114

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394
           L    P    +L +L +                             N+L   +P     L
Sbjct: 115 L----PELPASLKHLDVDN---------------------------NQLTM-LPELPALL 142

Query: 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
             +   N   N L+  +P+   +L  L                            +  N 
Sbjct: 143 EYI---NADNNQLTM-LPELPTSLEVL---------------------------SVRNNQ 171

Query: 455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL 514
                                       +P        L+ LD+S+N +   +P    + 
Sbjct: 172 L-------------------------TFLPELPE---SLEALDVSTNLLE-SLPAVPVRN 202

Query: 515 FSLNKLILSL----NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
               +  +      N+++  +P  + SL     + L  N L S I +S+         + 
Sbjct: 203 HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 571 SNNQF 575
               F
Sbjct: 262 PRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 54/330 (16%), Positives = 100/330 (30%), Gaps = 55/330 (16%)

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV 398
           I   I N  +L     YN                        +        +     +  
Sbjct: 3   IMLPINNNFSLSQNSFYNT----------------------ISGTYADYFSAWDKWEKQA 40

Query: 399 LVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE 458
           L     N     + + L  +     ++ N+ NLS  + +     P +T L+++QN     
Sbjct: 41  LPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNAL-IS 94

Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLN 518
           +         L       N +S ++P        L+ LD+ +N +   +P   A    L 
Sbjct: 95  LP---ELPASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLT-MLPELPA---LLE 143

Query: 519 KLILSLNQLSGGMPFEL-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
            +    NQL+      L    T L+ L +  N+L   +P+   +L     L++S N  ++
Sbjct: 144 YINADNNQLT-----MLPELPTSLEVLSVRNNQLTF-LPELPESL---EALDVSTNL-LE 193

Query: 578 KIPIEVEKLIHLSK----LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEG 633
            +P    +  H  +         N +   +P  I ++     + L  N LS  I      
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 634 MHNLSHIDISYNELQGPIPNSTTFKDARME 663
                                 T      +
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 5/145 (3%)

Query: 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
            +      N     IP  + +L     + L +N L+  I   +         +       
Sbjct: 209 EIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKS 228
               Q+      + +               +  + +      + N     +   L +  S
Sbjct: 268 MSDGQQNTLHRPLAD--AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD-RLSDTVS 324

Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNL 253
                  + Q++ +    L   + L
Sbjct: 325 ARNTSGFREQVA-AWLEKLSASAEL 348

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  115 bits (289), Expect = 4e-28
 Identities = 54/272 (19%), Positives = 95/272 (34%), Gaps = 37/272 (13%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            +         +L  L L+ N +  TI      +L  L+HLDL  N L+  +       L
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL 123

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
           + L  L    N       + +G+ SL                    +L+ L    + N  
Sbjct: 124 SSLTFLNLLGNPY-----KTLGETSL------------------FSHLTKLQILRVGNMD 160

Query: 215 LFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN 273
            F  I       L  +  L++  + L    P SL ++ N+  L L+       +   +  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 274 LESLLQLDLSENQLSG----SIPI----SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325
             S+  L+L +  L       +      SL    +   + +   SL   +  +L  +  L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGL 279

Query: 326 SALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
             L    NQL  V       L++L+ ++L+ N
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 62/305 (20%), Positives = 112/305 (36%), Gaps = 22/305 (7%)

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
               GI    S SL+  IPS +   E++  LDLS N+++      L    +L  + L SN
Sbjct: 30  CDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI-G 368
            +++       +L SL  L L  N L+ +  S    LS+L  L L  N +       +  
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 369 YLKSIFELELCTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
           +L  +  L +        I       LT L  + +  + L    PKSL+++ ++  +  +
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487
                  +        ++  L+L   +                      + +S      +
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSL 250

Query: 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547
            + F  + + I+   +  ++   L ++  L +L  S NQL          LT LQ + L 
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

Query: 548 ANKLR 552
            N   
Sbjct: 310 TNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 49/280 (17%), Positives = 94/280 (33%), Gaps = 33/280 (11%)

Query: 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK 434
            L+L  NR+       +     L  + +  N ++     S  +L SLE +  + N LS  
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 435 VYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494
               F    +LTFL+L  N         ++   +   F                   KLQ
Sbjct: 116 SSSWFKPLSSLTFLNLLGNP--------YKTLGETSLF---------------SHLTKLQ 152

Query: 495 VLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
           +L + +     +I  +  A L  L +L +  + L    P  L S+  + +L L   +   
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 554 WIPKSIGNLLKLRYLNLSNNQF----IQKIPIEV----EKLIHLSKLDLSYNFLGKEMPF 605
            +   +     +  L L +         ++         K      + ++   L  ++  
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMK 271

Query: 606 QICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
            +  +  L +L    N L       F+ + +L  I +  N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 492 KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK 550
            LQ L ++SN I   I     + L SL  L LS N LS         L+ L +L+L  N 
Sbjct: 77  NLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 551 LRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQIC 608
            ++    S+  +L KL+ L + N     KI  +    L  L +L++  + L    P  + 
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 609 NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
           +++++  L L        +    +   ++  +++   +L     + 
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
           ++  L LS N+++     +L     LQ L L++N + +    S  +L  L +L+LS N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 576 IQKIPIEV-EKLIHLSKLDLSYN---FLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RC 630
           +  +     + L  L+ L+L  N    LG+   F   ++  L+ L + + +    I  + 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKD 169

Query: 631 FEGMHNLSHIDISYNELQ 648
           F G+  L  ++I  ++LQ
Sbjct: 170 FAGLTFLEELEIDASDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 19/182 (10%)

Query: 83  RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNN 141
           ++  + + +M     +Q   F+    L  L +  +    +  P+   ++  + HL L   
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMK 208

Query: 142 QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGN 201
           Q   ++   +   + +  L      L      E+                      SL  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE----------------TNSLIK 252

Query: 202 LSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
                N  + +  LF  +  +L  +  +  L+ S+NQL          L++L  ++L++N
Sbjct: 253 KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 262 SL 263
             
Sbjct: 312 PW 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (284), Expect = 2e-27
 Identities = 59/272 (21%), Positives = 104/272 (38%), Gaps = 20/272 (7%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            L++  F    HL  L L  N +   I  +    L KLQ L +  N L   IPP +   +
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PS 123

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLY-GPIPPSLGNLSNLANFYLNNN 213
            L  L    N++   +P+ +   L  +N + +  N L      P   +   L    ++  
Sbjct: 124 SLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 214 LLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN 273
            L   IP      ++++ L L  N++       L   S L  L L  N +       +  
Sbjct: 183 KL-TGIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIP------PILGNLKSLSA 327
           L +L +L L  N+LS  +P  L +L  L V+ L +N+++                   + 
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 328 LGLHINQL--NGVIPSSIGNLSNLRLLYLYNN 357
           + L  N +    V P++   +++   +   N 
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 3e-23
 Identities = 68/374 (18%), Positives = 122/374 (32%), Gaps = 81/374 (21%)

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
            L  +  S+  L  ++P  +      T++ L +N +S         L+ L AL L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT 395
           + +   +   L  L+ LY+  N                                   +L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKN-----------------------------------HLV 115

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
           E+             +P SL  L      R + N +       F    N+  +++  N  
Sbjct: 116 EI----------PPNLPSSLVEL------RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 456 Y-GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAK 513
                     +  KL    +S   ++  IP ++ E+  L  L +  N I   I ++ L +
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHNKIQ-AIELEDLLR 215

Query: 514 LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN 573
              L +L L  NQ+       L  L  L+ L L  NKL   +P  + +L  L+ + L  N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN 274

Query: 574 QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI--PRCF 631
             I K+ +                F                 ++L +N +  +   P  F
Sbjct: 275 N-ITKVGVND--------------FCPVGFG---VKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 632 EGMHNLSHIDISYN 645
             + +   I     
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 3e-23
 Identities = 66/309 (21%), Positives = 108/309 (34%), Gaps = 25/309 (8%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
           L+ +   +  L   +P EI        L    N +      +   L  +  L L +N + 
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252
                +   L  L   Y++ N L   IP  L    S+  L +  N++          L N
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHL-VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 253 LGILYLYSNSL-SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSL 311
           +  + +  N L +        +   L  L +SE +L+G   I      +L  + L  N +
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKI 205

Query: 312 SSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLK 371
            +     L     L  LGL  NQ+  +   S+  L  LR L+L NN     VP  +  LK
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 372 SIFELELCTNRLR---------GGIPHSIGNLTELVLVNMCENHLSGPI--PKSLRNLTS 420
            +  + L TN +           G          + L N   N +      P + R +T 
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN---NPVPYWEVQPATFRCVTD 321

Query: 421 LERVRFNQN 429
              ++F   
Sbjct: 322 RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 54/350 (15%), Positives = 102/350 (29%), Gaps = 55/350 (15%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
            +  +  S   L  ++P  +    +  +L L +N +S         L+ L  L L  N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
           S     +   L  L  + +  N L    P +  +L  L    +H N++  V       L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLR 147

Query: 348 NLRLLYLYNNGFY-GFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           N+  + +  N                +  L +   +L G        L EL L +   N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH---NK 204

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           +     + L   + L R+    N +      +  + P L  L L  N             
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---------- 254

Query: 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ 526
                           +P  + +   LQV+ + +N+I                    +  
Sbjct: 255 ---------------RVPAGLPDLKLLQVVYLHTNNIT------------------KVGV 281

Query: 527 LSGGMPFELGSLTELQYLDLSANKLRSWI--PKSIGNLLKLRYLNLSNNQ 574
                            + L  N +  W   P +   +     +   N +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 40/274 (14%)

Query: 379 CTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           C++     +P  I  + T L L N   N +S       + L  L  +    N +S    +
Sbjct: 40  CSDLGLKAVPKEISPDTTLLDLQN---NDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
           AF     L  L +S+N+                            IP  +  S  L  L 
Sbjct: 97  AFSPLRKLQKLYISKNHLV-------------------------EIPPNLPSS--LVELR 129

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT--ELQYLDLSANKLRSWI 555
           I  N I        + L ++N + +  N L     FE G+    +L YL +S  KL   I
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGLKLNYLRISEAKLTG-I 187

Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
           PK       L  L+L +N+ IQ I +E   +   L +L L +N +       +  + +L 
Sbjct: 188 PK--DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           +L+L +N LS  +P     +  L  + +  N + 
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 19/202 (9%)

Query: 97  TLQEFAFSSFPHLVHLNLSFN-IVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            + +  FS   ++  + +  N +      P   +  KL +L +   +LTG IP       
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPE 193

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNN 213
            L  L+ D N++   I  E   + S +  L L HN +   I   SL  L  L   +L+NN
Sbjct: 194 TLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNN 251

Query: 214 LLFDSIPLVLGNLKSISTLDLSKNQLSGSIP-------FSLGNLSNLGILYLYSNSLSGP 266
            L   +P  L +LK +  + L  N ++  +              +    + L++N +   
Sbjct: 252 KL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 267 I--PSVIGNLESLLQLDLSENQ 286
              P+    +   L +     +
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 9/157 (5%)

Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
           L+V+  S   +   +P +++       L L  N +S     +   L  L  L L  NK+ 
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKS 612
               K+   L KL+ L +S N  + +IP  +     L +L +  N + K        +++
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 613 LEKLNLCHNNL--SGFIPRCFEGMHNLSHIDISYNEL 647
           +  + +  N L  SGF P  F+G+  L+++ IS  +L
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            +   LDL  N +          L  L  L L NN+ I KI  +    L  L KL +S N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN 112

Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
            L  E+P  +    SL +L +  N +       F G+ N++ I++  N L+        F
Sbjct: 113 HL-VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 658 KDARME 663
              ++ 
Sbjct: 170 DGLKLN 175

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  114 bits (286), Expect = 5e-27
 Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 5/227 (2%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
            ++L+L  N +  +      HL+ L  L    N +          L+ +N L L  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 193 GPIPP-SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK-NQLSGSIPFSLGNL 250
             IP  +   LS L   +L NN +          + S+  LDL +  +L      +   L
Sbjct: 137 V-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
            NL  L L   ++   +P+ +  L  L +L++S N      P S   LSSL  + + ++ 
Sbjct: 196 FNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 311 LSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           +S         L SL  L L  N L+ +       L  L  L+L++N
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (282), Expect = 2e-26
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 31/243 (12%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            +Q   F    HL  L L  N +   I       L+ L  L+L +N LT +      +L+
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNNL 214
           +LR L+   N +                           IP  +   + +L    L    
Sbjct: 148 KLRELWLRNNPIES-------------------------IPSYAFNRVPSLMRLDLGELK 182

Query: 215 LFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN 273
             + I       L ++  L+L    +   +P +L  L  L  L +  N      P     
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
           L SL +L +  +Q+S     +   L+SL  ++L  N+LSS    +   L+ L  L LH N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

Query: 334 QLN 336
             N
Sbjct: 301 PWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 64/317 (20%), Positives = 112/317 (35%), Gaps = 18/317 (5%)

Query: 347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           +    +     G    VP+ I    +   L L  N ++     +  +L  L ++ +  N 
Sbjct: 54  NQFSKVVCTRRGL-SEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           +      +   L SL  +    N L+     AF Y   L  L L  N      S+ +   
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 467 PKLGTFIVSMNNISGSIPLEIGES-FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
           P L    +        I     E  F L+ L++   +I  ++P  L  L  L +L +S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 526 QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-E 584
                 P     L+ L+ L +  +++      +   L  L  LNL++N  +  +P ++  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFT 287

Query: 585 KLIHLSKLDLSYNFLGKEMPFQ-ICNMKSL-EKLNLCHNNLSGFIPRCF--EGMHNLSHI 640
            L +L +L L +N      P+   C++  L   L       S    RC     M     +
Sbjct: 288 PLRYLVELHLHHN------PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLV 341

Query: 641 DISYNELQGPIPNSTTF 657
           ++     Q   P     
Sbjct: 342 EVDQASFQCSAPFIMDA 358

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147
           +L  +     + E AF    +L +LNL    +     P +  L  L+ L++  N    + 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
           P     L+ L+ L+   +Q+          L+ + EL L HNNL          L  L  
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

Query: 208 FYLNNN 213
            +L++N
Sbjct: 295 LHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  113 bits (285), Expect = 6e-27
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 5/227 (2%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
            + L+L  NQ+  +      HL  L  L    N +          L+ +N L L  N L 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 193 GPIPP-SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK-NQLSGSIPFSLGNL 250
             IP  +   LS L   +L NN +          + S+  LDL +  +LS     +   L
Sbjct: 126 T-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
           SNL  L L   +L   IP+ +  L  L +LDLS N LS   P S   L  L  + +  + 
Sbjct: 185 SNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 311 LSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           +         NL+SL  + L  N L  +       L +L  ++L++N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (280), Expect = 2e-26
 Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 7/218 (3%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            ++  +F    HL  L LS N +  TI       L+ L  L+L +N+LT +      +L+
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 156 QLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNN 213
           +L+ L+   N +   IP     ++  +  L L        I   +   LSNL    L   
Sbjct: 137 KLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 214 LLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN 273
            L   IP  L  L  +  LDLS N LS   P S   L +L  L++  + +     +   N
Sbjct: 196 NL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSL 311
           L+SL++++L+ N L+         L  L  + L  N  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 5e-22
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 6/228 (2%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
             S +   +  L   +P  +   +N  +L L+ N +     +   +L  L  L LS N +
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
                 +   L++L  + LF N L++        L  L  L L  N +  +   +   + 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 348 NLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           +LR L L       ++ E     L ++  L L    LR  IP+ +  L +L  +++  NH
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNH 218

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454
           LS   P S + L  L+++   Q+ +      AF    +L  ++L+ NN
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 65/319 (20%), Positives = 119/319 (37%), Gaps = 24/319 (7%)

Query: 347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
           +    +          VP+ I    +   L L  N+++    +S  +L  L ++ +  NH
Sbjct: 43  NQFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466
           +      +   L +L  +    N L+     AF Y   L  L L  N      S+ +   
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 467 PKLGTFIVSMNNISGSIPLEIGESF----KLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522
           P L    +        I      +F     L+ L+++  ++  EIP  L  L  L++L L
Sbjct: 160 PSLRRLDLGELKRLSYIS---EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214

Query: 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
           S N LS   P     L  LQ L +  ++++     +  NL  L  +NL++N  +  +P +
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHD 273

Query: 583 V-EKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSL-EKLNLCHNNLSGFIPRCF--EGMHNL 637
           +   L HL ++ L +N      P+   C++  L   +     + +    RC     +   
Sbjct: 274 LFTPLHHLERIHLHHN------PWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGR 327

Query: 638 SHIDISYNELQGPIPNSTT 656
              ++  N      P    
Sbjct: 328 YIGELDQNYFTCYAPVIVE 346

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 82  ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN 141
             +  ++L  +     + E AF    +L +LNL+   +     P +  L KL  LDL  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGN 217

Query: 142 QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGN 201
            L+ + P     L  L+ L+   +Q+          L  + E+ L HNNL          
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 202 LSNLANFYLNNN 213
           L +L   +L++N
Sbjct: 278 LHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLN 155
            ++  +F    HL  L +  + +   I      NL  L  ++L +N LT +       L+
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 156 QLRSLYFDVNQLH 168
            L  ++   N  +
Sbjct: 280 HLERIHLHHNPWN 292

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (276), Expect = 1e-26
 Identities = 57/256 (22%), Positives = 93/256 (36%), Gaps = 28/256 (10%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164
                 L L  N    ++P  V   L++L  L L +N L+              SL    
Sbjct: 27  PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSL---- 80

Query: 165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VL 223
                              L L  N +   +  +   L  L +    ++ L       V 
Sbjct: 81  -----------------KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 224 GNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS-LSGPIPSVIGNLESLLQLDL 282
            +L+++  LD+S      +       LS+L +L +  NS     +P +   L +L  LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
           S+ QL    P +  +LSSL V+++  N+  S        L SL  L   +N +       
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 343 IGNL-SNLRLLYLYNN 357
           + +  S+L  L L  N
Sbjct: 243 LQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 48/228 (21%), Positives = 84/228 (36%), Gaps = 8/228 (3%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY- 192
             +   +  LT  +P  I   +    L  + N+L         +L+ + +L+L  N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 193 -GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL-GNL 250
            G    S    ++L    L+ N +  ++      L+ +  LD   + L     FS+  +L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI-PISLGNLSSLTVMSLFSN 309
            NL  L +           +   L SL  L ++ N    +  P     L +LT + L   
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
            L    P    +L SL  L +  N    +       L++L++L    N
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 29/246 (11%)

Query: 212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS--GPIPS 269
           N+    S+P  +    S + L+L  N+L          L+ L  L L SN LS  G    
Sbjct: 15  NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP-ILGNLKSLSAL 328
                 SL  LDLS N +  ++  +   L  L  +    ++L       +  +L++L  L
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP 388
            +               LS+L +L +  N F                           I 
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--------------------DIF 171

Query: 389 HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448
             + NLT L L       L    P +  +L+SL+ +  + NN        +    +L  L
Sbjct: 172 TELRNLTFLDLSQ---CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 449 DLSQNN 454
           D S N+
Sbjct: 229 DYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 2e-23
 Identities = 54/240 (22%), Positives = 89/240 (37%), Gaps = 27/240 (11%)

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
           +P  +   +S  R+    N L    +  F     LT L LS N          ++     
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTT 78

Query: 471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG 530
                                 L+ LD+S N ++  +      L  L  L    + L   
Sbjct: 79  ---------------------SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

Query: 531 MPFEL-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIH 588
             F +  SL  L YLD+S    R         L  L  L ++ N F +    ++  +L +
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 589 LSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L+ LDLS   L +  P    ++ SL+ LN+ HNN        ++ +++L  +D S N + 
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 60/281 (21%), Positives = 102/281 (36%), Gaps = 33/281 (11%)

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG- 358
           S T +   S  L+S    I  +   L    L  N+L  +       L+ L  L L +NG 
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 359 -FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL-R 416
            F G   +      S+  L+L  N +   +  +   L +L  ++   ++L      S+  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 417 NLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM 476
           +L +L  +  +  +        F    +L  L ++ N+F    +F    F +L       
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELR------ 175

Query: 477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFEL 535
                           L  LD+S   +  ++       L SL  L +S N       F  
Sbjct: 176 ---------------NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLK-LRYLNLSNNQF 575
             L  LQ LD S N + +   + + +    L +LNL+ N F
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 4/143 (2%)

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW--IPKSIGNLLKLRYLNLSNN 573
           S  +L L  N+L          LT+L  L LS+N L       +S      L+YL+LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 574 QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRCFE 632
             +  +      L  L  LD  ++ L +   F +  ++++L  L++ H +        F 
Sbjct: 89  G-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 633 GMHNLSHIDISYNELQGPIPNST 655
           G+ +L  + ++ N  Q       
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDI 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 6e-25
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 6/225 (2%)

Query: 135 HLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGP 194
                   L   +P  I      + ++   N++             +  L L  N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPF-SLGNLSN 252
              +   L+ L    L++N    S+       L  + TL L +  L   +       L+ 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130

Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
           L  LYL  N+L         +L +L  L L  N++S     +   L SL  + L  N ++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 313 SFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
              P    +L  L  L L  N L+ +   ++  L  L+ L L +N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
            Q + L  N+++ V          L  L+   N L          L+L+ +L L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 193 GPIPPS-LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNL 250
             + P+    L  L   +L+   L +  P +   L ++  L L  N L  ++P  +  +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
            NL  L+L+ N +S         L SL +L L +N+++   P +  +L  L  + LF+N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 311 LSSFIPPILGNLKSLSALGLHINQLN 336
           LS+     L  L++L  L L+ N   
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 8e-21
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 9/196 (4%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            +   +F +  +L  L L  N+    I       L+ L+ LDL +N     + P     L
Sbjct: 46  HVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 155 NQLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNN 212
            +L +L+ D   L   +   +   L+ +  L L  N L   +P  +  +L NL + +L+ 
Sbjct: 105 GRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHG 162

Query: 213 NLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI 271
           N +  S+P      L S+  L L +N+++   P +  +L  L  LYL++N+LS      +
Sbjct: 163 NRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 272 GNLESLLQLDLSENQL 287
             L +L  L L++N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 52/269 (19%), Positives = 82/269 (30%), Gaps = 53/269 (19%)

Query: 379 CTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           C  +    +P  I      + L     N +S     S R   +L  +  + N L+     
Sbjct: 18  CPQQGLQAVPVGIPAASQRIFLHG---NRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
           AF     L  LDLS N     +      F  LG                     +L  L 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPAT--FHGLG---------------------RLHTLH 111

Query: 498 ISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
           +    +  E+       L +L  L L  N L          L  L +L L  N++ S   
Sbjct: 112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL 616
           ++   L  L  L L  N+ +  +                         F+  ++  L  L
Sbjct: 171 RAFRGLHSLDRLLLHQNR-VAHVHPHA---------------------FR--DLGRLMTL 206

Query: 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
            L  NNLS         +  L ++ ++ N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 46/177 (25%), Positives = 67/177 (37%), Gaps = 5/177 (2%)

Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLN-QLSGGMP 532
             N IS            L +L + SN +   I       L  L +L LS N QL    P
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 533 FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSK 591
                L  L  L L    L+   P     L  L+YL L +N  +Q +P +    L +L+ 
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTH 157

Query: 592 LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L L  N +          + SL++L L  N ++   P  F  +  L  + +  N L 
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 1/134 (0%)

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
           +  ++ L  N++S        +   L  L L +N L      +   L  L  L+LS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 576 IQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634
           ++ +       L  L  L L    L +  P     + +L+ L L  N L       F  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 635 HNLSHIDISYNELQ 648
            NL+H+ +  N + 
Sbjct: 153 GNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 13/219 (5%)

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
           VP  I    +   + L  NR+      S      L ++ +  N L+     +   L  LE
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 423 RVRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNW-RNFPKLGTFIVSMNNIS 480
           ++  + N     V    F     L  L L +     E+     R    L    +  N + 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ 142

Query: 481 GSIPLEIGESF----KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELG 536
            ++P    ++F     L  L +  N I          L SL++L+L  N+++   P    
Sbjct: 143 -ALP---DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 537 SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
            L  L  L L AN L +   +++  L  L+YL L++N +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 88  NLSSMGLNG----TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQ 142
           NL+ + L+G    ++ E AF     L  L L  N     + P    +L +L  L L  N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212

Query: 143 LTGVIPPEI-GHLNQLRSLYFDVNQLH 168
           L+  +P E    L  L+ L  + N   
Sbjct: 213 LS-ALPTEALAPLRALQYLRLNDNPWV 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 2e-23
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
            L+    +  G + +T  +      L+ + +L      +     + +  L+ +  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N +    P  L NL+ +    L+ N L +     +  L+SI TLDL+  Q++   P +  
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA-- 126

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
            LSNL +LYL  N ++   P  +  L +L  L +   Q+S   P++  NLS LT +    
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           N +S   P  L +L +L  + L  NQ++ V  S + N SNL ++ L N 
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 2e-21
 Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 18/247 (7%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
            +    +  L+     V  TI   V  L+ L  L+L +NQ+T + P  + +L ++  L  
Sbjct: 37  QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
             N L       I  L  I  L L    +    P  L  LSNL   YL+ N + +  P  
Sbjct: 93  SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-- 146

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
           L  L ++  L +   Q+S   P  L NLS L  L    N +S   P  + +L +L+++ L
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHL 202

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
             NQ+S   P  L N S+L +++L + ++++       NL   + +         + P++
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPAT 258

Query: 343 IGNLSNL 349
           I +    
Sbjct: 259 ISDNGTY 265

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 21/256 (8%)

Query: 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYL 258
              L+N        + + D++     +L  I+TL      ++ +I   +  L+NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 259 YSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI 318
             N ++   P  + NL  + +L+LS N L  ++  ++  L S+  + L S  ++   P  
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
           L  L +L  L L +NQ+  +  S +  L+NL+ L + N          +  L  +  L+ 
Sbjct: 125 LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA 180

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
             N++    P  + +L  L+ V++  N +S   P  L N ++L  V      ++    + 
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN---QP 233

Query: 439 FGYHPNLTFLDLSQNN 454
             Y+ NL   ++ +  
Sbjct: 234 VFYNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 18/234 (7%)

Query: 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIV 474
              L +  ++   ++N++            +T L          I    +    L    +
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLEL 70

Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE 534
             N I+   PL+     K+  L++S N +       +A L S+  L L+  Q++   P  
Sbjct: 71  KDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA 126

Query: 535 LGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL 594
              L+ LQ L L  N++ +  P  +  L  L+YL++ N Q +  +   +  L  L+ L  
Sbjct: 127 --GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKA 180

Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
             N +    P  + ++ +L +++L +N +S   P       NL  + ++   + 
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 20/281 (7%)

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
              L +   +    + +   +     +L  +  L  +  G      E + YL ++  LEL
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
             N++    P  + NLT++  + +  N L      ++  L S++ +      ++      
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD--VTP 124

Query: 439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498
                NL  L L  N               L    +    +S   PL      KL  L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKA 180

Query: 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
             N I    P  LA L +L ++ L  NQ+S   P  L + + L  + L+   + +     
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 559 IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
             NL+    +   +   I   P  +      +  +L++N  
Sbjct: 237 NNNLVVPNVVKGPSGAPIA--PATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 37/198 (18%), Positives = 80/198 (40%), Gaps = 15/198 (7%)

Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509
           ++Q      I F               +N++ ++     +   +  L      +      
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG- 58

Query: 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN 569
            +  L +L  L L  NQ++   P +  +LT++  L+LS N L++    +I  L  ++ L+
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 570 LSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPR 629
           L++ Q     P+    L +L  L L  N +    P  +  + +L+ L++ +  +S   P 
Sbjct: 114 LTSTQITDVTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168

Query: 630 CFEGMHNLSHIDISYNEL 647
               +  L+ +    N++
Sbjct: 169 -LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSL 160
            A +    +  L+L+   +  T    +  LS LQ L L  NQ+T + P  +  L  L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220
                Q+    P  +  LS +  L    N +       L +L NL   +L NN + D  P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP 212

Query: 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
           L   N  ++  + L+   ++    F   NL    ++   S +     P+ I +  +    
Sbjct: 213 L--ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASP 268

Query: 281 DLSENQLS 288
           +L+ N  S
Sbjct: 269 NLTWNLTS 276

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 53/300 (17%), Positives = 89/300 (29%), Gaps = 22/300 (7%)

Query: 77  SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHL 136
           SCN ++     + +   L     E           L              +     L+ L
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRL 73

Query: 137 DLGNNQLTGVIPPEIGHL---NQLRSLYFDVNQLHGPIPQEIGQLSLINELAL-CHNNLY 192
            +   ++   I      +   + L+ L  +  ++ G  P  + + +  +   L   N  +
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 193 GPIPPSLGNLSNLAN-----FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI---- 243
                 L  L            +      +     +    ++STLDLS N   G      
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 244 ---PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP-ISLGNLS 299
              P     L  L +      + SG   ++      L  LDLS N L  +    S    S
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
            L  ++L    L      +   L  L    L  N+L+     S   L  +  L L  N F
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDRN--PSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 6e-19
 Identities = 52/247 (21%), Positives = 87/247 (35%), Gaps = 19/247 (7%)

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY--EAFGYHPNLTFLDL 450
           +L  L +               +  ++ L+ +      ++G           P+L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 451 SQNNFYGEISFNWRNFPKLGTFIVSM---NNISGSIPLEIGESFK-LQVLDISSNHIVGE 506
              ++    ++       L   +  +      S +   E    F  L  LD+S N  +GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 507 I-------PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI 559
                   P++   L  L      +   SG       +  +LQ LDLS N LR       
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 560 GNLL-KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL 618
            +   +L  LNLS    ++++P  +     LS LDLSYN L    P     +  +  L+L
Sbjct: 249 CDWPSQLNSLNLSFTG-LKQVPKGLPA--KLSVLDLSYNRL-DRNPS-PDELPQVGNLSL 303

Query: 619 CHNNLSG 625
             N    
Sbjct: 304 KGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 44/262 (16%), Positives = 82/262 (31%), Gaps = 24/262 (9%)

Query: 403 CENHLSGPIPK--SLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS 460
           C  + S P P   S  N      V       S +          L  +D   +       
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYL--------LKRVDTEADLGQFTDI 64

Query: 461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKL 520
               +  +L      + +      L +     LQ L + +  + G  P  L +    +  
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 521 ILSLNQLS-GGMPFELGSL-----TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
           IL+L  +S       L  L       L+ L ++     ++  + +     L  L+LS+N 
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 575 FIQKIPIEVE----KLIHLSKLDLSYNF---LGKEMPFQICNMKSLEKLNLCHNNLSGFI 627
            + +  +       K   L  L L                     L+ L+L HN+L    
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 628 PR-CFEGMHNLSHIDISYNELQ 648
                +    L+ +++S+  L+
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)

Query: 176 GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP---LVLGNLKSISTL 232
           G  SL   L              +    +L    +    +   I    L +  +  +  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 233 DLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS-GPIPSVIGNL-----ESLLQLDLSENQ 286
            L   +++G+ P  L   +   +  L   ++S     + +  L       L  L +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLS-------SFIPPILGNLKSLSALGLHINQLNGVI 339
                   +    +L+ + L  N          +  P     L+ L+     +   +GV 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 340 PSSIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSIGNLTELV 398
            +       L+ L L +N            +   +  L L    L+         L+ L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 399 LVNMCENHLSG-PIPKSLRNLTSL 421
           L     N L   P P  L  + +L
Sbjct: 281 LSY---NRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 6e-13
 Identities = 45/187 (24%), Positives = 62/187 (33%), Gaps = 13/187 (6%)

Query: 88  NLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG-- 145
           N+S    +  L E      P L  L+++          QV     L  LDL +N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 146 -----VIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSL 199
                + P +   L  L      +    G           +  L L HN+L      PS 
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 200 GNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLY 259
              S L +  L+   L   +P  L     +S LDLS N+L    P     L  +G L L 
Sbjct: 250 DWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLK 304

Query: 260 SNSLSGP 266
            N     
Sbjct: 305 GNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 16/195 (8%)

Query: 477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK---LILSLNQLSGGMPF 533
                    +I +S  L+ L + +  I   I     ++  ++    L L   +++G  P 
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 534 ELGSLT--ELQYLDLSANKL---RSWIPKSIGNLLK-LRYLNLSNNQFIQKIPIEVEKLI 587
            L   T  +L  L+L         +W+ +    L   L+ L+++    +     +V    
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 588 HLSKLDLSYNFL--GKEMPFQIC--NMKSLEKLNLCHNN---LSGFIPRCFEGMHNLSHI 640
            LS LDLS N     + +   +C     +L+ L L +      SG           L  +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 641 DISYNELQGPIPNST 655
           D+S+N L+      +
Sbjct: 234 DLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 83  RIISINLSSMGLNGT-LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLS-----KLQHL 136
            +  + L ++ + GT       ++ P L  LNL  N+ + T    +  L       L+ L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVL 154

Query: 137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI----GQLSLINELALCHNN-- 190
            +           ++     L +L    N   G           +   +  LAL +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 191 -LYGPIPPSLGNLSNLANFYL-NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
              G           L    L +N+L   +          +++L+LS   L   +P  L 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
             + L +L L  N L    PS    L  +  L L  N    S
Sbjct: 273 -PAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 514 LFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLL---KLRYLN 569
             SL  L+  ++  +    F ++     L+ L + A ++ S I      +L    L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 570 LSNNQFIQKIPIEVEKLIH--LSKLDLSYNFLGKEMPF----QICNMKSLEKLNLCHNNL 623
           L N +     P  + +     L+ L+L          +    Q      L+ L++   + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 624 SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
             F          LS +D+S N   G     +  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (252), Expect = 2e-22
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 16/229 (6%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
             ++    +L    +T  +      LN +  +  + + +     Q I  L  + +L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 74

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N L   I P L NL NL   +L+ N + D     L +LK + +L L  N +S  I   L 
Sbjct: 75  NKLTD-IKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           +L  L  LYL +N ++    +V+  L  L  L L +NQ+S  I   L  L+ L  + L  
Sbjct: 129 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 184

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           N +S      L  LK+L  L L   +      +   NL     +   + 
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.0 bits (246), Expect = 1e-21
 Identities = 57/302 (18%), Positives = 107/302 (35%), Gaps = 17/302 (5%)

Query: 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPF 245
           +  +     I P     +      L    + D++      L SI  +  + + +  S+  
Sbjct: 5   ITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG 60

Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMS 305
            +  L N+  L+L  N L+  I   + NL++L  L L EN++   +  SL +L  L  +S
Sbjct: 61  -IQYLPNVTKLFLNGNKLTD-I-KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS 115

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPE 365
           L  N +S      L +L  L +L L  N++  +  + +  L+ L  L L +N        
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V 169

Query: 366 EIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR 425
            +  L  +  L L  N +      ++  L  L ++ +              NL     V+
Sbjct: 170 PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPL 485
               +L      +         +      F  E+SF +     +G      +        
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 486 EI 487
           E+
Sbjct: 288 EV 289

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.3 bits (239), Expect = 7e-21
 Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 22/275 (8%)

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
              E +  N+ +  ++  +      L S++++  N +++     +   Y PN+T L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 74

Query: 453 NNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510
           N     ++      N   LG   +  N I     L+  +  KL+ L +  N I  +I   
Sbjct: 75  NK----LTDIKPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS-DING- 126

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
           L  L  L  L L  N+++      L  LT+L  L L  N++   I   +  L KL+ L L
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYL 182

Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
           S N  I  +   +  L +L  L+L       +      N+     +     +L    P  
Sbjct: 183 SKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 238

Query: 631 FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGN 665
                +    ++ ++  +     S  F      G 
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 2e-18
 Identities = 58/338 (17%), Positives = 108/338 (31%), Gaps = 68/338 (20%)

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPE 365
             S  +    P             L    +   +      L+++  +   N+        
Sbjct: 6   TVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD------- 54

Query: 366 EIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR 425
               +KS+  ++   N            +T+L L       +       L NL +L  + 
Sbjct: 55  ----IKSVQGIQYLPN------------VTKLFLNGNKLTDIKP-----LTNLKNLGWLF 93

Query: 426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPL 485
            ++N +      +      L  L L  N                   I  +N +      
Sbjct: 94  LDENKIK--DLSSLKDLKKLKSLSLEHNG------------------ISDINGLVHLP-- 131

Query: 486 EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLD 545
                 +L+ L + +N I  +I V L++L  L+ L L  NQ+S  +P     LT+LQ L 
Sbjct: 132 ------QLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLY 181

Query: 546 LSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF 605
           LS N +     +++  L  L  L L + + + K       L+  + +  +   L    P 
Sbjct: 182 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPE 237

Query: 606 QICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643
            I +    EK N+  +         F     ++     
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 2e-17
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 12/192 (6%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
               P++  L L+ N +   I P + NL  L  L L  N++  +    +  L +L+SL  
Sbjct: 61  IQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSL 116

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
           + N +       +  L  +  L L +N +       L  L+ L    L +N + D +PL 
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPL- 171

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
              L  +  L LSKN +S  +  +L  L NL +L L+S        +   NL     +  
Sbjct: 172 -AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 283 SENQLSGSIPIS 294
           ++  L     IS
Sbjct: 229 TDGSLVTPEIIS 240

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
           C       +PP L    +    +L+ NLL+      L     ++ L+L + +L+      
Sbjct: 17  CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73

Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMS 305
            G L  LG L L  N L   +P +   L +L  LD+S N+L+ S+P+     L  L  + 
Sbjct: 74  -GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPE 365
           L  N L +  P +L     L  L L  N L  +    +  L NL  L L  N  Y  +P+
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189

Query: 366 EIGYLKSIFELELCTN 381
                  +    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.8 bits (223), Expect = 7e-20
 Identities = 52/205 (25%), Positives = 77/205 (37%), Gaps = 36/205 (17%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
              L L  N L       +    +L  L  D  +L      ++                 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-----TKL----------------- 70

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP---FSLGN 249
                  G L  L    L++N L  S+PL+   L +++ LD+S N+L+ S+P        
Sbjct: 71  ----QVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR--G 122

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFS 308
           L  L  LYL  N L    P ++     L +L L+ N L+  +P  L   L +L  + L  
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181

Query: 309 NSLSSFIPPILGNLKSLSALGLHIN 333
           NSL + IP        L    LH N
Sbjct: 182 NSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.4 bits (222), Expect = 9e-20
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 33/230 (14%)

Query: 225 NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE 284
            + S   ++  K  L+ ++P  L    +  IL+L  N L     + +     L QL+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 285 NQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG 344
            +L+  + +  G L  L  + L  N L S +P +   L +L+ L +  N+L  +   ++ 
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 345 NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSI-GNLTELVLVNMC 403
            L  L+ LYL  N            LK++              P  +     +L  +++ 
Sbjct: 122 GLGELQELYLKGNE-----------LKTL--------------PPGLLTPTPKLEKLSLA 156

Query: 404 ENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
            N+L+      L  L +L+ +   +N+L       FG    L F  L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 11/160 (6%)

Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
             +L +S N +       L     L +L L   +L+       G+L  L  LDLS N+L+
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ 90

Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMP---FQIC 608
           S +P     L  L  L++S N+ +  +P+     L  L +L L  N L K +P       
Sbjct: 91  S-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLT-- 145

Query: 609 NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
               LEKL+L +NNL+        G+ NL  + +  N L 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 49/168 (29%), Positives = 66/168 (39%), Gaps = 10/168 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQ 156
           T        +  L  LNL    +  T     G L  L  LDL +NQL   +P     L  
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101

Query: 157 LRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSL-GNLSNLANFYLNNNL 214
           L  L    N+L   +P      L  + EL L  N L   +PP L      L    L NN 
Sbjct: 102 LTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNN 159

Query: 215 LFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
           L   +P  +L  L+++ TL L +N L  +IP        L   +L+ N
Sbjct: 160 L-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 53/198 (26%), Positives = 76/198 (38%), Gaps = 12/198 (6%)

Query: 379 CTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
           C  R    +P  +  + T L L     N L      +L   T L ++  ++  L+    +
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSE---NLLYTFSLATLMPYTRLTQLNLDRAELT--KLQ 71

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVL 496
             G  P L  LDLS N     +    +  P L    VS N ++ S+PL       +LQ L
Sbjct: 72  VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL 129

Query: 497 DISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
            +  N +   +P  L      L KL L+ N L+      L  L  L  L L  N L + I
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187

Query: 556 PKSIGNLLKLRYLNLSNN 573
           PK       L +  L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
            +   L LS N L ++   ++    +L  LNL   + + K+ ++   L  L  LDLS+N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQ 88

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L + +P     + +L  L++  N L+        G+  L  + +  NEL+
Sbjct: 89  L-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 56/234 (23%), Positives = 88/234 (37%), Gaps = 42/234 (17%)

Query: 111 HLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYFDVNQLH 168
           +L+LSFN     +      +  +LQ LDL   ++   I       L+ L +L    N + 
Sbjct: 32  NLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLK 227
             +                              LS+L         L  S+    +G+LK
Sbjct: 90  S-LALGA-----------------------FSGLSSLQKLVAVETNL-ASLENFPIGHLK 124

Query: 228 SISTLDLSKNQLSGSIP----FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL----LQ 279
           ++  L+++ N +  S      FS  NL+NL  L L SN +     + +  L  +    L 
Sbjct: 125 TLKELNVAHNLIQ-SFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
           LDLS N ++  I         L  ++L +N L S    I   L SL  + LH N
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 54/240 (22%), Positives = 91/240 (37%), Gaps = 36/240 (15%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP---FSLGNLS 251
           +P S  NL       L+ N L         +   +  LDLS+ ++  +I    +   +LS
Sbjct: 26  LPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ--SLS 76

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSNS 310
           +L  L L  N +          L SL +L   E  L+ S+    +G+L +L  +++  N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 311 LSSFIPP-ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369
           + SF  P    NL +L  L L  N++  +  + +  L  + LL L               
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL--------------- 180

Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
                 L+L  N +   I         L  + +  N L          LTSL+++  + N
Sbjct: 181 -----SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 6e-18
 Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 12/197 (6%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            L  ++F SFP L  L+LS   +  TI      +LS L  L L  N +   +       L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL-YGPIPPSLGNLSNLANFYLNNN 213
           + L+ L      L       IG L  + EL + HN +    +P    NL+NL +  L++N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 214 LLFDSIPL----VLGNLKSIS-TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP 268
            +  SI      VL  +  ++ +LDLS N ++  I         L  L L +N L     
Sbjct: 160 KI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 269 SVIGNLESLLQLDLSEN 285
            +   L SL ++ L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 8e-18
 Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 8/209 (3%)

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSN 309
            +   L L  N L         +   L  LDLS  ++  +I      +LS L+ + L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI-G 368
            + S        L SL  L      L  +    IG+L  L+ L + +N    F   E   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 369 YLKSIFELELCTNRLR---GGIPHSIGNLTELVLV-NMCENHLSGPIPKSLRNLTSLERV 424
            L ++  L+L +N+++         +  +  L L  ++  N ++  I         L+ +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKEL 205

Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
             + N L       F    +L  + L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 34/234 (14%)

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
            S + +  + N L      +F   P L  LDLS+       +     +  L         
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLS-------- 76

Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGS 537
                         L  L ++ N I   + +   + L SL KL+     L+    F +G 
Sbjct: 77  -------------HLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 538 LTELQYLDLSANKLRSWI-PKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHL----SK 591
           L  L+ L+++ N ++S+  P+   NL  L +L+LS+N+ IQ I       L  +      
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181

Query: 592 LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           LDLS N +   +         L++L L  N L       F+ + +L  I +  N
Sbjct: 182 LDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 492 KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK 550
           +LQVLD+S   I   I       L  L+ LIL+ N +          L+ LQ L      
Sbjct: 53  ELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 551 LRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV--EKLIHLSKLDLSYNFLGKEMPFQIC 608
           L S     IG+L  L+ LN+++N  IQ   +      L +L  LDLS N +       + 
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 609 NMKSLE----KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            +  +      L+L  N ++   P  F+ +  L  + +  N+L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 55/255 (21%), Positives = 93/255 (36%), Gaps = 54/255 (21%)

Query: 324 SLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRL 383
           S   L L  N L  +   S  +   L++L L           EI  ++            
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--------EIQTIED----------- 69

Query: 384 RGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHP 443
             G   S+ +L+ L+L     N +      +   L+SL+++   + NL+       G+  
Sbjct: 70  --GAYQSLSHLSTLIL---TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
            L  L+++ N          ++F     F  ++ N              L+ LD+SSN I
Sbjct: 125 TLKELNVAHNLI--------QSFKLPEYF-SNLTN--------------LEHLDLSSNKI 161

Query: 504 VGEIPVQ----LAKLFSLN-KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
              I       L ++  LN  L LSLN ++  +         L+ L L  N+L+S     
Sbjct: 162 Q-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGI 219

Query: 559 IGNLLKLRYLNLSNN 573
              L  L+ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
              + LDLS N LR     S  +  +L+ L+LS  + IQ I     + L HLS L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 598 FLGKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            + + +       + SL+KL     NL+         +  L  +++++N +Q
Sbjct: 87  PI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 34/210 (16%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
                 +  LG +    +       +N L  +                    + +L    
Sbjct: 21  TFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANIN--------------VTDL---- 59

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
                     +    N+ +  +NN    +  P+    L ++  L +    ++     +L 
Sbjct: 60  --------TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
            L++L +L +  ++    I + I  L  +  +DLS N     I   L  L  L  +++  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGV 338
           + +  +    + +   L+ L      + G 
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551
            ++ L I++ H     P  ++ L +L +L +    ++      L  LT L  LD+S +  
Sbjct: 67  NIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK 611
              I   I  L K+  ++LS N  I  I   ++ L  L  L++ ++ +      +  +  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE--DFP 181

Query: 612 SLEKLNLCHNNLSG 625
            L +L      + G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 201 NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
                 N  L  +    +  +    + S++ + L+   ++      +    N+  L + +
Sbjct: 21  TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILG 320
              +   P  I  L +L +L +    ++     +L  L+SLT++ +  ++    I   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358
            L  ++++ L  N     I   +  L  L+ L +  +G
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 25/183 (13%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ 526
                ++  +   S +  +   +   L  + +++ ++       +    ++  L ++   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 527 LSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKL 586
            +   P  +  L+ L+ L +    + S    ++  L  L  L++S++     I  ++  L
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 587 IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646
             ++ +DLSYN    ++   +  +  L+ LN+  + +  +     E    L+ +      
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 647 LQG 649
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 273 NLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
             ++ L   L ++  +    I+   ++SLT ++L + +++      +    ++  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 333 NQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
                   + I  LSNL  L +            +  L S+  L++  +     I   I 
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
            L ++  +++  N     I   L+ L  L+ +    + +    Y      P L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190

Query: 453 NN 454
             
Sbjct: 191 QT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 10/185 (5%)

Query: 225 NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE 284
             K+     L ++  +     +   +++L  + L + +++      I    ++  L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 285 NQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG 344
              +   PIS   LS+L  + +    ++S   P L  L SL+ L +  +  +  I + I 
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 345 NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCE 404
            L  +  + L  NG    +   +  L  +  L +  + +       I +  +L  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 405 NHLSG 409
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 8/166 (4%)

Query: 76  ISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQH 135
           I+  Q   +  I L+++ +   L         ++  L ++        P  +  LS L+ 
Sbjct: 38  ITEAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYNP--ISGLSNLER 92

Query: 136 LDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI 195
           L +    +T    P +  L  L  L    +     I  +I  L  +N + L +N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 196 PPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG 241
            P L  L  L +  +  + + D     + +   ++ L      + G
Sbjct: 153 MP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 10/183 (5%)

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
             K+     L  +    +   +   +++L  + L N          I Y  +I +L +  
Sbjct: 21  TFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
                  P  I  L+ L  + +    ++     +L  LTSL  +  + +     +     
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500
             P +  +DLS N    +I    +  P+L +  +  + +     +E  +  KL  L   S
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 501 NHI 503
             I
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
            K+     L  +         + +LT + L N+    L+G     +    +++ +  N  
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNI 76

Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
           + +   Y       NL  L +                           +++      +  
Sbjct: 77  HATN--YNPISGLSNLERLRIMG------------------------KDVTSDKIPNLSG 110

Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
              L +LDIS +     I  ++  L  +N + LS N     +   L +L EL+ L++  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169

Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQ 574
            +  +    I +  KL  L   +  
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 533 FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL 592
               +        L  +        +   +  L Y+ L+N   +  +   +E   ++  L
Sbjct: 17  IPDSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDL 71

Query: 593 DLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652
            ++        P     + +LE+L +   +++        G+ +L+ +DIS++     I 
Sbjct: 72  TINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 653 NS 654
             
Sbjct: 130 TK 131

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 16/229 (6%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
             ++    +L    +T  +      LN +  +  + + +     Q I  L  + +L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNG 77

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N L   I P L NL NL   +L+ N + D     L +LK + +L L  N +S  I   L 
Sbjct: 78  NKLTD-IKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           +L  L  LYL +N ++    +V+  L  L  L L +NQ+S  I   L  L+ L  + L  
Sbjct: 132 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 187

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           N +S      L  LK+L  L L   +      +   NL     +   + 
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 16/233 (6%)

Query: 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYL 258
               +      L    + D++      L SI  +  + + +  S+   +  L N+  L+L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 259 YSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI 318
             N L+      + NL++L  L L EN++   +  SL +L  L  +SL  N +S      
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDING-- 129

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
           L +L  L +L L  N++  +  + +  L+ L  L L +N     VP  +  L  +  L L
Sbjct: 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNL 431
             N +       +  L  L ++ +              NL     V+    +L
Sbjct: 186 SKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
                 +L + +    ++ N      +   I + ++I     ++      +  L ++ N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNK 79

Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
           +    P  LA L +L  L L  N++      +   L +L+ L L  N +       + +L
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDING--LVHL 133

Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
            +L  L L NN+ I  I + + +L  L  L L  N +   +P     +  L+ L L  N+
Sbjct: 134 PQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNH 189

Query: 623 LSGFIPRCFEGMHNLSHIDISYNELQ 648
           +S        G+ NL  +++   E  
Sbjct: 190 ISDLRA--LAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 9e-16
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 20/233 (8%)

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
              E +  N+ +  ++  +      L S++++  N +++  K  +   Y PN+T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 77

Query: 453 NNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510
           N     ++      N   LG   +  N +     L+  +  KL+ L +  N I  +I   
Sbjct: 78  NK----LTDIKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-DING- 129

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
           L  L  L  L L  N+++      L  LT+L  L L  N++       +  L KL+ L L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYL 185

Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623
           S N  I  +   +  L +L  L+L       +      N+     +     +L
Sbjct: 186 SKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 13/212 (6%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
               P++  L L+ N +   I P + NL  L  L L  N++  +    +  L +L+SL  
Sbjct: 64  IQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
           + N +       +  L  +  L L +N +       L  L+ L    L +N + D +P  
Sbjct: 120 EHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-- 173

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
           L  L  +  L LSKN +S  +  +L  L NL +L L+S        +   NL     +  
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 283 SENQLSGSIPIS-LGNLSSLTVMSLFSNSLSS 313
           ++  L     IS  G+     V        + 
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 49/247 (19%), Positives = 98/247 (39%), Gaps = 40/247 (16%)

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
                     +L K  ++ ++  +   L+++  +   ++ +       I  L ++ +L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFL 75

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
           + N+L+  I   L NL +L  + L  N +       L +LK L +L L  N ++ +  + 
Sbjct: 76  NGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NG 129

Query: 343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNM 402
           + +L  L  LYL NN               I ++              +  LT+L  +++
Sbjct: 130 LVHLPQLESLYLGNNK--------------ITDIT------------VLSRLTKLDTLSL 163

Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFN 462
            +N +S  +P  L  LT L+ +  ++N++S     A     NL  L+L       +   +
Sbjct: 164 EDNQISDIVP--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINH 219

Query: 463 WRNFPKL 469
             N    
Sbjct: 220 QSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 42/281 (14%)

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
                      L    +   +      L+++  +   N+       + I YL ++ +L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
             N+L    P  + NL  L  + + EN +      SL++L  L+ +    N +S      
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS--DING 129

Query: 439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498
             + P L  L L  N                   I  +  +S           KL  L +
Sbjct: 130 LVHLPQLESLYLGNNK------------------ITDITVLSRLT--------KLDTLSL 163

Query: 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
             N I   +P  LA L  L  L LS N +S      L  L  L  L+L + +  +     
Sbjct: 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 219

Query: 559 IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
             NL+    +  ++   +   P  +       K ++ ++  
Sbjct: 220 QSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLP 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
                   K  L    ++  +      L  +  +  + + ++S   + I  L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
           + N+ +  I   +  L +L  L L  N +      +  ++K L+ L+L HN +S      
Sbjct: 76  NGNK-LTDIK-PLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDING-- 129

Query: 631 FEGMHNLSHIDISYNELQ 648
              +  L  + +  N++ 
Sbjct: 130 LVHLPQLESLYLGNNKIT 147

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.9 bits (210), Expect = 8e-18
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 12/169 (7%)

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQ--LAKLFSLNKLILSLNQLSGGMPFELGSLT 539
           ++P  +       +LD+S N++   +  +    +L +L+ L+LS N L+         + 
Sbjct: 32  NVPQSLPSY--TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNF 598
            L+YLDLS+N L +       +L  L  L L NN  I  +     E +  L KL LS N 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 599 LGKEMPFQI----CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643
           +    P ++      +  L  L+L  N L        + +       + 
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 539 TELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
           +    LDLS N L     +     L  L  L LS+N  +  I  E    + +L  LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97

Query: 597 NFLGKEMP---FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           N L   +    F   ++++LE L L +N++       FE M  L  + +S N++ 
Sbjct: 98  NHL-HTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 40/193 (20%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQV--GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYF 162
             +   L+LS N     +  +     L+ L  L L +N L   I  E    +  LR L  
Sbjct: 38  PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNNLLFDSIPL 221
             N LH                          +      +L  L    L NN +   +  
Sbjct: 96  SSNHLHT-------------------------LDEFLFSDLQALEVLLLYNNHI-VVVDR 129

Query: 222 -VLGNLKSISTLDLSKNQLSGSIPF----SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
               ++  +  L LS+NQ+S   P         L  L +L L SN L     + +  L +
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 277 LLQ--LDLSENQL 287
            ++  L L  N L
Sbjct: 189 WVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI-GNLESLLQLDLSENQLS 288
           + L  SK QL  ++P SL   S   +L L  N+LS          L +L  L LS N L+
Sbjct: 21  NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 289 GSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
             I   +   + +L  + L SN L +    +  +L++L  L L+ N +  V  ++  +++
Sbjct: 78  -FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 348 NLRLLYLYNNGFYGFVPE---EIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL 399
            L+ LYL  N    F  E   +   L  +  L+L +N+L+      +  L   V 
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 21/168 (12%)

Query: 443 PNLTFLDLSQNNFYGEISFNW--RNFPKLGTFIVSMNNISGSIPLEIGESF----KLQVL 496
                LDLS NN    +   W       L + ++S N+++  I     E+F     L+ L
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FIS---SEAFVPVPNLRYL 93

Query: 497 DISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
           D+SSNH+   +     + L +L  L+L  N +          + +LQ L LS N++    
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-F 151

Query: 556 P----KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           P    K    L KL  L+LS+N+ ++K+P+    L  L     +  +L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD--LQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            +   AF   P+L +L+LS N +  T+   +  +L  L+ L L NN +  V+       +
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135

Query: 155 NQLRSLYFDVNQLHGPIPQEI----GQLSLINELALCHNNLYGPIPPSLGNLSNL--ANF 208
            QL+ LY   NQ+    P E+     +L  +  L L  N L       L  L        
Sbjct: 136 AQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 209 YLNNN 213
           YL+NN
Sbjct: 195 YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 33/204 (16%)

Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP--ILGNLKSLSALGLHINQLNG 337
           L  S+ QL  ++P SL   S   ++ L  N+LS  +        L +L +L L  N LN 
Sbjct: 23  LSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTEL 397
           +   +   + NLR L L +N                  L      L   +   +  L  L
Sbjct: 79  ISSEAFVPVPNLRYLDLSSN-----------------HLH----TLDEFLFSDLQALEVL 117

Query: 398 VLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH---PNLTFLDLSQNN 454
           +L N   NH+      +  ++  L+++  +QN +S    E        P L  LDLS N 
Sbjct: 118 LLYN---NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 455 FYGEISFNWRNFPKLGTFIVSMNN 478
                  + +  P      + ++N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHN 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.1 bits (206), Expect = 8e-18
 Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 10/189 (5%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL-GNLSNL 253
           IP     L       L +N L          L  +  L L+ N+L  ++P  +   L NL
Sbjct: 35  IPADTKKL------DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLS 312
             L++  N L      V   L +L +L L  NQL  S+P  +  +L+ LT +SL  N L 
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 313 SFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS 372
           S    +   L SL  L L+ NQL  V   +   L+ L+ L L NN            L+ 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 373 IFELELCTN 381
           +  L+L  N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 36/207 (17%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
            + LDL +N+L+ +       L +LR LY + N+L                         
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT----------------------- 75

Query: 193 GPIPPSL-GNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIP---FSL 247
             +P  +   L NL   ++ +N L  ++P+ V   L +++ L L +NQL  S+P   F  
Sbjct: 76  --LPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD- 130

Query: 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSL 306
            +L+ L  L L  N L      V   L SL +L L  NQL   +P      L+ L  + L
Sbjct: 131 -SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188

Query: 307 FSNSLSSFIPPILGNLKSLSALGLHIN 333
            +N L         +L+ L  L L  N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 492 KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK 550
           KL++L ++ N +   +P  +  +L +L  L ++ N+L          L  L  L L  N+
Sbjct: 62  KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 551 LRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQIC 608
           L+S +P  +  +L KL YL+L  N+ +Q +P  V +KL  L +L L  N L +       
Sbjct: 121 LKS-LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 609 NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
            +  L+ L L +N L       F+ +  L  + +  N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 10/170 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
           +L   AF     L  L L+ N    T+P  +   L  L+ L + +N+L   +P  +   L
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQL 108

Query: 155 NQLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSL-GNLSNLANFYLNN 212
             L  L  D NQL   +P  +   L+ +  L+L +N L   +P  +   L++L    L N
Sbjct: 109 VNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYN 166

Query: 213 NLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
           N L   +P      L  + TL L  NQL      +  +L  L +L L  N
Sbjct: 167 NQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
            + LD+ SN +         +L  L  L L+ N+L          L  L+ L ++ NKL+
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 553 SWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMP---FQI 607
           + +P  +   L+ L  L L  NQ ++ +P  V + L  L+ L L YN L + +P   F  
Sbjct: 99  A-LPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD- 154

Query: 608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
             + SL++L L +N L       F+ +  L  + +  N+L+
Sbjct: 155 -KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 4/177 (2%)

Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
           +LDL  N+LS     +   L+ L ++ L  N L +    I   LK+L  L +  N+L  +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSI-GNLTE 396
                  L NL  L L  N     +P  +   L  +  L L  N L+  +P  +   LT 
Sbjct: 101 PIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 397 LVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
           L  + +  N L      +   LT L+ ++ + N L      AF     L  L L +N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            + + LDL +NKL S   K+   L KLR L L++N+ +Q +P  + ++L +L  L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95

Query: 598 FLGKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L + +P  +   + +L +L L  N L    PR F+ +  L+++ + YNELQ
Sbjct: 96  KL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
            IP    +  +L L +   N LS    K+   LT L  +  N N L       F    NL
Sbjct: 34  NIP---ADTKKLDLQS---NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES-FKLQVLDISSNHIV 504
             L ++ N                            ++P+ + +    L  L +  N + 
Sbjct: 88  ETLWVTDNKL-------------------------QALPIGVFDQLVNLAELRLDRNQLK 122

Query: 505 GEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL 563
             +P ++   L  L  L L  N+L          LT L+ L L  N+L+     +   L 
Sbjct: 123 -SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 564 KLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
           +L+ L L NNQ ++++P    + L  L  L L  N
Sbjct: 182 ELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 38/248 (15%)

Query: 74  VGISCNQAERI--ISINLSSMGLNG----TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV 127
             ++C   +RI  +  +  ++ L      T+   AFS+ P++  + +S ++    +    
Sbjct: 16  FRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 128 -GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYFDVNQLHG-PIPQEIGQLSLINEL 184
             NLSK+ H+++ N +    I P+    L  L+ L      L   P   ++    +   L
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135

Query: 185 ALCHNNLYGPIPP-SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI 243
            +  N     IP  +   L N                          TL L  N  + S+
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNE-----------------------TLTLKLYNNGFT-SV 171

Query: 244 PFSLGNLSNLGILYLYSNSLSGPIPS-VIGNLESLLQ-LDLSENQLSGSIPI-SLGNLSS 300
                N + L  +YL  N     I     G + S    LD+S+  ++ ++P   L +L  
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230

Query: 301 LTVMSLFS 308
           L   + ++
Sbjct: 231 LIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 38/231 (16%), Positives = 67/231 (29%), Gaps = 32/231 (13%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
            Q L L    L  +      +L  +  +Y  ++            L  +   +       
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----------VTLQQLESHSF------ 76

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIP--FSLGN 249
                   NLS + +  + N      I    L  L  +  L +    L    P    + +
Sbjct: 77  -------YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 250 LSNLGILYLYSNSLSGPIPS-VIGNLESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLF 307
                IL +  N     IP      L +    L L  N  + S+     N + L  + L 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 308 SNSLSSFIPP-ILGNLKS-LSALGLHINQLNGVIPSSIGNLSNLRLLYLYN 356
            N   + I     G + S  S L +    +  +    + +L  L     + 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 20/214 (9%)

Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNW-RNFPKLGTFIVSM 476
             S + ++  + +L      AF   PN++ + +S +    ++  +   N  K+    +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 477 NNISGSIPLEIGESF----KLQVLDISSNHIVGEIPVQLAKLFSLNKL----ILSLNQLS 528
                 I     ++      L+ L I +  +    P  L K++S +      I     ++
Sbjct: 90  TRNLTYID---PDALKELPLLKFLGIFNTGLK-MFP-DLTKVYSTDIFFILEITDNPYMT 144

Query: 529 GGMPFELGSLT-ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKL 586
                    L  E   L L  N   S +     N  KL  + L+ N+++  I  +    +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 587 IH-LSKLDLSYNFLGKEMPFQIC-NMKSLEKLNL 618
               S LD+S   +   +P +   ++K L   N 
Sbjct: 204 YSGPSLLDVSQTSV-TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
                  +    +   IPS+  + +    L L E  L      +  NL +++ + +  + 
Sbjct: 11  HQEEDFRVTCKDIQR-IPSLPPSTQ---TLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 311 LSSFIPP-ILGNLKSLSALGLHINQLNGVIPSSI-GNLSNLRLLYLYNNGFYGFVPEE-I 367
               +      NL  ++ + +   +    I       L  L+ L ++N G   F     +
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 368 GYLKSIFELELCTNRLRGGIP-HSIGNLT-ELVLVNMCENHLSGPIPKSLRNLTSLERVR 425
                 F LE+  N     IP ++   L  E + + +  N  +  +     N T L+ V 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVY 185

Query: 426 FNQNNLSGKVYE-AF-GYHPNLTFLDLSQNN 454
            N+N     + + AF G +   + LD+SQ +
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 64/165 (38%), Gaps = 10/165 (6%)

Query: 492 KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFE-LGSLTELQYLDLSAN 549
            +  + +S +  + ++       L  +  + +   +    +  + L  L  L++L +   
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 550 KLRSWIP--KSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSK-LDLSYNFLGKEMPF 605
            L+   P    + +      L +++N ++  IP+   + L + +  L L  N     +  
Sbjct: 116 GLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG 173

Query: 606 QICNMKSLEKLNLCHNNLSGFIPR-CFEGMHN-LSHIDISYNELQ 648
              N   L+ + L  N     I +  F G+++  S +D+S   + 
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
               Q L L    LR+    +  NL  +  + +S +  +Q++       L  ++ +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 597 NFLGKEMP---FQICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYNELQGPIP 652
                 +     +   +  L+ L + +  L  F              ++I+ N     IP
Sbjct: 90  TRNLTYIDPDALK--ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 653 NST 655
            + 
Sbjct: 148 VNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 54/278 (19%)

Query: 299 SSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358
                  +    +   IP +  + ++L    L    L  +   +  NL N+  +Y+  + 
Sbjct: 11  HQEEDFRVTCKDIQR-IPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 359 FYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN 417
               +       L  +  +E+   R          NLT +              P +L+ 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTR----------NLTYID-------------PDALKE 103

Query: 418 LTSLERVRFNQNNLSG-KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM 476
           L  L+ +      L                 L+++ N +   I  N   F  L       
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCN----- 156

Query: 477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL- 535
                          +   L + +N     +         L+ + L+ N+    +  +  
Sbjct: 157 ---------------ETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 536 -GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
            G  +    LD+S   + +   K + +L +L   N   
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 10/230 (4%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNL 191
              L     +L  +          L  +    N +   I  ++   L  ++E+ +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 192 YGPIPPS-LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL--G 248
              I P    NL NL    ++N  +     +   +      LD+  N    +I  +   G
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE-NQLSGSIPISLGNLSSLTVMSLF 307
                 IL+L  N +   I +   N   L +L+LS+ N L           S   ++ + 
Sbjct: 152 LSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 308 SNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
              + S     L NLK L A   +  +    +P ++  L  L    L   
Sbjct: 211 RTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 46/235 (19%), Positives = 71/235 (30%), Gaps = 14/235 (5%)

Query: 85  ISINLSSMGLNG----TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLG 139
           +  N   +         +Q+ AFS F  L  + +S N V   I   V  NL KL  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 140 N-NQLTGVIPPEI-GHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP 197
             N L   I PE   +L  L+ L      +                L +  N     I  
Sbjct: 88  KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 198 SL--GNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
           +   G        +LN N + +         +         N L           S   I
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
           L +    +       + NL+ L        +    +P +L  L +L   SL   S
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 9/229 (3%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
           +      +++T  IP ++        L F + +L             + ++ +  N++  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 194 PIPPS-LGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIP-FSLGNL 250
            I      NL  L    +        I      NL ++  L +S   +   +P     + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS 127

Query: 251 SNLGILYLYSNSLSGPIPS-VIGNLESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFS 308
               +L +  N     I       L      L L++N +      +        +    +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
           N+L      +         L +   +++ +    + NL  LR    YN 
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 54/300 (18%), Positives = 100/300 (33%), Gaps = 53/300 (17%)

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           S  V     + ++     +  N   L      + +L  +   +     +L  + +  N  
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
              +         +F               ++  L E+ +     N+L    P++ +NL 
Sbjct: 67  LEVIEA------DVF--------------SNLPKLHEIRIEK--ANNLLYINPEAFQNLP 104

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
           +L+ +  +   +         +      LD+  N     I  N   F  L          
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--FVGL---------- 152

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILS-LNQLSGGMPFELGSL 538
                     SF+  +L ++ N I  EI         L++L LS  N L           
Sbjct: 153 ----------SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
           +    LD+S  ++ S     + NL KLR  +  N    +K+P  +EKL+ L +  L+Y  
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 6/162 (3%)

Query: 492 KLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILS-LNQLSGGMPFELGSLTELQYLDLSAN 549
            L+ ++IS N ++  I     + L  L+++ +   N L    P    +L  LQYL +S  
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSK-LDLSYNFLGKEMPFQI 607
            ++        + L+   L++ +N  I  I       L   S  L L+ N + +E+    
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSA 173

Query: 608 CNMKSLEKLNLCHNN-LSGFIPRCFEGMHNLSHIDISYNELQ 648
            N   L++LNL  NN L       F G      +DIS   + 
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 5/223 (2%)

Query: 183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSK-NQLS 240
           EL      L      +     +L    ++ N + + I   V  NL  +  + + K N L 
Sbjct: 34  ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 241 GSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLS 299
              P +  NL NL  L + +  +         +    + LD+ +N    +I   S   LS
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 300 S-LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358
               ++ L  N +           +         N L  +        S   +L +    
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 359 FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401
            +      +  LK +        + +      +  L E  L  
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLK-KLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 6/209 (2%)

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI-GESFKLQVLDIS-S 500
            N   L              +  F  L    +S N++   I  ++     KL  + I  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI- 559
           N+++   P     L +L  L++S   +            +   LD+  N     I ++  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 560 -GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC-NMKSLEKLN 617
            G   +   L L+ N  IQ+I         L +L+LS N   +E+P  +         L+
Sbjct: 150 VGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNE 646
           +    +        E +  L        +
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
           +I+ + L +N +    P +      L  + L +N +S   P     L SL  L L  N++
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 288 SGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL 346
           +  +P SL   L SL ++ L +N ++        +L +L+ L L+ N+L  +   +   L
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 347 SNLRLLYLYNN 357
             ++ ++L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP---FSLGNLS 251
           +P ++  +       L  N +    P      K +  +DLS NQ+S  +    F    L 
Sbjct: 30  LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ--GLR 80

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSNS 310
           +L  L LY N ++    S+   L SL  L L+ N+++  + + +  +L +L ++SL+ N 
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 311 LSSFIPPILGNLKSLSALGLHINQLN 336
           L +        L+++  + L  N   
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
           ++ L  N +    P       +L+ +DLS N++    P +   L  L  L L  N+ I +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE 94

Query: 579 IPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNL 637
           +P  + E L  L  L L+ N +         ++ +L  L+L  N L       F  +  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 638 SHIDISYN 645
             + ++ N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
             +  + L  N ++   P +     KLR ++LSNNQ I ++  +  + L  L+ L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90

Query: 598 FLGKEMPFQI-CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            +  E+P  +   + SL+ L L  N ++      F+ +HNL+ + +  N+LQ
Sbjct: 91  KI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 32/154 (20%)

Query: 112 LNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYFDVNQLHG 169
           + L  N     IPP       KL+ +DL NNQ++  + P+    L  L SL    N++  
Sbjct: 37  IRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 170 PIPQEIGQLSLINELALCHNNLYGPIPPSL-GNLSNLANFYLNNNLLFDSIPL-VLGNLK 227
                                    +P SL   L +L    LN N + + + +    +L 
Sbjct: 95  -------------------------LPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLH 128

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
           +++ L L  N+L      +   L  +  ++L  N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            +   AFS +  L  ++LS N +   + P     L  L  L L  N++T  +P  +   L
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGL 103

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQ-LSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN 213
             L+ L  + N+++  +  +  Q L  +N L+L  N L      +   L  +   +L  N
Sbjct: 104 FSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 24/157 (15%)

Query: 299 SSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358
            ++T + L  N++    P      K L  + L  NQ++ + P +   L +L  L LY N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90

Query: 359 FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNL 418
                      +            L   +   + +L  L+L     N ++     + ++L
Sbjct: 91  ----------KITE----------LPKSLFEGLFSLQLLLL---NANKINCLRVDAFQDL 127

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
            +L  +    N L       F     +  + L+QN F
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI 339
           + L +N +    P +      L  + L +N +S   P     L+SL++L L+ N++  + 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 340 PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL 399
            S    L +L+LL L  N            +  +          R      + NL  L L
Sbjct: 97  KSLFEGLFSLQLLLLNANK-----------INCL----------RVDAFQDLHNLNLLSL 135

Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
            +   N L      +   L +++ +   QN
Sbjct: 136 YD---NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
            ++  +R  QN +      AF  +  L  +DLS N                  F    + 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--------SELAP-DAFQGLRS- 81

Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGS 537
                         L  L +  N I  E+P  L   LFSL  L+L+ N+++         
Sbjct: 82  --------------LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126

Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI 576
           L  L  L L  NKL++    +   L  ++ ++L+ N FI
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 76/458 (16%), Positives = 136/458 (29%), Gaps = 80/458 (17%)

Query: 227 KSISTLDLSKNQLS-GSIPFSLGNLSNLGILYLYSNSLS----GPIPSVIGNLESLLQLD 281
             I +LD+   +LS       L  L    ++ L    L+      I S +    +L +L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 282 LSENQLSGSIPISLGNL-----SSLTVMSLFSNSLS----SFIPPILGNLKSLSALGLHI 332
           L  N+L       +          +  +SL +  L+      +   L  L +L  L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 333 NQLNGVIPSSIG-----NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGI 387
           N L       +          L  L L                + +  + L         
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA------ASCEPLASV-LRAKP----- 170

Query: 388 PHSIGNLTELVLVNMCENHLSGP----IPKSLRNLT-SLERVRFNQNNLSGK----VYEA 438
                +  EL    +  N ++      + + L++    LE ++     ++      +   
Sbjct: 171 -----DFKEL---TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 439 FGYHPNLTFLDLSQNNFYGE-----ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK- 492
                +L  L L  N                   +L T  +    I+     ++    + 
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 493 ---LQVLDISSNHIVGEIPVQLAKLF-----SLNKLILSLNQLS--GGMPFE--LGSLTE 540
              L+ L ++ N +  E    L +        L  L +     +      F   L     
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 541 LQYLDLSANKLRSWIPKSIGNLLK-----LRYLNLSNNQF----IQKIPIEVEKLIHLSK 591
           L  L +S N+L     + +   L      LR L L++          +   +     L +
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 592 LDLSYNFLGKEMPFQIC-----NMKSLEKLNLCHNNLS 624
           LDLS N LG     Q+          LE+L L     S
Sbjct: 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 8e-13
 Identities = 55/352 (15%), Positives = 101/352 (28%), Gaps = 50/352 (14%)

Query: 347 SNLRLLYLYNNGF-YGFVPEEIGYLKSIFELELCTNRLR----GGIPHSIGNLTELVLVN 401
            +++ L +           E +  L+    + L    L       I  ++     L  +N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 402 MCENHLSGPIPKSL-----RNLTSLERVRFNQNNLSGK----VYEAFGYHPNLTFLDLSQ 452
           +  N L       +          ++++      L+G     +       P L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 453 NNFYGE-----ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK----LQVLDISSNHI 503
           N                   +L    +   ++S +    +    +     + L +S+N I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 504 VGEIPVQLAKLF-----SLNKLILSLNQLSG-GMPF---ELGSLTELQYLDLSANKLRSW 554
                  L +        L  L L    ++          + S   L+ L L +NKL   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 555 IPKSIGNLLK-----LRYLNLSNNQF----IQKIPIEVEKLIHLSKLDLSYNFLGKEMPF 605
               +   L      LR L +            +   +     L +L L+ N LG E   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 606 QICNM-----KSLEKLNLCHNNLSG----FIPRCFEGMHNLSHIDISYNELQ 648
            +C         LE L +   + +                L  + IS N L+
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 80/479 (16%), Positives = 148/479 (30%), Gaps = 84/479 (17%)

Query: 109 LVHLNLSFN-IVFGTIPPQVGNLSKLQHLDLGNNQLT----GVIPPEIGHLNQLRSLYFD 163
           +  L++    +        +  L + Q + L +  LT      I   +     L  L   
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 164 VNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD----SI 219
            N+L      ++G   ++  L                    +    L N  L       +
Sbjct: 65  SNEL-----GDVGVHCVLQGLQTPS--------------CKIQKLSLQNCCLTGAGCGVL 105

Query: 220 PLVLGNLKSISTLDLSKNQLSGS-----IPFSLGNLSNLGILYLYSNSLS----GPIPSV 270
              L  L ++  L LS N L  +         L     L  L L   SLS     P+ SV
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 271 IGNLESLLQLDLSENQLSGSIPISLG-----NLSSLTVMSLFSNSLS----SFIPPILGN 321
           +       +L +S N ++ +    L      +   L  + L S  ++      +  I+ +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 322 LKSLSALGLHINQL-----NGVIPSSIGNLSNLRLLYLYNNGF----YGFVPEEIGYLKS 372
             SL  L L  N+L       + P  +   S LR L+++  G      G +   +   +S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 373 IFELELCTNRLRG--------GIPHSIGNLTELVLVNMCENHLSG----PIPKSLRNLTS 420
           + EL L  N L           +      L  L + +      +          L     
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS---CSFTAACCSHFSSVLAQNRF 342

Query: 421 LERVRFNQNNLSGKVYEAFG-----YHPNLTFLDLSQNNF----YGEISFNWRNFPKLGT 471
           L  ++ + N L                  L  L L+  +        ++        L  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 472 FIVSMNNISGSIPLEIGESFK-----LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
             +S N +  +  L++ ES +     L+ L +   +   E+  +L  L      +  ++
Sbjct: 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 58/303 (19%), Positives = 95/303 (31%), Gaps = 71/303 (23%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVG-------------NLSKLQHLDLGNNQLT--- 144
               + P    L +S N         +              +  +L+ L L +  +T   
Sbjct: 164 SVLRAKPDFKELTVSNN--------DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 145 -GVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLS 203
              +   +     LR L    N+L      E+          L H +            S
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCP-------GLLHPS------------S 256

Query: 204 NLANFYLNNNLLFD----SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNL-----SNLG 254
            L   ++    +       +  VL   +S+  L L+ N+L       L          L 
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 255 ILYLYSNSLSG----PIPSVIGNLESLLQLDLSENQL--SGSIPISLG---NLSSLTVMS 305
            L++ S S +        SV+     LL+L +S N+L  +G   +  G     S L V+ 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 306 LFSNSLS----SFIPPILGNLKSLSALGLHINQLN--GVIPSSIG---NLSNLRLLYLYN 356
           L    +S    S +   L    SL  L L  N L   G++            L  L LY+
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 357 NGF 359
             +
Sbjct: 437 IYW 439

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 231 TLDLSKNQLSGSIPFSL-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
            L L+ N+ +      +   L  L  +   +N ++            + ++ L+ N+L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 290 SIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN 348
           ++   +   L SL  + L SN ++         L S+  L L+ NQ+  V P +   L +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 349 LRLLYLYNN 357
           L  L L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL 253
           IP     L       LNNN         +   L  +  ++ S N+++     +    S +
Sbjct: 30  IPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSNSLS 312
             + L SN L      +   LESL  L L  N+++  +   S   LSS+ ++SL+ N ++
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 313 SFIPPILGNLKSLSALGLHINQLN 336
           +  P     L SLS L L  N  N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 519 KLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
           +L L+ N+ +          L +L+ ++ S NK+      +      +  + L++N+ ++
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LE 94

Query: 578 KIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHN 636
            +  ++ + L  L  L L  N +          + S+  L+L  N ++   P  F+ +H+
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 637 LSHIDISYN 645
           LS +++  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 539 TELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
                L L+ N+        I   L +LR +N SNN+ I  I     E    ++++ L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90

Query: 597 NFLGKEMPFQIC-NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           N L + +  ++   ++SL+ L L  N ++      F G+ ++  + +  N++ 
Sbjct: 91  NRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 39/158 (24%)

Query: 112 LNLSFNIVFGTIPPQVG--NLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYFDVNQLH 168
           L L+ N  F  +        L +L+ ++  NN++T  I        + +  +    N+L 
Sbjct: 37  LRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSL-GNLSNLANFYLNNNLLFDSIPL-VLGNL 226
                                     +   +   L +L    L +N +   +       L
Sbjct: 95  N-------------------------VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 227 KSISTLDLSKNQLSGSIP---FSLGNLSNLGILYLYSN 261
            S+  L L  NQ++ ++    F    L +L  L L +N
Sbjct: 129 SSVRLLSLYDNQIT-TVAPGAFD--TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 443 PNLTFLDLSQNNFYG-EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF----KLQVLD 497
                L L+ N F   E +  ++  P+L     S N I+    +E G +F     +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEG-AFEGASGVNEIL 87

Query: 498 ISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP 556
           ++SN +   +  ++   L SL  L+L  N+++         L+ ++ L L  N++ + + 
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VA 145

Query: 557 KSI-GNLLKLRYLNLSNNQF 575
                 L  L  LNL  N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 299 SSLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
                + L +N  +      I   L  L  +    N++  +   +    S +  + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 358 GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN 417
                       L++          ++  +   + +L  L    +  N ++     S   
Sbjct: 92  R-----------LEN----------VQHKMFKGLESLKTL---MLRSNRITCVGNDSFIG 127

Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
           L+S+  +    N ++     AF    +L+ L+L  N F
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            ++E AF     +  + L+ N     +  ++   L  L+ L L +N++T  +  +    L
Sbjct: 71  DIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 155 NQLRSLYFDVNQLH 168
           + +R L    NQ+ 
Sbjct: 129 SSVRLLSLYDNQIT 142

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 13/234 (5%)

Query: 412 PKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT 471
            +       L R   +    +  +         L  L+         I    R    L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531
              ++   S    L+  +  +   LD   +  + E  V   +   +  L L+   L+  +
Sbjct: 401 EKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--V 455

Query: 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591
              L  L  + +LDLS N+LR+ +P ++  L  L  L  S+N  ++ +   V  L  L +
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQE 512

Query: 592 LDLSYNFLGK-EMPFQICNMKSLEKLNLCHNNLS---GFIPRCFEGMHNLSHID 641
           L L  N L +      + +   L  LNL  N+L    G   R  E + ++S I 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.3 bits (192), Expect = 3e-15
 Identities = 49/325 (15%), Positives = 101/325 (31%), Gaps = 34/325 (10%)

Query: 352 LYLYNNGFYG-FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
            + Y+    G   P ++     +   E C +            +  L+L+          
Sbjct: 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEW 287

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD-----LSQNNFYGEISFNWRN 465
                RN  S   +                +    T  D     +   +       +   
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 466 FPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN 525
             +L    +S+   +  +  E+    +LQ L+  +   +  I + +  L  L     +L 
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 526 QLSG---------------------GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
             S                                +++ L L+   L       +  LL 
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLL 464

Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           + +L+LS+N+ ++ +P  +  L  L  L  S N L + +   + N+  L++L LC+N L 
Sbjct: 465 VTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQ 521

Query: 625 GF-IPRCFEGMHNLSHIDISYNELQ 648
                +       L  +++  N L 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.1 bits (189), Expect = 7e-15
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGN---NQLTGVIPPEIGHLNQLRS 159
             S   L  L         TI   +  L  L +        + L  V P    +L+ LRS
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 160 LYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSI 219
            +   N +         + + +  L L H +L   +   L  L  + +  L++N L  ++
Sbjct: 428 KFLLENSV------LKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RAL 478

Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG-PIPSVIGNLESLL 278
           P  L  L+ +  L  S N L  ++   + NL  L  L L +N L        + +   L+
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 279 QLDLSENQLS 288
            L+L  N L 
Sbjct: 537 LLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 39/293 (13%), Positives = 81/293 (27%), Gaps = 60/293 (20%)

Query: 172 PQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIST 231
                      E  L  +               L    L+       +   L + K +  
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKS-TVLQSELESCKELQE 376

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD--------LS 283
           L+        +I   +  L  L                 +    +L  +D          
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYE-----------KETLQYFSTLKAVDPMRAAYLDDL 425

Query: 284 ENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343
            ++      +     + + V+ L    L+      L  L  ++ L L  N+L   +P ++
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMC 403
             L  L +L   +N            L+++                 + NL  L  + +C
Sbjct: 483 AALRCLEVLQASDN-----------ALENV---------------DGVANLPRLQELLLC 516

Query: 404 ENHLSG-PIPKSLRNLTSLERVRFNQNNLS------GKVYEAFGYHPNLTFLD 449
            N L      + L +   L  +    N+L        ++ E     P+++ + 
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML---PSVSSIL 566

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 17/229 (7%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
            L+     +LG   +T ++      L+ +++   D + +       +   + + EL L H
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N +   + P L +L+ L    +N N L +   +    L     L L  N+L      SL 
Sbjct: 73  NQISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELR-DTD-SLI 125

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
           +L NL IL + +N L      ++G L  L  LDL  N+++ +    L  L  +  + L  
Sbjct: 126 HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTG 181

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
               +        L   + +     +   + P  I N  +     +   
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 45/238 (18%), Positives = 86/238 (36%), Gaps = 15/238 (6%)

Query: 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYL 258
              L+N     L    + D +      L  +   +   + +  S+   +   +NL  L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHL 70

Query: 259 YSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI 318
             N +S   P  + +L  L +L ++ N+L     ++    + L+ + L +N L       
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 319 LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELEL 378
           L +LK+L  L +  N+L  +    +G LS L +L L+ N         +  LK +  ++L
Sbjct: 124 LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVY 436
              +           L     V   +     P   S         V +     + +V 
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 18/204 (8%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
                 + + N   + +  ++   +   + L+ L L +NQ++ + P  +  L +L  L  
Sbjct: 37  QKELSGVQNFNGDNSNI-QSLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92

Query: 163 DVNQLHGPIPQEIGQLSLIN--ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220
           + N+L     + +  +       L L +N L      SL +L NL    + NN L   + 
Sbjct: 93  NRNRL-----KNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM 145

Query: 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
             LG L  +  LDL  N+++ +    L  L  +  + L               L     +
Sbjct: 146 --LGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 281 DLSENQLSGSIPIS-LGNLSSLTV 303
              + +      IS  G+     V
Sbjct: 202 KDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551
                ++    +   +     +L  +       + +       +   T L+ L LS N++
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQI 75

Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK 611
               P  + +L KL  L+++ N+ ++ +         LS+L L  N L       + ++K
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNR-LKNL--NGIPSACLSRLFLDNNELRDTDS--LIHLK 128

Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           +LE L++ +N L   +      +  L  +D+  NE+ 
Sbjct: 129 NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
            N    +L + +    +S        +  F    +NI     ++      L+ L +S N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHLSHNQ 74

Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
           I  ++   L  L  L +L ++ N+L             L  L L  N+LR     S+ +L
Sbjct: 75  IS-DLS-PLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHL 127

Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
             L  L++ NN+ ++ I   +  L  L  LDL  N +          +K +  ++L    
Sbjct: 128 KNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQK 183

Query: 623 LS 624
             
Sbjct: 184 CV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
              F +L  L+LS N +   + P + +L+KL+ L +  N+L  +          L  L+ 
Sbjct: 59  MQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFL 113

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
           D N+L       +  L  +  L++ +N L       LG LS L    L+ N + ++    
Sbjct: 114 DNNELRDTDS--LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG-- 167

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
           L  LK ++ +DL+  +           L     +         P    I N  S +   +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYY--ISNGGSYVDGCV 225

Query: 283 SENQLS 288
                 
Sbjct: 226 LWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 41/253 (16%), Positives = 82/253 (32%), Gaps = 41/253 (16%)

Query: 330 LHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPH 389
                +N V P     L+N     L                 S+ +L             
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQ--------------SVTDLV------------ 35

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
           S   L+ +   N   +++       ++  T+L+ +  + N +S            L  L 
Sbjct: 36  SQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQIS--DLSPLKDLTKLEELS 91

Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509
           +++N     ++        L    +  N +  +  L       L++L I +N +   I  
Sbjct: 92  VNRNRL-KNLNGI--PSACLSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK-SIV- 144

Query: 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN 569
            L  L  L  L L  N+++      L  L ++ ++DL+  K  +   K    L     + 
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 570 LSNNQFIQKIPIE 582
             + ++I    I 
Sbjct: 203 DPDGRWISPYYIS 215

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
           L L  NQ++   P    +L NL  LYL SN L      V  +L  L  LDL  NQL+  +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 292 PISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           P ++   L  L  + +  N L+  +P  +  L  L+ L L  NQL  +   +   LS+L 
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 351 LLYLYNN 357
             YL+ N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP-- 244
           C +  +  +P   G  +N    YL++N +    P V  +L ++  L L  NQL  ++P  
Sbjct: 26  CRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVG 82

Query: 245 -FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTV 303
            F   +L+ L +L L +N L+    +V   L  L +L +  N+L+  +P  +  L+ LT 
Sbjct: 83  VFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139

Query: 304 MSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
           ++L  N L S        L SL+   L  N 
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
            L L  NQ++   P    SL  L+ L L +N+L +       +L +L  L+L  NQ +  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV 102

Query: 579 IPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNL 637
           +P  V ++L+HL +L +  N L  E+P  I  +  L  L L  N L       F+ + +L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 638 SHIDISYN 645
           +H  +  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
           Q L L +NQ+T + P     L  L+ LY   NQL          L+ +  L L  N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-T 101

Query: 194 PIPP----SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
            +P      L +L  L   ++  N L   +P  +  L  ++ L L +NQL      +   
Sbjct: 102 VLPSAVFDRLVHLKEL---FMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 250 LSNLGILYLYSN 261
           LS+L   YL+ N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSS 313
           ILYL+ N ++   P V  +L +L +L L  NQL  ++P+ +  +L+ LTV+ L +N L+ 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
               +   L  L  L +  N+L   +P  I  L++L  L L  N
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
           T  Q L L  N++    P    +L+ L+ L L +NQ +  +P+ V + L  L+ LDL  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98

Query: 598 FLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L   +P  + + +  L++L +C N L+  +PR  E + +L+H+ +  N+L+
Sbjct: 99  QL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
            L+   F S  +L  L L  N   G +P  V  +L++L  LDLG NQLT V+P  +   L
Sbjct: 54  KLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRL 111

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN 213
             L+ L+   N+L   +P+ I +L+ +  LAL  N L      +   LS+L + YL  N
Sbjct: 112 VHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 6/126 (4%)

Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI 339
           L L +NQ++   P    +L +L  + L SN L +    +  +L  L+ L L  NQL  + 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104

Query: 340 PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPH----SIGNLT 395
            +    L +L+ L++  N     +P  I  L  +  L L  N+L+  IPH     + +LT
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLT 162

Query: 396 ELVLVN 401
              L  
Sbjct: 163 HAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 27/164 (16%)

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
           S+P   G  ++  ++ L  N ++   P +  +L +L  L L  NQL  +      +L+ L
Sbjct: 33  SVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
            +L L  N            L            L   +   + +L EL +   C N L+ 
Sbjct: 91  TVLDLGTN-----------QLTV----------LPSAVFDRLVHLKELFM---CCNKLTE 126

Query: 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
            +P+ +  LT L  +  +QN L    + AF    +LT   L  N
Sbjct: 127 -LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 60/238 (25%), Positives = 89/238 (37%), Gaps = 62/238 (26%)

Query: 125 PQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL 184
                L+ +  +   N+ +  V    I +L  +R L    N+LH                
Sbjct: 35  VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH---------------- 76

Query: 185 ALCHNNLYGPIPPSLG---NLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLS 240
                         +     L+NL    L  N L  S+P  V   L ++  L L +NQL 
Sbjct: 77  -------------DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 241 GSIPFSLGN-LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLS 299
            S+P  + + L+NL  L L  N L      V   L +L +LDLS NQL  S+P   G   
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE--GVFD 178

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
            LT                      L  L L+ NQL  V       L++L+ ++L++N
Sbjct: 179 KLT---------------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 14/162 (8%)

Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELG---SLTELQYLDLSA 548
            +  +  +++ I     +Q   L ++  L L  N+L      ++     LT L YL L+ 
Sbjct: 42  SIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLH-----DISALKELTNLTYLILTG 94

Query: 549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQI 607
           N+L+S        L  L+ L L  NQ +Q +P  V +KL +L+ L+L++N L + +P  +
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGV 152

Query: 608 C-NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
              + +L +L+L +N L       F+ +  L  + +  N+L+
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 28/173 (16%)

Query: 102 AFSSFPHLVHLNLSFNI-----VFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQ 156
                P++ +L L  N                 L+ L +L L  NQL  +       L  
Sbjct: 58  GIQYLPNVRYLALGGNKLHDISALK-------ELTNLTYLILTGNQLQSLPNGVFDKLTN 110

Query: 157 LRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPP----SLGNLSNLANFYLNN 212
           L+ L    NQL         +L+ +  L L HN L   +P      L NL+ L    L+ 
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTEL---DLSY 166

Query: 213 NLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIP---FSLGNLSNLGILYLYSN 261
           N L  S+P  V   L  +  L L +NQL  S+P   F    L++L  ++L+ N
Sbjct: 167 NQL-QSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFD--RLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 62/279 (22%), Positives = 96/279 (34%), Gaps = 86/279 (30%)

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
                +L   S++  +      L S+  +  + + +  V    I  L N+R L L  N  
Sbjct: 20  ETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK- 74

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419
                     L  I                 + NLT L+L     N L          LT
Sbjct: 75  ----------LHDI------------SALKELTNLTYLIL---TGNQLQSLPNGVFDKLT 109

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
           +L+ +   +N L       F    NLT+L+L+ N              +L +        
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN--------------QLQS-------- 147

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP---FELG 536
                L  G      V D            +L  L    +L LS NQL   +P   F+  
Sbjct: 148 -----LPKG------VFD------------KLTNL---TELDLSYNQLQ-SLPEGVFD-- 178

Query: 537 SLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQ 574
            LT+L+ L L  N+L+S +P  +   L  L+Y+ L +N 
Sbjct: 179 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 44/185 (23%)

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
             ++ +L +  ++     +   L+S+  +   ++ + S +  I   L ++  L L  N+L
Sbjct: 20  ETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKS-VQGI-QYLPNVRYLALGGNKL 75

Query: 336 NGVIPSSIG---NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR---GGIPH 389
                  I     L+NL  L L  N            L ++ EL L  N+L+    G+  
Sbjct: 76  -----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRN-LTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448
            + NLT L L +               N L SL +  F++  L+           NLT L
Sbjct: 131 KLTNLTYLNLAH---------------NQLQSLPKGVFDK--LT-----------NLTEL 162

Query: 449 DLSQN 453
           DLS N
Sbjct: 163 DLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
            E    +L    +   + ++   L  +  +  +N+  I+ +   ++ L ++  L L  N 
Sbjct: 19  AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGNK 74

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
           L      +   + +L  L L  N L       F+ + NL  + +  N+LQ
Sbjct: 75  LHDISALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.2 bits (176), Expect = 4e-13
 Identities = 97/579 (16%), Positives = 192/579 (33%), Gaps = 158/579 (27%)

Query: 159 SLYFDVNQLHGPIPQEIGQLSLINELAL-CHNNLYG---PIPPSLGNLSNLANFY-LNNN 213
            L  +   L  PI  E  Q S++  + +   + LY           N+S L  +  L   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSRLQPYLKLRQA 143

Query: 214 LL-FDSIPLV-----LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267
           LL       V     LG+ K+   LD+  +       + +    +  I +L   + + P 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLS-------YKVQCKMDFKIFWLNLKNCNSP- 195

Query: 268 PSVIGNLESLL-QLDLSENQL---SGSIPISLGN----LSSLTVMSLFSNSLSSFIPPIL 319
            +V+  L+ LL Q+D +       S +I + + +    L  L     + N L      +L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VL 250

Query: 320 GNLKS---LSALGLH------------INQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVP 364
            N+++    +A  L              + L+    + I +L +  +            P
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSM---------TLTP 300

Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
           +E   +KS+       +     +P  +       L ++        I +S+R+       
Sbjct: 301 DE---VKSLLLK--YLDCRPQDLPREVLTTNPRRL-SI--------IAESIRD----GLA 342

Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY-GEISFNWRNFPKLGTFIVSMNNISGSI 483
            ++        ++        T ++ S N     E     + F +L  F  S +     I
Sbjct: 343 TWDN-------WKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAH-----I 387

Query: 484 PLEIGESFKLQVL--DISSNHIVGEIPVQLAKLFSLNK----LILSLNQLSGGMPFELGS 537
           P  +     L ++  D+  +  V  +  +L K   + K      +S+  +   +  +L +
Sbjct: 388 PTIL-----LSLIWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 538 LTEL------QYL--------DLSANKLRSWIPKSIG------------NLLKLRYLNLS 571
              L       Y         DL    L  +    IG             L ++ +L+  
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 572 NNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF---------QIC-NMKSLEKLNLCHN 621
              F+++      K+ H      ++N  G  +            IC N    E+L    N
Sbjct: 502 ---FLEQ------KIRHD---STAWNASGSILNTLQQLKFYKPYICDNDPKYERL---VN 546

Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA 660
            +  F+P+  E +    + D+    L     +   F++A
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMA--EDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-08
 Identities = 79/591 (13%), Positives = 171/591 (28%), Gaps = 172/591 (29%)

Query: 9   LILSLLLNLSHSIASYSTKEALAL-LKWKKSLQNQNSSLLTSW-TLYPANATNVSSYSKT 66
            +   LL+    +     +E L +  K+          L++   T     +     Y + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKF----------LMSPIKTEQRQPSMMTRMYIEQ 115

Query: 67  KINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIV------F 120
           + +         N  +     N+S +     L++        L+ L  + N++       
Sbjct: 116 R-DRL------YNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGS 161

Query: 121 G--TIPPQVGNLSKLQH--------LDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGP 170
           G   +   V    K+Q         L+L N      +      L  L+ L + ++     
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLYQIDP---- 211

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
                      N  +   ++    I   + ++       L +    + + LVL N+++  
Sbjct: 212 -----------NWTSRSDHSS--NIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAK 257

Query: 231 TLDLSKNQLSGSIPFSLG--------NLSNLGILYLYSNSLSGPIPSVI--GNLESLLQL 280
             +           F+L                    ++ LS    + I   +    L  
Sbjct: 258 AWN----------AFNLSCKILLTTRFKQV-------TDFLSAATTTHISLDHHSMTLTP 300

Query: 281 DLSENQLSGSIPISLGNLS------SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
           D  ++ L   +     +L       +   +S+ + S+         N K ++      ++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVN-----CDK 354

Query: 335 LNGVIPSSIGNLS--NLRLLYLYNNGFYGF-----VPE---EIGYLKSIFE-----LELC 379
           L  +I SS+  L     R ++        F     +P     + +   I       +   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 380 TNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP-------KSLRNLTSLERV-------- 424
                            LV     E+ +S  IP         L N  +L R         
Sbjct: 412 HKYS-------------LVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 425 -RFNQNNLS-----GKVYEAFGYHPNLTFLDLSQN-NFYGEISFNWRNF--PKLGTFIVS 475
             F+ ++L         Y   G+H  L  ++  +    +  +  ++R F   K+     +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTA 513

Query: 476 MNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ 526
            N     +         LQ L     +I    P     + ++   +  + +
Sbjct: 514 WNASGSILNT-------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 55/333 (16%), Positives = 101/333 (30%), Gaps = 110/333 (33%)

Query: 3   ISILNILILSLL--LNLSHSIASYSTKEALALL-KWKKSLQNQNSSLLTSWTLYPANATN 59
             + + L  +    ++L H   + +  E  +LL K+   L  +   L       P     
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDL-------PREV-- 322

Query: 60  VSSYSKTKINPCA-----------------WVGISCNQAERIISINLSSMGLNGTLQEF- 101
                    NP                   W  ++C++   II  +L+ +      + F 
Sbjct: 323 ------LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL--RS 159
             S FP   H           IP  +  LS +         +       +  +N+L   S
Sbjct: 377 RLSVFPPSAH-----------IPTIL--LSLIW------FDVIKSDVMVV--VNKLHKYS 415

Query: 160 LYFDVNQ--------LHGPIPQEIGQLSLINELALCHNNL---Y---------GPIPPSL 199
           L   V +        +   I  E+ ++ L NE AL H ++   Y           IPP L
Sbjct: 416 L---VEKQPKESTISIPS-IYLEL-KVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 200 GNLSNLANFY---------LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNL 250
                   FY         + +        +V  + + +      K +   +   + G++
Sbjct: 470 DQY-----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE----QKIRHDSTAWNASGSI 520

Query: 251 SN-LGILYLYSN--SLSGPIPS-VIGNLESLLQ 279
            N L  L  Y      + P    ++  +   L 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
           LDL  N L          L++L  LYL  N L      V   L SL  L+LS NQL  S+
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 292 PISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           P  +   L+ L  ++L +N L S    +   L  L  L L+ NQL  V       L++L+
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 351 LLYLYNN 357
            ++L++N
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
            L L  N L          LT L  L L  NKL+S        L  L YLNLS NQ +Q 
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQS 90

Query: 579 IPIEV-EKLIHLSKLDLSYNFLGKEMP---FQICNMKSLEKLNLCHNNLSGFIPR-CFEG 633
           +P  V +KL  L +L L+ N L + +P   F    +  L+ L L  N L   +P   F+ 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQL-QSLPDGVFD--KLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 634 MHNLSHIDISYN 645
           + +L +I +  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
            +LDL  N L  +       L  L  LY   N+L         +L+ +  L L  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-Q 89

Query: 194 PIPP----SLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPF-SL 247
            +P      L  L  L    LN N L  S+P  V   L  +  L L +NQL  S+P    
Sbjct: 90  SLPNGVFDKLTQLKEL---ALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144

Query: 248 GNLSNLGILYLYSN 261
             L++L  ++L+ N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            +  YLDL  N L+S        L  L  L L  N+ +Q +P  V  KL  L+ L+LS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86

Query: 598 FLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L + +P  + + +  L++L L  N L       F+ +  L  + +  N+L+
Sbjct: 87  QL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
            LDL  N L          L+SLT + L  N L S    +   L SL+ L L  NQL  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPH----SIGN 393
                  L+ L+ L L  N     +P+ +   L  + +L L  N+L+  +P      + +
Sbjct: 92  PNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTS 149

Query: 394 LTELVLVN 401
           L  + L +
Sbjct: 150 LQYIWLHD 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
           S+P   G  +  T + L +NSL S    +   L SL+ L L  N+L  +       L++L
Sbjct: 21  SVPT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
             L L  N            L+S          L  G+   +  L EL L     N L  
Sbjct: 79  TYLNLSTN-----------QLQS----------LPNGVFDKLTQLKELAL---NTNQLQS 114

Query: 410 PIPKSL-RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
            +P  +   LT L+ +R  QN L       F    +L ++ L  N
Sbjct: 115 -LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSG 241
           +L L    L      +   L+ L    L+ N L  ++   V  +L  + TL L+ NQL+ 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 242 SIPFSL-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLS 299
           S+P  +  +L+ L  LYL  N L      V   L  L +L L+ NQL  SIP      L+
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
           +L  +SL +N L S        L  L  + L  NQ +
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 50/181 (27%), Positives = 69/181 (38%), Gaps = 34/181 (18%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
           + LDL +  L  +       L +L  L  D NQL   +   +                  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFD---------------- 80

Query: 194 PIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIP---FSLGN 249
                  +L+ L    L NN L  S+P  V  +L  +  L L  NQL  S+P   F    
Sbjct: 81  -------DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD--R 129

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFS 308
           L+ L  L L +N L          L +L  L LS NQL  S+P  +   L  L  ++LF 
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188

Query: 309 N 309
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
           LDL    L+     +   L+ L  L L  N L      V  +L  L  L L+ NQL+ S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 292 PISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           P+ +  +L+ L  + L  N L S    +   L  L  L L+ NQL  +   +   L+NL+
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158

Query: 351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTN 381
            L L  N            L  +  + L  N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
           + LD+ S  +          L  L  L L  NQL          LTEL  L L+ N+L S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMP---FQICN 609
                  +L +L  L L  NQ ++ +P  V ++L  L +L L+ N L + +P   F    
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFD--K 153

Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
           + +L+ L+L  N L       F+ +  L  I +  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
           L+L    +          L+KL  L+L  NQL  +       L +L +L    NQL   +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-L 98

Query: 172 PQEI-GQLSLINELALCHNNLYGPIPPSL-GNLSNLANFYLNNNLLFDSIPL-VLGNLKS 228
           P  +   L+ +++L L  N L   +P  +   L+ L    LN N L  SIP      L +
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156

Query: 229 ISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSN 261
           + TL LS NQL  S+P  +   L  L  + L+ N
Sbjct: 157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 26/178 (14%)

Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
           +LDL    L+     +   L+ LT ++L  N L +    +  +L  L  LGL  NQL  +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV 398
                 +L+ L  LYL  N            LKS          L  G+   +  L EL 
Sbjct: 99  PLGVFDHLTQLDKLYLGGN-----------QLKS----------LPSGVFDRLTKLKELR 137

Query: 399 LVNMCENHLSGPIPKSL-RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
           L     N L   IP      LT+L+ +  + N L    + AF     L  + L  N F
Sbjct: 138 L---NTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
           KL L    L+         LT+L +L+L  N+L++       +L +L  L L+NNQ +  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LAS 97

Query: 579 IPIEV-EKLIHLSKLDLSYNFLGKEMPFQIC-NMKSLEKLNLCHNNLSGFIPRCFEGMHN 636
           +P+ V + L  L KL L  N L K +P  +   +  L++L L  N L       F+ + N
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 637 LSHIDISYNELQ 648
           L  + +S N+LQ
Sbjct: 157 LQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
            + + LDL +  L +    +   L KL +LNL  NQ +Q +   V + L  L  L L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN 93

Query: 598 FLGKEMP---FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L   +P   F   ++  L+KL L  N L       F+ +  L  + ++ N+LQ
Sbjct: 94  QL-ASLPLGVFD--HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRS 159
            F     L  L L+ N    ++P  V  +L++L  L LG NQL   +P  +   L +L+ 
Sbjct: 78  VFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKE 135

Query: 160 LYFDVNQLHGPIPQEI-GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN 213
           L  + NQL   IP     +L+ +  L+L  N L      +   L  L    L  N
Sbjct: 136 LRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
              E++      L+      F     LT+L+L  N      +  + +  +LGT  ++ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 479 ISGSIPLEIGESF-KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMP---F 533
           ++ S+PL + +   +L  L +  N +   +P  +  +L  L +L L+ NQL   +P   F
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151

Query: 534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
           +   LT LQ L LS N+L+S    +   L KL+ + L  NQF
Sbjct: 152 D--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314
            LYL  N  +  +P  + N + L  +DLS N++S     S  N++ L  + L  N L   
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
            P     LKSL  L LH N ++ V   +  +LS L  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG 254
           IP  +  L      YL+ N     +P  L N K ++ +DLS N++S     S  N++ L 
Sbjct: 29  IPRDVTEL------YLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSN 309
            L L  N L    P     L+SL  L L  N +S  +P  +  +LS+L+ +++ +N
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
           L L  NQ +  +P  L N  +L ++ L +N +S        N+  LL L LS N+L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 292 PISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
           P      L SL ++SL  N +S        +L +LS L +  N L 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
           +L L  NQ +  +P EL +   L  +DLS N++ +   +S  N+ +L  L LS N+ ++ 
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92

Query: 579 IPIEV-EKLIHLSKLDLSYNFLGKEMP---FQICNMKSLEKLNLCHNN 622
           IP    + L  L  L L  N +   +P   F   ++ +L  L +   N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFN--DLSALSHLAI-GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 25/110 (22%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF 598
            ++  L L  N+    +PK + N   L  ++LSNN+ I  +  +                
Sbjct: 31  RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNR-ISTLSNQS--------------- 73

Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
                 F   NM  L  L L +N L    PR F+G+ +L  + +  N++ 
Sbjct: 74  ------FS--NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
           TL     S++ HL  ++LS N +  T+  Q   N+++L  L L  N+L   IPP     L
Sbjct: 44  TLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGL 101

Query: 155 NQLRSLYFDVNQL 167
             LR L    N +
Sbjct: 102 KSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLSGGMPFEL 535
           N  +  +P E+     L ++D+S+N I   +  Q  + +  L  LILS N+L    P   
Sbjct: 41  NQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98

Query: 536 GSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQF 575
             L  L+ L L  N +   +P+    +L  L +L +  N  
Sbjct: 99  DGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 57/154 (37%)

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
           L L  N  F  +P ++ N   L  +DL NN+++  +  +           F         
Sbjct: 36  LYLDGN-QFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQS----------FS-------- 75

Query: 172 PQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSIS 230
                                        N++ L    L+ N L   IP      LKS+ 
Sbjct: 76  -----------------------------NMTQLLTLILSYNRL-RCIPPRTFDGLKSLR 105

Query: 231 TLDLSKNQLSGSIP---FSLGNLSNLGILYLYSN 261
            L L  N +S  +P   F+  +LS L  L + +N
Sbjct: 106 LLSLHGNDIS-VVPEGAFN--DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361
           T + L  N  +  +P  L N K L+ + L  N+++ +   S  N++ L  L L  N    
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPH----SIGNLTELVLVN 401
             P     LKS+  L L  N +   +P      +  L+ L +  
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 56/356 (15%), Positives = 106/356 (29%), Gaps = 90/356 (25%)

Query: 319 LGNLKSLSALGLHINQLNGV----IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY--LKS 372
           +    S+    L ++ +       + + +    +++ + L  N         IG    + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT--------IGTEAARW 51

Query: 373 IFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP-------KSLRNLTSLERVR 425
           + E  + + +          +L      ++    +   IP       ++L     L  VR
Sbjct: 52  LSEN-IASKK----------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100

Query: 426 FNQNNLSGK----VYEAFGYHPNLTFLDLSQNNF-------------YGEISFNWRNFPK 468
            + N         + +    H  L  L L  N                  ++   +N P 
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160

Query: 469 LGTFIVSMNNISGSIPLEIGESFK----LQVLDISSNHIVGE-IPVQLAKLFSLNKLILS 523
           L + I   N +      E  ++F+    L  + +  N I  E I   L +  +       
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC----- 215

Query: 524 LNQLSGGMPFELGSLTELQYLDLSANKLR----SWIPKSIGNLLKLRYLNLSNNQF---- 575
                           EL+ LDL  N       S +  ++ +   LR L L++       
Sbjct: 216 ---------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 576 IQKI--PIEVEKLIHLSKLDLSYNFLGKEMPFQIC-----NMKSLEKLNLCHNNLS 624
              +       + I L  L L YN +  +    +       M  L  L L  N  S
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 60/389 (15%), Positives = 104/389 (26%), Gaps = 110/389 (28%)

Query: 223 LGNLKSISTLDLSKNQLSG----SIPFSLGNLSNLGILYLYSNSLSGP----IPSVIGNL 274
           +    SI    L  + ++     S+   L    ++  + L  N++       +   I + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
           + L   + S+             L  L                 L     L  + L  N 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRLSDNA 105

Query: 335 L--NGVIP--SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHS 390
                  P    +   + L  LYL+NNG                                
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG-------------------------------- 133

Query: 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK----VYEAFGYHPNLT 446
              L       +        + K  +N   L  +   +N L         + F  H  L 
Sbjct: 134 ---LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 447 FLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK----LQVLDISSNH 502
            + + QN    E                        I   + E       L+VLD+  N 
Sbjct: 191 TVKMVQNGIRPE-----------------------GIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 503 IVGEIPVQ-----LAKLFSLNKLILSLNQLS--GGMPF----ELGSLTELQYLDLSANKL 551
               +        L    +L +L L+   LS  G               LQ L L  N++
Sbjct: 228 F-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 552 RSWIPKSIGNLLK-----LRYLNLSNNQF 575
                +++  ++      L +L L+ N+F
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 54/366 (14%), Positives = 109/366 (29%), Gaps = 76/366 (20%)

Query: 199 LGNLSNLANFYLNNNLLFD----SIPLVLGNLKSISTLDLSKNQLSG----SIPFSLGNL 250
           +   S +    L  + +      S+  VL    S+  + LS N +       +  ++ + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQ----------LDLSENQLS--GSIPIS--LG 296
            +L I              +   L  LLQ          + LS+N        P+   L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 297 NLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYN 356
             + L  + L +N L           ++ + +   + +L   +     N   LR +    
Sbjct: 120 KHTPLEHLYLHNNGLGP---------QAGAKIARALQELA--VNKKAKNAPPLRSIICGR 168

Query: 357 NGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL-----SGPI 411
           N       E    +K   +    ++R           L  +    M +N +        +
Sbjct: 169 NRL-----ENGS-MKEWAKT-FQSHR----------LLHTV---KMVQNGIRPEGIEHLL 208

Query: 412 PKSLRNLTSLERVRFNQNNLSGK----VYEAFGYHPNLTFLDLSQNNFYGE------ISF 461
            + L     L+ +    N  +      +  A    PNL  L L+              +F
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFK-----LQVLDISSNHI--VGEIPVQLAKL 514
           +      L T  +  N I       +          L  L+++ N      ++  ++ ++
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

Query: 515 FSLNKL 520
           FS    
Sbjct: 329 FSTRGR 334

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 45/389 (11%), Positives = 95/389 (24%), Gaps = 85/389 (21%)

Query: 109 LVHLNLSFNIV----FGTIPPQVGNLSKLQHLDLGNNQLTG----VIPPEIGHLNQLRSL 160
           +   +L  + +      ++   +     ++ + L  N +       +   I     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD--- 217
            F             G++      AL        +  +L     L    L++N       
Sbjct: 66  EFSDIF--------TGRVKDEIPEALRL------LLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 218 -SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
             +   L     +  L L  N            L       +        +     N   
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNG-----------LGPQAGAKIARALQELAVNKKAKNAPP 160

Query: 277 LLQLDLSENQLS--GSIPIS--LGNLSSLTVMSLFSNSL-----SSFIPPILGNLKSLSA 327
           L  +    N+L        +    +   L  + +  N +        +   L   + L  
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 328 LGLHINQLNG----VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY--LKSIFE-LELCT 380
           L L  N         +  ++ +  NLR L L +          +      ++ +      
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--------LSARGAAAVVDAFSKLE 272

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGP----IPKSLR-NLTSLERVRFNQNNLS--- 432
           N            L  L    +  N +       +   +   +  L  +  N N  S   
Sbjct: 273 NI----------GLQTL---RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319

Query: 433 ---GKVYEAFGYHPNLTFLDLSQNNFYGE 458
               ++ E F         +L       +
Sbjct: 320 DVVDEIREVFSTRGRGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 44/290 (15%), Positives = 80/290 (27%), Gaps = 74/290 (25%)

Query: 84  IISINLSSMGLNGTLQEF---------AFSSFPHLVHLNLSFNIVFG-----TIPPQVGN 129
           +     S +       E          A    P L  + LS N  FG      +   +  
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSK 120

Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
            + L+HL L NN L                                    +   L     
Sbjct: 121 HTPLEHLYLHNNGLG-----------------------------PQAGAKIARALQELAV 151

Query: 190 NLYGPIPPSLGNLSNLANFYLNNNLLFD----SIPLVLGNLKSISTLDLSKNQL-----S 240
           N          N   L +     N L +           + + + T+ + +N +      
Sbjct: 152 NK------KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 241 GSIPFSLGNLSNLGILYLYSNSLSGP----IPSVIGNLESLLQLDLSENQLS--GSIPIS 294
             +   L     L +L L  N+ +      +   + +  +L +L L++  LS  G+  + 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 295 ----LGNLSSLTVMSLFSNSLS-----SFIPPILGNLKSLSALGLHINQL 335
                     L  + L  N +      +    I   +  L  L L+ N+ 
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 35/169 (20%)

Query: 515 FSLNKLILSLNQLSG----GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK----LR 566
           FS+    L L+ ++      +   L     ++ + LS N + +   + +   +     L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 567 YLNLSNNQFIQKIPIEVE----------KLIHLSKLDLSYNFLGKEMPFQIC----NMKS 612
               S+    +      E          K   L  + LS N  G      +         
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 613 LEKLNLCHNNLS-------------GFIPRCFEGMHNLSHIDISYNELQ 648
           LE L L +N L                + +  +    L  I    N L+
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSS 313
            L L SN L      V   L  L +L LS+NQ+  S+P  +   L+ LT++ L  N L S
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS 90

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
               +   L  L  L L  NQL  V       L++L+ ++L+ N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP---FSLGNLS 251
           IP S   L       L +N L      V   L  ++ L LS+NQ+  S+P   F    L+
Sbjct: 26  IPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFD--KLT 76

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSN 309
            L ILYL+ N L      V   L  L +L L  NQL  S+P      L+SL  + L +N
Sbjct: 77  KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
           +    L+L +NKL+S        L +L  L+LS NQ IQ +P  V +KL  L+ L L  N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86

Query: 598 FLGKEMPFQIC-NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
            L + +P  +   +  L++L L  N L       F+ + +L  I +  N
Sbjct: 87  KL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 36/134 (26%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
             L+L +N+L  +       L QL  L    NQ+           SL             
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------SL------------- 67

Query: 194 PIPP----SLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPF-SL 247
             P      L  L+ L   YL+ N L  S+P  V   L  +  L L  NQL  S+P    
Sbjct: 68  --PDGVFDKLTKLTIL---YLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIF 120

Query: 248 GNLSNLGILYLYSN 261
             L++L  ++L++N
Sbjct: 121 DRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
             L++ SN +         KL  L KL LS NQ+          LT+L  L L  NKL+S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 554 WIPKSI-GNLLKLRYLNLSNNQFIQKIP 580
            +P  +   L +L+ L L  NQ ++ +P
Sbjct: 91  -LPNGVFDKLTQLKELALDTNQ-LKSVP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 97  TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHL 154
           +L    F     L  L+LS N    ++P  V   L+KL  L L  N+L   +P  +   L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKL 99

Query: 155 NQLRSLYFDVNQL 167
            QL+ L  D NQL
Sbjct: 100 TQLKELALDTNQL 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 255 ILYLYSNSLSG-PIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLS 312
            L L  N L       + G L  L++L+L  NQL+  I  +     S +  + L  N + 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 313 SFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNN 357
                +   L  L  L L+ NQ++ V+P S  +L++L  L L +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 232 LDLSKNQLSGSIPFSL-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
           L L+ N+L       L G L +L  L L  N L+G  P+       + +L L EN++   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 291 IPISL-GNLSSLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQLN 336
           I   +   L  L  ++L+ N +S  + P    +L SL++L L  N  N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 519 KLILSLNQLSGGMPFEL-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
           +L+L+ N+L       L G L  L  L+L  N+L    P +      ++ L L  N+ I+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IK 91

Query: 578 KIPIEV-EKLIHLSKLDLSYNFLGKEMP---FQICNMKSLEKLNLCHNN 622
           +I  ++   L  L  L+L  N +   +    F+  ++ SL  LNL  +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFE--HLNSLTSLNL-ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 17/121 (14%)

Query: 195 IPPSLGNLSNLANFYLNNNLLFDSIPL--VLGNLKSISTLDLSKNQLSGSIP---FSLGN 249
           IP     L       LN+N L   I    + G L  +  L+L +NQL+  I    F    
Sbjct: 27  IPLHTTEL------LLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFE--G 76

Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFS 308
            S++  L L  N +      +   L  L  L+L +NQ+S  +   S  +L+SLT ++L S
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS 135

Query: 309 N 309
           N
Sbjct: 136 N 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 539 TELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
                L L+ N+L       + G L  L  L L  NQ +  I     E   H+ +L L  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE 87

Query: 597 NFLGKEMP---FQICNMKSLEKLNLCHNNLSGFIPR-CFEGMHNLSHIDISYN 645
           N + KE+    F    +  L+ LNL  N +S  +    FE +++L+ ++++ N
Sbjct: 88  NKI-KEISNKMFL--GLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 492 KLQVLDISSNHIVGEIPVQL-AKLFSLNKLILSLNQLS---GGMPFELGSLTELQYLDLS 547
            L  L++  N +   I          + +L L  N++      M F    L +L+ L+L 
Sbjct: 55  HLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKM-FL--GLHQLKTLNLY 110

Query: 548 ANKLRSWIPKSI-GNLLKLRYLNLSNNQF 575
            N++   +      +L  L  LNL++N F
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 112 LNLSFNIVFGTIPPQ--VGNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRSLYFDVNQLH 168
           L L+ N   G I      G L  L  L+L  NQLTG I P      + ++ L    N++ 
Sbjct: 34  LLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK 91

Query: 169 GPIPQEI-GQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNN 213
             I  ++   L  +  L L ++N    + P S  +L++L +  L +N
Sbjct: 92  E-ISNKMFLGLHQLKTLNL-YDNQISCVMPGSFEHLNSLTSLNLASN 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
           +L   +  +   M   L +L   ++L LS N +   I  S+  +  LR L+L  N  I+K
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNL-IKK 84

Query: 579 IPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RCFEGMHNL 637
           I         L +L +SYN +      +   + +L  L + +N ++ +        +  L
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 638 SHIDISYNELQGPIPNSTTFKDAR 661
             + ++ N L      +    + R
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYR 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS---GGMPFELGSLTELQYLDLSANKLR 552
           L      I  ++   L+ L +   L LS N +          L  +  L+ L L  N ++
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK 83

Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMK 611
             I         L  L +S NQ I  +   +EKL++L  L +S N +        +  + 
Sbjct: 84  K-IENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 612 SLEKLNLCHN 621
            LE L L  N
Sbjct: 141 KLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 21/174 (12%)

Query: 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
            V L+         +   +  L   +HL L  N +  +    +  +  LR L    N + 
Sbjct: 27  KVELHGMIP-PIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK 83

Query: 169 GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLK 227
             I         + EL + +N +   +   +  L NL   Y++NN + +   +  L  L 
Sbjct: 84  K-IENLDAVADTLEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
            +  L L+ N L                    +N+ S     V+  L +L +LD
Sbjct: 141 KLEDLLLAGNPLYNDYKE--------------NNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 41/205 (20%)

Query: 401 NMCENHLSGPIPKSLRNLTSLERVR-FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI 459
              ++ +     +     T  E+V          K+            L LS NN     
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----- 59

Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK 519
                        I  ++++SG           L++L +  N I  +I    A   +L +
Sbjct: 60  -------------IEKISSLSGME--------NLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 520 LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP-KSIGNLLKLRYLNLSNNQFIQK 578
           L +S NQ++     E   L  L+ L +S NK+ +W     +  L KL  L L+ N     
Sbjct: 98  LWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 579 IPIE----------VEKLIHLSKLD 593
                         V++L +L KLD
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV--LGNLKSISTLDLSKNQLS 240
           EL      +   +  +L  L    +  L+ N     I  +  L  ++++  L L +N + 
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSLGRNLIK 83

Query: 241 GSIPFSLGNLSNLGILYLYSN---SLSGPIPSVIGNLESLLQLDLSENQLSGSIPIS-LG 296
             I         L  L++  N   SLSG     I  L +L  L +S N+++    I  L 
Sbjct: 84  -KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 297 NLSSLTVMSLFSNSLSSFIPP 317
            L  L  + L  N L +    
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 546 LSANKLRSWIPKSIGNLLKLRYLNLSNN-QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
              + +R +  +      +   + L      I+K+   +  L     L LS N + K   
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--- 62

Query: 605 FQICN---MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
             I +   M++L  L+L  N +   I         L  + ISYN++ 
Sbjct: 63  --ISSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA 106

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL-VLGNLKSISTLDLSKNQLSGSIPF 245
           C  +        L    NL   Y+ N      + L  L  L  +  L + K+ L    P 
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
           +      L  L L  N+L       +  L SL +L LS N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP-FSLGNLSNLGILYLYSNSLSGPIPSV 270
                      L   ++++ L +   Q    +    L  L  L  L +  + L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSL 311
                 L +L+LS N L  S+        SL  + L  N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFE-LGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
           +    L    +L +L +   Q    +    L  L EL+ L +  + LR   P +     +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           L  LNLS N  ++ +  +  + + L +L LS N L
Sbjct: 82  LSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 23/94 (24%)

Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
               +     L  L + N Q +Q +                           +  +  L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLE-----------------------LRDLRGLGELR 59

Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L +  + L    P  F     LS +++S+N L+
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPP-SLGNLSNLANFYLNNNLLFDSI-PLV 222
                     +     + EL + +      +    L  L  L N  +  + L   + P  
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDA 75

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL 263
                 +S L+LS N L  S+ +      +L  L L  N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLNQLRS 159
                 +L  L +        +  +    L +L++L +  + L   + P+      +L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 160 LYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
           L    N L     + +  LSL  EL L  N L
Sbjct: 85  LNLSFNALESLSWKTVQGLSL-QELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 379 CTNRLRGGIPHSI---GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV 435
           CT        H +    NLTEL + N    HL     + LR L  L  +   ++ L    
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
            +AF + P L+ L+LS N      S +W+    L    + ++ 
Sbjct: 73  PDAFHFTPRLSRLNLSFNAL---ESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 285 NQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQLNGVIPSSI 343
              +      L    +LT + + +      +    L  L  L  L +  + L  V P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR 384
                L  L L  N     +  +     S+ EL L  N L 
Sbjct: 77  HFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 82  ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGN 140
           E +  + + +      L+         L +L +  +     + P       +L  L+L  
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89

Query: 141 NQLTGVIPPEIGHLNQLRSLYFDVNQLH 168
           N L   +  +      L+ L    N LH
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 122 TIPPQVGNLSKLQHLDLGNNQLTGVIPPE-IGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180
                +     L  L + N Q    +    +  L +LR+L    + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNN 213
           ++ L L  N L   +        +L    L+ N
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGN 113

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
           + L+A  +         N ++ R L+L   + I  I      L     +D S N + K  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 604 PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            F    ++ L+ L + +N +        + + +L+ + ++ N L 
Sbjct: 59  GFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD 593
           +  +    + LDL   K+   I      L +   ++ S+N+ I+K+      L  L  L 
Sbjct: 14  QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLL 70

Query: 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQ 648
           ++ N + +        +  L +L L +N+L           + +L+++ I  N + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551
           +   +D S N I  ++      L  L  L+++ N++         +L +L  L L+ N L
Sbjct: 43  QFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 552 RSW-IPKSIGNLLKLRYLNLSNNQFIQK 578
                   + +L  L YL +  N    K
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
           + L+  ++      Q  N  + + LDL   ++  VI      L+Q  ++ F  N++    
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--- 55

Query: 172 PQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIST 231
                   L                     L  L    +NNN +      +   L  ++ 
Sbjct: 56  -------KLDG----------------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 232 LDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI-------PSVIGNLESLLQLD 281
           L L+ N L        L +L +L  L +  N    P+         VI  +  +  LD
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN----PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 273 NLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
           N     +LDL   ++   I      L     +    N +          L+ L  L ++ 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNN 73

Query: 333 NQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
           N++  +       L +L  L L NN        ++  L S+  L 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVEL--GDLDPLASLKSLT 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 50/250 (20%), Positives = 89/250 (35%), Gaps = 39/250 (15%)

Query: 437 EAFGYHPNLTFLDLSQNNFYGE----ISFNWR-NFPKLGTFIVSMNNISGSIPLEIGESF 491
           E       +T LDLS NN Y      +   +      + +  +S N++      E+ +  
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 492 K-----LQVLDISSNHIVGEIPVQLAKLF-----SLNKLILSLNQLSGGMPFELGSL--- 538
                 +  L++S N +  +   +L K       ++  L L  N  S     E       
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 539 --TELQYLDLSANKLRSWIPKSIGNLLK-----LRYLNLSNNQFIQKIPIEVEKLI---- 587
               +  L+L  N L       +  +L      +  LNL  N    K   E+ K +    
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 588 -HLSKLDLSYNFLGKEMPFQIC-----NMKSLEKLNLCHNNLSG----FIPRCFEGMHNL 637
             ++ LDLS N LG +   ++          +  LNLC N L G     +    + + +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 638 SHIDISYNEL 647
             + + Y+ +
Sbjct: 256 QTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 43/279 (15%), Positives = 91/279 (32%), Gaps = 48/279 (17%)

Query: 417 NLTSLERVRFNQNNLSGKVYEAFGY-----HPNLTFLDLSQNNFYGE----ISFNWRNFP 467
              ++  +  + N LS K  +            +T LDL  N+F  +        + N P
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 468 K-LGTFIVSMNNISGSIPLEIGESFK-----LQVLDISSNHIVGEIPVQLAKLF-----S 516
             + +  +  N++      E+ +        +  L++  N++  +   +LAK       S
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 517 LNKLILSLNQLSGGMPFELGSL-----TELQYLDLSANKLRSWIPKSIGNLLK----LRY 567
           +  L LS N L      EL  +       +  L+L  N L     +++  L      L+ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 568 LNLSNNQFIQKIPIEVEKLI-------HLSKLDLSYNFLGKEMPFQICNM-----KSLEK 615
           + L  +        + + L         +  +D +   +       I N+        + 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 616 LNLCHNNLSGFIPRCFEGMHNLS------HIDISYNELQ 648
            +L +  L  F  +    + +L+          +   L 
Sbjct: 318 PSLLNQCLI-FAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 61/380 (16%), Positives = 119/380 (31%), Gaps = 84/380 (22%)

Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLG-----NLSSLTVMSLFSNSLSS-----FIP 316
           +         +  LDLS N L     + L        +S+T ++L  NSL        + 
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 317 PILGNLKSLSALGLHINQLNGVIPSSIGNL-----SNLRLLYLYNNGFYGFVPEEIGYLK 371
            +     ++++L L  N L+      +          + +L L  N F            
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS----------- 122

Query: 372 SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP----IPKSLRNL-TSLERVRF 426
                   ++  +    +   ++T L   N+  N L       + + L  +  ++  +  
Sbjct: 123 -----SKSSSEFKQAFSNLPASITSL---NLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 427 NQNNLSGKVYEAFG-----YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
             NNL+ K              ++T LDLS N    +      ++ +L     S+ N   
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPN--- 225

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK----LILSLNQLSGGMPFELGS 537
                      +  L++  N + G     L  L    K    + L  + +      +  +
Sbjct: 226 ----------HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 538 LTE-------LQYLDLSANKLRSWIPKSIGNLLK-----LRYLNLSNN--QFIQKIPIEV 583
           L         +  +D +  ++       I NL++         +L N    F QK    +
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI 335

Query: 584 EKL---IHLSKLDLSYNFLG 600
           E L     L +   +   L 
Sbjct: 336 EDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 45/303 (14%), Positives = 89/303 (29%), Gaps = 68/303 (22%)

Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQ---------VGNLSKLQHLDLGNNQLT----GVIP 148
             S    +  L+LS N     +                + +  L+L  N L       + 
Sbjct: 17  FTSIPHGVTSLDLSLN----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 149 PEIGHLN-QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207
             +  +   + SL    N L      E+ +        L                  +  
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVK-------TLAAIP------------FTITV 113

Query: 208 FYLNNNLLFDS-----IPLVLGNLKSISTLDLSKNQLS--GSIPFSLG---NLSNLGILY 257
             L  N                   SI++L+L  N L    S           +N+  L 
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 258 LYSNSLSGP----IPSVIGNL-ESLLQLDLSENQL--SGSIPIS---LGNLSSLTVMSLF 307
           L  N+L+      +   + ++  S+  LDLS N L       ++       + +  ++L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 308 SNSLSS----FIPPILGNLKSLSALGLHINQLNGV-------IPSSIGNLSNLRLLYLYN 356
            N L       +  +  +LK L  + L  + +  +       + ++  N+  + L+    
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 357 NGF 359
              
Sbjct: 294 KEI 296

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 516 SLNKLILSLNQLSGGMPFELGS-LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
           ++ +L+L   + + G    L +    L++L L    L S    ++  L KL+ L LS N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82

Query: 575 FIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSLEKLNLCHN---NLSGFIPRC 630
               + +  EKL +L+ L+LS N L      + +  ++ L+ L+L +    NL+ +    
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 631 FEGMHNLSHID 641
           F+ +  L+++D
Sbjct: 143 FKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFS 516
            +    R    +   ++     +      +   F  L+ L + +  ++  +   L KL  
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPK 72

Query: 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNN 573
           L KL LS N++ GG+      L  L +L+LS NKL+     + +  L  L+ L+L N 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 561 NLLKLRYLNLSNNQF-IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
               +R L L N +    KI     + ++L  L L    L          +  L+KL L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKKLELS 79

Query: 620 HNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            N + G +    E + NL+H+++S N+L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 154 LNQLRSLYFDVNQLH-GPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN 212
              +R L  D  + + G I     +   +  L+L +  L      +L  L  L    L+ 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSE 80

Query: 213 NLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSN---SLSGPIP 268
           N +F  + ++   L +++ L+LS N+L   S    L  L  L  L L++    +L+    
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140

Query: 269 SVIGNLESLLQLDLSENQ 286
           SV   L  L  LD  + +
Sbjct: 141 SVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 201 NLSNLANFYL-NNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLY 259
             + +    L N       I  +     ++  L L    L  S+  +L  L  L  L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79

Query: 260 SNSLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLFSNSLSS 313
            N + G +  +   L +L  L+LS N+L   S    L  L  L  + LF+  +++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 273 NLESLLQLDLSENQLS-GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
              ++ +L L   + + G I        +L  +SL +  L S     L  L  L  L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 332 INQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            N++ G +      L NL  L L  N         +  LK +  L+
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI--STLEPLKKLECLK 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 321 NLKSLSALGLHINQLN-GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELC 379
              ++  L L   + N G I        NL  L L N G        +  L  + +LEL 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 380 TNRLRGGIPHSIGNLTELVLVNMCENHLSGP-IPKSLRNLTSLERVRFNQN---NLSGKV 435
            NR+ GG+      L  L  +N+  N L      + L+ L  L+ +        NL+   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 436 YEAFGYHPNLTFLD 449
              F   P LT+LD
Sbjct: 140 ESVFKLLPQLTYLD 153

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 537 SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
            + EL   +  +N+ +  +        +L +L+  N   +  I   + KL  L KL+LS 
Sbjct: 18  DVKELVLDNSRSNEGK--LEGLTDEFEELEFLSTINVG-LTSIAN-LPKLNKLKKLELSD 73

Query: 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNEL 647
           N +   +        +L  LNL  N +         + + NL  +D+   E+
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFSLNKL 520
             R    +   ++  +  +      + + F +L+ L   +  +   I   L KL  L KL
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNN 573
            LS N++SGG+         L +L+LS NK++     + +  L  L+ L+L N 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 561 NLLKLRYLNLSNNQF-IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
               ++ L L N++    K+    ++   L  L      L          +  L+KL L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP--KLNKLKKLELS 72

Query: 620 HNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            N +SG +    E   NL+H+++S N+++
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 153 HLNQLRSLYFDVNQL-HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN---F 208
             + ++ L  D ++   G +     +   +  L+  +  L      S+ NL  L      
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI 267
            L++N +   + ++     +++ L+LS N++   S    L  L NL  L L++  ++   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 268 ---PSVIGNLESLLQLD 281
               +V   L  L  LD
Sbjct: 130 DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 201 NLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLY 259
             S++    L+N+   +  +  +    + +  L      L+ SI  +L  L+ L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 260 SNSLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLFSN 309
            N +SG +  +     +L  L+LS N++   S    L  L +L  + LF+ 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 273 NLESLLQLDLSENQLS-GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
               + +L L  ++ + G +         L  +S  +  L+S     L  L  L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 332 INQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377
            N+++G +        NL  L L  N         I  LK +  L+
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL--STIEPLKKLENLK 116

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 492 KLQVLDISSNHIVGEIPVQLA--KLFSLNKLILSLNQLSGGMP---------FELGSLTE 540
            L+ L+I S  +   +   +    L +L KL+L +     G           F       
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 541 LQYLDLSANKLRSWIPKSIGN---LLKLRYLNLSNNQF----IQKIPIEVEKLIHLSKLD 593
           L++L +   + ++ + +       L +L  +++S         + +   V+K+ HL  ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 594 LSYNFLGKEM 603
           + YN+L  EM
Sbjct: 314 MKYNYLSDEM 323

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 3e-06
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS--LTELQYLDL--- 546
            L  L I   + +         L     L +    L   +  ++    L  L+ L L   
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNL---KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG 229

Query: 547 SANKLRSWIPKSIGNLL------KLRYLNLSNNQFIQKIPI---EVEKLIHLSKLDLSYN 597
             +            L        L++L + + +    +     E + L  L  +D+S  
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 598 FLG----KEMPFQICNMKSLEKLNLCHNNLS 624
            L     + +   +  +K L+ +N+ +N LS
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 21/166 (12%)

Query: 500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI 559
           S     ++   L  +  LN L +        +         L+ L++ +  L   + + I
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213

Query: 560 G--NLLKLRYLNLSNNQFIQKIPIEVEKLI---------HLSKLDLSYNFLGKEMPFQIC 608
              +L  L  L L           ++             +L  L +        +     
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 609 N---MKSLEKLNLCHNNLSGF----IPRCFEGMHNLSHIDISYNEL 647
               +  LE +++    L+      +    + + +L  I++ YN L
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 17/145 (11%)

Query: 64  SKTKINPCAWVGISCNQAERIISINLSSMGL-NGTLQEFAFSSFPHLVHLNLSF---NIV 119
           +  KI     + I       + S+ + S GL +  +++   S  P+L  L L     +  
Sbjct: 175 NNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG 234

Query: 120 FGTIPPQV------GNLSKLQHLDLGNNQLTGVIPPEIGH---LNQLRSLYFDVNQLHG- 169
           F                  L+ L + + +   V+         L QL ++      L   
Sbjct: 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294

Query: 170 ---PIPQEIGQLSLINELALCHNNL 191
               +   + ++  +  + + +N L
Sbjct: 295 GARLLLDHVDKIKHLKFINMKYNYL 319

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 27/127 (21%)

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
           T+D S   L+ S+P   G  +   +LYLY N ++   P V   L  L +LDL  NQL+  
Sbjct: 13  TVDCSGKSLA-SVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-V 68

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           +P                         +   L  L+ L L+ NQL  +   +  NL +L 
Sbjct: 69  LP-----------------------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105

Query: 351 LLYLYNN 357
            ++L NN
Sbjct: 106 HIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDL 594
           G  T  Q L L  N++    P     L +L  L+L NNQ +  +P  V +KL  L++L L
Sbjct: 27  GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85

Query: 595 SYNFLGKEMP---FQICNMKSLEKLNLCHNN 622
           + N L K +P   F   N+KSL  + L  NN
Sbjct: 86  NDNQL-KSIPRGAFD--NLKSLTHIWL-LNN 112

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 64/506 (12%), Positives = 136/506 (26%), Gaps = 77/506 (15%)

Query: 78  CNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIV----FGTIPPQVGNLSKL 133
                    +     G      E   SS+  L  + L   +V       I     +    
Sbjct: 76  KPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI---AKSFKNF 132

Query: 134 QHLDLGN-NQLTGVIPPEIG-HLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
           + L L +    +      I      L+ L    + +       +                
Sbjct: 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP------------ 180

Query: 192 YGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLS 251
                 +  +L +L    L + + F ++  ++    ++ +L L++      +   L    
Sbjct: 181 -----DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSL 311
            L  L     +                        +   + ++L     L  +S F +++
Sbjct: 236 QLEELGTGGYT------------------AEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 312 SSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYL 370
            +++P +      L+ L L    +    +   +     L+ L++ +      +       
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 371 KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN 430
           K + EL +        +      LTE  LV++                  LE V +    
Sbjct: 338 KDLRELRVF--PSEPFVMEPNVALTEQGLVSVS------------MGCPKLESVLYFCRQ 383

Query: 431 LSGKVYEAFGYH-PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
           ++         + PN+T   L                                    I E
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLT--------------LEPLDIGFGAIVE 429

Query: 490 SFK-LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG-GMPFELGSLTELQYLDLS 547
             K L+ L +S                 +  L ++    S  GM   L     L+ L++ 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 548 ANKLRS-WIPKSIGNLLKLRYLNLSN 572
                   +  +   L  +R L +S+
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 54/428 (12%), Positives = 131/428 (30%), Gaps = 45/428 (10%)

Query: 212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG-NLSNLGILYLYSNSL--SGPIP 268
              ++  I  +  +   +  + L +  ++      +  +  N  +L L S     +  + 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 269 SVIGNLESLLQLDLSENQLSG-------SIPISLGNLSSLTVMSLFSNSLSSFIPPILGN 321
           ++     +L +LDL E+ +           P +  +L SL +  L S    S +  ++  
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 322 LKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLY------NNGFYGFVPEEIGYLKSIFE 375
             +L +L L+       + + +     L  L             Y  +   +   K +  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP-IPKSLRNLTSLERVRFNQNNLSGK 434
           L    + +   +P      + L  +N+    +    + K L     L+R+    + +   
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDA 328

Query: 435 VYEAFGYH-PNLTFLDLSQNNFYGEISFNW----------RNFPKLGTFIVSMNNISGSI 483
             E       +L  L +  +  +                    PKL + +     ++ + 
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388

Query: 484 PLEIGESF-KLQVLDISSNHIVGEIPVQ-------LAKLFSLNKLILSLNQLSG-----G 530
            + I  +   +    +          +           +    K +  L+ LSG      
Sbjct: 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS-LSGLLTDKV 447

Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIG-NLLKLRYLNLSNNQFI-QKIPIEVEKLIH 588
             +      +++ L ++           +      LR L + +  F  + +     KL  
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507

Query: 589 LSKLDLSY 596
           +  L +S 
Sbjct: 508 MRSLWMSS 515

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
           L L+ NQ++   P    +L NL  LY  SN L+     V   L  L QLDL++N L  SI
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI 96

Query: 292 PI-SLGNLSSLTVMSLFSN 309
           P  +  NL SLT + L++N
Sbjct: 97  PRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 27/127 (21%)

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
            ++    +L+ S+P   G  ++   L+L +N ++   P V  +L +L QL  + N+L+ +
Sbjct: 16  LVNCQNIRLA-SVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           IP                         +   L  L+ L L+ N L  +   +  NL +L 
Sbjct: 72  IP-----------------------TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108

Query: 351 LLYLYNN 357
            +YLYNN
Sbjct: 109 HIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDL 594
           G  T+ Q L L+ N++    P    +L+ L+ L  ++N+ +  IP  V +KL  L++LDL
Sbjct: 30  GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDL 88

Query: 595 SYNFLGKEMP---FQICNMKSLEKLNLCHNN 622
           + N L K +P   F   N+KSL  + L +NN
Sbjct: 89  NDNHL-KSIPRGAFD--NLKSLTHIYL-YNN 115

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 64/402 (15%), Positives = 118/402 (29%), Gaps = 54/402 (13%)

Query: 72  AWVGISCNQAERIISINLSSMGL-NGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQ--VG 128
            WV    N   ++ S++   M + +  L   A +    L  L L     F T      V 
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHL----NQLRSLYFDVNQLHGPIPQEIGQLSLINEL 184
           +  K++ L +  +  +      +  L      L  L F + +              I+  
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-----------ISPK 210

Query: 185 ALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP 244
            L        I  +  +L ++        L          NL+      L+++       
Sbjct: 211 DLET------IARNCRSLVSV-KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263

Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL----GNLSS 300
            +L     L  L L     +  +P +      + +LDL    L      +L     NL  
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG---------NLSNLRL 351
           L   ++  +     +      LK L        Q        +              L  
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 352 LYLYNNGFYGFVPEEIG-YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
           + +Y +       E IG YLK++ +  L        +      +T+L L     ++    
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLV-------LLDREERITDLPL-----DNGVRS 430

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFG-YHPNLTFLDLS 451
           +    + L         Q  L+       G Y PN+ ++ L 
Sbjct: 431 LLIGCKKLRRF-AFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 59/476 (12%), Positives = 146/476 (30%), Gaps = 54/476 (11%)

Query: 212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI 271
                 +   +     ++ +L L      G    ++ NL         +  ++     + 
Sbjct: 58  ALCYTATPDRLSRRFPNLRSLKLK-----GKPRAAMFNLIPENWGGYVTPWVT----EIS 108

Query: 272 GNLESLLQLDLSENQLS--GSIPISLGNLSSLTVMSLFSNSL--SSFIPPILGNLKSLSA 327
            NL  L  +      +S      ++      L  + L   S   +  +  I+ + + +  
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 328 LGLHINQLNGVIPSSIG----NLSNLRLLYLYNNGFYGFVPEEIGYL----KSIFELEL- 378
           L +  +  +      +     + ++L +L  Y   F    P+++  +    +S+  +++ 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 379 -CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
                   G   +  NL E    ++ E+        +L     L R+  +    +  +  
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPI 287

Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNW-RNFPKLGTFIVSMNNISGSIPLEIGESFK-LQV 495
            F +   +  LDL       E      +  P L       N I       + +  K L+ 
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346

Query: 496 LDISSNHIVGEIPVQLAKL------------FSLNKLILSLNQLS----GGMPFELGSLT 539
           L I        +  +   +              L  + + ++ ++      +   L +L 
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 540 ELQYLDLSANKLRSWIPKSIG------NLLKLRYLNLSNN-QFIQKIPIEV--EKLIHLS 590
           + + + L   +  + +P   G         KLR          +  + +    +   ++ 
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 591 KLDLSYNFLGKEMPFQIC-NMKSLEKLNLCHNNLS-GFIPRCFEGMHNLSHIDISY 644
            + L Y     E   +      +L+KL +     S   I      + +L ++ +  
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 492 KLQVLDISSNHIVGEIPVQLAK-LFSLNKLILSLNQLSGGMPFELGSL-----TELQYLD 545
            L  ++++S  +       L        KL L LN L      +L  L      ++  L 
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 546 LSANKLRSWIPKSIGNLLK----LRYLNLSNNQF----IQKIPIEVEKLIHLSKLDLSYN 597
           LS N L +     +   L     + +L+L +       ++ +  ++++   L +L+++YN
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221

Query: 598 FLGKEMPFQICNM----KSLEKLNLCHNNLS 624
             G      +        SLE L+L  N LS
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELS 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	725
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.96
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.76
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.66
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	93.32

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.1e-92  Score=818.16  Aligned_cols=641  Identities=31%  Similarity=0.484  Sum_probs=544.3

Q ss_pred             HhhccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccc
Q 041178           18 SHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGT   97 (725)
Q Consensus        18 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~   97 (725)
                      +.+++++.++|++||++||+++.+ +. .+++|+   .+           +|||+|.||+|+ .+||++++|++.++.|.
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~---~~-----------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~   65 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLPD-KN-LLPDWS---SN-----------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVG   65 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCSC-TT-SSTTCC---TT-----------SCGGGSTTEEEE-TTEEEEEECTTSCCCEE
T ss_pred             cCccccCCHHHHHHHHHHHhhCCC-cc-cccCCC---CC-----------CCCcCCcceEEC-CCcEEEEECCCCCcCCc
Confidence            445566788999999999999974 44 889995   33           689999999998 79999999999999886


Q ss_pred             ---cCC----------------------cccCCCCCCcEEECCCCCCCccCch--hccCCCCCCEEECCCCCCCCCCCcc
Q 041178           98 ---LQE----------------------FAFSSFPHLVHLNLSFNIVFGTIPP--QVGNLSKLQHLDLGNNQLTGVIPPE  150 (725)
Q Consensus        98 ---~~~----------------------~~~~~l~~L~~L~Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~  150 (725)
                         +++                      ..++.+++|++|+|++|.+.|.+|.  .++++++|++|++++|.+.+.+|..
T Consensus        66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  145 (768)
T 3rgz_A           66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS  145 (768)
T ss_dssp             HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred             cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence               432                      3678889999999999999998888  8999999999999999998888877


Q ss_pred             C-cCCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCC
Q 041178          151 I-GHLNQLRSLYFDVNQLHGPIPQE---IGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL  226 (725)
Q Consensus       151 ~-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  226 (725)
                      + .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..|.  ..+++|++|++++|.+.+.+|. ++++
T Consensus       146 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l  222 (768)
T 3rgz_A          146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDC  222 (768)
T ss_dssp             SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred             HhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence            6 78999999999999998887776   78888899999988888876553  7888999999999998887777 8889


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCC-CCccEEE
Q 041178          227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNL-SSLTVMS  305 (725)
Q Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~  305 (725)
                      ++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred             CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence            99999999999998888888889999999999999888877764  78888999999998888888888765 8899999


Q ss_pred             ccCCcCcccCcccccCCCcccccccccccccccCCcc-CcCCCCCCEEEccCCcCccCCcccccCCC-CCCEEECcCccc
Q 041178          306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS-IGNLSNLRLLYLYNNGFYGFVPEEIGYLK-SIFELELCTNRL  383 (725)
Q Consensus       306 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l  383 (725)
                      +++|.+++.+|..++.+++|++|++++|++.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+
T Consensus       301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence            9999888888888888888999999988888888765 88888888888888888888888877776 788888888888


Q ss_pred             cccccccccC--CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCc
Q 041178          384 RGGIPHSIGN--LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF  461 (725)
Q Consensus       384 ~~~~~~~~~~--l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  461 (725)
                      ++.+|..+..  +++|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|.
T Consensus       381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  460 (768)
T 3rgz_A          381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ  460 (768)
T ss_dssp             EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence            8777777666  67788888888888777777788888888888888888877777777788888888888888877777


Q ss_pred             cccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccc
Q 041178          462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL  541 (725)
Q Consensus       462 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  541 (725)
                      .+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+..+++|
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            77778888888888888887777777788888888888888887788878888888888888888877778778788888


Q ss_pred             ccccccccccccccccc---------------------------------------------------------------
Q 041178          542 QYLDLSANKLRSWIPKS---------------------------------------------------------------  558 (725)
Q Consensus       542 ~~L~Ls~n~l~~~~~~~---------------------------------------------------------------  558 (725)
                      ++|++++|+++|.+|..                                                               
T Consensus       541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  620 (768)
T 3rgz_A          541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY  620 (768)
T ss_dssp             CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred             CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence            88888887777655543                                                               


Q ss_pred             -------cccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccc
Q 041178          559 -------IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCF  631 (725)
Q Consensus       559 -------~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  631 (725)
                             +..+++|+.||+++|+++|.+|.+++++++|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..|
T Consensus       621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence                   4456789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEeCcCCCccccCCCCCCcCce---eccCCCCCCCCCCCCCCCCCCC
Q 041178          632 EGMHNLSHIDISYNELQGPIPNSTTFKDA---RMEGNKGLCGNIKGLPSCKAFT  682 (725)
Q Consensus       632 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~~~~~~~~c~~~~  682 (725)
                      ..+++|++||+++|+++|.||..++|.++   +|.||+++||.|.  +.|....
T Consensus       701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~  752 (768)
T 3rgz_A          701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSN  752 (768)
T ss_dssp             GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC
T ss_pred             hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCc
Confidence            99999999999999999999999998887   7999999999885  4787543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.2e-72  Score=653.61  Aligned_cols=560  Identities=31%  Similarity=0.425  Sum_probs=511.2

Q ss_pred             CCEEEEEcCCCCCccccCCc-ccCCCCCCcEEECCCCCCCccCchhc-cCCCCCCEEECCCCCCCCCCCcc---CcCCCC
Q 041178           82 ERIISINLSSMGLNGTLQEF-AFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPE---IGHLNQ  156 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~  156 (725)
                      .+++.++|+++.+.|.++.. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|..   +.++++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            57899999999999988731 78999999999999999999888776 89999999999999999888877   889999


Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccC
Q 041178          157 LRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK  236 (725)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  236 (725)
                      |++|++++|.+++..|.  .++++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..++.+++|++|++++
T Consensus       180 L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            99999999999877664  7899999999999999988777 99999999999999999999999999999999999999


Q ss_pred             CcCcccCCccccCCCCCCceeeccccccccCCccccCC-CCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178          237 NQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL-ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI  315 (725)
Q Consensus       237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  315 (725)
                      |.+++.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|++++|.+++.+
T Consensus       257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            9999887765  88999999999999999999888775 99999999999999999999999999999999999998777


Q ss_pred             ccc-ccCCCcccccccccccccccCCccCcCCC-CCCEEEccCCcCccCCcccccC--CCCCCEEECcCccccccccccc
Q 041178          316 PPI-LGNLKSLSALGLHINQLNGVIPSSIGNLS-NLRLLYLYNNGFYGFVPEEIGY--LKSIFELELCTNRLRGGIPHSI  391 (725)
Q Consensus       316 ~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~  391 (725)
                      |.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            765 88999999999999999999999888887 8999999999999888888776  7889999999999999999999


Q ss_pred             cCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcE
Q 041178          392 GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT  471 (725)
Q Consensus       392 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  471 (725)
                      ..+++|+.|++++|.+++.+|..+.++++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccc----------------
Q 041178          472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL----------------  535 (725)
Q Consensus       472 L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------------  535 (725)
                      |++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+                
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999988777543                


Q ss_pred             ------------------------------------------------------cCcccccccccccccccccccccccc
Q 041178          536 ------------------------------------------------------GSLTELQYLDLSANKLRSWIPKSIGN  561 (725)
Q Consensus       536 ------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~  561 (725)
                                                                            ..+++|++|||++|+++|.+|..+++
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                                  33577899999999999999999999


Q ss_pred             CCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178          562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID  641 (725)
Q Consensus       562 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  641 (725)
                      +++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++++++|++||+++|+++|.||.. ..+.++....
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~  733 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAK  733 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGG
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999975 3455566667


Q ss_pred             CcCCCc
Q 041178          642 ISYNEL  647 (725)
Q Consensus       642 ls~N~l  647 (725)
                      +.+|+-
T Consensus       734 ~~gN~~  739 (768)
T 3rgz_A          734 FLNNPG  739 (768)
T ss_dssp             GCSCTE
T ss_pred             hcCCch
Confidence            778873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.4e-63  Score=573.96  Aligned_cols=571  Identities=23%  Similarity=0.252  Sum_probs=478.5

Q ss_pred             CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178           82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY  161 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  161 (725)
                      .+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            578888998888876544 5788888999999998888888888888899999999999988865555788899999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccC--CCCCCCEEEccCCcC
Q 041178          162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLG--NLKSISTLDLSKNQL  239 (725)
Q Consensus       162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l  239 (725)
                      +++|.+++..|..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+.  .+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            999988877778888889999999999988888888888889999999999888777666543  558889999999988


Q ss_pred             cccCCccccCCCCCCceeeccccccccCCccc---cCCCCCCEEEccCCccccccCCCCCCCCC--ccEEEccCCcCccc
Q 041178          240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI---GNLESLLQLDLSENQLSGSIPISLGNLSS--LTVMSLFSNSLSSF  314 (725)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~  314 (725)
                      ++..|..+..+++|+.+++.++.+.+.....+   ...++|++|++++|.+++..|..+.+++.  |++|++++|.+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            88888888888888888888887654322211   13478999999999999888888887755  99999999999988


Q ss_pred             CcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc-----CCcc----cccCCCCCCEEECcCccccc
Q 041178          315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG-----FVPE----EIGYLKSIFELELCTNRLRG  385 (725)
Q Consensus       315 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~l~~n~l~~  385 (725)
                      .|..++.+++|++|++++|++.+..|..+..+++|+.|++++|...+     .+|.    .+..+++|++|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            88889999999999999999998888899999999999998876543     2332    67788899999999999998


Q ss_pred             cccccccCCCCCcEEEcCCCcCCCCC--CccccC--CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC-
Q 041178          386 GIPHSIGNLTELVLVNMCENHLSGPI--PKSLRN--LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS-  460 (725)
Q Consensus       386 ~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-  460 (725)
                      ..+..+..+++|+.|++++|.+....  +..+..  .++|+.|++++|++++..+..+..+++|++|++++|++.+.++ 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            88888999999999999998764432  223333  2589999999999999888899999999999999999988766 


Q ss_pred             ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccc--ccCchhhhcCCCCCeEeccCceecCCCCccccCc
Q 041178          461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIV--GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL  538 (725)
Q Consensus       461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  538 (725)
                      ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+..+++|++|++++|++++..+..+..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            57888999999999999998888888899999999999999886  5778889999999999999999998888888999


Q ss_pred             cccccccccccccccccc--------cccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCC
Q 041178          539 TELQYLDLSANKLRSWIP--------KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNM  610 (725)
Q Consensus       539 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  610 (725)
                      ++|++|++++|++++..+        ..+.++++|++|++++|+++...+..|.++++|++|+|++|.+++..+..|.++
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            999999999999887422        237888999999999999985555578999999999999999987777778899


Q ss_pred             CCCCEEeCCCCccccccCcccc-CCCCCCEEeCcCCCccccCCC
Q 041178          611 KSLEKLNLCHNNLSGFIPRCFE-GMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       611 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      ++|+.|++++|++++..|..|. .+++|+++++++|++.+.++.
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999988888777 788999999999999988775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.7e-62  Score=566.77  Aligned_cols=582  Identities=23%  Similarity=0.215  Sum_probs=511.0

Q ss_pred             EEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCc
Q 041178           87 INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ  166 (725)
Q Consensus        87 l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  166 (725)
                      +++++.++.. +| ..+.  +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus         9 ~~cs~~~L~~-ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            9 ADCSHLKLTQ-VP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EECCSSCCSS-CC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eECCCCCccc-cc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            4445555543 33 1222  789999999999999888889999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCcc
Q 041178          167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS  246 (725)
Q Consensus       167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  246 (725)
                      +++..+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            99666668999999999999999999888889999999999999999999998999999999999999999999877766


Q ss_pred             cc--CCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCC---CCCCCccEEEccCCcCcccCcccccC
Q 041178          247 LG--NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL---GNLSSLTVMSLFSNSLSSFIPPILGN  321 (725)
Q Consensus       247 l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~  321 (725)
                      +.  .+++|++|++++|.+++..|..+..+.+|+.+++.++.+.+.....+   ...++|+.|++++|.+++..|.++..
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence            54  56899999999999999999999999999999999988754322111   02478999999999999999999988


Q ss_pred             CCc--ccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc-----cccc----c
Q 041178          322 LKS--LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG-----GIPH----S  390 (725)
Q Consensus       322 l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~  390 (725)
                      ++.  |+.|++++|++.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+     .+|.    .
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence            865  9999999999999888999999999999999999999999999999999999999876554     2332    6


Q ss_pred             ccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc--cccccC--CCCCCEEeCcCCccccccCccccCC
Q 041178          391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGY--HPNLTFLDLSQNNFYGEISFNWRNF  466 (725)
Q Consensus       391 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~  466 (725)
                      +..+++|+.|++++|.+++..+..+.++++|+.|++++|.+....  ...|..  .++|+.|++++|++++..+..+..+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            888999999999999999999999999999999999999865332  233332  3689999999999999999999999


Q ss_pred             CCCcEEECCCCcccccCC-ccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec--CCCCccccCcccccc
Q 041178          467 PKLGTFIVSMNNISGSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS--GGMPFELGSLTELQY  543 (725)
Q Consensus       467 ~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~  543 (725)
                      ++|+.|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+..+++|++
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            999999999999998776 67899999999999999999999999999999999999999987  578899999999999


Q ss_pred             ccccccccccccccccccCCCCCEEeCCCCcCcccCh--------hhhhcccccccccccccccCccCcccccCCCCCCE
Q 041178          544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP--------IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK  615 (725)
Q Consensus       544 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  615 (725)
                      |++++|++++..+..|.++++|++|++++|++++..+        ..+.++++|++|+|++|.++...+..|.++++|++
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            9999999999888889999999999999999986422        23788999999999999998655567999999999


Q ss_pred             EeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC-----CCcCceeccCCCCCCCCC
Q 041178          616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS-----TTFKDARMEGNKGLCGNI  672 (725)
Q Consensus       616 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-----~~~~~~~~~gn~~lc~~~  672 (725)
                      |++++|++++..+..|..+++|++|++++|++++..|..     ..+..+.+.|||+.|...
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999999888888899999999999999999877642     455666899999999643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-58  Score=524.60  Aligned_cols=524  Identities=19%  Similarity=0.207  Sum_probs=394.2

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      +++++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            37899999999998888888899999999999999888888888888999999999999888888888888888888888


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCC--ceeecccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG--ILYLYSNSLS  264 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~  264 (725)
                      ++|.+++..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            88888876667788888888888888888764433444588888888888888877677777777777  6777777777


Q ss_pred             ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCc
Q 041178          265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG  344 (725)
Q Consensus       265 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  344 (725)
                      +..|..+.. .+|++|++++|..   ++..+..+.+++...+.-..+.           .+...++....+.     .+.
T Consensus       193 ~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~~i~~~~~~-----~l~  252 (606)
T 3t6q_A          193 GIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE-----------DMDDEDISPAVFE-----GLC  252 (606)
T ss_dssp             EECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT-----------TSCCCCCCGGGGG-----GGG
T ss_pred             ccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhc-----------cccccccChhHhc-----hhh
Confidence            666655443 4677777776652   1222222333322222211111           1111111111111     111


Q ss_pred             CCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEE
Q 041178          345 NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV  424 (725)
Q Consensus       345 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  424 (725)
                      . .+|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+.++++|+.|
T Consensus       253 ~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          253 E-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             G-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             c-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            1 14666666666666655555666666666666666666 556666666667777777776666666666667777777


Q ss_pred             ECcCccccccccc-cccCCCCCCEEeCcCCcccccc--CccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCC
Q 041178          425 RFNQNNLSGKVYE-AFGYHPNLTFLDLSQNNFYGEI--SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN  501 (725)
Q Consensus       425 ~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n  501 (725)
                      ++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            7777776655443 3667777777777777777665  666777888888888888888777778888888888888888


Q ss_pred             cccccCch-hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccc---cccccccCCCCCEEeCCCCcCcc
Q 041178          502 HIVGEIPV-QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW---IPKSIGNLLKLRYLNLSNNQFIQ  577 (725)
Q Consensus       502 ~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~  577 (725)
                      ++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.   .+..+..+++|++|++++|++++
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            88776654 478888899999999999888888888899999999999998763   23568899999999999999999


Q ss_pred             cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      ..|..++.+++|++|+|++|++++.+|..+.++++| +|++++|++++.+|..|..+++|+++++++|++.+.++.
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999999999999999999999 999999999999999899999999999999999987764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.8e-58  Score=522.48  Aligned_cols=523  Identities=17%  Similarity=0.159  Sum_probs=409.9

Q ss_pred             CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178           82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY  161 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  161 (725)
                      .+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            478999999999987665 6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC--EEEccCCcC
Q 041178          162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS--TLDLSKNQL  239 (725)
Q Consensus       162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l  239 (725)
                      +++|.+++..|..++++++|++|++++|.+.+..++.+..+++|++|++++|.+.+..|..++.+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999987788899999999999999999985545566699999999999999988888999999999  999999999


Q ss_pred             cccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccc
Q 041178          240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPIL  319 (725)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  319 (725)
                      ++..|..+.. .+|++|++++|..   ++..+..+.+++...+....+.+           +...++....+     ..+
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~-----~~l  251 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVF-----EGL  251 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGG-----GGG
T ss_pred             CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhcc-----------ccccccChhHh-----chh
Confidence            9877766654 6899999998862   34445555555444443322221           11111111111     111


Q ss_pred             cCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcE
Q 041178          320 GNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL  399 (725)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  399 (725)
                      .. .+|+.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus       252 ~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          252 CE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             GG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             hc-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence            11 15566666666666555555666666666666666665 45556666666666666666666666666666777777


Q ss_pred             EEcCCCcCCCCCCc-cccCCCCCcEEECcCccccccc--cccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCC
Q 041178          400 VNMCENHLSGPIPK-SLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM  476 (725)
Q Consensus       400 L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~  476 (725)
                      |++++|.+.+.+|. .+..+++|+.|++++|.+++..  +..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            77777776655544 3667777777777777777665  66677778888888888888777777788888888888888


Q ss_pred             CcccccCCc-cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCC---CCccccCccccccccccccccc
Q 041178          477 NNISGSIPL-EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG---MPFELGSLTELQYLDLSANKLR  552 (725)
Q Consensus       477 n~~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~  552 (725)
                      |++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|++|++++|+++
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence            888776554 377888888888888888888888888888888888888888762   3356888899999999999999


Q ss_pred             cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178          553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      +..|..|..+++|++|++++|++++..|..+.+++.| .|++++|.+++.+|..++.+++|+.|++++|++.+..+
T Consensus       490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            8888889999999999999999999889999999999 99999999988888888889999999999999876544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-57  Score=534.63  Aligned_cols=551  Identities=22%  Similarity=0.218  Sum_probs=445.0

Q ss_pred             EEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC-CccCcCCCCCCEEEccC
Q 041178           86 SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI-PPEIGHLNQLRSLYFDV  164 (725)
Q Consensus        86 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~  164 (725)
                      .++.++++++.. |  .  -.+++++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++
T Consensus         8 ~~dcs~~~L~~v-P--~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQV-P--Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSCC-C--S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCCC-C--C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            345566666543 3  2  4579999999999999999999999999999999999766666 78899999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCC--cCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcc
Q 041178          165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS--LGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSG  241 (725)
Q Consensus       165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~  241 (725)
                      |.+++..|..|+++++|++|++++|.+.+.+|..  +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999888999999999999999999999877665  8999999999999999987655 578999999999999999998


Q ss_pred             cCCccccCC--CCCCceeeccccccccCCccccCCCC------CCEEEccCCccccccCCCCCC---CCCccEEEccCCc
Q 041178          242 SIPFSLGNL--SNLGILYLYSNSLSGPIPSVIGNLES------LLQLDLSENQLSGSIPISLGN---LSSLTVMSLFSNS  310 (725)
Q Consensus       242 ~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n~  310 (725)
                      ..+..+..+  ++|+.|++++|.+.+..|..++.+.+      |++|++++|.+++..|..+..   ..+++.+.+..+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            888888887  89999999999999888887776665      889999998887777665543   2567777776443


Q ss_pred             CcccCcccccCCCcccccccccccccccCCccCcCC--CCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccccc
Q 041178          311 LSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL--SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP  388 (725)
Q Consensus       311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  388 (725)
                      ....               +..+.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|
T Consensus       243 ~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          243 MGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             CBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence            3211               11122222222334333  678888888888888778888888888888888888888778


Q ss_pred             ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC
Q 041178          389 HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK  468 (725)
Q Consensus       389 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  468 (725)
                      ..+..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+..|..+++|++|++++|.+++.     ..+++
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~  382 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS  382 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence            8888888888888888888888888888888888888888888888888888888999999998888743     23788


Q ss_pred             CcEEECCCCcccccCCccccccCCCcEEEccCCcccccC-chhhhcCCCCCeEeccCceecCCCCc-cccCccccccccc
Q 041178          469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI-PVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDL  546 (725)
Q Consensus       469 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  546 (725)
                      |+.+++++|+++ .+|..   ..+++.|++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|++|++
T Consensus       383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence            899999999887 44443   457899999999998653 33456899999999999999865443 4566899999999


Q ss_pred             cccccc-----cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178          547 SANKLR-----SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN  621 (725)
Q Consensus       547 s~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  621 (725)
                      ++|.+.     +..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|+.|++++|
T Consensus       459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence            999987     44456788999999999999999999999999999999999999999887777766  89999999999


Q ss_pred             ccccccCccccCCCCCCEEeCcCCCccccCCCCCCcCceeccCCCCCCCC
Q 041178          622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGN  671 (725)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~gn~~lc~~  671 (725)
                      ++++.+|..|.   +|+.+++++|++.+.++.. .|..+...++..+||.
T Consensus       537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~-~f~~~~~~~~~~~~~~  582 (844)
T 3j0a_A          537 QLLAPNPDVFV---SLSVLDITHNKFICECELS-TFINWLNHTNVTIAGP  582 (844)
T ss_dssp             CCCCCCSCCCS---SCCEEEEEEECCCCSSSCC-SHHHHHHHTTTTTCCC
T ss_pred             cCCCCChhHhC---CcCEEEecCCCcccccccH-HHHHHHHhcCcccccc
Confidence            99999998764   7899999999999888753 2223323344444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-57  Score=515.91  Aligned_cols=537  Identities=19%  Similarity=0.195  Sum_probs=417.6

Q ss_pred             EEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCC
Q 041178           86 SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN  165 (725)
Q Consensus        86 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  165 (725)
                      .+++++.+++. +|. .+  .+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus        15 ~~~c~~~~l~~-ip~-~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLSK-VPD-DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             EEECTTSCCSS-CCT-TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEccCCCccc-CCC-CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            35556666553 231 22  278999999999998888888999999999999999999888888999999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCC
Q 041178          166 QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIP  244 (725)
Q Consensus       166 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~  244 (725)
                      .+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            9988888889999999999999999887777788888999999999988875 568888888888888888888887777


Q ss_pred             ccccCCCCCC----ceeeccccccccCCccccCCCCCCEEEccCCccc-cccCCCCCCCCCccEEEccCCcCcccCcccc
Q 041178          245 FSLGNLSNLG----ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS-GSIPISLGNLSSLTVMSLFSNSLSSFIPPIL  319 (725)
Q Consensus       245 ~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  319 (725)
                      ..++.+++|+    +|++++|.+++..+..+... +|++|++++|.++ +..|..+.++++|+.+++..+.+.+..    
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~----  245 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----  245 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred             hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC----
Confidence            7777666654    57777777775554444433 6777777777664 344555666666666666544333210    


Q ss_pred             cCCCcccccccccccccccCCccCcCCCCCCEEEc-cCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCc
Q 041178          320 GNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYL-YNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV  398 (725)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  398 (725)
                          .+..+       ....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+. .+| .+..+++|+
T Consensus       246 ----~l~~~-------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~  310 (606)
T 3vq2_A          246 ----NLEIF-------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ  310 (606)
T ss_dssp             ----CCSCC-------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred             ----ccccc-------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence                00000       00111112222 3455555 55566666655 666777777777777765 344 666777777


Q ss_pred             EEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccc--cCccccCCCCCcEEECCC
Q 041178          399 LVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE--ISFNWRNFPKLGTFIVSM  476 (725)
Q Consensus       399 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~l~~  476 (725)
                      .|++++|.+ +.+| .+ .+++|+.|++++|...+..  .+..+++|++|++++|++++.  .+..+..+++|+.|++++
T Consensus       311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~  385 (606)
T 3vq2_A          311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF  385 (606)
T ss_dssp             EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred             EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence            777777777 5666 34 7777888888877544433  556788888888888888766  367788888888888888


Q ss_pred             CcccccCCccccccCCCcEEEccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccc-c
Q 041178          477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS-W  554 (725)
Q Consensus       477 n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~  554 (725)
                      |.+.+ +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .
T Consensus       386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  464 (606)
T 3vq2_A          386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT  464 (606)
T ss_dssp             CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            88775 56778888999999999999988877 678899999999999999998899999999999999999999988 4


Q ss_pred             cccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCC
Q 041178          555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM  634 (725)
Q Consensus       555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  634 (725)
                      +|..+..+++|++|++++|++++..|..++++++|++|++++|++++.+|..++++++|++|++++|+++ .+|..+..+
T Consensus       465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l  543 (606)
T 3vq2_A          465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF  543 (606)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred             hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence            7888999999999999999999999999999999999999999999999999999999999999999998 677778888


Q ss_pred             C-CCCEEeCcCCCccccCCC
Q 041178          635 H-NLSHIDISYNELQGPIPN  653 (725)
Q Consensus       635 ~-~L~~L~ls~N~l~g~ip~  653 (725)
                      + +|+++++++|++.+.++.
T Consensus       544 ~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CTTCCEEECCSCCCCCSSTT
T ss_pred             cccCcEEEccCCCcccCCcc
Confidence            6 699999999999988775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-56  Score=507.60  Aligned_cols=519  Identities=23%  Similarity=0.201  Sum_probs=422.6

Q ss_pred             CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178           82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY  161 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  161 (725)
                      .+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            579999999999987665 6899999999999999999998899999999999999999999988899999999999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC----EEEccC
Q 041178          162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS----TLDLSK  236 (725)
Q Consensus       162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~  236 (725)
                      +++|.+++..|..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++|+    +|++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999998887889999999999999999986 6799999999999999999999998888887776655    899999


Q ss_pred             CcCcccCCccccCCCCCCceeecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178          237 NQLSGSIPFSLGNLSNLGILYLYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI  315 (725)
Q Consensus       237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  315 (725)
                      |.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+..        .+..       +....
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~-------~~~~~  254 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI-------FEPSI  254 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC-------CCGGG
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccc-------cChHH
Confidence            99997665555544 9999999999987 456778899999999988765543211        1110       01111


Q ss_pred             cccccCCCccccccc-ccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCC
Q 041178          316 PPILGNLKSLSALGL-HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL  394 (725)
Q Consensus       316 ~~~l~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  394 (725)
                      +..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+
T Consensus       255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l  327 (606)
T 3vq2_A          255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DL  327 (606)
T ss_dssp             GTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CC
T ss_pred             hhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CC
Confidence            1112222 3444444 45555555554 6666667777777666643 33 566666777777777776 4566 33 67


Q ss_pred             CCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc--cccccCCCCCCEEeCcCCccccccCccccCCCCCcEE
Q 041178          395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTF  472 (725)
Q Consensus       395 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  472 (725)
                      ++|+.|++++|...+.+  .+..+++|+.|++++|.+++..  +..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus       328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL  404 (606)
T ss_dssp             SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred             CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence            77777777777544433  4567778888888888877663  6777788888888888888775 45778888899999


Q ss_pred             ECCCCcccccCC-ccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC-CCCccccCccccccccccccc
Q 041178          473 IVSMNNISGSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG-GMPFELGSLTELQYLDLSANK  550 (725)
Q Consensus       473 ~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~  550 (725)
                      ++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|+
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence            999998888777 678889999999999999998899999999999999999999997 478889999999999999999


Q ss_pred             cccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCC-CCCEEeCCCCccccccC
Q 041178          551 LRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK-SLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       551 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p  628 (725)
                      +++..|..+..+++|++|++++|++++.+|..++++++|++|+|++|+++ .+|..+..++ +|++|++++|++....+
T Consensus       485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99988999999999999999999999999999999999999999999996 6777788887 69999999999986544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-57  Score=518.34  Aligned_cols=494  Identities=19%  Similarity=0.266  Sum_probs=303.6

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc---CcceeCCCCCEEEEEcCCCCCcccc
Q 041178           22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAW---VGISCNQAERIISINLSSMGLNGTL   98 (725)
Q Consensus        22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w---~gv~C~~~~~v~~l~l~~~~l~~~~   98 (725)
                      +++...|++||.++++++..+      .|... ...++....|..+.+||.|   .||+|+..+||++|+|+++++.|.+
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~------~w~~~-~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGK------NWSQQ-GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG------GCCCC-C------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCC------CcccC-CcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC
Confidence            334568999999999998654      34211 0111222233445799999   9999998899999999999999999


Q ss_pred             CCcccCCCCCCcEEECCCCCC------Cc------cCchhccCCCCCCEEECCCCCCCCCCCccCcC-CCC---------
Q 041178           99 QEFAFSSFPHLVHLNLSFNIV------FG------TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGH-LNQ---------  156 (725)
Q Consensus        99 ~~~~~~~l~~L~~L~Ls~n~~------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~---------  156 (725)
                      + ++++++++|++|+|++|.+      .|      .+|...  +..|+ +++++|.+.+.+|..+.. +.+         
T Consensus        98 p-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~  173 (636)
T 4eco_A           98 P-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK  173 (636)
T ss_dssp             C-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred             C-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence            9 7999999999999999976      33      445444  55666 788888887777766642 111         


Q ss_pred             ---------CCEEEcc--CCcCCCCCCccccCCCCCCEEEcCCCcCCCC-----------------CCCCcC--CCCCCc
Q 041178          157 ---------LRSLYFD--VNQLHGPIPQEIGQLSLINELALCHNNLYGP-----------------IPPSLG--NLSNLA  206 (725)
Q Consensus       157 ---------L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~  206 (725)
                               ++.+.+.  .|.+++ +|..++++++|++|++++|.+++.                 +|+.++  ++++|+
T Consensus       174 ~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~  252 (636)
T 4eco_A          174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT  252 (636)
T ss_dssp             CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred             ccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence                     1111111  345555 666666666666666666666653                 566655  666666


Q ss_pred             EEEccCCcCCccCccccCCCCCCCEEEccCCc-Ccc-cCCccccCC------CCCCceeeccccccccCCc--cccCCCC
Q 041178          207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSG-SIPFSLGNL------SNLGILYLYSNSLSGPIPS--VIGNLES  276 (725)
Q Consensus       207 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~  276 (725)
                      +|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .++++++
T Consensus       253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~  331 (636)
T 4eco_A          253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK  331 (636)
T ss_dssp             EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred             EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence            66666666666666666666666666666665 555 555555554      55555555555555 4554  5555555


Q ss_pred             CCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc-ccccccccccccccCCccCcCCCCCCEEEcc
Q 041178          277 LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS-LSALGLHINQLNGVIPSSIGNLSNLRLLYLY  355 (725)
Q Consensus       277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  355 (725)
                      |++|++++|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++        
T Consensus       332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~--------  400 (636)
T 4eco_A          332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS--------  400 (636)
T ss_dssp             CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC--------
T ss_pred             CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc--------
Confidence            5555555555555555 5555555555555555554 34444444444 555555555544 3444443322        


Q ss_pred             CCcCccCCcccccCCCCCCEEECcCcccccccccccc-------CCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcC
Q 041178          356 NNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIG-------NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ  428 (725)
Q Consensus       356 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  428 (725)
                                    +++|+.|++++|.+++..|..+.       .+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus       401 --------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          401 --------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             --------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             --------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence                          11444444444444444444444       445566666666666533333344466666666666


Q ss_pred             ccccccccccccC-------CCCCCEEeCcCCccccccCcccc--CCCCCcEEECCCCcccccCCccccccCCCcEEEcc
Q 041178          429 NNLSGKVYEAFGY-------HPNLTFLDLSQNNFYGEISFNWR--NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS  499 (725)
Q Consensus       429 n~l~~~~~~~~~~-------~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls  499 (725)
                      |+++...+..+..       +++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus       467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            6666332223322       237888888888887 5666665  78888888888888886 77777888888888886


Q ss_pred             CCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc
Q 041178          500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI  576 (725)
Q Consensus       500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  576 (725)
                      +|+                  ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|++|++++|++.
T Consensus       545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            654                  3455666666666666666666666666666 33555444  56666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-55  Score=519.38  Aligned_cols=527  Identities=22%  Similarity=0.205  Sum_probs=387.2

Q ss_pred             CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccC-chhccCCCCCCEEECCCCCCCCCCC
Q 041178           70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTI-PPQVGNLSKLQHLDLGNNQLTGVIP  148 (725)
Q Consensus        70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p  148 (725)
                      .|+|..|.+ -..+++.|+|+++.+.+..+ ..|..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|
T Consensus        13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            467899988 66889999999999987666 68999999999999999777776 7789999999999999999999999


Q ss_pred             ccCcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCcCCccCccccCC
Q 041178          149 PEIGHLNQLRSLYFDVNQLHGPIPQE--IGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNLLFDSIPLVLGN  225 (725)
Q Consensus       149 ~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  225 (725)
                      ..|+++++|++|+|++|.+++.+|..  ++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..|..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            99999999999999999999877765  8999999999999999998765 57899999999999999999988888887


Q ss_pred             C--CCCCEEEccCCcCcccCCccccCCCC------CCceeeccccccccCCccccCC---CCCCEEEccCCccccccCCC
Q 041178          226 L--KSISTLDLSKNQLSGSIPFSLGNLSN------LGILYLYSNSLSGPIPSVIGNL---ESLLQLDLSENQLSGSIPIS  294 (725)
Q Consensus       226 l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~  294 (725)
                      +  ++|+.|+++.|.+.+..|..++.+++      |++|++++|.+++..+..+...   .+++.+.++.+......   
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~---  247 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF---  247 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS---
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc---
Confidence            7  89999999999999988888877766      9999999999998888776543   57888888744332110   


Q ss_pred             CCCCCCccEEEccCCcCcccCcccccCC--CcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC
Q 041178          295 LGNLSSLTVMSLFSNSLSSFIPPILGNL--KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS  372 (725)
Q Consensus       295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  372 (725)
                                  ..+.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++
T Consensus       248 ------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  315 (844)
T 3j0a_A          248 ------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN  315 (844)
T ss_dssp             ------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred             ------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence                        1111222222222222  34444445444444444444444555555555555554444444445555


Q ss_pred             CCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178          373 IFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ  452 (725)
Q Consensus       373 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~  452 (725)
                      |++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+++..     .+++|+.+++++
T Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~  390 (844)
T 3j0a_A          316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSG  390 (844)
T ss_dssp             CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEES
T ss_pred             CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCC
Confidence            555555555554444455555555555555555555444445555555555555555554321     245566666666


Q ss_pred             CccccccCccccCCCCCcEEECCCCcccccC-CccccccCCCcEEEccCCcccccCch-hhhcCCCCCeEeccCceec--
Q 041178          453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSI-PLEIGESFKLQVLDISSNHIVGEIPV-QLAKLFSLNKLILSLNQLS--  528 (725)
Q Consensus       453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~--  528 (725)
                      |+++. +|..   ..+++.+++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.++  
T Consensus       391 N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          391 NKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             CCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred             CCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence            66552 2221   345666666666666432 22345677888888888887755433 3455788888888888886  


Q ss_pred             ---CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcc
Q 041178          529 ---GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF  605 (725)
Q Consensus       529 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  605 (725)
                         +..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+.  ++|+.|+|++|++++.+|.
T Consensus       467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~  544 (844)
T 3j0a_A          467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD  544 (844)
T ss_dssp             CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred             cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence               34556788999999999999999998888899999999999999999987777665  8999999999999999997


Q ss_pred             cccCCCCCCEEeCCCCcccccc
Q 041178          606 QICNMKSLEKLNLCHNNLSGFI  627 (725)
Q Consensus       606 ~~~~l~~L~~L~Ls~N~l~~~~  627 (725)
                      .+   .+|+.|++++|++....
T Consensus       545 ~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          545 VF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             CC---SSCCEEEEEEECCCCSS
T ss_pred             Hh---CCcCEEEecCCCccccc
Confidence            65   47999999999987543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-54  Score=498.58  Aligned_cols=497  Identities=20%  Similarity=0.239  Sum_probs=279.8

Q ss_pred             ccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc------------CcceeCCCCCEEEEE
Q 041178           21 IASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAW------------VGISCNQAERIISIN   88 (725)
Q Consensus        21 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w------------~gv~C~~~~~v~~l~   88 (725)
                      .+++..+|++||++||+++.++      +|+   .+.    .|++...++|+|            .||+|+..+||++|+
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~------~W~---~~~----~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~  329 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK------NWR---YYS----GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS  329 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG------GCC---CCC----SSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC------CCC---cCC----CcccccCCccccccccccccccCcCceEecCCCCEEEEE
Confidence            3445678999999999999643      785   210    011111233999            999999889999999


Q ss_pred             cCCCCCccccCCcccCCCCCCcEEEC-CCCCCCccCchhcc---------------------------------------
Q 041178           89 LSSMGLNGTLQEFAFSSFPHLVHLNL-SFNIVFGTIPPQVG---------------------------------------  128 (725)
Q Consensus        89 l~~~~l~~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~---------------------------------------  128 (725)
                      |+++++.|.+| +++++|++|++|+| ++|.+.|..|....                                       
T Consensus       330 Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          330 LAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             CTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence            99999999999 79999999999999 88888776332211                                       


Q ss_pred             ------------CCCCCCEEECC--CCCCCCCCCccCcCCCCCCEEEccCCcCCCC-CCccccCCCCCCEEEcCCCcCCC
Q 041178          129 ------------NLSKLQHLDLG--NNQLTGVIPPEIGHLNQLRSLYFDVNQLHGP-IPQEIGQLSLINELALCHNNLYG  193 (725)
Q Consensus       129 ------------~l~~L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~  193 (725)
                                  ....++.+.+.  .|.+++ +|..|+++++|++|+|++|.+++. +|.....        .+.|.+.|
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~g  479 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAKQ  479 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHHH
T ss_pred             hhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cccccccc
Confidence                        11112222222  244554 555555555555555555555541 0000000        00000000


Q ss_pred             CCCCCcC--CCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCc-Ccc-cCCccccCCC-------CCCceeecccc
Q 041178          194 PIPPSLG--NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSG-SIPFSLGNLS-------NLGILYLYSNS  262 (725)
Q Consensus       194 ~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~  262 (725)
                      .+|+.++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|++|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            2444444  44444444444444444444444444444444444444 444 4444333332       45555555555


Q ss_pred             ccccCCc--cccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc-ccccccccccccccC
Q 041178          263 LSGPIPS--VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS-LSALGLHINQLNGVI  339 (725)
Q Consensus       263 l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~  339 (725)
                      ++ .+|.  .++++++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            44 4444  4445555555555555544 444 4444555555555555544 34444444444 555555555544 44


Q ss_pred             CccCcCCCC--CCEEEccCCcCccCCcccc---c--CCCCCCEEECcCccccccccccc-cCCCCCcEEEcCCCcCCCCC
Q 041178          340 PSSIGNLSN--LRLLYLYNNGFYGFVPEEI---G--YLKSIFELELCTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPI  411 (725)
Q Consensus       340 ~~~l~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~  411 (725)
                      |..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            444443332  5555555555544433211   1  1234555555555555 333332 24555555555555555 33


Q ss_pred             Ccccc--------CCCCCcEEECcCcccccccccccc--CCCCCCEEeCcCCccccccCccccCCCCCcEEECCC-----
Q 041178          412 PKSLR--------NLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM-----  476 (725)
Q Consensus       412 p~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~-----  476 (725)
                      |..+.        ++++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++     
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            33222        1225666666666666 4444444  56666666666666665 455566666666666654     


Q ss_pred             -CcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccc
Q 041178          477 -NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR  552 (725)
Q Consensus       477 -n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  552 (725)
                       |++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.|.+|+..
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence             777788888888888888888888888 67777654  58888888888887666666655556666677766554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-52  Score=472.98  Aligned_cols=521  Identities=21%  Similarity=0.202  Sum_probs=417.2

Q ss_pred             CcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCC
Q 041178          109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH  188 (725)
Q Consensus       109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  188 (725)
                      .+.++.++.+++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            456777766654 3555443  5799999999999988888999999999999999999988788899999999999999


Q ss_pred             CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccC
Q 041178          189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI  267 (725)
Q Consensus       189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~  267 (725)
                      |.+++..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            99998888899999999999999999987666679999999999999999987 46889999999999999999999887


Q ss_pred             CccccCCCCC----CEEEccCCccccccCCCCCCCCCccEEEccCCcCcc-cCcccccCCCcccccccccccccccCCcc
Q 041178          268 PSVIGNLESL----LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS-FIPPILGNLKSLSALGLHINQLNGVIPSS  342 (725)
Q Consensus       268 p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  342 (725)
                      +..++.+++|    +++++++|.+++..|..+... +|+.|++++|.... .++..+..+++++...+....+..     
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-----  239 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-----  239 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence            8888888888    899999999988777777655 79999998875432 234455566666655544332211     


Q ss_pred             CcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCc-cccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCC
Q 041178          343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN-RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL  421 (725)
Q Consensus       343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  421 (725)
                         ...++  .+....+     ..+..+ .++.+++.++ .+.+..|..+..+++|+.+++++|.+. .+|..+..+ +|
T Consensus       240 ---~~~l~--~~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L  306 (570)
T 2z63_A          240 ---EGNLE--KFDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW  306 (570)
T ss_dssp             ---CSSCE--ECCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred             ---chhhh--hcchhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence               01111  0111111     111111 2455566665 566666777777777777777777776 366666666 77


Q ss_pred             cEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccC--CccccccCCCcEEEcc
Q 041178          422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI--PLEIGESFKLQVLDIS  499 (725)
Q Consensus       422 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~Ls  499 (725)
                      +.|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|+.|++++|.+++..  |..+..+++|++|+++
T Consensus       307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence            77887777776 3333  3567888888888887766554  67888888888888887654  6678888999999999


Q ss_pred             CCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-c
Q 041178          500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI-Q  577 (725)
Q Consensus       500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~  577 (725)
                      +|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +
T Consensus       382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            9998876555 8889999999999999998766 57889999999999999999988999999999999999999997 6


Q ss_pred             cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178          578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF  657 (725)
Q Consensus       578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  657 (725)
                      .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|....+
T Consensus       461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            78999999999999999999999998999999999999999999999988889999999999999999999999976544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.9e-51  Score=459.00  Aligned_cols=498  Identities=21%  Similarity=0.222  Sum_probs=385.6

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57999999999999988889999999999999999999888889999999999999999999888899999999999999


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC----Cceeeccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL----GILYLYSN  261 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n  261 (725)
                      ++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999997766679999999999999999987 579999999999999999999998888889988888    89999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcccc-ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178          262 SLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP  340 (725)
Q Consensus       262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  340 (725)
                      .+.+..|..+..+ +|++|++++|.... .++..+..+++++...+....+...        .+++.+  ....+.    
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~--~~~~~~----  252 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF--DKSALE----  252 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC--CTTTTG----
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc--chhhhc----
Confidence            9998888877766 89999999885431 2344455677777766654332211        111110  000000    


Q ss_pred             ccCcCCCCCCEEEccCC-cCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCC
Q 041178          341 SSIGNLSNLRLLYLYNN-GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT  419 (725)
Q Consensus       341 ~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~  419 (725)
                       .+..+ .++.++++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.  ..++
T Consensus       253 -~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~  325 (570)
T 2z63_A          253 -GLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK  325 (570)
T ss_dssp             -GGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred             -ccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence             01111 1344444444 444445555555555555555555555 355555555 6666666666655 3333  3456


Q ss_pred             CCcEEECcCccccccccccccCCCCCCEEeCcCCcccccc--CccccCCCCCcEEECCCCcccccCCccccccCCCcEEE
Q 041178          420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI--SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD  497 (725)
Q Consensus       420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  497 (725)
                      +|+.|++++|.+.+..+.  ..+++|++|++++|++++..  +..+..+++|+.|++++|.+.+..+. +..+++|++|+
T Consensus       326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~  402 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  402 (570)
T ss_dssp             SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence            666666666666554443  45677777777777776543  55566777777778877777754444 77788888888


Q ss_pred             ccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccc-cccccccccCCCCCEEeCCCCcC
Q 041178          498 ISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR-SWIPKSIGNLLKLRYLNLSNNQF  575 (725)
Q Consensus       498 Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l  575 (725)
                      +++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l  482 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  482 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence            88888877665 46788889999999999998888888899999999999999987 56888999999999999999999


Q ss_pred             cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCc
Q 041178          576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPR  629 (725)
Q Consensus       576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  629 (725)
                      ++..|..+..+++|++|++++|.+++.+|..+.++++|+.|++++|++++..|.
T Consensus       483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999899999999999999999999988888899999999999999999987663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7e-50  Score=449.73  Aligned_cols=489  Identities=19%  Similarity=0.186  Sum_probs=307.1

Q ss_pred             ECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCC
Q 041178          137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLF  216 (725)
Q Consensus       137 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  216 (725)
                      |.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus        11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            44444444 3333332  44455555555444444444445555555555555554444444555555555555555554


Q ss_pred             ccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCC-ccccCCCCCCEEEccCCccccccCCC
Q 041178          217 DSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIP-SVIGNLESLLQLDLSENQLSGSIPIS  294 (725)
Q Consensus       217 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~  294 (725)
                      +..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            4444445555555555555555543 234445555555555555555322332 34555666666666666666556666


Q ss_pred             CCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccC--C-ccCcCCCCCCEEEccCCcCccCCcc----cc
Q 041178          295 LGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI--P-SSIGNLSNLRLLYLYNNGFYGFVPE----EI  367 (725)
Q Consensus       295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~----~l  367 (725)
                      +..+++|++|++++|.+.......+..+++|++|++++|++++..  | .....+++|+.|++++|.+.+..+.    .+
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL  247 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred             hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence            666666666666666554332222344566666666666665421  1 1123455666666666665543222    22


Q ss_pred             cCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccccc-----ccccccCC
Q 041178          368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK-----VYEAFGYH  442 (725)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~  442 (725)
                      ..+++++.+++++|.+.+......                  .....+..+.+|+.+.+.++.+...     .+..+...
T Consensus       248 ~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          248 RYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             GGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             hhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence            344556666666655543211000                  0011223344555555555544321     11122334


Q ss_pred             CCCCEEeCcCCccccccCccc-cCCCCCcEEECCCCcccccCC---ccccccCCCcEEEccCCcccccCc--hhhhcCCC
Q 041178          443 PNLTFLDLSQNNFYGEISFNW-RNFPKLGTFIVSMNNISGSIP---LEIGESFKLQVLDISSNHIVGEIP--VQLAKLFS  516 (725)
Q Consensus       443 ~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~  516 (725)
                      ++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.+|   ..++.+++|++|++++|++++..+  ..+..+++
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            67888888888776 455544 568888888888888887664   346778899999999999886543  56888999


Q ss_pred             CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      |++|++++|+++ .+|..+..+++|++|++++|++++ +|..+  .++|++|++++|++++.+    ..+++|++|+|++
T Consensus       389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~  460 (549)
T 2z81_A          389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR  460 (549)
T ss_dssp             CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred             CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence            999999999998 678888899999999999999886 44433  268999999999998754    5789999999999


Q ss_pred             cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178          597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF  657 (725)
Q Consensus       597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  657 (725)
                      |+++ .+|. ...+++|++|+|++|++++.+|..|..+++|++|++++|++.|.+|....+
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l  519 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  519 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence            9996 6775 567999999999999999999999999999999999999999988854333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-50  Score=461.82  Aligned_cols=458  Identities=18%  Similarity=0.225  Sum_probs=369.9

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCC------CC------CCCccCcCCCCCCEEEccCCcCCCCCCcc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL------TG------VIPPEIGHLNQLRSLYFDVNQLHGPIPQE  174 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l------~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  174 (725)
                      .+++.|+|+++.+.|.+|++++++++|++|+|++|.+      .|      .+|...  +.+|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            4789999999999999999999999999999999976      23      344433  55677 888888888877776


Q ss_pred             ccC-CCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc--CCcCCccCccccCCCCCCCEEEccCCcCccc---------
Q 041178          175 IGQ-LSLINELALCHNNLYGPIPPSLGNLSNLANFYLN--NNLLFDSIPLVLGNLKSISTLDLSKNQLSGS---------  242 (725)
Q Consensus       175 ~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---------  242 (725)
                      +.. +..+..+++....+..      .....++.+++.  .|.+++ +|..++++++|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            652 2222223332222211      111222222232  456666 777777788888888888887775         


Q ss_pred             --------CCcccc--CCCCCCceeeccccccccCCccccCCCCCCEEEccCCc-ccc-ccCCCCCCC------CCccEE
Q 041178          243 --------IPFSLG--NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ-LSG-SIPISLGNL------SSLTVM  304 (725)
Q Consensus       243 --------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L  304 (725)
                              +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+      ++|++|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    788877  88888888888888888888888888888888888887 777 777766665      888888


Q ss_pred             EccCCcCcccCcc--cccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC-CCEEECcCc
Q 041178          305 SLFSNSLSSFIPP--ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS-IFELELCTN  381 (725)
Q Consensus       305 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n  381 (725)
                      ++++|.++ .+|.  .++.+++|++|++++|++.|.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            88888888 5777  78888888888888888888888 8888888899999988888 67777888888 999999999


Q ss_pred             cccccccccccCCC--CCcEEEcCCCcCCCCCCcccc-------CCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178          382 RLRGGIPHSIGNLT--ELVLVNMCENHLSGPIPKSLR-------NLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ  452 (725)
Q Consensus       382 ~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~  452 (725)
                      .++ .+|..+..+.  +|+.|++++|.+++.+|..+.       .+++|+.|++++|++++..+..+..+++|++|++++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            988 7888877655  899999999999999999888       788999999999999966666677899999999999


Q ss_pred             CccccccCcc-ccCC-------CCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178          453 NNFYGEISFN-WRNF-------PKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL  522 (725)
Q Consensus       453 n~l~~~~~~~-~~~~-------~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  522 (725)
                      |+++ .+|.. +...       ++|+.|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|++
T Consensus       467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred             CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence            9999 55543 3333       39999999999999 7888887  89999999999999997 8888889999999999


Q ss_pred             cCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc
Q 041178          523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE  602 (725)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  602 (725)
                      ++|+                  ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|++|+|++|++...
T Consensus       544 s~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          544 RNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            9887                  6788999999999999999999999999999 78888766  8999999999987543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.6e-49  Score=441.32  Aligned_cols=491  Identities=21%  Similarity=0.214  Sum_probs=344.5

Q ss_pred             CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178           70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP  149 (725)
Q Consensus        70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  149 (725)
                      .|.|.|+ |+.         ++++++ .+|. .+  .++|++|++++|.+.+..|..|+++++|++|++++|.+++..|.
T Consensus         3 ~C~~~~~-c~~---------~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDG---------RSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EEC---------TTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EEC---------CCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4899998 853         233333 2332 22  37999999999999988889999999999999999999988889


Q ss_pred             cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCC
Q 041178          150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLK  227 (725)
Q Consensus       150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~  227 (725)
                      .|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..++.++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            99999999999999999998888889999999999999999987 467789999999999999998555555 6899999


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccccc--CC-CCCCCCCccEE
Q 041178          228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI--PI-SLGNLSSLTVM  304 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L  304 (725)
                      +|++|++++|.+++..|..++.+++|++|+++.|.+....+..+..+++|++|++++|++++..  |. ....+++|+.|
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            9999999999999999999999999999999999876432233456889999999999988642  21 23456788889


Q ss_pred             EccCCcCcccCcc----cccCCCcccccccccccccccCC------ccCcCCCCCCEEEccCCcCccCCcccccCCCCCC
Q 041178          305 SLFSNSLSSFIPP----ILGNLKSLSALGLHINQLNGVIP------SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF  374 (725)
Q Consensus       305 ~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  374 (725)
                      ++++|.+++..+.    .+..+++|+.+++++|.+.+...      ..+..+++|+.|++.++.+.....  +.      
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~------  300 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FY------  300 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SC------
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--cc------
Confidence            9888887765433    33456677777777776654211      123444555555555554332100  00      


Q ss_pred             EEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccc-cCCCCCcEEECcCcccccccc---ccccCCCCCCEEeC
Q 041178          375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL-RNLTSLERVRFNQNNLSGKVY---EAFGYHPNLTFLDL  450 (725)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l  450 (725)
                                 .++..+....+|+.+++++|.+. .+|..+ ..+++|+.|++++|++++..+   ..+..+++|++|++
T Consensus       301 -----------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L  368 (549)
T 2z81_A          301 -----------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL  368 (549)
T ss_dssp             -----------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred             -----------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence                       01111222345566666666554 344333 355666666666666665443   22455666666666


Q ss_pred             cCCccccccC--ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec
Q 041178          451 SQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS  528 (725)
Q Consensus       451 s~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  528 (725)
                      ++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+  .++|++|++++|+++
T Consensus       369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~  444 (549)
T 2z81_A          369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLD  444 (549)
T ss_dssp             TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCS
T ss_pred             cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChh
Confidence            6666654322  33556666666666666666 4566666666777777777766532 2222  246777777777777


Q ss_pred             CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc
Q 041178          529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP  604 (725)
Q Consensus       529 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  604 (725)
                      +..    ..+++|++|++++|+++. +|. ...+++|++|++++|++++.+|..+..+++|++|++++|.+.+..|
T Consensus       445 ~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          445 SFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            542    356777777777777774 554 4567777788888777777777777777777788888887776665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.7e-46  Score=430.12  Aligned_cols=550  Identities=19%  Similarity=0.190  Sum_probs=383.4

Q ss_pred             CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178           70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP  149 (725)
Q Consensus        70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  149 (725)
                      +..|....|....  +.++.++.+++. +|. .+  -+++++|||++|.+++..+.+|.++++|++|+|++|.+++..|.
T Consensus        21 p~~~~~c~~~~~~--~~~~c~~~~l~~-vP~-~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~   94 (635)
T 4g8a_A           21 PESWEPCVEVVPN--ITYQCMELNFYK-IPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG   94 (635)
T ss_dssp             ----CCSEEEETT--TEEECTTSCCSS-CCS-SS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCccccCCC--CEEECCCCCcCc-cCC-CC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence            4456554443222  234666666653 331 11  14799999999999988888999999999999999999988888


Q ss_pred             cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCC
Q 041178          150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKS  228 (725)
Q Consensus       150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~  228 (725)
                      +|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++
T Consensus        95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~  174 (635)
T 4g8a_A           95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  174 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence            89999999999999999997777789999999999999999998777788999999999999998865 46777888899


Q ss_pred             CCEEEccCCcCcccCCccccCCCCCC----ceeeccccccccCCccccCCCCCCEEEccCCccccc-cCCCCCCCCCccE
Q 041178          229 ISTLDLSKNQLSGSIPFSLGNLSNLG----ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS-IPISLGNLSSLTV  303 (725)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~  303 (725)
                      |++|++++|++++..+..+..+.+++    .++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++.
T Consensus       175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~  253 (635)
T 4g8a_A          175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  253 (635)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred             hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccc
Confidence            99999999998887777776655543    45566666654433333 223445566655543221 1222333444444


Q ss_pred             EEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc---CCcccccCCCCCCEEECcC
Q 041178          304 MSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG---FVPEEIGYLKSIFELELCT  380 (725)
Q Consensus       304 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~  380 (725)
                      ..+..+......                  .+.......+..+..+....+..+....   ..+..+....+++.+.+.+
T Consensus       254 ~~l~~~~~~~~~------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  315 (635)
T 4g8a_A          254 HRLVLGEFRNEG------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS  315 (635)
T ss_dssp             EEEEEECCTTSC------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred             cccccccccccc------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence            444322211100                  0001111122222233333333222111   1222233444555555555


Q ss_pred             ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc--c
Q 041178          381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG--E  458 (725)
Q Consensus       381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~  458 (725)
                      +.+....  .+.....++.+++.+|.+.+..+.   .+..|+.+++..|......  ....+++|+.+++++|.+..  .
T Consensus       316 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          316 VTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             CEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEE
T ss_pred             ccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccc
Confidence            5544322  233345566666666655543322   3455666666666554322  23356777777777776643  3


Q ss_pred             cCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccC
Q 041178          459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGS  537 (725)
Q Consensus       459 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  537 (725)
                      .+..+....+|+.+++..+.... .+..+..+++|+.++++.+......+ ..+..+.+++.++++.|.+.+..+..+..
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~  467 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  467 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            34455667777888877777654 34556777888888888877655444 46778889999999999999888888999


Q ss_pred             cccccccccccccc-ccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEE
Q 041178          538 LTELQYLDLSANKL-RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL  616 (725)
Q Consensus       538 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  616 (725)
                      +++|++|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|++++..|..|+++++|++|
T Consensus       468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred             chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence            99999999999975 45678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCccccccCccccCC-CCCCEEeCcCCCccccCC
Q 041178          617 NLCHNNLSGFIPRCFEGM-HNLSHIDISYNELQGPIP  652 (725)
Q Consensus       617 ~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip  652 (725)
                      ||++|++++.+|..|..+ ++|++|++++|++.+.+.
T Consensus       548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999998 689999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-47  Score=441.39  Aligned_cols=464  Identities=17%  Similarity=0.200  Sum_probs=316.5

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEEC-CCCCCCCCCCccCcCCC-CCCE-----E---------E-ccCCcCCC
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDL-GNNQLTGVIPPEIGHLN-QLRS-----L---------Y-FDVNQLHG  169 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l~-~L~~-----L---------~-L~~n~l~~  169 (725)
                      .+++.|+|+++.+.|.+|++++++++|++|+| ++|.++|..|....... .+..     +         + .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999999999999999999999999 89988877553311110 0000     0         0 00000000


Q ss_pred             -----------CCCccccCCCCCCEEEcCC--CcCCCCCCCCcCCCCCCcEEEccCCcCCc-----------------cC
Q 041178          170 -----------PIPQEIGQLSLINELALCH--NNLYGPIPPSLGNLSNLANFYLNNNLLFD-----------------SI  219 (725)
Q Consensus       170 -----------~~p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~  219 (725)
                                 ..+........++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                       0111112223344444443  67776 77788888888888888888877                 48


Q ss_pred             ccccC--CCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc-ccc-cCCccccCC-------CCCCEEEccCCccc
Q 041178          220 PLVLG--NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS-LSG-PIPSVIGNL-------ESLLQLDLSENQLS  288 (725)
Q Consensus       220 p~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l-------~~L~~L~L~~n~l~  288 (725)
                      |..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++++       ++|++|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99988  99999999999999999999999999999999999998 988 788766555       49999999999999


Q ss_pred             cccCC--CCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCC-CCEEEccCCcCccCCcc
Q 041178          289 GSIPI--SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN-LRLLYLYNNGFYGFVPE  365 (725)
Q Consensus       289 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~  365 (725)
                       .+|.  .+.++++|++|++++|.++ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             8898  8999999999999999999 677 8999999999999999999 88989999999 999999999998 6787


Q ss_pred             cccCCCC--CCEEECcCccccccccccc---c--CCCCCcEEEcCCCcCCCCCCcc-ccCCCCCcEEECcCccccccccc
Q 041178          366 EIGYLKS--IFELELCTNRLRGGIPHSI---G--NLTELVLVNMCENHLSGPIPKS-LRNLTSLERVRFNQNNLSGKVYE  437 (725)
Q Consensus       366 ~l~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~  437 (725)
                      .+...+.  |+.|++++|++.+.+|...   .  .+.+|+.|++++|.++. +|.. +..+++|+.|++++|+++.....
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChH
Confidence            7776644  8899999998887665322   2  23366677777776663 3333 33566666666666666522222


Q ss_pred             cccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCchhhhcCC
Q 041178          438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPVQLAKLF  515 (725)
Q Consensus       438 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~  515 (725)
                      .+....                 ..+.++++|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..++
T Consensus       716 ~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~  776 (876)
T 4ecn_A          716 SLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS  776 (876)
T ss_dssp             SSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred             Hhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence            222111                 00112224555555555544 4444444  55555555555555554 455555555


Q ss_pred             CCCeEeccC------ceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178          516 SLNKLILSL------NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL  589 (725)
Q Consensus       516 ~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  589 (725)
                      +|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~  853 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA  853 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred             CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence            555555544      556666666666666666666666666 34555443  466666666666655544444444444


Q ss_pred             cccccccccc
Q 041178          590 SKLDLSYNFL  599 (725)
Q Consensus       590 ~~L~Ls~N~l  599 (725)
                      ..+.|.+|..
T Consensus       854 ~~~~L~~n~~  863 (876)
T 4ecn_A          854 GMYVLLYDKT  863 (876)
T ss_dssp             TCCEEECCTT
T ss_pred             hheeecCCCc
Confidence            5555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=427.12  Aligned_cols=458  Identities=19%  Similarity=0.197  Sum_probs=296.5

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      +++|+++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46777777766 3555554  67777777777777666666777777777777777777666666777777777777777


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC--Cceeecccccccc
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL--GILYLYSNSLSGP  266 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~  266 (725)
                      .++ .+|..  .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+.+ 
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~-  152 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG-  152 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence            666 34443  56666666666666654 345556666666666666665553   234444444  555555555400 


Q ss_pred             CCccccCCCCCCEEEccCCccccccCCCCCCCC-CccEEEccCCcCcccCc-ccccCCCccccccccccc-------ccc
Q 041178          267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLS-SLTVMSLFSNSLSSFIP-PILGNLKSLSALGLHINQ-------LNG  337 (725)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-------l~~  337 (725)
                                           .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|.       +.+
T Consensus       153 ---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  211 (520)
T 2z7x_B          153 ---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS  211 (520)
T ss_dssp             ---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred             ---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence                                 333444443333 22234455555444333 245556666666666665       454


Q ss_pred             cCCccCcCCCCCCEEEccCCcCccCCccccc---CCCCCCEEECcCccccccccccc-----cCCCCCcEEEcCCCcCCC
Q 041178          338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG---YLKSIFELELCTNRLRGGIPHSI-----GNLTELVLVNMCENHLSG  409 (725)
Q Consensus       338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~  409 (725)
                      .+| .+..+++|+.|++++|.+.+..+..+.   ..++|++|++++|.++|.+|..+     ..+++|+.+++++|.+  
T Consensus       212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--  288 (520)
T 2z7x_B          212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--  288 (520)
T ss_dssp             HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred             chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence            444 566677777777777766543222111   13456666666666666666555     4555555555555554  


Q ss_pred             CCC-ccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc
Q 041178          410 PIP-KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG  488 (725)
Q Consensus       410 ~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~  488 (725)
                      .+| ..+..+                     ....+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+.
T Consensus       289 ~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~  345 (520)
T 2z7x_B          289 GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG  345 (520)
T ss_dssp             CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence            233 222211                     00134555566555554321  114566777777777777776777777


Q ss_pred             ccCCCcEEEccCCcccc--cCchhhhcCCCCCeEeccCceecCCCCc-cccCccccccccccccccccccccccccCCCC
Q 041178          489 ESFKLQVLDISSNHIVG--EIPVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLLKL  565 (725)
Q Consensus       489 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  565 (725)
                      .+++|++|++++|++.+  .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++|
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L  423 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI  423 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence            77888888888888876  5667788888899999999998875654 477889999999999999887776654  789


Q ss_pred             CEEeCCCCcCcccChhhhhcccccccccccccccCccCccc-ccCCCCCCEEeCCCCccccccC
Q 041178          566 RYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       566 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      ++|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++++..+
T Consensus       424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999997 788888899999999999999975 5554 8999999999999999987644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-47  Score=427.64  Aligned_cols=457  Identities=21%  Similarity=0.203  Sum_probs=309.1

Q ss_pred             CEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCC
Q 041178          134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN  213 (725)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  213 (725)
                      ++||+++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.+            
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------   67 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF------------   67 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT------------
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc------------
Confidence            35666666666 3554443  55555555555555444445555555555555555554444444444            


Q ss_pred             cCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc-cCCccccCCCCCCEEEccCCccccccC
Q 041178          214 LLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG-PIPSVIGNLESLLQLDLSENQLSGSIP  292 (725)
Q Consensus       214 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p  292 (725)
                                  +++|++|++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   
T Consensus        68 ------------l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---  129 (520)
T 2z7x_B           68 ------------NQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---  129 (520)
T ss_dssp             ------------CTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---
T ss_pred             ------------ccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---
Confidence                        444444444444444 23332  44455555555555544 244555555666666666665553   


Q ss_pred             CCCCCCCCc--cEEEccCCcC--cccCcccccCCC-cccccccccccccccCCc-cCcCCCCCCEEEccCCc-------C
Q 041178          293 ISLGNLSSL--TVMSLFSNSL--SSFIPPILGNLK-SLSALGLHINQLNGVIPS-SIGNLSNLRLLYLYNNG-------F  359 (725)
Q Consensus       293 ~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l  359 (725)
                      ..+..+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|.       +
T Consensus       130 ~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  209 (520)
T 2z7x_B          130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF  209 (520)
T ss_dssp             GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred             hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence            234445555  8888888888  666776666554 233456666666554443 45566667777776665       3


Q ss_pred             ccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccc
Q 041178          360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF  439 (725)
Q Consensus       360 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~  439 (725)
                      .+.++ .+..+++|+.|++++|.+.+..+..+.                    ... ..++|+.|++++|++++.+|..+
T Consensus       210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~--------------------~~~-~~~~L~~L~l~~n~l~~~~p~~~  267 (520)
T 2z7x_B          210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRIL--------------------QLV-WHTTVWYFSISNVKLQGQLDFRD  267 (520)
T ss_dssp             HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHH--------------------HHH-HTSSCSEEEEEEEEEESCCCCCC
T ss_pred             ecchh-hhccccchhhccccccccCHHHHHHHH--------------------HHh-hhCcccEEEeecccccCccccch
Confidence            33333 444555555555555554432221110                    000 12356666666666665566555


Q ss_pred             -----cCCCCCCEEeCcCCccccccC-ccccCC---CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchh
Q 041178          440 -----GYHPNLTFLDLSQNNFYGEIS-FNWRNF---PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ  510 (725)
Q Consensus       440 -----~~~~~L~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  510 (725)
                           ..+++|+.+++++|.+  .+| ..+..+   ++|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..
T Consensus       268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~  343 (520)
T 2z7x_B          268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN  343 (520)
T ss_dssp             CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence                 6777888888888877  344 333333   67999999999986432  1267899999999999999999999


Q ss_pred             hhcCCCCCeEeccCceecC--CCCccccCcccccccccccccccccccc-ccccCCCCCEEeCCCCcCcccChhhhhccc
Q 041178          511 LAKLFSLNKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSWIPK-SIGNLLKLRYLNLSNNQFIQKIPIEVEKLI  587 (725)
Q Consensus       511 ~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  587 (725)
                      +..+++|++|++++|++++  .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+.  +
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            9999999999999999997  5667899999999999999999985554 588999999999999999988887664  7


Q ss_pred             ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCcc-ccCCCCCCEEeCcCCCccccCCC
Q 041178          588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC-FEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      +|++|++++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|++|++++|++++.++.
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9999999999996 788888899999999999999995 5554 99999999999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6e-44  Score=408.98  Aligned_cols=531  Identities=20%  Similarity=0.188  Sum_probs=409.1

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      ++.+-++-+++ .+|..+.  +++++|||++|.+++..|.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus        34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            34566665554 4565442  47899999999999777788999999999999999999777788999999999999999


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCC
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIP  268 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p  268 (725)
                      ++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            9987766778999999999999999988777788999999999999999875 457778888999999999999888777


Q ss_pred             ccccCCCC----CCEEEccCCccccccCCCCCCCCCccEEEccCCcCccc-CcccccCCCcccccccccccccccCCccC
Q 041178          269 SVIGNLES----LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSI  343 (725)
Q Consensus       269 ~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  343 (725)
                      ..+..+.+    ...++++.|.+....+. ......++.+++.+|..... .+..+..+..++...+..+.....     
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-----  264 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-----  264 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS-----
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc-----
Confidence            77665443    34677888888754443 33445567777777654432 222344444444444333222111     


Q ss_pred             cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccc---ccccccccCCCCCcEEEcCCCcCCCCCCccccCCCC
Q 041178          344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR---GGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS  420 (725)
Q Consensus       344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  420 (725)
                                   ..+.......+.....+...++..+...   ...+..+....+++.+++..+.+....  .+.....
T Consensus       265 -------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~  329 (635)
T 4g8a_A          265 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG  329 (635)
T ss_dssp             -------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCC
T ss_pred             -------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchh
Confidence                         0111112222333344444444433222   234455667788999999888876543  3566788


Q ss_pred             CcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc--cCCccccccCCCcEEEc
Q 041178          421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG--SIPLEIGESFKLQVLDI  498 (725)
Q Consensus       421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~L  498 (725)
                      ++.|++.+|.+.+....   .++.|+.+++.+|.....  .....+++|+.+++++|.+..  ..+..+..+.+|+.+++
T Consensus       330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL  404 (635)
T ss_dssp             CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred             hhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence            99999999998766554   357889999999887643  344578999999999998854  45667778899999999


Q ss_pred             cCCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-
Q 041178          499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI-  576 (725)
Q Consensus       499 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-  576 (725)
                      +.|.... .+..+..+++|+.++++++......+ ..+..+++++.++++.|.+.+..+..+..+++|+.|++++|++. 
T Consensus       405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~  483 (635)
T 4g8a_A          405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  483 (635)
T ss_dssp             CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            9998764 44567889999999999998876554 56788999999999999999999999999999999999999854 


Q ss_pred             ccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--
Q 041178          577 QKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--  654 (725)
Q Consensus       577 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--  654 (725)
                      +.+|..+..+++|++|+|++|++++.+|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++..|..  
T Consensus       484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred             ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence            457888999999999999999999999999999999999999999999999999999999999999999999988864  


Q ss_pred             ---CCcCceeccCCCCCCC
Q 041178          655 ---TTFKDARMEGNKGLCG  670 (725)
Q Consensus       655 ---~~~~~~~~~gn~~lc~  670 (725)
                         ..++.+.+.|||+-|.
T Consensus       564 ~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          564 HFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCTTCCEEECTTCCBCCS
T ss_pred             hhhCcCCEEEeeCCCCccc
Confidence               2355568999999995

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.1e-44  Score=400.30  Aligned_cols=463  Identities=20%  Similarity=0.188  Sum_probs=285.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178          129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF  208 (725)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  208 (725)
                      .+...+++++++|.+++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            34455899999999984 777664  889999999999988777888999999999999999888878888888999999


Q ss_pred             EccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCCccccCCCCC--CEEEccCC
Q 041178          209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL--LQLDLSEN  285 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n  285 (725)
                      ++++|.+. .+|..  .+++|++|++++|++++ ..|..++++++|++|++++|.+++.   .+..+++|  ++|++++|
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            99998886 45654  78888888888888876 3457788888888888888877653   33444444  77777777


Q ss_pred             cc--ccccCCCCCCCC-CccEEEccCCcCcccCcc-cccCCCccccccccccc-----ccccCCccCcCCCCCCEEEccC
Q 041178          286 QL--SGSIPISLGNLS-SLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQ-----LNGVIPSSIGNLSNLRLLYLYN  356 (725)
Q Consensus       286 ~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~-----l~~~~~~~l~~l~~L~~L~L~~  356 (725)
                      .+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+     +.+. ...+..+++|+.+++.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence            77  666666555443 111445566665554332 34455566666666553     1111 11234444555555444


Q ss_pred             CcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccc-----cCCCCCcEEECcCccc
Q 041178          357 NGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL-----RNLTSLERVRFNQNNL  431 (725)
Q Consensus       357 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l  431 (725)
                      +.+.+.                   .+.+ ++..+ ...+|++|++++|.++|.+|..+     ..++.|+.+++..+.+
T Consensus       259 ~~l~~~-------------------~~~~-~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~  317 (562)
T 3a79_B          259 IETTWK-------------------CSVK-LFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF  317 (562)
T ss_dssp             EEECHH-------------------HHHH-HHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred             CcCcHH-------------------HHHH-HHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence            433221                   1111 11111 12255555555555555555444     3344444444444433


Q ss_pred             ccccc-cccc---CCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccC
Q 041178          432 SGKVY-EAFG---YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI  507 (725)
Q Consensus       432 ~~~~~-~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  507 (725)
                        .+| ..+.   ...+|++|++++|.+....   +                       ...+++|++|++++|++++..
T Consensus       318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~-----------------------~~~l~~L~~L~l~~n~l~~~~  369 (562)
T 3a79_B          318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV---C-----------------------PPSPSSFTFLNFTQNVFTDSV  369 (562)
T ss_dssp             --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---C-----------------------CSSCCCCCEEECCSSCCCTTT
T ss_pred             --ecChhhhhhhhccCcceEEEccCCCccccc---C-----------------------ccCCCCceEEECCCCccccch
Confidence              112 1111   1134666666665543211   1                       123344555555555555444


Q ss_pred             chhhhcCCCCCeEeccCceecCC--CCccccCccccccccccccccccccc-cccccCCCCCEEeCCCCcCcccChhhhh
Q 041178          508 PVQLAKLFSLNKLILSLNQLSGG--MPFELGSLTELQYLDLSANKLRSWIP-KSIGNLLKLRYLNLSNNQFIQKIPIEVE  584 (725)
Q Consensus       508 ~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  584 (725)
                      |..+..+++|++|++++|++++.  +|..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++++.+|..+.
T Consensus       370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  449 (562)
T 3a79_B          370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP  449 (562)
T ss_dssp             TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred             hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence            55555555555555555555542  23445566666666666666665333 3466667777777777777666655443


Q ss_pred             cccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCcc-ccCCCCCCEEeCcCCCccccCCCC
Q 041178          585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC-FEGMHNLSHIDISYNELQGPIPNS  654 (725)
Q Consensus       585 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~  654 (725)
                        ++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|++|++++|++.+.+|..
T Consensus       450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence              57788888888875 566666688888888888888884 5554 888888999999999988877643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-43  Score=399.90  Aligned_cols=463  Identities=20%  Similarity=0.201  Sum_probs=316.9

Q ss_pred             CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178          106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA  185 (725)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (725)
                      ....+++++++|.+++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3445999999999986 776654  8999999999999988888999999999999999999988899999999999999


Q ss_pred             cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC--Cceeecccc
Q 041178          186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL--GILYLYSNS  262 (725)
Q Consensus       186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~  262 (725)
                      +++|.++ .+|..  .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            9999998 56666  89999999999999987 4578999999999999999999863   45556666  999999999


Q ss_pred             c--cccCCccccCCC-CCCEEEccCCccccccCC-CCCCCCCccEEEccCCcC-----cccCcccccCCCcccccccccc
Q 041178          263 L--SGPIPSVIGNLE-SLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSNSL-----SSFIPPILGNLKSLSALGLHIN  333 (725)
Q Consensus       263 l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l-----~~~~~~~l~~l~~L~~L~l~~n  333 (725)
                      +  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|..     .+. ...+..+++|+.+++.++
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCC
Confidence            9  888888887765 122567888888765543 356788999999999852     222 235677888888888877


Q ss_pred             cccccC----CccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCC
Q 041178          334 QLNGVI----PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG  409 (725)
Q Consensus       334 ~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  409 (725)
                      .+.+..    +..+ ..++|++|++++|.++|.+|..+....                   ...++.|+.+++..+.+  
T Consensus       260 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~-------------------~~~L~~L~~~~~~~~~~--  317 (562)
T 3a79_B          260 ETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYS-------------------ETALKSLMIEHVKNQVF--  317 (562)
T ss_dssp             EECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCC-------------------SCSCCEEEEEEEEECCC--
T ss_pred             cCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcc-------------------cccchheehhhccccee--
Confidence            665421    1111 224677777777777766666541100                   02233333333333333  


Q ss_pred             CCC-ccccC---CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCc
Q 041178          410 PIP-KSLRN---LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPL  485 (725)
Q Consensus       410 ~~p-~~l~~---l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~  485 (725)
                      .+| ..+..   ..+|+.|++++|.+.....  ...+++|++|++++|++++..|..+..+++|+.|++++|++++..  
T Consensus       318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--  393 (562)
T 3a79_B          318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--  393 (562)
T ss_dssp             SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--
T ss_pred             ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--
Confidence            122 11111   1345666666665542221  135566777777777666555555555554444444444443210  


Q ss_pred             cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCc-cccCccccccccccccccccccccccccCCC
Q 041178          486 EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLLK  564 (725)
Q Consensus       486 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  564 (725)
                                          .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+.  ++
T Consensus       394 --------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          394 --------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             --------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             --------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence                                1233445555566666666666553332 355667777777777777665554443  57


Q ss_pred             CCEEeCCCCcCcccChhhhhcccccccccccccccCccCccc-ccCCCCCCEEeCCCCccccccC
Q 041178          565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       565 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      |++|++++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|+.|++++|++.+..|
T Consensus       452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            778888888776 566666677888888888888864 4444 7788888888888888876544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2e-42  Score=358.45  Aligned_cols=292  Identities=29%  Similarity=0.494  Sum_probs=222.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc--cCcceeCCC---CCEEEEEcCCCCCcc-
Q 041178           23 SYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCA--WVGISCNQA---ERIISINLSSMGLNG-   96 (725)
Q Consensus        23 ~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~--w~gv~C~~~---~~v~~l~l~~~~l~~-   96 (725)
                      .|.++|++||++||+++.++  ..+++|.   .+           .+||.  |.||+|+..   ++|+.++++++.+.| 
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~--~~l~~W~---~~-----------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP--TTLSSWL---PT-----------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC--GGGTTCC---TT-----------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHhcCCc--ccccCCC---CC-----------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence            47889999999999999643  2688995   33           68998  999999853   789999999988887 


Q ss_pred             -ccCCcccCCCCCCcEEECCC-CCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcc
Q 041178           97 -TLQEFAFSSFPHLVHLNLSF-NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQE  174 (725)
Q Consensus        97 -~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  174 (725)
                       .++ ..+..+++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..
T Consensus        66 ~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           66 YPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence             676 5778888888888884 7777788888888888888888888888778888888888888888888887777777


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCCCcCCCC-CCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041178          175 IGQLSLINELALCHNNLYGPIPPSLGNLS-NLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL  253 (725)
Q Consensus       175 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  253 (725)
                      +.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+..+++|
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence            77788888888888877777777777776 777777777777777777777666 7777777777777777777777777


Q ss_pred             CceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccc
Q 041178          254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN  333 (725)
Q Consensus       254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  333 (725)
                      ++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|
T Consensus       224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred             CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence            7777777777655554 566667777777777776666666666777777777777776666654 56666666666666


Q ss_pred             c
Q 041178          334 Q  334 (725)
Q Consensus       334 ~  334 (725)
                      .
T Consensus       302 ~  302 (313)
T 1ogq_A          302 K  302 (313)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.8e-41  Score=368.52  Aligned_cols=387  Identities=21%  Similarity=0.208  Sum_probs=282.3

Q ss_pred             ceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC-cccccCCCcccccccccc
Q 041178          255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI-PPILGNLKSLSALGLHIN  333 (725)
Q Consensus       255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n  333 (725)
                      .++.+++.++ .+|. +  .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            3555555555 3444 2  256788888888887777777777888888888887776443 456777777777777777


Q ss_pred             cccccCCccCcCCCCCCEEEccCCcCccCCccc--ccCCCCCCEEECcCcccccccccc-ccCCCCCcEEEcCCCcCCCC
Q 041178          334 QLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE--IGYLKSIFELELCTNRLRGGIPHS-IGNLTELVLVNMCENHLSGP  410 (725)
Q Consensus       334 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~  410 (725)
                      ++.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            777776777777777777777777776644443  666777777777777777665654 66677777777777777766


Q ss_pred             CCccccCC--CCCcEEECcCccccccccccc--------cCCCCCCEEeCcCCccccccCccccCC---CCCcEEECCCC
Q 041178          411 IPKSLRNL--TSLERVRFNQNNLSGKVYEAF--------GYHPNLTFLDLSQNNFYGEISFNWRNF---PKLGTFIVSMN  477 (725)
Q Consensus       411 ~p~~l~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~l~~n  477 (725)
                      .+..+..+  .+|+.+++++|.+.+..+..+        ..+++|++|++++|++++..+..+...   ++++.|++++|
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            66666554  456666666666655443322        233455555555555555444433222   44555555554


Q ss_pred             cccccCCccccccCCCcEEEccCCcccccCchhhhc--CCCCCeEeccCceecCCCCccccCcccccccccccccccccc
Q 041178          478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAK--LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI  555 (725)
Q Consensus       478 ~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  555 (725)
                      ...+..              +..+.+.+..+..+..  .++|++|++++|.+++..|..+..+++|++|++++|++.+..
T Consensus       250 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          250 YNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             cccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            433211              0111222222233333  368999999999999999999999999999999999999988


Q ss_pred             ccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCC
Q 041178          556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMH  635 (725)
Q Consensus       556 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  635 (725)
                      |..|.++++|++|++++|.+.+..|..++.+++|++|+|++|.+++..|..+..+++|++|++++|++++..+..|..++
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999987777889999


Q ss_pred             CCCEEeCcCCCccccCCCCCCcCc
Q 041178          636 NLSHIDISYNELQGPIPNSTTFKD  659 (725)
Q Consensus       636 ~L~~L~ls~N~l~g~ip~~~~~~~  659 (725)
                      +|++|++++|++++.+|....+..
T Consensus       396 ~L~~L~l~~N~l~~~~~~~~~l~~  419 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCPRIDYLSR  419 (455)
T ss_dssp             TCCEEECCSSCBCCCTTTTHHHHH
T ss_pred             cccEEEccCCCcccCCCcchHHHH
Confidence            999999999999999996554433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-41  Score=367.62  Aligned_cols=421  Identities=26%  Similarity=0.269  Sum_probs=218.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178          129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF  208 (725)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  208 (725)
                      ..++|++|++++|.+ |.+|.+++++++|++|++++|.+.|.+|.+++++++|+.+++..|..           .++++|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence            357788888888888 67787888888888888888887777787777777766665555431           356677


Q ss_pred             EccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccc
Q 041178          209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      ++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|+++
T Consensus        77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred             EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence            777776654 3331   2567777777777775 5543   3667777777777764 2221   157778888888777


Q ss_pred             cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCccccc
Q 041178          289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG  368 (725)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  368 (725)
                      + +| .++++++|++|++++|++++ +|..+   ++|++|++++|++++ +| .+..+++|+.|++++|.+++ +|..  
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--  213 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--  213 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence            5 56 47777778888887777776 34332   466777777777664 44 46666677777777766654 2221  


Q ss_pred             CCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEE
Q 041178          369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL  448 (725)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  448 (725)
                       .++|++|++++|.++ .+| .+..+++|+.|++++|.+++ +|..                           .++|++|
T Consensus       214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L  262 (454)
T 1jl5_A          214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---------------------------PPSLEAL  262 (454)
T ss_dssp             -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---------------------------CTTCCEE
T ss_pred             -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---------------------------ccccCEE
Confidence             135555566555555 344 24555555555555555543 2221                           2445555


Q ss_pred             eCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcC-CCCCeEeccCcee
Q 041178          449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL-FSLNKLILSLNQL  527 (725)
Q Consensus       449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~L~~L~L~~n~l  527 (725)
                      ++++|++++ +|..   +++|+.|++++|++++. |.   ..++|++|++++|++++. +    .+ ++|++|++++|++
T Consensus       263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKL  329 (454)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCC
T ss_pred             ECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcc
Confidence            555555543 2221   24555556655555541 11   014677777777776642 1    22 4788888888888


Q ss_pred             cCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcc--cChhhhhcccccccccccccccCccCcc
Q 041178          528 SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPF  605 (725)
Q Consensus       528 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  605 (725)
                      ++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|.+++.+        +.|.+.+.+|.
T Consensus       330 ~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~  393 (454)
T 1jl5_A          330 IE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE  393 (454)
T ss_dssp             SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------
T ss_pred             cc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc
Confidence            75 5543   5788888888888886 555   46889999999999888  677765543        44667777775


Q ss_pred             cccCCCCCCEEeCCCCcccc--ccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          606 QICNMKSLEKLNLCHNNLSG--FIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       606 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      .   +++|++|++++|++++  .+|.+      ++.|.+.+|.+.+.+|.
T Consensus       394 ~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          394 L---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             --------------------------------------------------
T ss_pred             c---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            3   5789999999999987  66654      56667888888887764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-40  Score=364.16  Aligned_cols=382  Identities=23%  Similarity=0.191  Sum_probs=265.3

Q ss_pred             EEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC-CccccCCCCCCEEEccCC
Q 041178          207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI-PSVIGNLESLLQLDLSEN  285 (725)
Q Consensus       207 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n  285 (725)
                      .++.+++.+. .+|. +  .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            4555555553 3443 2  256777777777777666666777777777777777665443 445666777777777777


Q ss_pred             ccccccCCCCCCCCCccEEEccCCcCcccCccc--ccCCCcccccccccccccccCCcc-CcCCCCCCEEEccCCcCccC
Q 041178          286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI--LGNLKSLSALGLHINQLNGVIPSS-IGNLSNLRLLYLYNNGFYGF  362 (725)
Q Consensus       286 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~  362 (725)
                      ++++..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|++.+..|.. +.++++|++|++++|.+.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            776666666666677777777766666543332  555555666666655555544443 45555555555555555555


Q ss_pred             CcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCcc--------ccCCCCCcEEECcCcccccc
Q 041178          363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS--------LRNLTSLERVRFNQNNLSGK  434 (725)
Q Consensus       363 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~l~~n~l~~~  434 (725)
                      .+..+..+.                      ..+|+.+++++|.+.+..+..        +..+++|+.|++++|++++.
T Consensus       170 ~~~~l~~l~----------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          170 CEEDLLNFQ----------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             CTTTSGGGT----------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             Chhhhhccc----------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence            444443330                      034445555555444433222        22456677777777777666


Q ss_pred             ccccccC---CCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCch
Q 041178          435 VYEAFGY---HPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPV  509 (725)
Q Consensus       435 ~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~  509 (725)
                      .+..+..   .++|+.|++++|...+...              ..+.+.+..+..+.  ..++|++|++++|.+.+..|.
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             chhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchh
Confidence            6655433   3677788888776654321              11112222222222  236899999999999988899


Q ss_pred             hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178          510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL  589 (725)
Q Consensus       510 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  589 (725)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            99999999999999999998888899999999999999999999888999999999999999999999999999999999


Q ss_pred             ccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178          590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       590 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      ++|+|++|++++..+..+..+++|++|++++|++++..|
T Consensus       374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999988777788999999999999999998877

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.1e-40  Score=355.36  Aligned_cols=415  Identities=25%  Similarity=0.290  Sum_probs=190.9

Q ss_pred             cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCC-------------CEEEccCCcCCC
Q 041178          103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL-------------RSLYFDVNQLHG  169 (725)
Q Consensus       103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~  169 (725)
                      -.+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++++|             ++|++++|.+++
T Consensus         7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            34568999999999999 8999999999999999999999999999999999876             666666666653


Q ss_pred             CCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccC
Q 041178          170 PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN  249 (725)
Q Consensus       170 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  249 (725)
                       +|..   .++|++|++++|.+++ +|+.   .++|++|++++|.+.+ +|..   .++|++|++++|++++ +| .+++
T Consensus        86 -lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           86 -LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             -CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             -CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence             2321   2456666666666664 4432   2556666666665543 2211   1456666666666654 44 3555


Q ss_pred             CCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccc
Q 041178          250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG  329 (725)
Q Consensus       250 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  329 (725)
                      +++|++|++++|.+++ +|..+   .+|++|++++|++++ +| .++++++|++|++++|.+++ +|...   ++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEE
Confidence            6666666666665553 33322   355566666555554 33 35555555555555555554 22211   3455555


Q ss_pred             cccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCC
Q 041178          330 LHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG  409 (725)
Q Consensus       330 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  409 (725)
                      +++|.+. .+| .+..+++|++|++++|++++                         +|..   .++|+.|++++|.+++
T Consensus       222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-------------------------l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-------------------------LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-------------------------CCSC---CTTCCEEECCSSCCSC
T ss_pred             CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-------------------------cccc---ccccCEEECCCCcccc
Confidence            5555544 333 24445555555555554443                         2221   2445555555555544


Q ss_pred             CCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccc
Q 041178          410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE  489 (725)
Q Consensus       410 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~  489 (725)
                       +|..   .++|+.|++++|++++...    ..++|++|++++|++++. +.   ..++|+.|++++|++++ +|..   
T Consensus       272 -l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---  335 (454)
T 1jl5_A          272 -LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---  335 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred             -cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---
Confidence             2322   2455566666665554211    114666666666666542 11   11466777777777664 4443   


Q ss_pred             cCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC--CCCccccCccccccccccccccccccccccccCCCCCE
Q 041178          490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY  567 (725)
Q Consensus       490 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  567 (725)
                      +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..+..        ++.|.+.+.+|..   +++|++
T Consensus       336 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~  400 (454)
T 1jl5_A          336 PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ  400 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------------
T ss_pred             CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE
Confidence            4677777777777764 444   36778888888888876  55655432        2345555655542   467888


Q ss_pred             EeCCCCcCcc--cChhhhhcccccccccccccccCccCcccccC
Q 041178          568 LNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN  609 (725)
Q Consensus       568 L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  609 (725)
                      |++++|++++  .+|.      +++.|.+.+|.+.+.+|.....
T Consensus       401 L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          401 LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             --------------------------------------------
T ss_pred             EECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence            8888888876  5664      3556677888887776655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.4e-38  Score=341.13  Aligned_cols=210  Identities=19%  Similarity=0.201  Sum_probs=121.3

Q ss_pred             ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178          102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI  181 (725)
Q Consensus       102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  181 (725)
                      .++.+++|++|++++|.+.+. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. |  ++++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            456667777777777777653 4 567777777777777777753 3  66677777777777776653 2  6666777


Q ss_pred             CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccc
Q 041178          182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN  261 (725)
Q Consensus       182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  261 (725)
                      ++|++++|.+++. |  +..+++|++|++++|.+++. +  ++.+++|++|++++|...+.+  .++.+++|++|++++|
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            7777777766652 2  56666666666666666552 2  556666666666666443333  2445555555555555


Q ss_pred             cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178          262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN  336 (725)
Q Consensus       262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (725)
                      .+++ +|  ++.+++|++|++++|++++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|+++
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            5554 22  44555555555555555432   24444555555555555444 22  344444444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.6e-38  Score=341.57  Aligned_cols=365  Identities=17%  Similarity=0.162  Sum_probs=233.8

Q ss_pred             CCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCC
Q 041178          119 VFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS  198 (725)
Q Consensus       119 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  198 (725)
                      ..+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence            3445556788889999999999998864 5 688899999999999988864 3  78888889999988888864 3  


Q ss_pred             cCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCC
Q 041178          199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL  278 (725)
Q Consensus       199 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  278 (725)
                      ++++++|++|++++|.+.+ +|  ++.+++|++|++++|++++.   .++.+++|++|++++|...+.+  .++.+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            7788888888888888866 33  77888888888888888763   3677777777777777555444  366677777


Q ss_pred             EEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCc
Q 041178          279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG  358 (725)
Q Consensus       279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  358 (725)
                      +|++++|++++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +..+++|+.|++++|+
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            77777777765 33  56667777777777776664   25555666666666666654 33  5555555666665555


Q ss_pred             CccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccccccccc
Q 041178          359 FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA  438 (725)
Q Consensus       359 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~  438 (725)
                      +++..   +..+++|+.|++++|              +                        |+.+++++|.+.+.+|  
T Consensus       245 l~~~~---~~~l~~L~~L~l~~n--------------~------------------------L~~L~l~~n~~~~~~~--  281 (457)
T 3bz5_A          245 LTELD---VSTLSKLTTLHCIQT--------------D------------------------LLEIDLTHNTQLIYFQ--  281 (457)
T ss_dssp             CSCCC---CTTCTTCCEEECTTC--------------C------------------------CSCCCCTTCTTCCEEE--
T ss_pred             CCCcC---HHHCCCCCEEeccCC--------------C------------------------CCEEECCCCccCCccc--
Confidence            55432   223344444444332              2                        2333444444443333  


Q ss_pred             ccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCC
Q 041178          439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLN  518 (725)
Q Consensus       439 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  518 (725)
                      +..+++|++|++++|...+.+|.   ..++|+.+++++|             ++|++|++++|++++. +  +..+++|+
T Consensus       282 ~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~  342 (457)
T 3bz5_A          282 AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK  342 (457)
T ss_dssp             CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred             ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence            23445555555555555544443   2233444433332             4566666666666653 2  56666677


Q ss_pred             eEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhh
Q 041178          519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV  583 (725)
Q Consensus       519 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  583 (725)
                      .|++++|++++        ++.|+.|++++|.+.|.     ..+..|+.+++++|+++|.+|..+
T Consensus       343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            77777776664        24556666777766663     234456666666666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.3e-36  Score=330.43  Aligned_cols=346  Identities=28%  Similarity=0.385  Sum_probs=211.5

Q ss_pred             CCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccc
Q 041178          249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL  328 (725)
Q Consensus       249 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  328 (725)
                      .+++++.|++.++.+.. +| .+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+  +..+++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            35667777777777663 34 36667777777777777765433  6777777777777777766544  6667777777


Q ss_pred             ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178          329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS  408 (725)
Q Consensus       329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  408 (725)
                      ++++|.+++..+  +..+++|++|++++|.+.+. + .+..+++|++|++. |.+.+..  .+..+++|+.|++++|.++
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            777777664322  66667777777777666542 2 35566666666664 3333222  1555555555555555554


Q ss_pred             CCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc
Q 041178          409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG  488 (725)
Q Consensus       409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~  488 (725)
                      +.  ..+..+++|+.|++++|.+++..+                          ++.+++|+.|++++|.+.+.  ..+.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~--~~l~  240 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQLKDI--GTLA  240 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--------------------------ccccCCCCEEECCCCCcccc--hhhh
Confidence            32  224444555555555554444333                          33444555555555544432  2345


Q ss_pred             ccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEE
Q 041178          489 ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYL  568 (725)
Q Consensus       489 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  568 (725)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..+  +..+++|++|
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            55666666666666655444  5566666666666666664333  5666667777777776666433  5666777777


Q ss_pred             eCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178          569 NLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       569 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  648 (725)
                      ++++|++++..|  ++.+++|++|++++|.+++.  ..+.++++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            777777666554  56667777777777777554  256677777777777777776665  666777777777777776


Q ss_pred             c
Q 041178          649 G  649 (725)
Q Consensus       649 g  649 (725)
                      +
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-35  Score=325.32  Aligned_cols=347  Identities=29%  Similarity=0.400  Sum_probs=216.1

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      ..++++++|+++++.+.. +| .+..+++|++|++++|.+++..|  +.++++|++|++++|.+.+..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346788999999988874 55 47788899999999998885543  8888888999888888886544  788888888


Q ss_pred             EEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178          208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL  287 (725)
Q Consensus       208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  287 (725)
                      |++++|.+.+..+  +..+++|++|++++|.+++. + .+..+++|++|++. |.+.+..  .+.++++|++|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            8888888766433  77888888888888877742 2 47777777777775 3443322  266677777777777766


Q ss_pred             ccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccc
Q 041178          288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI  367 (725)
Q Consensus       288 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  367 (725)
                      ++.  ..+..+++|++|++++|.+++..+  ++.+++|+.|++++|++.+.  ..+..+++|+.|++++|.+.+.     
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-----  258 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-----  258 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-----
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-----
Confidence            532  235556666666666666655433  44455555555555555432  2344444444444444444433     


Q ss_pred             cCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCE
Q 041178          368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTF  447 (725)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  447 (725)
                                         .+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++
T Consensus       259 -------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          259 -------------------AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             -------------------GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             -------------------hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence                               22  3444445555555554443322  4445555555555555544333  445556666


Q ss_pred             EeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCcee
Q 041178          448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQL  527 (725)
Q Consensus       448 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  527 (725)
                      |++++|++++..+  +..+++|+.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            6666665555443  44555666666666655543  345566666666776666666655  66666777777777776


Q ss_pred             cC
Q 041178          528 SG  529 (725)
Q Consensus       528 ~~  529 (725)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=339.31  Aligned_cols=322  Identities=20%  Similarity=0.211  Sum_probs=175.1

Q ss_pred             cEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCc
Q 041178          302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN  381 (725)
Q Consensus       302 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  381 (725)
                      +.++.+++.++. +|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            355666665554 343332  45666666666666655666666666666666666666665666666666666666666


Q ss_pred             cccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCc
Q 041178          382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF  461 (725)
Q Consensus       382 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  461 (725)
                      .+++..+..|.++++|+.|++++|.+.+..+..+.++++|+.|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            66644444555566666666666666555555555556666666666655555555555555555555555555544444


Q ss_pred             cccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccc
Q 041178          462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL  541 (725)
Q Consensus       462 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  541 (725)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|+++             
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------------  237 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-------------  237 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-------------
Confidence            4555555555555555555544445555555555555555544444444333344455555554444             


Q ss_pred             ccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178          542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN  621 (725)
Q Consensus       542 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  621 (725)
                                 +..+..+..+++|++|+|++|++.+..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus       238 -----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          238 -----------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             -----------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             -----------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence                       433334444455555555555544444444444555555555555554444445555555555555555


Q ss_pred             ccccccCccccCCCCCCEEeCcCCCcccc
Q 041178          622 NLSGFIPRCFEGMHNLSHIDISYNELQGP  650 (725)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  650 (725)
                      ++++..+..|..+++|++|++++|++.+.
T Consensus       307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          307 QLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            55544444445555555555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=327.24  Aligned_cols=320  Identities=22%  Similarity=0.188  Sum_probs=176.9

Q ss_pred             ceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccc
Q 041178          255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ  334 (725)
Q Consensus       255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  334 (725)
                      .++.+++.++ .+|..+.  +++++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3444445444 3444332  356666666666665555566666666666666666665555556666666666666666


Q ss_pred             ccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCcc
Q 041178          335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS  414 (725)
Q Consensus       335 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  414 (725)
                      +++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            55444444555555666666555555555555555555555555555555544555555555555555555555444444


Q ss_pred             ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178          415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ  494 (725)
Q Consensus       415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~  494 (725)
                      +.++++|+.|++++|.+.+..+..                        +..+++|+.|++++|...+.+|.......+|+
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  227 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYS------------------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT  227 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTC------------------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred             hcccCCCcEEeCCCCcCcEeChhh------------------------cccCcccceeeCCCCccccccCcccccCcccc
Confidence            444555555555555444444444                        44445555555554444444444444444566


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCc
Q 041178          495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ  574 (725)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  574 (725)
                      +|++++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++.+..|..|.++++|++|++++|+
T Consensus       228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            66666665554444455556666666666666655555555556666666666666665555556666666666666666


Q ss_pred             CcccChhhhhcccccccccccccccCc
Q 041178          575 FIQKIPIEVEKLIHLSKLDLSYNFLGK  601 (725)
Q Consensus       575 l~~~~p~~~~~l~~L~~L~Ls~N~l~~  601 (725)
                      +++..+..|..+++|++|+|++|.+..
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CceeCHhHcCCCcccCEEEccCCCccC
Confidence            655555555555666666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-34  Score=310.07  Aligned_cols=290  Identities=19%  Similarity=0.183  Sum_probs=221.1

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      ..++++++|+++++.+....+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..++++++|++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            45789999999999887665566889999999999999999888889999999999999999999888888999999999


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      |++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            99999999855555568999999999999999888888899999999999999998854   366778888899888887


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC
Q 041178          264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI  343 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  343 (725)
                      ++.     ...++|++|++++|.+... |..  ..++|++|++++|.+++.  .++..+++|++|++++|.+.+..|..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            642     3345788888888888754 332  246788888888877764  456667777777777777776666667


Q ss_pred             cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178          344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS  408 (725)
Q Consensus       344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  408 (725)
                      ..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus       269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence            777777777777776654 2334445556666666666555 34444445555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.2e-34  Score=321.84  Aligned_cols=311  Identities=18%  Similarity=0.198  Sum_probs=238.2

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      ..+++++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            35689999999999987776777899999999999999999888889999999999999999999888888999999999


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      |++++|.+++..+..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++.   .++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99999999966666678999999999999999988888899999999999999999864   356778899999998887


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC
Q 041178          264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI  343 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  343 (725)
                      ++     +...++|+.|++++|.++...+ .+  .++|+.|++++|.+++.  .++..+++|+.|++++|.+.+..|..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            64     2344678888888888875433 22  26788888888888763  566777777777777777777777777


Q ss_pred             cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcE
Q 041178          344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLER  423 (725)
Q Consensus       344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  423 (725)
                      ..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..   +..+++|+.
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence            777777777777777765 3444455666666666666665 45555555666666666666555331   333444444


Q ss_pred             EECcCcccc
Q 041178          424 VRFNQNNLS  432 (725)
Q Consensus       424 L~l~~n~l~  432 (725)
                      |++++|.+.
T Consensus       350 L~l~~N~~~  358 (597)
T 3oja_B          350 LTLSHNDWD  358 (597)
T ss_dssp             EECCSSCEE
T ss_pred             EEeeCCCCC
Confidence            444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.3e-35  Score=301.68  Aligned_cols=255  Identities=26%  Similarity=0.428  Sum_probs=191.7

Q ss_pred             CCcEEECcCccccc--cccccccCCCCCCEEeCcC-CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEE
Q 041178          420 SLERVRFNQNNLSG--KVYEAFGYHPNLTFLDLSQ-NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL  496 (725)
Q Consensus       420 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  496 (725)
                      +++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34455555555554  4555555555566666653 55555566666666666666666666666666666777777777


Q ss_pred             EccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcc-ccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178          497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT-ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF  575 (725)
Q Consensus       497 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  575 (725)
                      ++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            7777777777777777777777777777777777777777776 788888888888877788887776 88888888888


Q ss_pred             cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCC
Q 041178          576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST  655 (725)
Q Consensus       576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~  655 (725)
                      ++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|...
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            888888888888888888888888777765 7788899999999999998899999999999999999999999999876


Q ss_pred             CcCce---eccCCCCCCCCCCCCCCC
Q 041178          656 TFKDA---RMEGNKGLCGNIKGLPSC  678 (725)
Q Consensus       656 ~~~~~---~~~gn~~lc~~~~~~~~c  678 (725)
                      .+..+   .+.||+++||.|.  +.|
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p~--~~C  312 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSPL--PAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred             cccccChHHhcCCCCccCCCC--CCC
Confidence            55544   7889999999774  455

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5e-34  Score=305.80  Aligned_cols=332  Identities=20%  Similarity=0.234  Sum_probs=210.5

Q ss_pred             CCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEE
Q 041178          298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE  377 (725)
Q Consensus       298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  377 (725)
                      +++++.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46677777777777665555566677777777777777666556677777777777777776666666666666666666


Q ss_pred             CcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc
Q 041178          378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG  457 (725)
Q Consensus       378 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  457 (725)
                      +++|.++...+..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..   +..+++|+++++++|.   
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~---  197 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL---  197 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC---
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc---
Confidence            6666666333333455666666666666665555555555555555555555554431   2233444555555444   


Q ss_pred             ccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccC
Q 041178          458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS  537 (725)
Q Consensus       458 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  537 (725)
                                           +++     +...++|++|++++|.+.....   ...++|+.|++++|.+++.  ..+..
T Consensus       198 ---------------------l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~  246 (390)
T 3o6n_A          198 ---------------------LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN  246 (390)
T ss_dssp             ---------------------CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred             ---------------------ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence                                 432     1222356666666666553322   1235677777777777643  45677


Q ss_pred             ccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEe
Q 041178          538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN  617 (725)
Q Consensus       538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  617 (725)
                      +++|++|++++|.+.+..|..+..+++|++|++++|++++ +|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence            7777777777777777777777777788888888887764 4555667778888888888875 4566677788888888


Q ss_pred             CCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--CCcCceeccCCCCCCCC
Q 041178          618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--TTFKDARMEGNKGLCGN  671 (725)
Q Consensus       618 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~gn~~lc~~  671 (725)
                      +++|+++.. |  +..+++|++|++++|++.+.....  ..+....+.+++..|..
T Consensus       325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred             CCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence            888888744 3  667788888888888887643211  11222245666666754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.1e-34  Score=323.31  Aligned_cols=333  Identities=20%  Similarity=0.218  Sum_probs=221.6

Q ss_pred             CCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEE
Q 041178          298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE  377 (725)
Q Consensus       298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  377 (725)
                      +++++.+++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46677777877777776666667777777777777777766666777777777777777777776666666777777777


Q ss_pred             CcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc
Q 041178          378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG  457 (725)
Q Consensus       378 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~  457 (725)
                      +++|.+++..+..|..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..   +..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            7777666444444566666666666666666655555666666666666666555432   2234455555555554432


Q ss_pred             ccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccC
Q 041178          458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS  537 (725)
Q Consensus       458 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  537 (725)
                      .                             ...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..
T Consensus       207 l-----------------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~  252 (597)
T 3oja_B          207 L-----------------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN  252 (597)
T ss_dssp             E-----------------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred             c-----------------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence            1                             22335566666666554332221   2467777777777765  355677


Q ss_pred             ccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEe
Q 041178          538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN  617 (725)
Q Consensus       538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  617 (725)
                      +++|++|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            7777777887777777777777778888888888887765 4556667778888888888885 5666777788888888


Q ss_pred             CCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--CCcCceeccCCCCCCCCC
Q 041178          618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--TTFKDARMEGNKGLCGNI  672 (725)
Q Consensus       618 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~gn~~lc~~~  672 (725)
                      |++|++++. |  +..+++|++|++++|++.+..+..  ..+....+.+++..|+.+
T Consensus       331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence            888888754 2  566778888888888887654321  112222567888888753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1e-34  Score=302.45  Aligned_cols=284  Identities=19%  Similarity=0.268  Sum_probs=197.4

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCc
Q 041178           22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEF  101 (725)
Q Consensus        22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~  101 (725)
                      +++..+|++||++||+++..++.+.+.+|....          ....++|.|.|+.|+...             ..   .
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~----------~~~~~~~~~~g~~~~~~~-------------~~---l   75 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----------SNNPQIETRTGRALKATA-------------DL---L   75 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT----------TTCTTSCCSHHHHHHHHH-------------HH---H
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccc----------cccccccccCCcchhhhH-------------HH---H
Confidence            345678999999999998656544556672000          112689999999995210             00   0


Q ss_pred             ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178          102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI  181 (725)
Q Consensus       102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  181 (725)
                      .-...+++++|++++|.+. .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|
T Consensus        76 ~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L  152 (328)
T 4fcg_A           76 EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL  152 (328)
T ss_dssp             HHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred             hcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence            0112345555555555554 45555555666666666666666 55666666666666666666665 556666666666


Q ss_pred             CEEEcCCCcCCCCCCCCcC---------CCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 041178          182 NELALCHNNLYGPIPPSLG---------NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN  252 (725)
Q Consensus       182 ~~L~L~~n~l~~~~p~~l~---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  252 (725)
                      ++|++++|++.+.+|..+.         .+++|++|++++|.+. .+|..++.+++|++|++++|.+++ +|..++.+++
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~  230 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK  230 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC
Confidence            6666666666666665544         3788888888888776 677778888888888888888874 5667788888


Q ss_pred             CCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccc
Q 041178          253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI  332 (725)
Q Consensus       253 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  332 (725)
                      |++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888776


Q ss_pred             cccc
Q 041178          333 NQLN  336 (725)
Q Consensus       333 n~l~  336 (725)
                      +.+.
T Consensus       311 ~~~~  314 (328)
T 4fcg_A          311 HLQA  314 (328)
T ss_dssp             GGSC
T ss_pred             HHHH
Confidence            6554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.7e-33  Score=291.37  Aligned_cols=306  Identities=23%  Similarity=0.360  Sum_probs=197.6

Q ss_pred             CCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCE
Q 041178          296 GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFE  375 (725)
Q Consensus       296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  375 (725)
                      ..+++|++|+++++.+... + .+..+++|++|++++|++++. +. +..+++|++|++++|.+++.  ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            3456677777777766553 2 355666666666666666533 22 56666666666666665542  23555555555


Q ss_pred             EECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcc
Q 041178          376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF  455 (725)
Q Consensus       376 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  455 (725)
                      |++++|.+.+..+  +..+++|+.+++++|.....++.                         +..+++|++|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-------------------------~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-------------------------LSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-------------------------GTTCTTCCEEECCSSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCcccccc-------------------------hhhCCCCcEEEecCCCc
Confidence            5555555553222  44455555555555533332222                         44455555555555555


Q ss_pred             ccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccc
Q 041178          456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL  535 (725)
Q Consensus       456 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  535 (725)
                      .+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            43322  4555566666666665553322  5666777777777777765544  6677778888888887775433  6


Q ss_pred             cCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCE
Q 041178          536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK  615 (725)
Q Consensus       536 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  615 (725)
                      ..+++|++|++++|.+++.  +.+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..|..++.+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            7778888888888887763  4577888888888888887654  35778888888888888888888888888888888


Q ss_pred             EeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178          616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       616 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  648 (725)
                      |++++|++++..|  +..+++|++|++++|+++
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888887666  778888888888888874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.6e-32  Score=287.74  Aligned_cols=307  Identities=25%  Similarity=0.381  Sum_probs=235.6

Q ss_pred             ccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCC
Q 041178          271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR  350 (725)
Q Consensus       271 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  350 (725)
                      +..+++|++|+++++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence            4578899999999999974 44 48889999999999999988644  8999999999999999985 3 3699999999


Q ss_pred             EEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcc
Q 041178          351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN  430 (725)
Q Consensus       351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  430 (725)
                      +|++++|.+.+..+  +..+++|+.|++++|.....++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            99999999986533  8899999999999997665544 48889999999999998876543  6667777777777776


Q ss_pred             ccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchh
Q 041178          431 LSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ  510 (725)
Q Consensus       431 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  510 (725)
                      +.+..+  +..+++|+++++++|.+.+..+                          +..+++|++|++++|++++..+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCcc--
Confidence            664433  4555666666666655543322                          4455566666666666654433  


Q ss_pred             hhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccc
Q 041178          511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS  590 (725)
Q Consensus       511 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  590 (725)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++.+..|..++.+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            66677777777777777643  3567778888888888888774  3578888888889988888888888888888899


Q ss_pred             cccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178          591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       591 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      +|++++|.+++..|  +..+++|++|++++|+++
T Consensus       315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999998877666  778889999999998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=5.6e-31  Score=275.48  Aligned_cols=226  Identities=25%  Similarity=0.302  Sum_probs=119.2

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            56666777766666655666666666666666666666666666666666666666666665 4444433  55666666


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCC--ccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLF--DSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS  264 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (725)
                      ++|.+.+..+..+..+++|++|++++|.+.  +..|..+..+ +|++|++++|.+++ +|..+.  +             
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~-------------  193 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E-------------  193 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S-------------
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--C-------------
Confidence            666655444444555555555555555553  2334444444 45555555554442 232221  3             


Q ss_pred             ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCc
Q 041178          265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG  344 (725)
Q Consensus       265 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  344 (725)
                                 +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus       194 -----------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          194 -----------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             -----------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             -----------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence                       4444444444444433344444444444444444444444444444444444444444444 3444444


Q ss_pred             CCCCCCEEEccCCcCccCCc
Q 041178          345 NLSNLRLLYLYNNGFYGFVP  364 (725)
Q Consensus       345 ~l~~L~~L~L~~n~l~~~~~  364 (725)
                      .+++|+.|++++|++++..+
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCT
T ss_pred             cCccCCEEECCCCCCCccCh
Confidence            45555555555555544333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1.4e-30  Score=272.39  Aligned_cols=232  Identities=25%  Similarity=0.337  Sum_probs=121.0

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            45666666666666555555666666666666666666555666666666666666666555 3343332  44555555


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP  266 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (725)
                      ++|.+.+..+..+.++++|++|++++|.+..                      .+..+..+..+++|++|++++|.++. 
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhccCCCCcCEEECCCCcccc-
Confidence            5555444333334444444444444444421                      11333344444444444444444442 


Q ss_pred             CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCC
Q 041178          267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL  346 (725)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  346 (725)
                      +|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            232222  44555555555555444455555555555555555555544445555555555555555555 445555555


Q ss_pred             CCCCEEEccCCcCccCCcccc
Q 041178          347 SNLRLLYLYNNGFYGFVPEEI  367 (725)
Q Consensus       347 ~~L~~L~L~~n~l~~~~~~~l  367 (725)
                      ++|++|++++|++++..+..+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSS
T ss_pred             CCcCEEECCCCcCCccChhhc
Confidence            556666666665554444333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=6.8e-31  Score=274.85  Aligned_cols=267  Identities=22%  Similarity=0.242  Sum_probs=176.8

Q ss_pred             CCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCc
Q 041178          372 SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLS  451 (725)
Q Consensus       372 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  451 (725)
                      +++.|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|+.|++++|+++.. |..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEEECC
Confidence            344444444444433333444444444444444444444444444444444444444444422 22211  455566666


Q ss_pred             CCccccccCccccCCCCCcEEECCCCccc--ccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC
Q 041178          452 QNNFYGEISFNWRNFPKLGTFIVSMNNIS--GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG  529 (725)
Q Consensus       452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  529 (725)
                      +|++.+..+..+..+++|+.|++++|.++  +..+..+..+ +|++|++++|++++ +|..+.  ++|++|++++|.+++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA  207 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence            66555544444556666666666666654  2445555555 77777777777765 343332  678888888888887


Q ss_pred             CCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccC
Q 041178          530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN  609 (725)
Q Consensus       530 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  609 (725)
                      ..+..+..+++|++|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            77788888889999999999888877778888899999999999887 77878888899999999999988776666654


Q ss_pred             ------CCCCCEEeCCCCccc--cccCccccCCCCCCEEeCcCCC
Q 041178          610 ------MKSLEKLNLCHNNLS--GFIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       610 ------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  646 (725)
                            ..+|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  367899999999887  6677888999999999998885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.8e-30  Score=270.01  Aligned_cols=295  Identities=20%  Similarity=0.242  Sum_probs=187.1

Q ss_pred             CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc
Q 041178          132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN  211 (725)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  211 (725)
                      ++++++++++.++ .+|..+.  ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            3444555544444 3343332  455555555555554444455555556666665555555555556666666666666


Q ss_pred             CCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc--cCCccccCCCCCCEEEccCCcccc
Q 041178          212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG--PIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       212 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      +|.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..+.++++|++|++++|.++ 
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            66654 3443332  677888888888776666667888888888888888753  66777888899999999999887 


Q ss_pred             ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC
Q 041178          290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY  369 (725)
Q Consensus       290 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  369 (725)
                      .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            4555543  78888888888888777777777778888888888777666667777777777777777776 45666666


Q ss_pred             CCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccc--cccccccCCCCCCE
Q 041178          370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG--KVYEAFGYHPNLTF  447 (725)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~  447 (725)
                      +++|++|++++|++++..+..|....                  .......++.+++++|.+..  ..+..|..+++++.
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeE
Confidence            66777777777766654444443210                  00112455566666665542  34455666666777


Q ss_pred             EeCcCCc
Q 041178          448 LDLSQNN  454 (725)
Q Consensus       448 L~ls~n~  454 (725)
                      +++++|+
T Consensus       324 l~L~~N~  330 (330)
T 1xku_A          324 VQLGNYK  330 (330)
T ss_dssp             EEC----
T ss_pred             EEecccC
Confidence            7776653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1e-34  Score=318.83  Aligned_cols=379  Identities=18%  Similarity=0.094  Sum_probs=194.4

Q ss_pred             CCCCceeeccccccccCCcc-ccCCCCCCEEEccCCcccc----ccCCCCCCCCCccEEEccCCcCcccCcccc-cCCC-
Q 041178          251 SNLGILYLYSNSLSGPIPSV-IGNLESLLQLDLSENQLSG----SIPISLGNLSSLTVMSLFSNSLSSFIPPIL-GNLK-  323 (725)
Q Consensus       251 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~-  323 (725)
                      ++|++|++++|.++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45667777777665433222 4556667777777766653    223444555666666666666554322222 1222 


Q ss_pred             ---cccccccccccccc----cCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCC
Q 041178          324 ---SLSALGLHINQLNG----VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTE  396 (725)
Q Consensus       324 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  396 (725)
                         +|++|++++|+++.    .++..+..+++|++|++++|.+.+..+..+..                   ......++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~  143 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQCR  143 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCCc
Confidence               35555555555442    23444444445555555544443322211110                   00111233


Q ss_pred             CcEEEcCCCcCCCC----CCccccCCCCCcEEECcCcccccccccccc-----CCCCCCEEeCcCCccccc----cCccc
Q 041178          397 LVLVNMCENHLSGP----IPKSLRNLTSLERVRFNQNNLSGKVYEAFG-----YHPNLTFLDLSQNNFYGE----ISFNW  463 (725)
Q Consensus       397 L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~~~~~  463 (725)
                      |+.|++++|.+++.    ++..+..+++|+.|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            44444444444432    123333445555555555554433322221     234555555555555542    23344


Q ss_pred             cCCCCCcEEECCCCcccccC-----CccccccCCCcEEEccCCccccc----CchhhhcCCCCCeEeccCceecCCCCcc
Q 041178          464 RNFPKLGTFIVSMNNISGSI-----PLEIGESFKLQVLDISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGGMPFE  534 (725)
Q Consensus       464 ~~~~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~  534 (725)
                      ..+++|+.|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  303 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  303 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence            45555555555555554321     11122355666666666666543    4555555666666666666665433322


Q ss_pred             ccC-----ccccccccccccccccc----cccccccCCCCCEEeCCCCcCcccChhhhhc-----ccccccccccccccC
Q 041178          535 LGS-----LTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-----LIHLSKLDLSYNFLG  600 (725)
Q Consensus       535 ~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~  600 (725)
                      +..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.++
T Consensus       304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            222     24667777777766654    3445556677777777777766554444433     456777777777776


Q ss_pred             c----cCcccccCCCCCCEEeCCCCccccccCcc----cc-CCCCCCEEeCcCCCcc
Q 041178          601 K----EMPFQICNMKSLEKLNLCHNNLSGFIPRC----FE-GMHNLSHIDISYNELQ  648 (725)
Q Consensus       601 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~-~l~~L~~L~ls~N~l~  648 (725)
                      +    .+|..+..+++|++|++++|++++.-...    +. ....|+.|++.++.+.
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            4    56666666777777777777766431111    11 1234666666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.5e-34  Score=315.73  Aligned_cols=384  Identities=18%  Similarity=0.125  Sum_probs=249.1

Q ss_pred             CCCCEEEccCCcCcccCCcc-ccCCCCCCceeeccccccc----cCCccccCCCCCCEEEccCCccccccCCCC-CCCC-
Q 041178          227 KSISTLDLSKNQLSGSIPFS-LGNLSNLGILYLYSNSLSG----PIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLS-  299 (725)
Q Consensus       227 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~-  299 (725)
                      ++|++|++++|+++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            57899999999987544333 7789999999999999874    346678889999999999999876433222 1233 


Q ss_pred             ---CccEEEccCCcCcc----cCcccccCCCcccccccccccccccCCccC-----cCCCCCCEEEccCCcCccCC----
Q 041178          300 ---SLTVMSLFSNSLSS----FIPPILGNLKSLSALGLHINQLNGVIPSSI-----GNLSNLRLLYLYNNGFYGFV----  363 (725)
Q Consensus       300 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~----  363 (725)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999985    457889999999999999999875443332     23567999999999887643    


Q ss_pred             cccccCCCCCCEEECcCccccccccccccC-----CCCCcEEEcCCCcCCCC----CCccccCCCCCcEEECcCcccccc
Q 041178          364 PEEIGYLKSIFELELCTNRLRGGIPHSIGN-----LTELVLVNMCENHLSGP----IPKSLRNLTSLERVRFNQNNLSGK  434 (725)
Q Consensus       364 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~  434 (725)
                      +..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            445556778888888888876544433322     44677777777766653    344455555666666666555433


Q ss_pred             cc-----ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCch
Q 041178          435 VY-----EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV  509 (725)
Q Consensus       435 ~~-----~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  509 (725)
                      ..     ..+..+++|++|++++|.+++....                    .++..+..+++|++|++++|.+.+..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            21     1122344555555555544432100                    0334444455666666666655444333


Q ss_pred             hhhc-----CCCCCeEeccCceecCC----CCccccCcccccccccccccccccccccccc-----CCCCCEEeCCCCcC
Q 041178          510 QLAK-----LFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSWIPKSIGN-----LLKLRYLNLSNNQF  575 (725)
Q Consensus       510 ~~~~-----~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l  575 (725)
                      .+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            3332     24666666666666644    3445556677777777777776544443432     56788888888887


Q ss_pred             cc----cChhhhhcccccccccccccccCccCcccc----c-CCCCCCEEeCCCCccccccCcc
Q 041178          576 IQ----KIPIEVEKLIHLSKLDLSYNFLGKEMPFQI----C-NMKSLEKLNLCHNNLSGFIPRC  630 (725)
Q Consensus       576 ~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~Ls~N~l~~~~p~~  630 (725)
                      ++    .+|..+..+++|++|++++|.+++.-...+    . ...+|+.|++.++......+..
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            75    677777778888888888887765421111    1 2346777777777766444433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.6e-29  Score=259.68  Aligned_cols=282  Identities=20%  Similarity=0.205  Sum_probs=176.3

Q ss_pred             CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCC--CC
Q 041178           71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV--IP  148 (725)
Q Consensus        71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p  148 (725)
                      |.|++|.|+..+           +. .+|.   .-.++|++|++++|.+....+..|.++++|++|++++|.++..  .|
T Consensus         7 C~~~~l~c~~~~-----------l~-~ip~---~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   71 (306)
T 2z66_A            7 CSGTEIRCNSKG-----------LT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS   71 (306)
T ss_dssp             EETTEEECCSSC-----------CS-SCCS---CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred             eCCCEEEcCCCC-----------cc-cCCC---CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence            789999996422           11 1111   1124677777777776644444466777777777777766522  24


Q ss_pred             ccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178          149 PEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNLLFDSIPLVLGNLK  227 (725)
Q Consensus       149 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  227 (725)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++
T Consensus        72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  150 (306)
T 2z66_A           72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  150 (306)
T ss_dssp             HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred             cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence            55566677777777777666 355556677777777777776665443 4566677777777777777666666667777


Q ss_pred             CCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178          228 SISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL  306 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  306 (725)
                      +|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            77777777777665 45666677777777777777777666666777777777777777776555556666777777777


Q ss_pred             cCCcCcccCcccccCCC-cccccccccccccccCCc--cCcCCCCCCEEEccCCcCccCCccccc
Q 041178          307 FSNSLSSFIPPILGNLK-SLSALGLHINQLNGVIPS--SIGNLSNLRLLYLYNNGFYGFVPEEIG  368 (725)
Q Consensus       307 ~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~  368 (725)
                      ++|.+++..|..+..++ +|+.|++++|.+.+..+.  ...-+...+.+.+..+.+....|..+.
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            77777776666666663 677777777776543210  011112233334444555555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=265.57  Aligned_cols=286  Identities=19%  Similarity=0.149  Sum_probs=205.3

Q ss_pred             CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178           68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI  147 (725)
Q Consensus        68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  147 (725)
                      ..+|.|.|+ |+         +++++++. +|. .+  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus        27 ~~~C~~~~~-c~---------~~~~~l~~-iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (353)
T 2z80_A           27 SLSCDRNGI-CK---------GSSGSLNS-IPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE   92 (353)
T ss_dssp             CCEECTTSE-EE---------CCSTTCSS-CCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCCCCCCeE-ee---------CCCCCccc-ccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence            467899987 64         23344432 331 22  358999999999998877778999999999999999999888


Q ss_pred             CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCc-CCccCccccCC
Q 041178          148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNL-LFDSIPLVLGN  225 (725)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~  225 (725)
                      |..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+..
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            8889999999999999999996555568999999999999999985443 478889999999999984 66666778888


Q ss_pred             CCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCC---CCCCcc
Q 041178          226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLG---NLSSLT  302 (725)
Q Consensus       226 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~  302 (725)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+.   ..+.++
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence            99999999999999888888888888999999988888644333345578888888888888765444332   234445


Q ss_pred             EEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcc
Q 041178          303 VMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR  382 (725)
Q Consensus       303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  382 (725)
                      .+++.++.+++                   +.+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|+
T Consensus       253 ~l~L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          253 KFTFRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EEEEESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            55555444433                   1111 234455556666666666666653222223556666666666666


Q ss_pred             ccccc
Q 041178          383 LRGGI  387 (725)
Q Consensus       383 l~~~~  387 (725)
                      +.+..
T Consensus       313 ~~~~~  317 (353)
T 2z80_A          313 WDCSC  317 (353)
T ss_dssp             BCCCH
T ss_pred             ccCcC
Confidence            65543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.2e-32  Score=306.48  Aligned_cols=427  Identities=14%  Similarity=0.060  Sum_probs=237.1

Q ss_pred             CCCcCCCCCCcEEEccCCcC---CccCccccC------------CCCCCCEEEccCCcCcccCCccccC-CC-CCCceee
Q 041178          196 PPSLGNLSNLANFYLNNNLL---FDSIPLVLG------------NLKSISTLDLSKNQLSGSIPFSLGN-LS-NLGILYL  258 (725)
Q Consensus       196 p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L  258 (725)
                      +..+..+++|++|+++++..   .+.+|..++            .+++|++|++++|.+++..+..+.. ++ +|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            34456778899999987642   133333333            5778888888888777655555554 33 3888888


Q ss_pred             cccc-ccc-cCCccccCCCCCCEEEccCCcccccc----CCCCCCCCCccEEEccCCcCcc----cCcccccCCCccccc
Q 041178          259 YSNS-LSG-PIPSVIGNLESLLQLDLSENQLSGSI----PISLGNLSSLTVMSLFSNSLSS----FIPPILGNLKSLSAL  328 (725)
Q Consensus       259 ~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L  328 (725)
                      ++|. ++. .++....++++|++|++++|.+++..    +..+..+++|++|++++|.+++    .++..+..+++|+.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            7765 211 11222336677777777777765431    1122345677777777776652    223334455666666


Q ss_pred             ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178          329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS  408 (725)
Q Consensus       329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  408 (725)
                      ++++|.+.+ +|..+..+++|++|+++.....  .+                   .+..+..+..+++|+.++++++ ..
T Consensus       226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~-------------------~~~~~~~l~~~~~L~~L~l~~~-~~  282 (592)
T 3ogk_B          226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG-------------------MPEKYMNLVFPRKLCRLGLSYM-GP  282 (592)
T ss_dssp             ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT-------------------CTTSSSCCCCCTTCCEEEETTC-CT
T ss_pred             eccCccHHH-HHHHHhhhhHHHhhcccccccc--cc-------------------hHHHHHHhhccccccccCcccc-ch
Confidence            666665553 3445555566666666542211  00                   0112223334444444444442 12


Q ss_pred             CCCCccccCCCCCcEEECcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCC-----------
Q 041178          409 GPIPKSLRNLTSLERVRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM-----------  476 (725)
Q Consensus       409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~-----------  476 (725)
                      +.+|..+..+++|+.|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+.|++++           
T Consensus       283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            2344444445555555555555443322 2234555566665552221222222234455566666652           


Q ss_pred             Cccccc-CCccccccCCCcEEEccCCcccccCchhhhc-CCCCCeEecc----CceecCC-----CCccccCcccccccc
Q 041178          477 NNISGS-IPLEIGESFKLQVLDISSNHIVGEIPVQLAK-LFSLNKLILS----LNQLSGG-----MPFELGSLTELQYLD  545 (725)
Q Consensus       477 n~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~  545 (725)
                      +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++|+
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            333332 1222344677777777777777666666655 7777777775    5566643     233355677778887


Q ss_pred             ccccc--cccccccccc-cCCCCCEEeCCCCcCcc-cChhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCC
Q 041178          546 LSANK--LRSWIPKSIG-NLLKLRYLNLSNNQFIQ-KIPIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCH  620 (725)
Q Consensus       546 Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~  620 (725)
                      +++|.  +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|++++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            76443  4444333333 36778888888887765 3444556778888888888887544 344445677888888888


Q ss_pred             CccccccCccc-cCCCCCCEEeCcCC
Q 041178          621 NNLSGFIPRCF-EGMHNLSHIDISYN  645 (725)
Q Consensus       621 N~l~~~~p~~l-~~l~~L~~L~ls~N  645 (725)
                      |+++..-...+ ..++.+....+..+
T Consensus       523 n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          523 YRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88775433333 34555555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1e-28  Score=256.99  Aligned_cols=227  Identities=23%  Similarity=0.285  Sum_probs=213.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178          129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF  208 (725)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  208 (725)
                      ..+++++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4688999999999999 78989999999999999999999 89999999999999999999999 789999999999999


Q ss_pred             EccCCcCCccCccccCC---------CCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCE
Q 041178          209 YLNNNLLFDSIPLVLGN---------LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ  279 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  279 (725)
                      ++++|.+.+.+|..+..         +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..++.+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            99999998999987765         999999999999999 889999999999999999999995 6777999999999


Q ss_pred             EEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcC
Q 041178          280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF  359 (725)
Q Consensus       280 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  359 (725)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             c
Q 041178          360 Y  360 (725)
Q Consensus       360 ~  360 (725)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.2e-29  Score=264.49  Aligned_cols=257  Identities=16%  Similarity=0.150  Sum_probs=158.6

Q ss_pred             CCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECC
Q 041178          396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVS  475 (725)
Q Consensus       396 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~  475 (725)
                      +|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44444444444444333344444445555555554444444445555555555555555544333334555555555555


Q ss_pred             CCcccccCC-ccccccCCCcEEEccCCc-ccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccc
Q 041178          476 MNNISGSIP-LEIGESFKLQVLDISSNH-IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS  553 (725)
Q Consensus       476 ~n~~~~~~p-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  553 (725)
                      +|++.+..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            555553222 245556666666666663 444455566666777777777777766666677777777777777777655


Q ss_pred             ccccccccCCCCCEEeCCCCcCcccChhhhh---cccccccccccccccCc----cCcccccCCCCCCEEeCCCCccccc
Q 041178          554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVE---KLIHLSKLDLSYNFLGK----EMPFQICNMKSLEKLNLCHNNLSGF  626 (725)
Q Consensus       554 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~  626 (725)
                      ..+..+..+++|++|++++|.+++..+..+.   ....++.++++++.+++    .+|..+..+++|++|++++|+++ .
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~  291 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S  291 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence            3333444567777777777777665444332   34556666666666654    47788899999999999999998 4


Q ss_pred             cCcc-ccCCCCCCEEeCcCCCccccCCC
Q 041178          627 IPRC-FEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       627 ~p~~-l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      +|.. |..+++|++|++++|++.+.+|.
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            5554 68999999999999999988774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.8e-31  Score=301.03  Aligned_cols=423  Identities=14%  Similarity=0.054  Sum_probs=271.6

Q ss_pred             ccccCCCCCCEEEcCCCcC---CCCCCCCcC------------CCCCCcEEEccCCcCCccCccccCC-CCC-CCEEEcc
Q 041178          173 QEIGQLSLINELALCHNNL---YGPIPPSLG------------NLSNLANFYLNNNLLFDSIPLVLGN-LKS-ISTLDLS  235 (725)
Q Consensus       173 ~~~~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~~-L~~L~Ls  235 (725)
                      ..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+.+..+..++. +++ |++|+++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            3456788899999988642   234454444            6899999999999887776666655 344 9999999


Q ss_pred             CCc-Ccc-cCCccccCCCCCCceeecccccccc----CCccccCCCCCCEEEccCCccc----cccCCCCCCCCCccEEE
Q 041178          236 KNQ-LSG-SIPFSLGNLSNLGILYLYSNSLSGP----IPSVIGNLESLLQLDLSENQLS----GSIPISLGNLSSLTVMS  305 (725)
Q Consensus       236 ~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~  305 (725)
                      +|. ++. .++.....+++|++|++++|.+++.    ++.....+++|++|++++|.++    +.++..+..+++|++|+
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            986 221 1223345789999999999998765    3334567899999999999986    33444456789999999


Q ss_pred             ccCCcCcccCcccccCCCccccccccccccc---ccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcc
Q 041178          306 LFSNSLSSFIPPILGNLKSLSALGLHINQLN---GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR  382 (725)
Q Consensus       306 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  382 (725)
                      +++|.+.+ ++..+..+++|+.|+++.....   +..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.
T Consensus       227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred             ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence            99999887 6678889999999999864332   2333456667777777776642 23344455555566666666655


Q ss_pred             cccccc-ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC---------
Q 041178          383 LRGGIP-HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ---------  452 (725)
Q Consensus       383 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~---------  452 (725)
                      +++... ..+..+++|+.|+++++ +                       ..+.++.....+++|++|++++         
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~~~-~-----------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~  360 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETRNV-I-----------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMED  360 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGG-G-----------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred             CCHHHHHHHHHhCcCCCEEeccCc-c-----------------------CHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence            443222 22344455555555422 1                       1111222223445555555552         


Q ss_pred             --CccccccC-ccccCCCCCcEEECCCCcccccCCccccc-cCCCcEEEcc----CCccccc-----CchhhhcCCCCCe
Q 041178          453 --NNFYGEIS-FNWRNFPKLGTFIVSMNNISGSIPLEIGE-SFKLQVLDIS----SNHIVGE-----IPVQLAKLFSLNK  519 (725)
Q Consensus       453 --n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~~~~L~~  519 (725)
                        +.+++... .....+++|+.|++..+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|++
T Consensus       361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~  440 (592)
T 3ogk_B          361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR  440 (592)
T ss_dssp             TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence              33332211 11234566666666666665554444444 6677777775    5556553     4445667888888


Q ss_pred             EeccCce--ecCCCCcccc-Cccccccccccccccccc-cccccccCCCCCEEeCCCCcCccc-Chhhhhcccccccccc
Q 041178          520 LILSLNQ--LSGGMPFELG-SLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLIHLSKLDL  594 (725)
Q Consensus       520 L~L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L  594 (725)
                      |++++|.  +++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|++++. ++..+..+++|++|+|
T Consensus       441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred             EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence            8886433  4444333333 377888888888888752 445567788899999999987655 4444567888999999


Q ss_pred             cccccCccCcccc-cCCCCCCEEeCCCC
Q 041178          595 SYNFLGKEMPFQI-CNMKSLEKLNLCHN  621 (725)
Q Consensus       595 s~N~l~~~~p~~~-~~l~~L~~L~Ls~N  621 (725)
                      ++|+++..-...+ ..++.++...+..+
T Consensus       521 s~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          521 QGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             ESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            9999876533223 35666666655544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.4e-27  Score=246.59  Aligned_cols=261  Identities=21%  Similarity=0.204  Sum_probs=162.8

Q ss_pred             CCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc--cccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178          348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG--GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR  425 (725)
Q Consensus       348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  425 (725)
                      +|++|++++|.++...+..+..+++|++|++++|.++.  ..+..+..+++|+.|++++|.+.. +|..+..+++|+.|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence            44444444444443333334444445555555444442  123344445555555555555542 344455566666666


Q ss_pred             CcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCcEEEccCCcc
Q 041178          426 FNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQVLDISSNHI  503 (725)
Q Consensus       426 l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~Ls~n~l  503 (725)
                      +++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            66666655444 456666677777777777666666666667777777777777665 4566677777777777777777


Q ss_pred             cccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccC-CCCCEEeCCCCcCcccCh--
Q 041178          504 VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL-LKLRYLNLSNNQFIQKIP--  580 (725)
Q Consensus       504 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p--  580 (725)
                      ++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|..+..+ ++|++|++++|++.+.-+  
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            77777777777777777777777776666667777788888888888877777777777 478888888888765422  


Q ss_pred             hhhhcccccccccccccccCccCcccccC
Q 041178          581 IEVEKLIHLSKLDLSYNFLGKEMPFQICN  609 (725)
Q Consensus       581 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  609 (725)
                      .....+...+.+.+..+.+....|..+.+
T Consensus       268 ~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          268 SFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             HHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHHHHHHhhhhhhccccccccCCchhhCC
Confidence            22233445555666666666666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.1e-27  Score=244.59  Aligned_cols=255  Identities=20%  Similarity=0.166  Sum_probs=196.6

Q ss_pred             EEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccC
Q 041178           85 ISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV  164 (725)
Q Consensus        85 ~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  164 (725)
                      +.+++++.++... |   ..-.++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~~i-p---~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-P---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSC-C---TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccC-C---cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            4556666665432 2   12357899999999999887778899999999999999999988888899999999999999


Q ss_pred             Cc-CCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccC
Q 041178          165 NQ-LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI  243 (725)
Q Consensus       165 n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  243 (725)
                      |. ++...|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            97 77666888889999999999999998877888888899999999999887776677888888899998888888666


Q ss_pred             CccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCC
Q 041178          244 PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLK  323 (725)
Q Consensus       244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  323 (725)
                      +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .-..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            666888888888888888888777888888888888888888887655556777888888888888776543211 1112


Q ss_pred             cccccccccccccccCCccCc
Q 041178          324 SLSALGLHINQLNGVIPSSIG  344 (725)
Q Consensus       324 ~L~~L~l~~n~l~~~~~~~l~  344 (725)
                      .++.+....+.+....|..+.
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGT
T ss_pred             HHHhcccccCccccCCchHhC
Confidence            344445555555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.2e-27  Score=257.85  Aligned_cols=227  Identities=24%  Similarity=0.208  Sum_probs=151.3

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      +++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57778888888777777777777888888888888777777777777777888888777777666666777777777777


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      ++|.+.+..+..+.++++|++|++++|...+.++ ..|..+++|++|++++|++++. | .+..+++|++|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            7777776555567777777777777744333333 4566777777777777776632 2 35566666666666666666


Q ss_pred             cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccc
Q 041178          266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL  335 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  335 (725)
                      ..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            5566666666666666666666655555566666666666666665554444445555555555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.7e-27  Score=257.34  Aligned_cols=231  Identities=22%  Similarity=0.187  Sum_probs=159.8

Q ss_pred             CCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEc
Q 041178          419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI  498 (725)
Q Consensus       419 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L  498 (725)
                      ++++.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34555555555555555555555566666666666655555555556666666666666665554555666666666666


Q ss_pred             cCCcccccCchhhhcCCCCCeEeccCc-eecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcc
Q 041178          499 SSNHIVGEIPVQLAKLFSLNKLILSLN-QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ  577 (725)
Q Consensus       499 s~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  577 (725)
                      ++|++.+..+..|..+++|++|++++| .+....+..|..+++|++|++++|.+++. | .+..+++|++|+|++|++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            666666555556666666777777663 33333334567777777777777777763 3 46777888888888888888


Q ss_pred             cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178          578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI  651 (725)
Q Consensus       578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  651 (725)
                      ..|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            88888888888888888888888877888888888888888888888777777888888888888888876544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=255.62  Aligned_cols=230  Identities=25%  Similarity=0.249  Sum_probs=145.7

Q ss_pred             CCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEcc
Q 041178          420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS  499 (725)
Q Consensus       420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls  499 (725)
                      +++.|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44445555555544444445555555555555555554444445555555555555555554444445555556666666


Q ss_pred             CCcccccCchhhhcCCCCCeEeccCce-ecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCccc
Q 041178          500 SNHIVGEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK  578 (725)
Q Consensus       500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  578 (725)
                      +|++.+..+..|..+++|++|++++|+ +....+..|..+++|++|++++|.++. +| .+..+++|++|+|++|++++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence            666555555555666666666666533 332333456666777777777776665 33 366777777777777777777


Q ss_pred             ChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178          579 IPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI  651 (725)
Q Consensus       579 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  651 (725)
                      .|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            7777777777777777777777777777777888888888888887777777777788888888888776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7e-27  Score=238.77  Aligned_cols=235  Identities=20%  Similarity=0.182  Sum_probs=113.4

Q ss_pred             CCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcc-ccccccccccCCCCCCEEeCc
Q 041178          373 IFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN-LSGKVYEAFGYHPNLTFLDLS  451 (725)
Q Consensus       373 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ls  451 (725)
                      +++|++++|.+++..+..+..+++|+.|++++|.+++..|..+.++++|+.|++++|. ++...+..+..+++|++|+++
T Consensus        34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence            3333333333333333333333334444444333333333333344444444444443 333333444444444444444


Q ss_pred             CCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCC
Q 041178          452 QNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM  531 (725)
Q Consensus       452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  531 (725)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence            44444444444444444444444444444433344455555555555555555444444555555666666666665555


Q ss_pred             CccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCccccc
Q 041178          532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC  608 (725)
Q Consensus       532 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  608 (725)
                      |..+..+++|++|++++|.+++..+..+..+++|++|++++|++....+.. .-...++.+..+.+.+....|..+.
T Consensus       194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            555666666666666666666554455666666666666666665432221 1123344455555555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=251.68  Aligned_cols=227  Identities=24%  Similarity=0.215  Sum_probs=153.2

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      +++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            67888888888888877788888888888888888888777778888888888888888888666667788888888888


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccC-ccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSI-PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      ++|.+....+..+..+++|++|++++|...+.+ +..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            888887666667777788888888775433333 345677777777777777766 333 35555566666666665555


Q ss_pred             cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccc
Q 041178          266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL  335 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  335 (725)
                      ..|..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            5555555555555555555555555555555555555555555555554444444444444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.7e-29  Score=258.16  Aligned_cols=249  Identities=18%  Similarity=0.146  Sum_probs=202.8

Q ss_pred             ccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccc-cccccccc-------CCCCCCEEeCcCCccccccCcc
Q 041178          391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS-GKVYEAFG-------YHPNLTFLDLSQNNFYGEISFN  462 (725)
Q Consensus       391 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~ls~n~l~~~~~~~  462 (725)
                      ++..++|+.+++++|.+  .+|..+...  |+.|++++|.++ ..++..+.       .+++|++|++++|++++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34556788888888888  567655544  788888888884 44555444       6889999999999998888877


Q ss_pred             c--cCCCCCcEEECCCCcccccCCcccccc-----CCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCC--CCc
Q 041178          463 W--RNFPKLGTFIVSMNNISGSIPLEIGES-----FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG--MPF  533 (725)
Q Consensus       463 ~--~~~~~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~  533 (725)
                      +  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            5  8889999999999999877 7777776     8999999999999988888999999999999999987764  233


Q ss_pred             cc--cCcccccccccccccccc---ccccccccCCCCCEEeCCCCcCcccCh-hhhhcccccccccccccccCccCcccc
Q 041178          534 EL--GSLTELQYLDLSANKLRS---WIPKSIGNLLKLRYLNLSNNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQI  607 (725)
Q Consensus       534 ~~--~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~  607 (725)
                      .+  ..+++|++|++++|++++   .....+..+++|++|++++|++.+.+| ..+..+++|++|+|++|.++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            44  788999999999999984   222345678999999999999988775 45667899999999999996 778777


Q ss_pred             cCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccc
Q 041178          608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG  649 (725)
Q Consensus       608 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  649 (725)
                      .  ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6  8999999999999876 65 8899999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=5.3e-29  Score=257.75  Aligned_cols=247  Identities=23%  Similarity=0.216  Sum_probs=142.9

Q ss_pred             CCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCC-CCCCCccCc-------CCCCCCEEEccCCcCCCCCCccc-
Q 041178          105 SFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL-TGVIPPEIG-------HLNQLRSLYFDVNQLHGPIPQEI-  175 (725)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~-  175 (725)
                      ..++|++|++++|.+  .+|..+...  |++|++++|.+ .+.+|..+.       ++++|++|++++|.+++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344566666666666  455544433  66666666666 334454444       56666666666666666666554 


Q ss_pred             -cCCCCCCEEEcCCCcCCCCCCCCcCCC-----CCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCccc--CCccc
Q 041178          176 -GQLSLINELALCHNNLYGPIPPSLGNL-----SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGS--IPFSL  247 (725)
Q Consensus       176 -~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~l  247 (725)
                       +.+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..|..++.+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             5666666666666666655 5555544     6666666666666665556666666666666666665543  22222


Q ss_pred             --cCCCCCCceeeccccccc--cCC-ccccCCCCCCEEEccCCccccccC-CCCCCCCCccEEEccCCcCcccCcccccC
Q 041178          248 --GNLSNLGILYLYSNSLSG--PIP-SVIGNLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSNSLSSFIPPILGN  321 (725)
Q Consensus       248 --~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  321 (725)
                        ..+++|++|++++|.+++  .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              556666666666666652  111 223455666666666666665543 33445566666666666666 3444443 


Q ss_pred             CCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc
Q 041178          322 LKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG  361 (725)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  361 (725)
                       ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             5666666666666544 43 5556666666666665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-28  Score=253.35  Aligned_cols=265  Identities=20%  Similarity=0.160  Sum_probs=198.5

Q ss_pred             EEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCc
Q 041178          375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN  454 (725)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  454 (725)
                      ..+++.+.+.......+..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+  +..+++|++|++++|+
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            34455555544444444556677777777777777666677777777777777777776554  6777788888888887


Q ss_pred             cccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCcc
Q 041178          455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE  534 (725)
Q Consensus       455 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  534 (725)
                      +++..     ..++|+.|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+..
T Consensus        92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           92 VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            76533     2377888888888877654433   567888888888888777778888888888888888888766666


Q ss_pred             c-cCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCC
Q 041178          535 L-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL  613 (725)
Q Consensus       535 ~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  613 (725)
                      + ..+++|++|++++|.+++. + ....+++|++|++++|++++..+ .+..+++|++|++++|.++ .+|..+..+++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence            5 4678888889988888875 3 33458889999999999876544 4888899999999999986 467788888999


Q ss_pred             CEEeCCCCccc-cccCccccCCCCCCEEeCcC-CCccccCCC
Q 041178          614 EKLNLCHNNLS-GFIPRCFEGMHNLSHIDISY-NELQGPIPN  653 (725)
Q Consensus       614 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~  653 (725)
                      +.|++++|++. +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999999988 77888888888888888884 456665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.1e-25  Score=227.83  Aligned_cols=218  Identities=25%  Similarity=0.249  Sum_probs=129.1

Q ss_pred             CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178           68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI  147 (725)
Q Consensus        68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  147 (725)
                      .++|.|.|+.|...+.++.+++++..+.. +|. .+  .+++++|++++|.+.+..+..|.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            58899999999765667778888877764 331 12  145677777777666555556666666666666666666444


Q ss_pred             CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178          148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK  227 (725)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  227 (725)
                      +..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            44456666666666666666654444555566666666666655555444455555555555555555444334444455


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEcc
Q 041178          228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLF  307 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  307 (725)
                      +|++|++++|.                        +++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus       158 ~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          158 SLKELRLYNNQ------------------------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             TCCEEECCSSC------------------------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccceeEecCCc------------------------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            55555555544                        444444445555556666666665554444445556666666666


Q ss_pred             CCcCcc
Q 041178          308 SNSLSS  313 (725)
Q Consensus       308 ~n~l~~  313 (725)
                      +|.+..
T Consensus       214 ~N~~~c  219 (270)
T 2o6q_A          214 ENPWDC  219 (270)
T ss_dssp             SSCBCC
T ss_pred             CCCeeC
Confidence            665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-27  Score=246.74  Aligned_cols=262  Identities=18%  Similarity=0.129  Sum_probs=149.3

Q ss_pred             ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178          329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS  408 (725)
Q Consensus       329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  408 (725)
                      +++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            344444433333333344455555555555555555555555555555555555554333  555555556665555554


Q ss_pred             CCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccc-
Q 041178          409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI-  487 (725)
Q Consensus       409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~-  487 (725)
                      +..     ..++|+.|++++|++++..+..   +++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+ 
T Consensus        94 ~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           94 ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            321     2255666666666655544332   3556666666666666555556666666666666666665544444 


Q ss_pred             cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178          488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY  567 (725)
Q Consensus       488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  567 (725)
                      ..+++|++|++++|.+++..+  ...+++|++|++++|++++. |..+..+++|++|++++|++++ +|..+..+++|+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~  241 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH  241 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred             hccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCE
Confidence            245666666666666654421  22356666666666666643 3346666677777777776665 4556666677777


Q ss_pred             EeCCCCcCc-ccChhhhhccccccccccccc-ccCccCc
Q 041178          568 LNLSNNQFI-QKIPIEVEKLIHLSKLDLSYN-FLGKEMP  604 (725)
Q Consensus       568 L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p  604 (725)
                      |++++|++. +.+|..+..++.|+.|++++| .+.+..|
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            777777766 556666666667777766633 3444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-25  Score=251.53  Aligned_cols=278  Identities=26%  Similarity=0.281  Sum_probs=153.2

Q ss_pred             CCCCccCcceeC-------CCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCC
Q 041178           68 INPCAWVGISCN-------QAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGN  140 (725)
Q Consensus        68 ~~~C~w~gv~C~-------~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~  140 (725)
                      .+||.|+|..|.       ....++.++++++++. .+|. .+.  ++|++|++++|.+. .+|.   .+++|++|+|++
T Consensus        19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~   90 (622)
T 3g06_A           19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSG   90 (622)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred             CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCC
Confidence            578999764321       1234677777777776 4442 222  67777777777765 3443   456777777777


Q ss_pred             CCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc
Q 041178          141 NQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP  220 (725)
Q Consensus       141 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  220 (725)
                      |.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|++++|.+.+ +|
T Consensus        91 N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~  157 (622)
T 3g06_A           91 NQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP  157 (622)
T ss_dssp             CCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred             CcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence            7776 3444   56777777777777664 333   45667777777776664 3432   3666677777666643 33


Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCC
Q 041178          221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS  300 (725)
Q Consensus       221 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  300 (725)
                      .   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..   +++
T Consensus       158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~  222 (622)
T 3g06_A          158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSG  222 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTT
T ss_pred             C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCC
Confidence            2   23556666666666663 33   334556666666666553 3321   245566666666555 23322   245


Q ss_pred             ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178          301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT  380 (725)
Q Consensus       301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  380 (725)
                      |++|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            5555555555554 22   22344555555555554 2332   3344555555555444 3344444444444444444


Q ss_pred             cccccccccc
Q 041178          381 NRLRGGIPHS  390 (725)
Q Consensus       381 n~l~~~~~~~  390 (725)
                      |++++..|..
T Consensus       294 N~l~~~~~~~  303 (622)
T 3g06_A          294 NPLSERTLQA  303 (622)
T ss_dssp             CCCCHHHHHH
T ss_pred             CCCCCcCHHH
Confidence            4444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7.4e-27  Score=256.26  Aligned_cols=236  Identities=21%  Similarity=0.159  Sum_probs=137.0

Q ss_pred             CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEE
Q 041178          394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFI  473 (725)
Q Consensus       394 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  473 (725)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3456666666666666555666666666666666666665544  5566666666666666654322     25566666


Q ss_pred             CCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCcccc-Cccccccccccccccc
Q 041178          474 VSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELG-SLTELQYLDLSANKLR  552 (725)
Q Consensus       474 l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~  552 (725)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            666665544332   234566666666666655555556666666666666666655555543 4566666666666665


Q ss_pred             cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc-cccCccc
Q 041178          553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS-GFIPRCF  631 (725)
Q Consensus       553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l  631 (725)
                      +. | ....+++|+.|+|++|.+++..|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            53 2 223456666666666666554333 5566666666666666643 4545566666666666666655 4455555


Q ss_pred             cCCCCCCEEeCc
Q 041178          632 EGMHNLSHIDIS  643 (725)
Q Consensus       632 ~~l~~L~~L~ls  643 (725)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4e-29  Score=283.47  Aligned_cols=409  Identities=13%  Similarity=0.099  Sum_probs=211.8

Q ss_pred             CCCCCCEEEccCCcCcccCCcccc-CCCCCCceeeccc-ccccc-CCccccCCCCCCEEEccCCccccccCCC----CCC
Q 041178          225 NLKSISTLDLSKNQLSGSIPFSLG-NLSNLGILYLYSN-SLSGP-IPSVIGNLESLLQLDLSENQLSGSIPIS----LGN  297 (725)
Q Consensus       225 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~  297 (725)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.+    ...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            445566666666555544444443 4556666666655 33221 2222335566666666666554332222    224


Q ss_pred             CCCccEEEccCCc--Cccc-CcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCC
Q 041178          298 LSSLTVMSLFSNS--LSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF  374 (725)
Q Consensus       298 l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  374 (725)
                      +++|++|++++|.  ++.. ++.....+++|+.|++++|...+.++..+..+++|+.|++..+...              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--------------  248 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE--------------  248 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC--------------
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc--------------
Confidence            5566666666664  1110 1111233456666666655222224445555566666664433210              


Q ss_pred             EEECcCccccccccccccCCCCCcEE-EcCCCcCCCCCCccccCCCCCcEEECcCccccccccc-cccCCCCCCEEeCcC
Q 041178          375 ELELCTNRLRGGIPHSIGNLTELVLV-NMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE-AFGYHPNLTFLDLSQ  452 (725)
Q Consensus       375 ~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~  452 (725)
                         +..+.+.+ ++..+.++++|+.+ .+.... .+.++..+..+++|+.|++++|.+++.... .+..+++|++|++++
T Consensus       249 ---~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          249 ---VRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             ---CCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             ---cchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence               11111221 12233334444443 111111 111222223344444444444443332211 133445555555554


Q ss_pred             Cccccc-cCccccCCCCCcEEECC---------CCcccccCCccc-cccCCCcEEEccCCcccccCchhhh-cCCCCCeE
Q 041178          453 NNFYGE-ISFNWRNFPKLGTFIVS---------MNNISGSIPLEI-GESFKLQVLDISSNHIVGEIPVQLA-KLFSLNKL  520 (725)
Q Consensus       453 n~l~~~-~~~~~~~~~~L~~L~l~---------~n~~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L  520 (725)
                      | +... ++.....+++|+.|++.         .+.+++.....+ ..+++|++|+++.|.+++.....+. .+++|+.|
T Consensus       324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            4 2211 11112234555555552         233332222222 2367777777777777665555554 47788888


Q ss_pred             ecc--C----ceecCC-----CCccccCcccccccccccccccccccccccc-CCCCCEEeCCCCcCcccChhhh-hccc
Q 041178          521 ILS--L----NQLSGG-----MPFELGSLTELQYLDLSANKLRSWIPKSIGN-LLKLRYLNLSNNQFIQKIPIEV-EKLI  587 (725)
Q Consensus       521 ~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~  587 (725)
                      +++  +    +.+++.     ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            887  3    444421     112255678888888877 565544455554 7889999999888876655555 6788


Q ss_pred             ccccccccccccCccCcc-cccCCCCCCEEeCCCCccccccCccc-cCCCCCCEEeCcCCCccccCCCC
Q 041178          588 HLSKLDLSYNFLGKEMPF-QICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYNELQGPIPNS  654 (725)
Q Consensus       588 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~~  654 (725)
                      +|++|+|++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+......|..
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~  550 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES  550 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTT
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccccc
Confidence            899999999988655443 34558899999999998864433444 45677776666666544434433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1e-28  Score=280.15  Aligned_cols=377  Identities=13%  Similarity=0.078  Sum_probs=248.3

Q ss_pred             cCCCCCCceeeccccccccCCcccc-CCCCCCEEEccCC-ccccc-cCCCCCCCCCccEEEccCCcCcccCcccccCCCc
Q 041178          248 GNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSEN-QLSGS-IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS  324 (725)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  324 (725)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+.++.    
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~----  177 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS----  177 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG----
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH----
Confidence            3455666666666665554444443 4556666666655 33221 122222445555555555554433222221    


Q ss_pred             ccccccccccccccCCccCcCCCCCCEEEccCCc--CccC-CcccccCCCCCCEEECcCccccccccccccCCCCCcEEE
Q 041178          325 LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG--FYGF-VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN  401 (725)
Q Consensus       325 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  401 (725)
                                      .....+++|++|++++|.  +... ++.....+++|+.|++++|...+.++..+..+++|+.++
T Consensus       178 ----------------~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          178 ----------------HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             ----------------GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             ----------------HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence                            122355677777777765  2111 111223467888888887733334677777788888888


Q ss_pred             cCCCc-------CCCCCCccccCCCCCcEE-ECcCccccccccccccCCCCCCEEeCcCCccccccCc-cccCCCCCcEE
Q 041178          402 MCENH-------LSGPIPKSLRNLTSLERV-RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF-NWRNFPKLGTF  472 (725)
Q Consensus       402 l~~n~-------l~~~~p~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L  472 (725)
                      +..+.       +.+ ++..+.++++|+.+ .+.+.. .+.++..+..+++|++|++++|.+++.... .+..+++|+.|
T Consensus       242 l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L  319 (594)
T 2p1m_B          242 TGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL  319 (594)
T ss_dssp             CSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred             cccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence            65543       232 34467889999999 444322 233445555789999999999997754332 35689999999


Q ss_pred             ECCCCcccc-cCCccccccCCCcEEEccC---------CcccccCchhhh-cCCCCCeEeccCceecCCCCcccc-Cccc
Q 041178          473 IVSMNNISG-SIPLEIGESFKLQVLDISS---------NHIVGEIPVQLA-KLFSLNKLILSLNQLSGGMPFELG-SLTE  540 (725)
Q Consensus       473 ~l~~n~~~~-~~p~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~-~l~~  540 (725)
                      ++++| +.. .++.....+++|++|++++         +.+++.....+. .+++|+.|++..|.+++..+..+. .+++
T Consensus       320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~  398 (594)
T 2p1m_B          320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN  398 (594)
T ss_dssp             EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred             eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence            99988 432 2333344589999999943         455544334443 589999999999998866555554 5899


Q ss_pred             ccccccc--c----ccccc-----ccccccccCCCCCEEeCCCCcCcccChhhhhc-ccccccccccccccCccCcccc-
Q 041178          541 LQYLDLS--A----NKLRS-----WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-LIHLSKLDLSYNFLGKEMPFQI-  607 (725)
Q Consensus       541 L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-  607 (725)
                      |+.|+++  +    +.++.     .++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ 
T Consensus       399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  477 (594)
T 2p1m_B          399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL  477 (594)
T ss_dssp             CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred             cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH
Confidence            9999999  4    45552     1233467889999999988 777766666665 8999999999999977665555 


Q ss_pred             cCCCCCCEEeCCCCccccccCc-cccCCCCCCEEeCcCCCcc
Q 041178          608 CNMKSLEKLNLCHNNLSGFIPR-CFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       608 ~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~  648 (725)
                      ..+++|++|+|++|.+++..+. ....+++|++|++++|+++
T Consensus       478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            6789999999999999755444 3456899999999999984

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=5e-25  Score=223.83  Aligned_cols=214  Identities=25%  Similarity=0.257  Sum_probs=171.4

Q ss_pred             CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178          443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL  522 (725)
Q Consensus       443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  522 (725)
                      ++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666655556666667777777777666666666777777888888888877777777888888888888


Q ss_pred             cCceecCCCCccccCccccccccccccccccc-cccccccCCCCCEEeCCCCcCcccChhhhhcccccc----ccccccc
Q 041178          523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS----KLDLSYN  597 (725)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N  597 (725)
                      ++|.+++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888877776788888999999999988774 588899999999999999999888888888888887    7899999


Q ss_pred             ccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178          598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF  657 (725)
Q Consensus       598 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  657 (725)
                      .+++..+..+. ..+|++|++++|++++..+..|..+++|++|++++|++.+.+|....+
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l  246 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  246 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence            99776665554 458999999999999877777899999999999999999988765444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.1e-23  Score=235.63  Aligned_cols=176  Identities=29%  Similarity=0.397  Sum_probs=111.4

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      .++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|.++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            45788888888876 5666554  78888888888887 4554   5678888888888877 3554   5677888888


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP  266 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (725)
                      ++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++ 
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            8877774 333   45677777777777654 4432   3667777777776663 332   23456666666666653 


Q ss_pred             CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++.
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~  215 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS  215 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc
Confidence            33   234556666666666553 3322   2455555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-25  Score=245.88  Aligned_cols=236  Identities=19%  Similarity=0.163  Sum_probs=137.4

Q ss_pred             CCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178          346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR  425 (725)
Q Consensus       346 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  425 (725)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++..+     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3456666666666665555556666666666666666655444  5555666666666665553221     25556666


Q ss_pred             CcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc-ccCCCcEEEccCCccc
Q 041178          426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG-ESFKLQVLDISSNHIV  504 (725)
Q Consensus       426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~Ls~n~l~  504 (725)
                      +++|.+++..+..   +++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            6666655544432   35566666666666665555556666666666666666655555554 4566666666666665


Q ss_pred             ccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-ccChhhh
Q 041178          505 GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI-QKIPIEV  583 (725)
Q Consensus       505 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~  583 (725)
                      +..+  ...+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            4422  2235666666666666664333 35566666666666666665 4555666666666666666665 4555566


Q ss_pred             hccccccccccc
Q 041178          584 EKLIHLSKLDLS  595 (725)
Q Consensus       584 ~~l~~L~~L~Ls  595 (725)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.6e-24  Score=216.71  Aligned_cols=206  Identities=24%  Similarity=0.242  Sum_probs=163.9

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999998877778899999999999999998777778899999999999999998877788889999999999


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCcc-CccccCCCCCCCEEEccCCcCcccCCccccCCCCCC----ceeeccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS-IPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG----ILYLYSN  261 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n  261 (725)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99998877776788888999999999888763 578888888888888888888877666777666666    6777777


Q ss_pred             cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      .+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            77755444333 3367777777777775555556667777777777776664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-23  Score=213.00  Aligned_cols=206  Identities=22%  Similarity=0.209  Sum_probs=155.1

Q ss_pred             CCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccC
Q 041178          445 LTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSL  524 (725)
Q Consensus       445 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~  524 (725)
                      .+.++++++.++. +|..+  .++++.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4455555555542 33322  14556666666666555555666667777777777777655555667777788888888


Q ss_pred             ceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc
Q 041178          525 NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP  604 (725)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  604 (725)
                      |++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            88776666677788888888888888888777778888888888888888887776678888899999999999887777


Q ss_pred             ccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          605 FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       605 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      ..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            7788899999999999999877777788899999999999998876653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.1e-23  Score=211.14  Aligned_cols=209  Identities=26%  Similarity=0.298  Sum_probs=120.7

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      ..+++|++|++++|.+.. + ..+..+++|++|++++|.+++.  ..+.++++|++|++++|.+++..+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            344455555555555442 1 2344555555555555555431  24555555555555555555444444555555555


Q ss_pred             EEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178          208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL  287 (725)
Q Consensus       208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  287 (725)
                      |++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555555554445555556666666666666554444455666666666666666655555556666677777777766


Q ss_pred             ccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCC
Q 041178          288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS  347 (725)
Q Consensus       288 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  347 (725)
                      ++..|..+..+++|++|++++|.+.+       .+++++.+++..|.++|.+|.+++.++
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            66555556666777777777776553       245667777777777777776666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.4e-23  Score=210.72  Aligned_cols=211  Identities=24%  Similarity=0.269  Sum_probs=171.9

Q ss_pred             cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCC
Q 041178          103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLIN  182 (725)
Q Consensus       103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  182 (725)
                      ...+++|++|++++|.+.. + +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..++++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            4567788888888887753 2 3577888888888888888753  4778888888888888888877777788888888


Q ss_pred             EEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc
Q 041178          183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS  262 (725)
Q Consensus       183 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  262 (725)
                      +|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++..+..++.+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            88888888887777778888888888888888887777777888889999999888887767677888889999999998


Q ss_pred             ccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc
Q 041178          263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS  324 (725)
Q Consensus       263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  324 (725)
                      +++..+..+..+++|++|++++|.+.+       .+++|+.+++..|.++|.+|.+++.+..
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            888777778888999999999988764       3567888888999999988888776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.8e-23  Score=209.47  Aligned_cols=181  Identities=25%  Similarity=0.190  Sum_probs=129.4

Q ss_pred             CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccc
Q 041178          467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL  546 (725)
Q Consensus       467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  546 (725)
                      +.++.|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            3444555555555444444555555555555555555543322  45667777777777776 56666777788888888


Q ss_pred             cccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccc
Q 041178          547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF  626 (725)
Q Consensus       547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  626 (725)
                      ++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            888888766677888888888888888887777777778888888888888887666666778888888888888887 6


Q ss_pred             cCccccCCCCCCEEeCcCCCccccC
Q 041178          627 IPRCFEGMHNLSHIDISYNELQGPI  651 (725)
Q Consensus       627 ~p~~l~~l~~L~~L~ls~N~l~g~i  651 (725)
                      +|..+..+.+|+++++++|++.+..
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cChhhcccccCCeEEeCCCCccCcC
Confidence            6777777788888888888886543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=8.3e-23  Score=204.12  Aligned_cols=191  Identities=23%  Similarity=0.246  Sum_probs=120.9

Q ss_pred             CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178           68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI  147 (725)
Q Consensus        68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  147 (725)
                      .+||.|.|++|..  ..+.+++++.++.. +| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus         2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   75 (251)
T 3m19_A            2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS   75 (251)
T ss_dssp             --CHHHHSSEEEG--GGTEEECTTCCCSS-CC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccCCCCCceEcCC--CCeEEecCCCCccc-cC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence            3688999999953  23467788777663 23 1222  56777777777777766667777777777777777777666


Q ss_pred             CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178          148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK  227 (725)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  227 (725)
                      |..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            66677777777777777777765556666667777777777766655555556666666666666666554444555566


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178          228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS  264 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (725)
                      +|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            6666666666555444444444455555555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.9e-22  Score=205.58  Aligned_cols=205  Identities=24%  Similarity=0.226  Sum_probs=150.4

Q ss_pred             ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178          102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI  181 (725)
Q Consensus       102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  181 (725)
                      .+..++++++++++++.++ .+|..+.  +++++|++++|.+++..|..|.++++|++|++++|.+++..+  .+.+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            4566777777777777765 3444443  577788888887777667777777888888888877774322  2677778


Q ss_pred             CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccc
Q 041178          182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN  261 (725)
Q Consensus       182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  261 (725)
                      ++|++++|.+. .+|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            88888887776 56667777778888888888777666677777888888888888877666666777778888888888


Q ss_pred             cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      ++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            877655556677888888888888887 567777777788888888877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.7e-25  Score=234.35  Aligned_cols=267  Identities=17%  Similarity=0.218  Sum_probs=183.5

Q ss_pred             CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCC--CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCC
Q 041178           68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSF--PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG  145 (725)
Q Consensus        68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  145 (725)
                      ..|..|.++.|+ ...++.++++++.+..    ..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+++
T Consensus        34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            456689999986 3457888888876652    344555  7888888888888776665 5578888888888888775


Q ss_pred             C-CCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC-cCCCC-CCCCcCCCCCCcEEEccCC-cCCcc-Cc
Q 041178          146 V-IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN-NLYGP-IPPSLGNLSNLANFYLNNN-LLFDS-IP  220 (725)
Q Consensus       146 ~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p  220 (725)
                      . +|..+..+++|++|++++|.+++..|..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            5 6777788888888888888887777777888888888888888 56542 4555667788888888888 67653 45


Q ss_pred             cccCCCC-CCCEEEccCC--cCc-ccCCccccCCCCCCceeecccc-ccccCCccccCCCCCCEEEccCCc-cccccCCC
Q 041178          221 LVLGNLK-SISTLDLSKN--QLS-GSIPFSLGNLSNLGILYLYSNS-LSGPIPSVIGNLESLLQLDLSENQ-LSGSIPIS  294 (725)
Q Consensus       221 ~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~  294 (725)
                      ..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            6667777 8888888877  444 3455566677777777777777 565666667777777777777774 22221124


Q ss_pred             CCCCCCccEEEccCCcCcccCcccccCC-CcccccccccccccccCCccCc
Q 041178          295 LGNLSSLTVMSLFSNSLSSFIPPILGNL-KSLSALGLHINQLNGVIPSSIG  344 (725)
Q Consensus       295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~  344 (725)
                      +..+++|++|++++| ++.   ..+..+ .++..|+++.|++++..|..++
T Consensus       268 l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            556777777777776 322   122222 2355555666666666555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.5e-24  Score=229.31  Aligned_cols=223  Identities=21%  Similarity=0.160  Sum_probs=115.7

Q ss_pred             EECcCccccccccccccCCCCCcEEEcCCCcCCCCCC----ccccCCC-CCcEEECcCccccccccccccCC-----CCC
Q 041178          376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP----KSLRNLT-SLERVRFNQNNLSGKVYEAFGYH-----PNL  445 (725)
Q Consensus       376 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L  445 (725)
                      ++++.|.++|.+|..+...++|+.|++++|.+++..+    ..+..++ +|+.|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4666777777776666666667777777777766555    5555666 67777777776666555544443     666


Q ss_pred             CEEeCcCCccccccCcc----ccCC-CCCcEEECCCCcccccCCccccc-----cCCCcEEEccCCcccccCch----hh
Q 041178          446 TFLDLSQNNFYGEISFN----WRNF-PKLGTFIVSMNNISGSIPLEIGE-----SFKLQVLDISSNHIVGEIPV----QL  511 (725)
Q Consensus       446 ~~L~ls~n~l~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~~~~----~~  511 (725)
                      ++|++++|++++..+..    +..+ ++|++|++++|.+++..+..+..     ..+|++|++++|.+.+....    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            66666666665544432    2222 55666666666555443333221     23555555555555533222    22


Q ss_pred             hcCC-CCCeEeccCceecCCCCcccc----Cc-cccccccccccccccc----ccccccc-CCCCCEEeCCCCcCcccCh
Q 041178          512 AKLF-SLNKLILSLNQLSGGMPFELG----SL-TELQYLDLSANKLRSW----IPKSIGN-LLKLRYLNLSNNQFIQKIP  580 (725)
Q Consensus       512 ~~~~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~p  580 (725)
                      ..++ +|++|+|++|++++..+..+.    .+ ++|++|+|++|.+.+.    ++..+.. .++|++|+|++|++.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3333 555555555555544433222    22 3555555555555442    2223333 2355555555555544333


Q ss_pred             hh----hhcccccccccccccc
Q 041178          581 IE----VEKLIHLSKLDLSYNF  598 (725)
Q Consensus       581 ~~----~~~l~~L~~L~Ls~N~  598 (725)
                      ..    +..+++|++|+|++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence            22    2333445555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.2e-24  Score=230.35  Aligned_cols=245  Identities=18%  Similarity=0.220  Sum_probs=124.8

Q ss_pred             ccccccCCCCCcEEEcCCCcCCCCCC----ccccCCCCCcEEECcCcc---ccccccccc-------cCCCCCCEEeCcC
Q 041178          387 IPHSIGNLTELVLVNMCENHLSGPIP----KSLRNLTSLERVRFNQNN---LSGKVYEAF-------GYHPNLTFLDLSQ  452 (725)
Q Consensus       387 ~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~ls~  452 (725)
                      ++..+..+++|+.|++++|.++...+    ..+..+++|+.|++++|.   +++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            44445556666666666666654422    234455566666665542   333333322       3445555555555


Q ss_pred             CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhh----cC---------CCCCe
Q 041178          453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA----KL---------FSLNK  519 (725)
Q Consensus       453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~~---------~~L~~  519 (725)
                      |.+.+....                    .+|..+..+++|++|++++|.+.+..+..+.    .+         ++|++
T Consensus       104 n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A          104 NAFGPTAQE--------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             CCCCTTTHH--------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             CcCCHHHHH--------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence            555441000                    2333444445555555555554332222222    22         45555


Q ss_pred             EeccCceec-CCCC---ccccCcccccccccccccccc-----ccccccccCCCCCEEeCCCCcCc----ccChhhhhcc
Q 041178          520 LILSLNQLS-GGMP---FELGSLTELQYLDLSANKLRS-----WIPKSIGNLLKLRYLNLSNNQFI----QKIPIEVEKL  586 (725)
Q Consensus       520 L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l  586 (725)
                      |++++|+++ +.++   ..+..+++|++|++++|.+..     ..+..+..+++|++|+|++|.++    +.+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            555555554 2222   234445555555555555541     22334555566666666666654    4455555666


Q ss_pred             cccccccccccccCcc----Cccccc--CCCCCCEEeCCCCcccc----ccCccc-cCCCCCCEEeCcCCCccccC
Q 041178          587 IHLSKLDLSYNFLGKE----MPFQIC--NMKSLEKLNLCHNNLSG----FIPRCF-EGMHNLSHIDISYNELQGPI  651 (725)
Q Consensus       587 ~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~i  651 (725)
                      ++|++|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            6666666666666544    344442  25666666666666665    355555 44566666666666665444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=209.57  Aligned_cols=203  Identities=20%  Similarity=0.158  Sum_probs=116.8

Q ss_pred             CCCcEEECCCCCCCcc-Cch--hccCCCCCCEEECCCCCCCCCCCccC--cCCCCCCEEEccCCcCCCCCC----ccccC
Q 041178          107 PHLVHLNLSFNIVFGT-IPP--QVGNLSKLQHLDLGNNQLTGVIPPEI--GHLNQLRSLYFDVNQLHGPIP----QEIGQ  177 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~-~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~  177 (725)
                      ..++.+++.++.+... +..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3466777776665432 111  12234567777777777777777766  777777777777777776544    23345


Q ss_pred             CCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCcc--C--ccccCCCCCCCEEEccCCcCcccCCc----cccC
Q 041178          178 LSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS--I--PLVLGNLKSISTLDLSKNQLSGSIPF----SLGN  249 (725)
Q Consensus       178 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~  249 (725)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.  +  +..++.+++|++|++++|+++. ++.    .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            66777777777777666666666677777777777765432  1  1223456666666666666642 111    1345


Q ss_pred             CCCCCceeeccccccccCCccccCC---CCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          250 LSNLGILYLYSNSLSGPIPSVIGNL---ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       250 l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            5566666666666655555444444   35555555555555 3444332  445555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.2e-23  Score=215.32  Aligned_cols=202  Identities=19%  Similarity=0.146  Sum_probs=157.4

Q ss_pred             CCCCCEEeCcCCccccccCccc--cCCCCCcEEECCCCcccccCC----ccccccCCCcEEEccCCcccccCchhhhcCC
Q 041178          442 HPNLTFLDLSQNNFYGEISFNW--RNFPKLGTFIVSMNNISGSIP----LEIGESFKLQVLDISSNHIVGEIPVQLAKLF  515 (725)
Q Consensus       442 ~~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  515 (725)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|++.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            3457777777777777766666  667777777777777776544    3345677888888888888888888888888


Q ss_pred             CCCeEeccCceecCC----CCccccCcccccccccccccccccccc----ccccCCCCCEEeCCCCcCcccChhhhhcc-
Q 041178          516 SLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSWIPK----SIGNLLKLRYLNLSNNQFIQKIPIEVEKL-  586 (725)
Q Consensus       516 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-  586 (725)
                      +|++|++++|++.+.    .+..+..+++|++|++++|+++. ++.    .+..+++|++|+|++|++.+.+|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            888888888887642    12334678899999999999874 232    35788999999999999998888877777 


Q ss_pred             --cccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccc
Q 041178          587 --IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG  649 (725)
Q Consensus       587 --~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  649 (725)
                        ++|++|+|++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence              69999999999997 6777664  7999999999999964 43 6788999999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=7.1e-24  Score=224.13  Aligned_cols=222  Identities=19%  Similarity=0.161  Sum_probs=92.9

Q ss_pred             EccCCcCccCCcccccCCCCCCEEECcCcccccccc----ccccCCC-CCcEEEcCCCcCCCCCCccccCC-----CCCc
Q 041178          353 YLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP----HSIGNLT-ELVLVNMCENHLSGPIPKSLRNL-----TSLE  422 (725)
Q Consensus       353 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~L~  422 (725)
                      +++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|+.|++++|.+++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            444444444444444444445555555554443333    3334444 45555555554444433333332     4455


Q ss_pred             EEECcCccccccccccc----cCC-CCCCEEeCcCCccccccCccc----cC-CCCCcEEECCCCcccccCC----cccc
Q 041178          423 RVRFNQNNLSGKVYEAF----GYH-PNLTFLDLSQNNFYGEISFNW----RN-FPKLGTFIVSMNNISGSIP----LEIG  488 (725)
Q Consensus       423 ~L~l~~n~l~~~~~~~~----~~~-~~L~~L~ls~n~l~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~p----~~~~  488 (725)
                      .|++++|.+++..+..+    ..+ ++|++|++++|++++..+..+    .. .++|++|++++|.+++..+    ..+.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            55555554444333322    222 445555555554443332221    11 2345555555554443221    1222


Q ss_pred             ccC-CCcEEEccCCcccccCchhhh----cC-CCCCeEeccCceecCC----CCccccC-ccccccccccccccccccc-
Q 041178          489 ESF-KLQVLDISSNHIVGEIPVQLA----KL-FSLNKLILSLNQLSGG----MPFELGS-LTELQYLDLSANKLRSWIP-  556 (725)
Q Consensus       489 ~l~-~L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~-  556 (725)
                      ..+ +|++|++++|++++..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|.+.+..+ 
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  243 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE  243 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence            222 455555555544444433222    22 3455555555544432    1222222 2345555555554443222 


Q ss_pred             ---cccccCCCCCEEeCCCCc
Q 041178          557 ---KSIGNLLKLRYLNLSNNQ  574 (725)
Q Consensus       557 ---~~~~~l~~L~~L~Ls~n~  574 (725)
                         ..+..+++|++|++++|.
T Consensus       244 ~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          244 NLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHhcCCCccEEEeccCC
Confidence               122334445555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4.4e-24  Score=228.01  Aligned_cols=246  Identities=21%  Similarity=0.206  Sum_probs=178.8

Q ss_pred             CcccccCCCCCCEEECcCcccccccc----ccccCCCCCcEEEcCCC---cCCCCCCccc-------cCCCCCcEEECcC
Q 041178          363 VPEEIGYLKSIFELELCTNRLRGGIP----HSIGNLTELVLVNMCEN---HLSGPIPKSL-------RNLTSLERVRFNQ  428 (725)
Q Consensus       363 ~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~l~~  428 (725)
                      ++..+..+++|+.|++++|.+.+..+    ..+..+++|+.|++++|   .+++.+|..+       ..+++|+.|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            55667788999999999999987644    45778999999999996   4556667655       6889999999999


Q ss_pred             ccccc----cccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccccc---------CCCcE
Q 041178          429 NNLSG----KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES---------FKLQV  495 (725)
Q Consensus       429 n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l---------~~L~~  495 (725)
                      |.+++    .++..+..+++|++|++++|.+++..+..+..                    .+..+         ++|++
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence            99987    46677788899999999999886543332221                    11112         55666


Q ss_pred             EEccCCccc-ccCc---hhhhcCCCCCeEeccCceecC-----CCCccccCccccccccccccccc----cccccccccC
Q 041178          496 LDISSNHIV-GEIP---VQLAKLFSLNKLILSLNQLSG-----GMPFELGSLTELQYLDLSANKLR----SWIPKSIGNL  562 (725)
Q Consensus       496 L~Ls~n~l~-~~~~---~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l  562 (725)
                      |++++|++. +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|+|++|.++    +.+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            666666665 3333   355566777777777777662     23335667778888888888775    4567777788


Q ss_pred             CCCCEEeCCCCcCccc----Chhhhhc--ccccccccccccccCc----cCcccc-cCCCCCCEEeCCCCccccccC
Q 041178          563 LKLRYLNLSNNQFIQK----IPIEVEK--LIHLSKLDLSYNFLGK----EMPFQI-CNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       563 ~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      ++|++|+|++|.+++.    +|..+..  +++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8888888888888765    5555633  7888888888888877    477666 567888888888888886654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=4.5e-22  Score=197.31  Aligned_cols=197  Identities=18%  Similarity=0.192  Sum_probs=148.1

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCC-CCCCCCccCcCCCCCCEEEccC-CcCCCCCCccccCCCCCCEE
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ-LTGVIPPEIGHLNQLRSLYFDV-NQLHGPIPQEIGQLSLINEL  184 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L  184 (725)
                      ++|++|++++|.+.+..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378999999999887777788889999999999996 7766666888899999999988 88887666778888889999


Q ss_pred             EcCCCcCCCCCCCCcCCCCCCc---EEEccCC-cCCccCccccCCCCCCC-EEEccCCcCcccCCccccCCCCCCceeec
Q 041178          185 ALCHNNLYGPIPPSLGNLSNLA---NFYLNNN-LLFDSIPLVLGNLKSIS-TLDLSKNQLSGSIPFSLGNLSNLGILYLY  259 (725)
Q Consensus       185 ~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  259 (725)
                      ++++|.+++ +|+ +..+++|+   +|++++| .+.+..+..|..+++|+ +|++++|+++ .+|......++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            988888885 555 77777777   8888888 77766666778888888 8888888877 444433333677777777


Q ss_pred             ccc-ccccCCccccCC-CCCCEEEccCCccccccCCCCCCCCCccEEEccCC
Q 041178          260 SNS-LSGPIPSVIGNL-ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN  309 (725)
Q Consensus       260 ~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  309 (725)
                      +|. +++..+..|..+ ++|++|++++|++++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            774 765555666677 777777777777763 3332  4566666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=5.8e-22  Score=197.99  Aligned_cols=181  Identities=24%  Similarity=0.205  Sum_probs=148.3

Q ss_pred             CcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccc
Q 041178          469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA  548 (725)
Q Consensus       469 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (725)
                      .+.++++++.++ .+|..+.  +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            445555555554 3444433  4678888888888877777788888888888888888887777788888888899988


Q ss_pred             cccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178          549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP  628 (725)
Q Consensus       549 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  628 (725)
                      |++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            88888777788888999999999999887777778889999999999999987777788999999999999999998888


Q ss_pred             ccccCCCCCCEEeCcCCCccccCC
Q 041178          629 RCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       629 ~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      ..|..+++|++|++++|++.+...
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTTST
T ss_pred             HHHhCCCCCCEEEeeCCceeCCcc
Confidence            889999999999999999987643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4.1e-23  Score=216.22  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CCEEEccCCcCccCCcccccCC--CCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCC-CCccccCCCCCcEEE
Q 041178          349 LRLLYLYNNGFYGFVPEEIGYL--KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP-IPKSLRNLTSLERVR  425 (725)
Q Consensus       349 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~  425 (725)
                      ++.++++++.+.   +..+..+  +.++.+++++|.+.+..+. +..+++|+.|++++|.+++. ++..+..+++|+.|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            566666666554   3333434  5666666666666554443 33455666666666555543 444555555555555


Q ss_pred             CcCccccccccccccCCCCCCEEeCcCC-ccccc-cCccccCCCCCcEEECCCC-ccccc-CCccccccC-CCcEEEccC
Q 041178          426 FNQNNLSGKVYEAFGYHPNLTFLDLSQN-NFYGE-ISFNWRNFPKLGTFIVSMN-NISGS-IPLEIGESF-KLQVLDISS  500 (725)
Q Consensus       426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~p~~~~~l~-~L~~L~Ls~  500 (725)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            5555555555555555555555555555 34431 3333444445555555544 44432 233344444 455555544


Q ss_pred             C--ccc-ccCchhhhcCCCCCeEeccCce-ecCCCCccccCcccccccccccc
Q 041178          501 N--HIV-GEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDLSAN  549 (725)
Q Consensus       501 n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  549 (725)
                      |  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4  222 2333344444444444444444 33333334444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.1e-22  Score=197.62  Aligned_cols=197  Identities=17%  Similarity=0.153  Sum_probs=146.4

Q ss_pred             CCCEEeCcCCccccccCccccCCCCCcEEECCCCc-ccccCCccccccCCCcEEEccC-CcccccCchhhhcCCCCCeEe
Q 041178          444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN-ISGSIPLEIGESFKLQVLDISS-NHIVGEIPVQLAKLFSLNKLI  521 (725)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~  521 (725)
                      ++++|++++|++++..+..|.++++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555556666666666666665 5555555667777777777777 777766666777788888888


Q ss_pred             ccCceecCCCCccccCccccc---ccccccc-ccccccccccccCCCCC-EEeCCCCcCcccChhhhhcccccccccccc
Q 041178          522 LSLNQLSGGMPFELGSLTELQ---YLDLSAN-KLRSWIPKSIGNLLKLR-YLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       522 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      +++|++++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|+++...+..+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            88888875 554 77777777   8999998 88887777788899999 9999999987444444444 8899999999


Q ss_pred             cc-cCccCcccccCC-CCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178          597 NF-LGKEMPFQICNM-KSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       597 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  646 (725)
                      |+ +++..+..|..+ ++|+.|++++|++++. |..  .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            95 877777788888 9999999999999854 433  56788889888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.4e-21  Score=187.64  Aligned_cols=185  Identities=22%  Similarity=0.240  Sum_probs=150.0

Q ss_pred             CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178           70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP  149 (725)
Q Consensus        70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  149 (725)
                      .|.|.+|.|+..+           +. .++   ..-.++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.
T Consensus         6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            4789999997432           11 112   22346899999999999877777789999999999999999977666


Q ss_pred             cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCC
Q 041178          150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSI  229 (725)
Q Consensus       150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  229 (725)
                      .|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            78899999999999999997766778899999999999999987777778889999999999999887766778888999


Q ss_pred             CEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCC
Q 041178          230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLES  276 (725)
Q Consensus       230 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  276 (725)
                      ++|++++|.+.+       .+++|++|+++.|.++|.+|..++.++.
T Consensus       151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            999999887663       4567888888888888888887776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.2e-21  Score=198.54  Aligned_cols=193  Identities=26%  Similarity=0.371  Sum_probs=99.5

Q ss_pred             cCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178          416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV  495 (725)
Q Consensus       416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  495 (725)
                      ..+++|+.|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+.  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3456667777777766543 2 45566666666666666654433  55566666666666655532  23455555555


Q ss_pred             EEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178          496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF  575 (725)
Q Consensus       496 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  575 (725)
                      |++++|++.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++
T Consensus       112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            5555555544221  4555555555555555543222  4445555555555555544222  44555555555555554


Q ss_pred             cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178          576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      ++..+  +..+++|++|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            43222  4444455555555555443322  444445555555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=4.1e-21  Score=197.77  Aligned_cols=194  Identities=29%  Similarity=0.400  Sum_probs=109.9

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.  ..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            345667777777666643 33 466667777777777766643 22 66666777777777666642  24666666666


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      |++++|.+++. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|++|++++|.+
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence            66666666542 2 25566666666666666544322  55556666666666655532 22 55555555555555555


Q ss_pred             cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      ++..+  +..+++|++|++++|++++..+  +..+++|++|++++|.+++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            53322  4555555555555555553322  4455555555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1.2e-19  Score=190.57  Aligned_cols=239  Identities=18%  Similarity=0.145  Sum_probs=102.9

Q ss_pred             EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCE-EEcCC
Q 041178          111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIP-QEIGQLSLINE-LALCH  188 (725)
Q Consensus       111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~  188 (725)
                      +++.++++++ .+|..+  .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+++
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4445555443 334333  2345555555555553333345555555555555555443333 23444444433 33334


Q ss_pred             CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCC
Q 041178          189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP  268 (725)
Q Consensus       189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  268 (725)
                      |++....|..|..+++|++|++++|.+....+..+....++..+++.++                       +.+....+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l~~  146 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTIER  146 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEECT
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccccc
Confidence            4444444444444444444444444444333333333334444444321                       23332222


Q ss_pred             ccccCCC-CCCEEEccCCccccccCCCCCCCCCccEEEccC-CcCcccCcccccCCCcccccccccccccccCCccCcCC
Q 041178          269 SVIGNLE-SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS-NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL  346 (725)
Q Consensus       269 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  346 (725)
                      ..|..+. .++.|++++|+++. +|.......+|+++++.+ |.++.+.+..|..+++|++|++++|+++. +|.  ..+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~  222 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGL  222 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSC
T ss_pred             cchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhh
Confidence            3333332 34555555555542 333333344555555543 33333333344555555555555555542 222  112


Q ss_pred             CCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178          347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT  380 (725)
Q Consensus       347 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  380 (725)
                      .+|+.|.+.++.-...+|. +..+++|+.+++.+
T Consensus       223 ~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          223 ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            3344444333332223332 34445555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=3.8e-20  Score=204.42  Aligned_cols=204  Identities=26%  Similarity=0.353  Sum_probs=127.0

Q ss_pred             ccCcc-eeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCcc
Q 041178           72 AWVGI-SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE  150 (725)
Q Consensus        72 ~w~gv-~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  150 (725)
                      .|.|+ .|. .++++.++++++.+.+ +|. .+  +++|++|+|++|.+. .+|   ..+++|++|++++|.+++ +|. 
T Consensus        49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           49 AVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             HHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             hhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence            69999 675 3468888888887776 442 23  367777777777776 455   446777777777777775 555 


Q ss_pred             CcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC
Q 041178          151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS  230 (725)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  230 (725)
                      +.+  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+
T Consensus       118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~  183 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE  183 (571)
T ss_dssp             CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred             hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence            544  67777777777765 444   45667777777666664 443   35566666666666654 444 43  5666


Q ss_pred             EEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCc
Q 041178          231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS  310 (725)
Q Consensus       231 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  310 (725)
                      +|++++|.++ .+|. +..  +|                 ....+.|+.|++++|.++ .+|..+..+++|+.|++++|.
T Consensus       184 ~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          184 ALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             EEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred             EEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence            6666666655 3333 221  22                 011122377777777776 466666667777888888887


Q ss_pred             CcccCcccccCC
Q 041178          311 LSSFIPPILGNL  322 (725)
Q Consensus       311 l~~~~~~~l~~l  322 (725)
                      +++.+|..+..+
T Consensus       242 l~~~~p~~l~~l  253 (571)
T 3cvr_A          242 LSSRIRESLSQQ  253 (571)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            777777665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.4e-19  Score=175.20  Aligned_cols=84  Identities=26%  Similarity=0.310  Sum_probs=34.3

Q ss_pred             CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc
Q 041178          132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN  211 (725)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  211 (725)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444443333334444444444444444443333333344444444444444433322223333333333333


Q ss_pred             CCcC
Q 041178          212 NNLL  215 (725)
Q Consensus       212 ~n~l  215 (725)
                      +|.+
T Consensus       109 ~N~l  112 (208)
T 2o6s_A          109 TNQL  112 (208)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            3333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=8.3e-20  Score=191.81  Aligned_cols=203  Identities=16%  Similarity=0.131  Sum_probs=149.8

Q ss_pred             CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCC-c
Q 041178           71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIP-P  149 (725)
Q Consensus        71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~  149 (725)
                      |+|+.|.|+.           .+++ .+| ..+  .+++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| .
T Consensus         9 C~~~~v~C~~-----------~~Lt-~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            9 CSNRVFLCQE-----------SKVT-EIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             EETTEEEEES-----------TTCC-SCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             eeCCEEEecC-----------CCCC-ccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            6788888853           2232 233 122  3689999999999987666789999999999999999877666 4


Q ss_pred             cCcCCCCCCE-EEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCC-cCCccCccccCCCC
Q 041178          150 EIGHLNQLRS-LYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN-LLFDSIPLVLGNLK  227 (725)
Q Consensus       150 ~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~  227 (725)
                      .|.+++++++ +.+..|+++...|..|.++++|++|++++|.+.+..+..+....++..|++.++ .+....+..|..+.
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            6889999876 666779999888899999999999999999999877777778888999999764 55554445666654


Q ss_pred             -CCCEEEccCCcCcccCCccccCCCCCCceeecc-ccccccCCccccCCCCCCEEEccCCcccc
Q 041178          228 -SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS-NSLSGPIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       228 -~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                       .++.|++++|+++. ++.......+|+++++.+ |.++...+..|.++++|++|++++|+++.
T Consensus       154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence             57888888888874 444444556677777765 34443223445666677777777776663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.5e-19  Score=199.73  Aligned_cols=188  Identities=24%  Similarity=0.308  Sum_probs=113.7

Q ss_pred             CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178          108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC  187 (725)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (725)
                      +|++|++++|.+.+ +|..+  +++|++|+|++|.++ .+|   ..+++|++|++++|.+++ +|. +.+          
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~----------  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA----------  120 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence            55555555555544 44433  245555555555555 344   234555555555555543 333 332          


Q ss_pred             CCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC
Q 041178          188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI  267 (725)
Q Consensus       188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  267 (725)
                                      +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +
T Consensus       121 ----------------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          121 ----------------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             ----------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             ----------------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence                            45555555554443 333   34555555555555553 333   34566666666666654 4


Q ss_pred             CccccCCCCCCEEEccCCccccccCCCCCCCCCc-------cEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178          268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL-------TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP  340 (725)
Q Consensus       268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  340 (725)
                      |. +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|.+++.+|
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            44 44  67777777777776 4555 443  66       999999999996 67778889999999999999999888


Q ss_pred             ccCcCCC
Q 041178          341 SSIGNLS  347 (725)
Q Consensus       341 ~~l~~l~  347 (725)
                      ..+..++
T Consensus       248 ~~l~~l~  254 (571)
T 3cvr_A          248 ESLSQQT  254 (571)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8776643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2e-19  Score=175.24  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=131.9

Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178          494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN  572 (725)
Q Consensus       494 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  572 (725)
                      +.+++++|.++. +|..+  ...+++|++++|++++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            356666666653 34333  2346778888888876644 4578888999999999999887777899999999999999


Q ss_pred             CcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      |++++..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+.++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99998888889999999999999999998889999999999999999999999889999999999999999999998776


Q ss_pred             C
Q 041178          653 N  653 (725)
Q Consensus       653 ~  653 (725)
                      .
T Consensus       171 l  171 (220)
T 2v70_A          171 L  171 (220)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=9.1e-19  Score=171.85  Aligned_cols=159  Identities=23%  Similarity=0.264  Sum_probs=129.7

Q ss_pred             CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178           68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI  147 (725)
Q Consensus        68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  147 (725)
                      ...|+|++|.|+..+           + +.+|.   .-.++|++|++++|.+.+..|..|..+++|++|+|++|.++...
T Consensus        16 ~~~Cs~~~v~c~~~~-----------l-~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~   80 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKR-----------H-ASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP   80 (229)
T ss_dssp             TCEEETTEEECTTSC-----------C-SSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCEEeCCEeEccCCC-----------c-CccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence            578999999996322           1 12221   12378999999999999888888999999999999999998666


Q ss_pred             CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178          148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK  227 (725)
Q Consensus       148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  227 (725)
                      +..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            667888999999999999998777777888999999999999888 6788888888999999999888776667788888


Q ss_pred             CCCEEEccCCcCccc
Q 041178          228 SISTLDLSKNQLSGS  242 (725)
Q Consensus       228 ~L~~L~Ls~n~l~~~  242 (725)
                      +|++|++++|.+...
T Consensus       160 ~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          160 SLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TCCEEECTTSCBCTT
T ss_pred             CCCEEEeeCCCccCC
Confidence            888888888887743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=3.7e-19  Score=173.41  Aligned_cols=156  Identities=20%  Similarity=0.246  Sum_probs=126.2

Q ss_pred             cEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCC
Q 041178          494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN  573 (725)
Q Consensus       494 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  573 (725)
                      +.++++++.++. +|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            355666666552 333332  46788888888888766777888888888888888888877888888889999999999


Q ss_pred             cCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          574 QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       574 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      ++++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            8887666677888999999999999988888889999999999999999998888888999999999999999876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=2.1e-20  Score=214.37  Aligned_cols=256  Identities=25%  Similarity=0.260  Sum_probs=137.8

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccC
Q 041178           25 STKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFS  104 (725)
Q Consensus        25 ~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~  104 (725)
                      ...++++|+++...........-..|.   .          +.+..+.|.++.+.. ++++++++.++.+.....  .  
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~--~--  191 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPT---G----------DSTPSGTATNSAVST-PLTPKIELFANGKDEANQ--A--  191 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCc---C----------CCCccccCCCceecC-CccceEEeeCCCCCcchh--h--
Confidence            456788999998776443222233453   1          124567899988864 789999998887765321  2  


Q ss_pred             CCCCCcEEECCCCCCCc---------cCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccc
Q 041178          105 SFPHLVHLNLSFNIVFG---------TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI  175 (725)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  175 (725)
                         .++.++|+.+.+.+         ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|
T Consensus       192 ---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  266 (727)
T 4b8c_D          192 ---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI  266 (727)
T ss_dssp             ---------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG
T ss_pred             ---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh
Confidence               23334444443332         34677899999999999999998 78888889999999999999999 889999


Q ss_pred             cCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCC-CC
Q 041178          176 GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN-LG  254 (725)
Q Consensus       176 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~  254 (725)
                      +++++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.+++.+|..+..+.. +.
T Consensus       267 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~  344 (727)
T 4b8c_D          267 KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL  344 (727)
T ss_dssp             GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhh
Confidence            99999999999999999 77999999999999999999985 77888999999999999999999988888765432 23


Q ss_pred             ceeeccccccccCCccccCCCCCCEEEccCC--------ccccccCCCCCCCCCccEEEccCCcC
Q 041178          255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSEN--------QLSGSIPISLGNLSSLTVMSLFSNSL  311 (725)
Q Consensus       255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~l  311 (725)
                      .+++++|.+++.+|..      |+.|+++.|        .+.+..+..+..+..++...+++|-+
T Consensus       345 ~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          345 IFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             HHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred             HHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            4789999999888764      455666665        22222333333444444455555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1.3e-18  Score=170.77  Aligned_cols=157  Identities=25%  Similarity=0.287  Sum_probs=124.5

Q ss_pred             CcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178          493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN  572 (725)
Q Consensus       493 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  572 (725)
                      -+.++.+++++. .+|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++....+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345666666554 3333222  6678888888888877777788888888888888888776666678888888888888


Q ss_pred             CcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      |++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|++.+.++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8888777777888888889999999886 678888889999999999999987777788889999999999999987766


Q ss_pred             C
Q 041178          653 N  653 (725)
Q Consensus       653 ~  653 (725)
                      .
T Consensus       177 ~  177 (229)
T 3e6j_A          177 D  177 (229)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=4.7e-19  Score=186.83  Aligned_cols=158  Identities=25%  Similarity=0.233  Sum_probs=97.5

Q ss_pred             CCcEEEccCCcccccCchhhh-cCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeC
Q 041178          492 KLQVLDISSNHIVGEIPVQLA-KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL  570 (725)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  570 (725)
                      .++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            355566666666555555554 5666666666666666555555666666666666666666655555666666666666


Q ss_pred             CCCcCcccChhhhhcccccccccccccccCccCcccc---cCCCCCCEEeCCCCccccccCccccCCCC--CCEEeCcCC
Q 041178          571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQI---CNMKSLEKLNLCHNNLSGFIPRCFEGMHN--LSHIDISYN  645 (725)
Q Consensus       571 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N  645 (725)
                      ++|++.+..|..|..+++|+.|+|++|.+++..+..|   ..+++|+.|||++|++++..+..|..++.  ++.|++++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            6666666666666666666666666666655433333   45667777777777776555555666655  366777777


Q ss_pred             Cccc
Q 041178          646 ELQG  649 (725)
Q Consensus       646 ~l~g  649 (725)
                      ++.+
T Consensus       200 ~~~C  203 (361)
T 2xot_A          200 PLEC  203 (361)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            7654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.2e-18  Score=175.66  Aligned_cols=149  Identities=25%  Similarity=0.365  Sum_probs=76.8

Q ss_pred             cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178          488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY  567 (725)
Q Consensus       488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  567 (725)
                      ..+++|++|++++|++++..+  +..+++|++|++++|++++ ++ .+..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~  138 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES  138 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred             hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence            334444444444444443332  4444555555555555443 11 244555555555555555542  23555555555


Q ss_pred             EeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCc
Q 041178          568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL  647 (725)
Q Consensus       568 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  647 (725)
                      |++++|++++.  ..+..+++|++|++++|.+++..|  +..+++|+.|++++|++++. | .+..+++|+.|++++|++
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence            55555555443  345555555566666665544433  55556666666666655532 2 255556666666666655


Q ss_pred             c
Q 041178          648 Q  648 (725)
Q Consensus       648 ~  648 (725)
                      .
T Consensus       213 ~  213 (291)
T 1h6t_A          213 L  213 (291)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.1e-18  Score=175.86  Aligned_cols=170  Identities=28%  Similarity=0.397  Sum_probs=73.9

Q ss_pred             CCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEE
Q 041178          130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFY  209 (725)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  209 (725)
                      +++|++|++++|.+... + .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+ + +.+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence            34444444444444322 1 23444444444444444443222  4444444444444444432 1 1244444444444


Q ss_pred             ccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccc
Q 041178          210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      +++|.+.+.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            444444331  2244444555555555544432  334444455555555554443322  4445555555555555543


Q ss_pred             ccCCCCCCCCCccEEEccCCcCcc
Q 041178          290 SIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       290 ~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                       ++ .+..+++|+.|++++|.++.
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccC
Confidence             22 24445555555555554443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=2.5e-18  Score=192.13  Aligned_cols=171  Identities=27%  Similarity=0.419  Sum_probs=79.4

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      ..+++|++|++++|.+... + .+..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++ +| .+..+++|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence            3445555555555554332 2 35555555555555555554322  4555555555555555543 22 3445555555


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      |+|++|.+.+.  +.+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            55555554431  2344444555555555444332  234444444444444444443322  44444444444444444


Q ss_pred             cccCCccccCCCCCCEEEccCCccc
Q 041178          264 SGPIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      ++.  ..+..+++|+.|++++|.+.
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CCC--hHHccCCCCCEEEccCCcCc
Confidence            432  22444444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=5.2e-18  Score=189.52  Aligned_cols=190  Identities=26%  Similarity=0.349  Sum_probs=117.8

Q ss_pred             CcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCC
Q 041178          109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH  188 (725)
Q Consensus       109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  188 (725)
                      +..+++..+.+....+  +..+++|++|++++|.+.. +| .+..+++|++|+|++|.+++..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3334445444443332  3456666667777766663 33 46666777777777776665433  66667777777777


Q ss_pred             CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCC
Q 041178          189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP  268 (725)
Q Consensus       189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  268 (725)
                      |.+.+ + +.+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|
T Consensus        97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            76664 2 2566667777777777766542  3466666777777777766643  456666777777777776665544


Q ss_pred             ccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCccc
Q 041178          269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF  314 (725)
Q Consensus       269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  314 (725)
                        +..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence              66666777777777766643  2466666777777777666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.2e-17  Score=162.67  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=63.8

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555553 2333332  45556666666555544445555555555555555555544555555555555555555


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS  240 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  240 (725)
                      .++...+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            555333333444444444444444444444444444444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=162.57  Aligned_cols=103  Identities=23%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCC-ccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIP-PEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      ++++++|.+.. +|..+.  ..+++|++++|.+++..| ..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555554432 333221  233455555555444322 22344444444444444444333334444444444444444


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCC
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLF  216 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~  216 (725)
                      .+++..+..+..+++|++|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCC
Confidence            443333333333333333333333333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=3.7e-18  Score=163.40  Aligned_cols=156  Identities=15%  Similarity=0.229  Sum_probs=127.1

Q ss_pred             ccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCC
Q 041178          487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR  566 (725)
Q Consensus       487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  566 (725)
                      ...+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            355677888888888887 444 5778888888888888665  334788889999999999999887788899999999


Q ss_pred             EEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178          567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       567 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  646 (725)
                      +|++++|++++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            99999999988888889999999999999998445666 68899999999999999985 34 78889999999999998


Q ss_pred             ccc
Q 041178          647 LQG  649 (725)
Q Consensus       647 l~g  649 (725)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.6e-17  Score=175.05  Aligned_cols=128  Identities=22%  Similarity=0.246  Sum_probs=75.6

Q ss_pred             CEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccC
Q 041178          134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIG-QLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN  212 (725)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  212 (725)
                      ++++++++.++ .+|..+.  +.+++|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56777777777 4565443  3466777777776655555555 666666666666666655555566666666666666


Q ss_pred             CcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178          213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS  264 (725)
Q Consensus       213 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (725)
                      |.+.+..+..|..+++|++|++++|++++..|..|..+++|+.|++++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            6655554555555555555555555555444444555555555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=5.3e-18  Score=161.46  Aligned_cols=153  Identities=22%  Similarity=0.278  Sum_probs=120.1

Q ss_pred             CeEeccCceecCCCCccccCcccccccccccccccccccc-ccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK-SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       518 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      +.+++++|+++ .+|..+.  .++++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56677777775 5565443  3788888888888876554 478888999999999999888888898999999999999


Q ss_pred             cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCcC---ceeccCCCCCCCCCC
Q 041178          597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFK---DARMEGNKGLCGNIK  673 (725)
Q Consensus       597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~---~~~~~gn~~lc~~~~  673 (725)
                      |.+++..|..|.++++|++|+|++|++++.+|..|..+++|++|++++|++.+.++......   ...+.++...|+.|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            99988888888999999999999999999889999999999999999999988776432111   114455666777653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=4.1e-18  Score=195.32  Aligned_cols=193  Identities=21%  Similarity=0.206  Sum_probs=126.1

Q ss_pred             eCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec
Q 041178          449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS  528 (725)
Q Consensus       449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  528 (725)
                      +++.|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            33344443 44666778888888888888887 67777778999999999999998 78888999999999999999999


Q ss_pred             CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccc-cccccccccccCccCcccc
Q 041178          529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIH-LSKLDLSYNFLGKEMPFQI  607 (725)
Q Consensus       529 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~  607 (725)
                       .+|..+..+++|++|+|++|.++. +|..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.  
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--  359 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--  359 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred             -ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence             779999999999999999999975 7888999999999999999999999998876533 23589999999998885  


Q ss_pred             cCCCCCCEEeCCCC--------ccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          608 CNMKSLEKLNLCHN--------NLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       608 ~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                          .|+.|++++|        .+.+..+..+..+..+....+++|-+.+...
T Consensus       360 ----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          360 ----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             ----C-----------------------------------------CCCGGGC
T ss_pred             ----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence                4667778777        4445555556677777888899998865443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.1e-17  Score=160.23  Aligned_cols=153  Identities=20%  Similarity=0.245  Sum_probs=85.7

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      +.+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34445555555555555 333 3555555555555555433  2234555555566666555555545555566666666


Q ss_pred             EEccCCcCCccCccccCCCCCCCEEEccCCc-CcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCc
Q 041178          208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ  286 (725)
Q Consensus       208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  286 (725)
                      |++++|.+.+..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            6666666655555556666666666666665 33 333 466666666666666666542 2 46666677777777766


Q ss_pred             cc
Q 041178          287 LS  288 (725)
Q Consensus       287 l~  288 (725)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.2e-20  Score=207.50  Aligned_cols=106  Identities=29%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      |+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|++|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5555555555553 343 555555555555555555 245555555555555555555544 34 455555555555555


Q ss_pred             cccCccC-cccccCCCCCCEEeCCCCcccccc
Q 041178          597 NFLGKEM-PFQICNMKSLEKLNLCHNNLSGFI  627 (725)
Q Consensus       597 N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~  627 (725)
                      |.+++.+ |..++.+++|+.|+|++|++++.+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            5555444 555555555555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1e-17  Score=167.98  Aligned_cols=169  Identities=24%  Similarity=0.361  Sum_probs=108.6

Q ss_pred             CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178          106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA  185 (725)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (725)
                      +.+++.++++.+.+.+..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+  +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            444555666666665432  4666777777777777776 344 56677777777777777775433  77777777777


Q ss_pred             cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178          186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      +++|.+++ +|. +.. ++|++|++++|.+.+. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++
T Consensus        92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            77777764 232 222 6777777777776553 2 466777777777777777643 2 46666666666666666665


Q ss_pred             cCCccccCCCCCCEEEccCCcccc
Q 041178          266 PIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      .  ..+..+++|+.|++++|.+++
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             h--HHhccCCCCCEEeCCCCcccC
Confidence            4  445666666666666666653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.6e-17  Score=165.05  Aligned_cols=167  Identities=23%  Similarity=0.211  Sum_probs=84.7

Q ss_pred             CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178          443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL  522 (725)
Q Consensus       443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  522 (725)
                      .++..++++++.+++..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            34455566666655433  34555666666666665552 33 45555556666666655554433  555555555555


Q ss_pred             cCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc
Q 041178          523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE  602 (725)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  602 (725)
                      ++|++++. |.. .. ++|++|++++|.+++. + .+..+++|++|++++|++++. + .++.+++|++|++++|.+++.
T Consensus        93 ~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCc-Ccc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            55555532 211 11 5555555555555542 2 345555555555555555432 2 344455555555555555433


Q ss_pred             CcccccCCCCCCEEeCCCCccc
Q 041178          603 MPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       603 ~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                        ..+..+++|+.|++++|+++
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              33444555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.7e-19  Score=196.16  Aligned_cols=192  Identities=18%  Similarity=0.142  Sum_probs=143.1

Q ss_pred             cCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCe
Q 041178          440 GYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK  519 (725)
Q Consensus       440 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  519 (725)
                      ..+++|+.|++++|++. .+|..++.+++|+.|++++|......|...           ..+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence            44667777777777765 456666666666666665543111111000           001134455555666666666


Q ss_pred             Ee-ccCc-------------eecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhc
Q 041178          520 LI-LSLN-------------QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK  585 (725)
Q Consensus       520 L~-L~~n-------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  585 (725)
                      |+ ++.|             .++.. |     ...|+.|+|++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             Ccchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence            65 4444             34321 1     1358999999999998 676 999999999999999998 88999999


Q ss_pred             ccccccccccccccCccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCCCEEeCcCCCccccCCCC
Q 041178          586 LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNLSHIDISYNELQGPIPNS  654 (725)
Q Consensus       586 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~  654 (725)
                      +++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |..|..+++|+.|++++|++++..|..
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999999999977 77 8999999999999999999887 999999999999999999999887743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.8e-17  Score=172.43  Aligned_cols=218  Identities=11%  Similarity=0.020  Sum_probs=130.8

Q ss_pred             CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcc----cccCCccccccCCC
Q 041178          418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI----SGSIPLEIGESFKL  493 (725)
Q Consensus       418 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~----~~~~p~~~~~l~~L  493 (725)
                      |++|+.+++.+ .++.....+|.++++|+.+++++|.+....+..|.++.++..+....+..    ....+..+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55566666655 55555555566666666666666665555555565555555554443211    11223344455555


Q ss_pred             c-EEEccCCcccccCchhhh----cCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEE
Q 041178          494 Q-VLDISSNHIVGEIPVQLA----KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYL  568 (725)
Q Consensus       494 ~-~L~Ls~n~l~~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  568 (725)
                      + .+.+....   .++..+.    ...+++.+.+.++-...........+++|+.++|++|+++.+.+.+|.+|++|++|
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            5 44443321   1222111    23344555544431110011111236778888888877777666778888888888


Q ss_pred             eCCCCcCcccChhhhhcccccc-cccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178          569 NLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID  641 (725)
Q Consensus       569 ~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  641 (725)
                      ++++| +...-+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|++....+..|.++++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            88777 6666666778888887 888877 66666667888888888888888888877777888888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.4e-17  Score=173.26  Aligned_cols=222  Identities=13%  Similarity=0.014  Sum_probs=162.3

Q ss_pred             CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcc----ccccCccccCCCCC
Q 041178          394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF----YGEISFNWRNFPKL  469 (725)
Q Consensus       394 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l----~~~~~~~~~~~~~L  469 (725)
                      |++|+.+++.. .++..-+..|.+|++|+.+++.+|.+....+.+|..+.++..+....+..    .......|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            78888888877 66666666788888888888888888777777788777777777665322    22234456667777


Q ss_pred             c-EEECCCCcc-cccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccc
Q 041178          470 G-TFIVSMNNI-SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS  547 (725)
Q Consensus       470 ~-~L~l~~n~~-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (725)
                      + .+.+..... ...+...-....+++.+.+.++-...........|++|+.+++++|+++...+.+|.++++|+.++++
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            6 444443211 11111111124566777776653222222222348999999999999997777889999999999999


Q ss_pred             ccccccccccccccCCCCC-EEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeC
Q 041178          548 ANKLRSWIPKSIGNLLKLR-YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL  618 (725)
Q Consensus       548 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  618 (725)
                      +| +..+.+.+|.+|++|+ .+++++ .++..-+.+|.+|++|+.+++++|.++...+..|.++++|+.++.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            98 8887788999999999 999998 777777889999999999999999998888889999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.8e-16  Score=146.19  Aligned_cols=134  Identities=24%  Similarity=0.261  Sum_probs=109.0

Q ss_pred             CCCCCeEeccCceec-CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccc
Q 041178          514 LFSLNKLILSLNQLS-GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL  592 (725)
Q Consensus       514 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  592 (725)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356778888888877 66777778888888888888888775  678888888899999888888788888888899999


Q ss_pred             cccccccCccC-cccccCCCCCCEEeCCCCccccccC---ccccCCCCCCEEeCcCCCccc
Q 041178          593 DLSYNFLGKEM-PFQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDISYNELQG  649 (725)
Q Consensus       593 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g  649 (725)
                      ++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999886642 2678889999999999999986655   478889999999999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=9.9e-16  Score=145.64  Aligned_cols=108  Identities=25%  Similarity=0.319  Sum_probs=53.6

Q ss_pred             CCcEEECCCCCCCccCch-hccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          108 HLVHLNLSFNIVFGTIPP-QVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      ++++|++++|.+.+..+. .|+.+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            555555555555444432 2555555555555555555555555555555555555555555444444444444444444


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLL  215 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  215 (725)
                      ++|.+++..|..+..+++|++|++++|.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            44444444444444444444444444433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.8e-16  Score=144.25  Aligned_cols=128  Identities=22%  Similarity=0.260  Sum_probs=104.9

Q ss_pred             CCCCeEeccCceec-CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccc
Q 041178          515 FSLNKLILSLNQLS-GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD  593 (725)
Q Consensus       515 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  593 (725)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56777888888777 66777777888888888888888775  6788888899999999988887888888888999999


Q ss_pred             ccccccCcc-CcccccCCCCCCEEeCCCCccccccC---ccccCCCCCCEEeCcC
Q 041178          594 LSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDISY  644 (725)
Q Consensus       594 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~  644 (725)
                      +++|.+++. .|..++.+++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999998764 34778889999999999999987665   5788889999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=4.1e-16  Score=145.03  Aligned_cols=133  Identities=22%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             CCCCcEEECCCCCCC-ccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041178          106 FPHLVHLNLSFNIVF-GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL  184 (725)
Q Consensus       106 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (725)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777777777765 56666666677777777777776654  556666777777777776665566655566666666


Q ss_pred             EcCCCcCCCCC-CCCcCCCCCCcEEEccCCcCCccCc---cccCCCCCCCEEEccCCcCc
Q 041178          185 ALCHNNLYGPI-PPSLGNLSNLANFYLNNNLLFDSIP---LVLGNLKSISTLDLSKNQLS  240 (725)
Q Consensus       185 ~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~  240 (725)
                      ++++|.+++.. +..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666665431 1445555556666666555544333   24555555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=7.6e-16  Score=146.39  Aligned_cols=131  Identities=27%  Similarity=0.310  Sum_probs=108.5

Q ss_pred             CeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccccc
Q 041178          518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN  597 (725)
Q Consensus       518 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  597 (725)
                      +.+++++|.++ .+|..+.  ++|++|++++|.++. +|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45667777766 4554442  578888888888875 6678888889999999999988888888889999999999999


Q ss_pred             ccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       598 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      .+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9988888889999999999999999997777788999999999999999986554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=4.1e-14  Score=150.13  Aligned_cols=240  Identities=11%  Similarity=0.081  Sum_probs=114.1

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL  186 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  186 (725)
                      ..++.+.+..+ +...-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .++...+.+|.+|++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            45555555432 333333455554 5666666554 443444455553 466666654 444444455666666666666


Q ss_pred             CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178          187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP  266 (725)
Q Consensus       187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  266 (725)
                      ++|.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+. +.++..
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            66555533333333 456666666533 44444455556666666665542 33333334444 455555552 334333


Q ss_pred             CCccccCCCCCCEEEccCCccc-----cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCc
Q 041178          267 IPSVIGNLESLLQLDLSENQLS-----GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS  341 (725)
Q Consensus       267 ~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  341 (725)
                      ...+|.+|++|+.+++.++.+.     ...+..|.++++|+.+++. +.++.+...+|.+|++|+.+.+..+ ++..-+.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            4445555555555555544332     2223344444444444444 2233333344444444444444322 3323333


Q ss_pred             cCcCCCCCCEEEccCCcC
Q 041178          342 SIGNLSNLRLLYLYNNGF  359 (725)
Q Consensus       342 ~l~~l~~L~~L~L~~n~l  359 (725)
                      +|.++ +|+.+++.+|..
T Consensus       341 aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             SSSSS-CCCEEEECCSSC
T ss_pred             hCCCC-CCCEEEEcCCCC
Confidence            44444 444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=1.2e-15  Score=143.12  Aligned_cols=134  Identities=24%  Similarity=0.219  Sum_probs=105.5

Q ss_pred             CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      .+.+++++++++ .+|..+  .++|++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            355666666666 344333  36778888888888776666678888888888888888877777778888888888888


Q ss_pred             cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      |.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.+.+|.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            888877777788899999999999999877666678899999999999999887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=3.7e-16  Score=142.15  Aligned_cols=127  Identities=21%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             CCCCcEEECCCCCCC-ccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041178          106 FPHLVHLNLSFNIVF-GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL  184 (725)
Q Consensus       106 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (725)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+.++++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356666677666665 56666666666666666666666644  456666666666666666665555555556666666


Q ss_pred             EcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCc---cccCCCCCCCEEEc
Q 041178          185 ALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIP---LVLGNLKSISTLDL  234 (725)
Q Consensus       185 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L  234 (725)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            6666665542 22444555555555555555444333   23444444444444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.61  E-value=3e-14  Score=151.96  Aligned_cols=237  Identities=10%  Similarity=0.021  Sum_probs=105.5

Q ss_pred             cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCC
Q 041178          221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS  300 (725)
Q Consensus       221 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  300 (725)
                      .+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......|.++..|+.+.+..+...  +........+
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence            445555566666554332 2233344555556665555443 33333445555666665555544321  2223333455


Q ss_pred             ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178          301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT  380 (725)
Q Consensus       301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  380 (725)
                      |+.+.+... ++.+....+..+..++.+.+..+... .....|..+..++.+....+.+.   ...+..+.+|+.+.+.+
T Consensus       232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred             CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence            555555332 22223344555555555555444332 33344555555555554433211   12333444454444433


Q ss_pred             ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC
Q 041178          381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS  460 (725)
Q Consensus       381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  460 (725)
                      + ++..-..+|.+|.+|+.+++..+                         ++.....+|.++.+|+.+++..+ ++....
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-------------------------v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  359 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-------------------------VEEIGKRSFRGCTSLSNINFPLS-LRKIGA  359 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-------------------------CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-------------------------ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence            2 22222333444444444444322                         33333344445555555555433 333334


Q ss_pred             ccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178          461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV  495 (725)
Q Consensus       461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  495 (725)
                      .+|.+|++|+.+++..+- . .+..+|.++++|+.
T Consensus       360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence            445555555555554321 1 12234555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=9.2e-15  Score=137.09  Aligned_cols=132  Identities=24%  Similarity=0.301  Sum_probs=79.9

Q ss_pred             CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCcc
Q 041178           71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE  150 (725)
Q Consensus        71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  150 (725)
                      |.|+++.|+..           ++.. ++   ....++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..
T Consensus         7 C~~~~l~~~~~-----------~l~~-~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A            7 CSGTEIRCNSK-----------GLTS-VP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             EETTEEECCSS-----------CCSS-CC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             eCCCEEEecCC-----------CCcc-CC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence            78998888632           1211 12   112356777777777776655556677777777777777777555555


Q ss_pred             CcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc
Q 041178          151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD  217 (725)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  217 (725)
                      |.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6666677777776666665555555666666666666666654444334555555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=7.2e-14  Score=148.99  Aligned_cols=331  Identities=11%  Similarity=0.002  Sum_probs=153.4

Q ss_pred             CCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCC
Q 041178          147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL  226 (725)
Q Consensus       147 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  226 (725)
                      -..+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            3346667777777777533 44344455666666666666543 33233344555555554444322 212222223322


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178          227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL  306 (725)
Q Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  306 (725)
                      .                        .++.....  ........+|.++++|+.+.+.++. .......|.++.+|+.+.+
T Consensus       140 ~------------------------~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l  192 (394)
T 4fs7_A          140 D------------------------FKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKL  192 (394)
T ss_dssp             C------------------------CSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCC
T ss_pred             c------------------------ccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEc
Confidence            2                        11111111  1111223445566666666665432 2233445556666666666


Q ss_pred             cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccc
Q 041178          307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG  386 (725)
Q Consensus       307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  386 (725)
                      ..+ ++.+...+|.++..|+.+.+..+...  +........+|+.+.+... ++..-...+..+..++.+.+..+... .
T Consensus       193 ~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i  267 (394)
T 4fs7_A          193 PRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I  267 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E
T ss_pred             CCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e
Confidence            544 34444455666666666665544332  1222333455666665432 22222233445555555555444322 2


Q ss_pred             ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCC
Q 041178          387 IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF  466 (725)
Q Consensus       387 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~  466 (725)
                      ....+..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..        
T Consensus       268 ~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I--------  334 (394)
T 4fs7_A          268 GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI--------  334 (394)
T ss_dssp             CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE--------
T ss_pred             eccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE--------
Confidence            3334455555555544433221   123444555555554332 33333344444555555554322 3322        


Q ss_pred             CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccc
Q 041178          467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL  544 (725)
Q Consensus       467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  544 (725)
                                      -..+|.+|.+|+.+++..+ ++......|.+|.+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       335 ----------------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          335 ----------------GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ----------------CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             ----------------hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence                            3344555555555555443 44344445666666666666543 22 223456666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.1e-13  Score=146.80  Aligned_cols=271  Identities=11%  Similarity=0.056  Sum_probs=144.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178          129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF  208 (725)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  208 (725)
                      .+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3466666666653 443444566664 5777777655 554444555553 577777764 4444445566666777777


Q ss_pred             EccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccc
Q 041178          209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      ++++|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            7766666554444454 466666666533 44444455666666666666543 33333444444 456666653 2344


Q ss_pred             cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCccccc
Q 041178          289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG  368 (725)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  368 (725)
                      ...+..|.++++|+.+++.++.+..                   +......+.+|.++++|+.+.+.+ .+...-...|.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~  320 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG  320 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence            3444555555566666555544430                   000012233445555555555542 23333344455


Q ss_pred             CCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCC-CCcEEECcCccc
Q 041178          369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT-SLERVRFNQNNL  431 (725)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l  431 (725)
                      ++++|+.+.+..+ ++..-+.+|.++ +|+.+++.+|......+..|.+++ .++.+++..+.+
T Consensus       321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            5555555555333 333344556666 666666666665554555565553 566777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.9e-14  Score=135.38  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=86.2

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      ++++++++.+. .+|..+.  ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777777664 3454432  56777777777776 56667777777777777777777666666777777777777777


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS  240 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  240 (725)
                      .+++..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            777666666667777777777777766555555666666666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=7.6e-17  Score=154.36  Aligned_cols=152  Identities=24%  Similarity=0.262  Sum_probs=113.0

Q ss_pred             cCCCcEEEccCCcccccCch------hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCC
Q 041178          490 SFKLQVLDISSNHIVGEIPV------QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL  563 (725)
Q Consensus       490 l~~L~~L~Ls~n~l~~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  563 (725)
                      ...++.++++.+.+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence            33445555555555555444      77888888888888888886 56 77788888888888888875 666777778


Q ss_pred             CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEeCCCCccccccCcc----------cc
Q 041178          564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLSGFIPRC----------FE  632 (725)
Q Consensus       564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~  632 (725)
                      +|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++.+|..          +.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            88888888888875 44 68888888888888888865432 46788888888888888888776653          77


Q ss_pred             CCCCCCEEeCcCCCcc
Q 041178          633 GMHNLSHIDISYNELQ  648 (725)
Q Consensus       633 ~l~~L~~L~ls~N~l~  648 (725)
                      .+++|++||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            788888887  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=7.3e-15  Score=137.56  Aligned_cols=132  Identities=20%  Similarity=0.177  Sum_probs=91.2

Q ss_pred             hcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccc
Q 041178          512 AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK  591 (725)
Q Consensus       512 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  591 (725)
                      ..+.+|+.|++++|+++. +|......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            345556666666666663 343222233777777777777764  46777777888888888777665555677788888


Q ss_pred             ccccccccCccCcc--cccCCCCCCEEeCCCCccccccCcc----ccCCCCCCEEeCcCCCcc
Q 041178          592 LDLSYNFLGKEMPF--QICNMKSLEKLNLCHNNLSGFIPRC----FEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       592 L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~  648 (725)
                      |++++|.+ +.+|.  .+..+++|+.|++++|+++ .+|..    +..+++|++||+++|...
T Consensus        93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888887 44554  6778888888888888887 44553    778888888888888765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=2.7e-16  Score=150.57  Aligned_cols=132  Identities=24%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCC
Q 041178          486 EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL  565 (725)
Q Consensus       486 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  565 (725)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            55666666666666666665 44 6666677777777777776 456666666777777777777766 34 46667777


Q ss_pred             CEEeCCCCcCcccCh-hhhhcccccccccccccccCccCccc----------ccCCCCCCEEeCCCCccc
Q 041178          566 RYLNLSNNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQ----------ICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       566 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~  624 (725)
                      ++|++++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777777777754322 35667777777777777776665542          67778888776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.1e-14  Score=134.40  Aligned_cols=132  Identities=18%  Similarity=0.106  Sum_probs=82.0

Q ss_pred             cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178          488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY  567 (725)
Q Consensus       488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  567 (725)
                      ..+.+|++|++++|++... +......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3445555666666655532 33222233666666666666643  45666677777777777776644444567777777


Q ss_pred             EeCCCCcCcccChh--hhhcccccccccccccccCccCcc----cccCCCCCCEEeCCCCccc
Q 041178          568 LNLSNNQFIQKIPI--EVEKLIHLSKLDLSYNFLGKEMPF----QICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       568 L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~  624 (725)
                      |++++|++. .+|.  .+..+++|+.|++++|.++ .+|.    .+..+++|+.||+++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777763 4444  5667777777777777774 3444    3677777777777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=8.9e-14  Score=129.13  Aligned_cols=110  Identities=25%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             cccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCC
Q 041178          541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCH  620 (725)
Q Consensus       541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  620 (725)
                      .+.+++++|.++. +|..+  .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4566677776665 45444  26778888888888777777788888888888888888777777778888888888888


Q ss_pred             CccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178          621 NNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN  653 (725)
Q Consensus       621 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  653 (725)
                      |++++..+..|..+++|++|++++|++.+..+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            888877777788888888888888888876653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.1e-13  Score=125.85  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=74.5

Q ss_pred             ccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178          542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN  621 (725)
Q Consensus       542 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  621 (725)
                      +.+++++|.+.. +|..+.  ++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            455666665544 444332  56777777777777666777777777777777777776655555677778888888888


Q ss_pred             ccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      ++++..+..|..+++|++|++++|++.+..+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            8876666567778888888888888775544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=3.2e-12  Score=118.54  Aligned_cols=103  Identities=27%  Similarity=0.297  Sum_probs=46.6

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      +++++++|.+.. +|..+  .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            455555555432 33333  144555555555555444444444555555555555444333333444444444444444


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLL  215 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l  215 (725)
                      ++++..+..+..+++|++|++++|.+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            44433333344444444444444433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=1.4e-10  Score=123.51  Aligned_cols=331  Identities=8%  Similarity=0.029  Sum_probs=151.8

Q ss_pred             CccccCCC-CCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCc---CCccCccccCCCCCCCEEEccCCcCcccCCccc
Q 041178          172 PQEIGQLS-LINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL---LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL  247 (725)
Q Consensus       172 p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l  247 (725)
                      ..+|.++. .|+.+.+..+ ++..-..+|.+|++|+.+.+..+.   +......+|..+.+|+.+.+..+ ++......|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            44566664 5888887653 554555667777777777776653   33333455566666665555432 232333344


Q ss_pred             cCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccc
Q 041178          248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA  327 (725)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  327 (725)
                      ..+.+|+.+.+..+ +.......|..+.+|+.+.+..+                         ++.+...+|.. .+|+.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-------------------------~~~I~~~aF~~-~~l~~  186 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-------------------------VTAIEERAFTG-TALTQ  186 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-------------------------CCEECTTTTTT-CCCSE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-------------------------eeEeccccccc-cceeE
Confidence            45555555555322 22223334444455555544432                         22222222322 23444


Q ss_pred             cccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcC
Q 041178          328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL  407 (725)
Q Consensus       328 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  407 (725)
                      +.+..+... ....++..+..++......+......-..+..........           ..+.....+..+.+.. .+
T Consensus       187 i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v  253 (394)
T 4gt6_A          187 IHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GV  253 (394)
T ss_dssp             EEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TE
T ss_pred             EEECCcccc-cccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccceEEcCC-cc
Confidence            443322211 2233444455555544433322111000000000000000           0000111122222211 11


Q ss_pred             CCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccc
Q 041178          408 SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI  487 (725)
Q Consensus       408 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~  487 (725)
                      +..-...|.++..|+.+.+..+. ......+|.++++|+.+.+. +.++......|.+|.+|+.+.+..+ ++..-..+|
T Consensus       254 ~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  330 (394)
T 4gt6_A          254 ARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF  330 (394)
T ss_dssp             EEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             eEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence            11122344555555555554332 22334455566666666664 3344444555666677777766543 443445567


Q ss_pred             cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccc
Q 041178          488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL  551 (725)
Q Consensus       488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  551 (725)
                      .+|.+|+.+.+..+ ++......|.+|.+|+.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            77777777777543 555556677888888888887765431   3455677777777766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=5.4e-12  Score=117.39  Aligned_cols=103  Identities=29%  Similarity=0.394  Sum_probs=55.8

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      +.+++++|.+ +.+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4566666665 34444442  56666666666666555555666666666666666655443344455555555555555


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLL  215 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l  215 (725)
                      .+.+..+..+..+++|++|++++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            55543333344455555555554444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=7.6e-11  Score=125.51  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             CccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcc
Q 041178          460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT  539 (725)
Q Consensus       460 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  539 (725)
                      ...|.++..|+.+.+..+.. .....++.++..|+.+.+. +.+.......|.+|.+|+.+++..+ ++..-..+|.+|.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            33455555555555543322 1233445556666666664 2344444556666777777776654 3334455677777


Q ss_pred             ccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccccccc
Q 041178          540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL  599 (725)
Q Consensus       540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  599 (725)
                      +|+.+.+..+ ++.+...+|.+|++|+.+++.++...   ...+..+.+|+.+.+..|.+
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            7777777543 55545567777777777777776532   13455666777776665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.8e-13  Score=143.86  Aligned_cols=157  Identities=21%  Similarity=0.222  Sum_probs=83.8

Q ss_pred             CCcEEEccCCcccccCchhhhc-----CCCCCeEeccCceecCCCCccc-cCcccccccccccccccccccccc-----c
Q 041178          492 KLQVLDISSNHIVGEIPVQLAK-----LFSLNKLILSLNQLSGGMPFEL-GSLTELQYLDLSANKLRSWIPKSI-----G  560 (725)
Q Consensus       492 ~L~~L~Ls~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-----~  560 (725)
                      .|+.|++++|.++......+..     .++|++|+|++|.++......+ ..+++|++|+|++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4555555555554333222222     1455566666665543211111 234456666666666654333222     2


Q ss_pred             cCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccc----cC
Q 041178          561 NLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGF----IP  628 (725)
Q Consensus       561 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p  628 (725)
                      ..++|++|+|++|.++..    ++..+..+++|++|+|++|.++..    ++..+...++|++|+|++|.++..    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            345666777776666432    333445566677777777766432    244455566777777777776642    33


Q ss_pred             ccccCCCCCCEEeCcCCCcc
Q 041178          629 RCFEGMHNLSHIDISYNELQ  648 (725)
Q Consensus       629 ~~l~~l~~L~~L~ls~N~l~  648 (725)
                      ..+...++|++||+++|++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHhCCCCCEEeccCCCCC
Confidence            34445566777777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=2.1e-13  Score=143.29  Aligned_cols=166  Identities=19%  Similarity=0.175  Sum_probs=85.9

Q ss_pred             CCCCEEeCcCCccccccCcccc-----CCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCC
Q 041178          443 PNLTFLDLSQNNFYGEISFNWR-----NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSL  517 (725)
Q Consensus       443 ~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  517 (725)
                      +.|++|++++|.++......+.     ..++|+.|++++|.++......+                       ...+++|
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~L~~L  128 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-----------------------LPVFLRA  128 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-----------------------HHHHHTE
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-----------------------HHHHHhc
Confidence            5677777777776643322221     12455555555555433211111                       1123344


Q ss_pred             CeEeccCceecCCCCccc-----cCccccccccccccccccc----cccccccCCCCCEEeCCCCcCccc----Chhhhh
Q 041178          518 NKLILSLNQLSGGMPFEL-----GSLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQK----IPIEVE  584 (725)
Q Consensus       518 ~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~  584 (725)
                      +.|+|++|.+++.....+     ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+...    ++..+.
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence            555555554443222221     1235566666666665432    233345566667777777666532    244455


Q ss_pred             cccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccccCccc
Q 041178          585 KLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGFIPRCF  631 (725)
Q Consensus       585 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  631 (725)
                      ..++|++|+|++|.++..    ++..+...++|++|||++|.++..-...+
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            566677777777776543    33344456777777777777765444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.4e-11  Score=128.87  Aligned_cols=103  Identities=22%  Similarity=0.224  Sum_probs=61.2

Q ss_pred             eEeccCc-eecCCCCccccCccccccccccc-cccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178          519 KLILSLN-QLSGGMPFELGSLTELQYLDLSA-NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY  596 (725)
Q Consensus       519 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  596 (725)
                      .++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3456665 555 3555 66666666666664 666665555666666666666666666666666666666666666666


Q ss_pred             cccCccCcccccCCCCCCEEeCCCCccc
Q 041178          597 NFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      |+|++..+..+..++ |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666554444444443 666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=7.5e-11  Score=123.31  Aligned_cols=108  Identities=21%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCC-CCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178           71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSF-NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP  149 (725)
Q Consensus        71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  149 (725)
                      |.|.+|.|...+          ++.+ +| . +..+++|++|+|++ |.+.+..+..|+++++|++|+|++|++++..|.
T Consensus         8 C~~~~v~~~~~n----------~l~~-ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A            8 HGSSGLRCTRDG----------ALDS-LH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             SSSSCEECCSSC----------CCTT-TT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             ccCCEEEcCCCC----------CCCc-cC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence            888888885321          2332 44 2 66677777777775 777766666777777777777777777776666


Q ss_pred             cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCC
Q 041178          150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY  192 (725)
Q Consensus       150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  192 (725)
                      .|.++++|++|+|++|++++..+..+..++ |++|++.+|.+.
T Consensus        75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777777777777777777654444444443 666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=6.7e-09  Score=109.85  Aligned_cols=145  Identities=12%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178          415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ  494 (725)
Q Consensus       415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~  494 (725)
                      +..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            334444555544332 23333344555555666655543 33344455566666666665432 3333344566667777


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCC
Q 041178          495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK  564 (725)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  564 (725)
                      .+.+.++.++......|.+|.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++.+...+|.++..
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            7777666666566667777777777777654 44344566777777877777654 55545566766643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=8.8e-09  Score=108.92  Aligned_cols=169  Identities=10%  Similarity=0.054  Sum_probs=123.3

Q ss_pred             ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178          415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ  494 (725)
Q Consensus       415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~  494 (725)
                      +..+..+..+.+... ........+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++..-..++..+.+|+
T Consensus       190 ~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          190 YPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            334445555554432 22334456677888999888654 44455667888999999998765 5545567788899999


Q ss_pred             EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCc
Q 041178          495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ  574 (725)
Q Consensus       495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  574 (725)
                      .+.+..+ +.......|.+|.+|+.+.+.++.++..-..+|.++.+|+.++|..+ ++.+...+|.+|++|+++.+..+ 
T Consensus       267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-  343 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-  343 (379)
T ss_dssp             EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred             ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence            9998654 55556678899999999999988887666788999999999999764 66666678999999999999765 


Q ss_pred             CcccChhhhhccccc
Q 041178          575 FIQKIPIEVEKLIHL  589 (725)
Q Consensus       575 l~~~~p~~~~~l~~L  589 (725)
                      ++..-..+|.++..+
T Consensus       344 v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          344 ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CCEECTTTTTTSSCC
T ss_pred             cCEEchhHhhCCCCC
Confidence            555555677776443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=2.7e-09  Score=110.91  Aligned_cols=84  Identities=20%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             cCCCCCEEeCCCCcCcccChhhhh---cccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccccCccccC
Q 041178          561 NLLKLRYLNLSNNQFIQKIPIEVE---KLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGFIPRCFEG  633 (725)
Q Consensus       561 ~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  633 (725)
                      .+++|+.|+|.+|.+.+..+..+.   .++.|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            356777777777776544433333   467777777777777653    3334456678888888888776443333332


Q ss_pred             -CCCCCEEeCcCCC
Q 041178          634 -MHNLSHIDISYNE  646 (725)
Q Consensus       634 -l~~L~~L~ls~N~  646 (725)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3567887776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=2.6e-09  Score=111.00  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             cCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccc--cCCCCCEEeCCC--CcCccc---
Q 041178          506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIG--NLLKLRYLNLSN--NQFIQK---  578 (725)
Q Consensus       506 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~---  578 (725)
                      .+...+..+++|+.|+|++|.-. .++. + .+++|+.|++..|.+.......+.  .+++|++|+|+.  |...+.   
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            34556677888999998877311 2232 3 378899999988887654334443  688999999863  221111   


Q ss_pred             --Chhhh--hcccccccccccccccCccCcccc---cCCCCCCEEeCCCCccccc----cCccccCCCCCCEEeCcCCCc
Q 041178          579 --IPIEV--EKLIHLSKLDLSYNFLGKEMPFQI---CNMKSLEKLNLCHNNLSGF----IPRCFEGMHNLSHIDISYNEL  647 (725)
Q Consensus       579 --~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l  647 (725)
                        +...+  ..+++|++|+|++|.+....+..+   ..+++|++|+|+.|.+...    ++..+..+++|+.|++++|.+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence              11122  357899999999999875544333   3578999999999999864    444456679999999999987


Q ss_pred             c
Q 041178          648 Q  648 (725)
Q Consensus       648 ~  648 (725)
                      +
T Consensus       320 ~  320 (362)
T 2ra8_A          320 S  320 (362)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.73  E-value=2.2e-11  Score=119.94  Aligned_cols=22  Identities=23%  Similarity=-0.105  Sum_probs=15.1

Q ss_pred             CCCccCcceeCCCC-CEEEEEcC
Q 041178           69 NPCAWVGISCNQAE-RIISINLS   90 (725)
Q Consensus        69 ~~C~w~gv~C~~~~-~v~~l~l~   90 (725)
                      ..|+|.|+.|+..+ +|+.+...
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~   98 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINS   98 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEec
Confidence            46899999998643 56554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=4e-08  Score=96.69  Aligned_cols=105  Identities=30%  Similarity=0.287  Sum_probs=71.1

Q ss_pred             ccCcccccc--ccccccccc---cccccccccCCCCCEEeCCCCcCcc--cChhhhhcccccccccccccccCccCcccc
Q 041178          535 LGSLTELQY--LDLSANKLR---SWIPKSIGNLLKLRYLNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPFQI  607 (725)
Q Consensus       535 ~~~l~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  607 (725)
                      +...+.|+.  ++++.|...   +.++....++++|++|+|++|++++  .+|..+..+++|+.|+|++|.+++.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            444555665  667777432   2222233567888888888888877  4556777888888888888888664  233


Q ss_pred             cCCC--CCCEEeCCCCccccccCc-------cccCCCCCCEEe
Q 041178          608 CNMK--SLEKLNLCHNNLSGFIPR-------CFEGMHNLSHID  641 (725)
Q Consensus       608 ~~l~--~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~  641 (725)
                      ..++  +|++|+|++|.+++.+|.       .+..+++|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4444  888888888888876652       356677787776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=3.1e-08  Score=92.75  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=43.0

Q ss_pred             cCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeC--CCCccccc----
Q 041178          561 NLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNL--CHNNLSGF----  626 (725)
Q Consensus       561 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----  626 (725)
                      ..++|++|+|++|.+...    +...+...++|++|+|++|.++..    +...+...++|++|+|  ++|.+...    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            334445555555544322    222233334555555555555332    2334445556666666  55666532    


Q ss_pred             cCccccCCCCCCEEeCcCCCc
Q 041178          627 IPRCFEGMHNLSHIDISYNEL  647 (725)
Q Consensus       627 ~p~~l~~l~~L~~L~ls~N~l  647 (725)
                      +...+...++|++|++++|.+
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeccCCCC
Confidence            233444456666666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.45  E-value=3.2e-08  Score=92.74  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=46.7

Q ss_pred             Cccccccccccccccccc----cccccccCCCCCEEeCCCCcCccc----Chhhhhcccccccccc--cccccCcc----
Q 041178          537 SLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDL--SYNFLGKE----  602 (725)
Q Consensus       537 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----  602 (725)
                      ..++|++|+|++|.+...    +.+.+...++|++|+|++|.+...    +...+...++|++|+|  ++|.++..    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            334455555555544321    122333445566666666665433    3334455556666666  55666443    


Q ss_pred             CcccccCCCCCCEEeCCCCccc
Q 041178          603 MPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       603 ~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      +...+...++|++|+|++|.+.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeccCCCCC
Confidence            2334445567777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.87  E-value=4.2e-06  Score=76.10  Aligned_cols=84  Identities=11%  Similarity=0.075  Sum_probs=50.8

Q ss_pred             cccccccccccccccccccccccCCCCCEEeCCCCc-CcccChhhhhcc----cccccccccccc-cCccCcccccCCCC
Q 041178          539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ-FIQKIPIEVEKL----IHLSKLDLSYNF-LGKEMPFQICNMKS  612 (725)
Q Consensus       539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~  612 (725)
                      ..|+.||+++|.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356777777776655444556677777777777774 444333334432    357777777764 55443344556677


Q ss_pred             CCEEeCCCCc
Q 041178          613 LEKLNLCHNN  622 (725)
Q Consensus       613 L~~L~Ls~N~  622 (725)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=4.8e-06  Score=75.73  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             CCCcEEEccCCcccccCchhhhcCCCCCeEeccCce-ecCCCCccccCc----cccccccccccc-cccccccccccCCC
Q 041178          491 FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSL----TELQYLDLSANK-LRSWIPKSIGNLLK  564 (725)
Q Consensus       491 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  564 (725)
                      ..|+.||+++|.++..--..+.+|++|+.|+|++|. +++.--..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467777777777766555556677777777777774 543322333332    467777777764 55443345566777


Q ss_pred             CCEEeCCCCc
Q 041178          565 LRYLNLSNNQ  574 (725)
Q Consensus       565 L~~L~Ls~n~  574 (725)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.13  E-value=0.0002  Score=66.35  Aligned_cols=88  Identities=18%  Similarity=0.193  Sum_probs=44.2

Q ss_pred             cccCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeCCCCc---ccc--
Q 041178          559 IGNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNN---LSG--  625 (725)
Q Consensus       559 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~--  625 (725)
                      +..-+.|+.|+|++|.+...    +...+..-+.|++|+|++|.++..    +-+.+..-+.|++|+|++|.   +..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            33344555555555555322    223333445556666666665433    22334444567777776542   221  


Q ss_pred             --ccCccccCCCCCCEEeCcCCC
Q 041178          626 --FIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       626 --~~p~~l~~l~~L~~L~ls~N~  646 (725)
                        .+...+..-++|+.|++++|.
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCCC
Confidence              133445555667777766554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.86  E-value=0.00026  Score=65.59  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=28.3

Q ss_pred             cCCCcEEEccCC-ccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccc
Q 041178          490 SFKLQVLDISSN-HIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLR  552 (725)
Q Consensus       490 l~~L~~L~Ls~n-~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  552 (725)
                      -+.|++|+|++| .+...    +...+..-+.|+.|+|++|++...    +.+.+..-+.|++|+|++|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            445666666654 44321    222333344555555555555421    1222223344444555544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.79  E-value=0.0015  Score=56.43  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             cccccccccC-ccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcccc
Q 041178          591 KLDLSYNFLG-KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP  650 (725)
Q Consensus       591 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  650 (725)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|++...
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5666666664 25664433  4688899999998877777788888899999999988643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.96  E-value=0.0063  Score=52.48  Aligned_cols=56  Identities=16%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             EEeCCCCcCc-ccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178          567 YLNLSNNQFI-QKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       567 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555553 23443221  24566666666665555556666677777777777654

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.76  E-value=0.01  Score=39.17  Aligned_cols=19  Identities=21%  Similarity=0.499  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHhhcccccCC
Q 041178          707 ICLIGFKVLFQRRNDSTKQ  725 (725)
Q Consensus       707 ~~~~~~~~~~~~~~~~~k~  725 (725)
                      ++++.++++++||++++||
T Consensus        26 ii~~~~~~~~RRr~~~~kR   44 (44)
T 2ks1_B           26 VVALGIGLFMRRRHIVRKR   44 (44)
T ss_dssp             HHHHHHHHHHHTTTCCSCC
T ss_pred             HHHHHHHHHhhhhHhhccC
Confidence            3334445555555555554

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.66  E-value=0.0081  Score=39.52  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHhhcccccCC
Q 041178          707 ICLIGFKVLFQRRNDSTKQ  725 (725)
Q Consensus       707 ~~~~~~~~~~~~~~~~~k~  725 (725)
                      ++++.++++++||++++||
T Consensus        25 ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A           25 IVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             HHHHHHHHHHHTTCSSCCC
T ss_pred             HHHHHHHHHhhhhhhhhcc
Confidence            3334444555555555554

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=93.32  E-value=0.081  Score=34.74  Aligned_cols=17  Identities=24%  Similarity=0.503  Sum_probs=7.4

Q ss_pred             HHHHHHHHhhcccccCC
Q 041178          709 LIGFKVLFQRRNDSTKQ  725 (725)
Q Consensus       709 ~~~~~~~~~~~~~~~k~  725 (725)
                      .+++.++++||+.++||
T Consensus        28 ~l~~~~~~RRR~~~~kK   44 (44)
T 2jwa_A           28 GVVFGILIKRRQQKIRK   44 (44)
T ss_dssp             HHHHHHHHHHHCSCCCC
T ss_pred             HHHHHhheehhhhhccC
Confidence            33334444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	725
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-13
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.9 bits (229), Expect = 4e-21
 Identities = 78/313 (24%), Positives = 133/313 (42%), Gaps = 21/313 (6%)

Query: 28  EALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCN---QAERI 84
           +  ALL+ KK L N  +  L+SW               T      W+G+ C+   Q  R+
Sbjct: 7   DKQALLQIKKDLGNPTT--LSSWL------------PTTDCCNRTWLGVLCDTDTQTYRV 52

Query: 85  ISINLSSMGLNGTLQEFA-FSSFPHLVHLNLSFNIVF-GTIPPQVGNLSKLQHLDLGNNQ 142
            +++LS + L       +  ++ P+L  L +       G IPP +  L++L +L + +  
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 143 LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNL 202
           ++G IP  +  +  L +L F  N L G +P  I  L  +  +    N + G IP S G+ 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 203 SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262
           S L      +               +++ +DLS+N L G      G+  N   ++L  NS
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNL 322
           L+  +  V  +       DL  N++ G++P  L  L  L  +++  N+L   IP   GNL
Sbjct: 233 LAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290

Query: 323 KSLSALGLHINQL 335
           +         N+ 
Sbjct: 291 QRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 9e-16
 Identities = 63/306 (20%), Positives = 104/306 (33%), Gaps = 33/306 (10%)

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSG--PIPKSLRNLTSLERVRFNQN-NLSGKV 435
           C     G +  +      +  +++   +L    PIP SL NL  L  +      NL G +
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495
             A      L +L ++  N  G I         L T   S N +SG++P  I     L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
           +    N I G IP        L   +                           N+L   I
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISR-----------------------NRLTGKI 190

Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
           P +  N          +   ++     +      ++              ++   K+L  
Sbjct: 191 PPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS---TTFKDARMEGNKGLCGNI 672
           L+L +N + G +P+    +  L  +++S+N L G IP       F  +    NK LCG+ 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 673 KGLPSC 678
             LP+C
Sbjct: 309 --LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 67/259 (25%), Positives = 102/259 (39%), Gaps = 5/259 (1%)

Query: 176 GQLSLINELALCHNNLYG--PIPPSLGNLSNLANFYLNNNL-LFDSIPLVLGNLKSISTL 232
            Q   +N L L   NL    PIP SL NL  L   Y+     L   IP  +  L  +  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 233 DLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP 292
            ++   +SG+IP  L  +  L  L    N+LSG +P  I +L +L+ +    N++SG+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLL 352
            S G+ S L      S +                A       +     S +         
Sbjct: 167 DSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 353 YLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP 412
                    F   ++G  K++  L+L  NR+ G +P  +  L  L  +N+  N+L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 413 KSLRNLTSLERVRFNQNNL 431
               NL   +   +  N  
Sbjct: 286 -QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 5/276 (1%)

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGFYGF--VPEEIGYLKSIFELELCTN-RLRGGIPHSIG 392
            GV+  +      +  L L          +P  +  L  +  L +     L G IP +I 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
            LT+L  + +   ++SG IP  L  + +L  + F+ N LSG +  +    PNL  +    
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA 512
           N   G I  ++ +F KL T +    N           +  L  +D+S N + G+  V   
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL-F 217

Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
                 + I            ++G    L  LDL  N++   +P+ +  L  L  LN+S 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608
           N    +IP +   L        + N      P   C
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.4 bits (228), Expect = 1e-20
 Identities = 75/402 (18%), Positives = 135/402 (33%), Gaps = 51/402 (12%)

Query: 266 PIPSVI--GNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLK 323
           PI  +     L   ++  L +  ++ ++  +  +L  +T +      + S     +  L 
Sbjct: 11  PINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG--VEYLN 66

Query: 324 SLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRL 383
           +L+ +    NQL  + P  + NL+ L  + + NN      P       +   L       
Sbjct: 67  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 384 RGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHP 443
              + +        +  N   +  +     SL+ L+   +V   +   +    E      
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI 503
           N               S    N           N IS   PL I  +  L  L ++ N +
Sbjct: 185 NKVSDISVLAKLTNLESLIATN-----------NQISDITPLGILTN--LDELSLNGNQL 231

Query: 504 VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIP------- 556
                  LA L +L  L L+ NQ+S   P     LT+L  L L AN++ +  P       
Sbjct: 232 KD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 557 -------------KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
                          I NL  L YL L  N      P+    L  L +L  + N +    
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKV--SD 343

Query: 604 PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
              + N+ ++  L+  HN +S   P     +  ++ + ++  
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 5e-20
 Identities = 69/386 (17%), Positives = 137/386 (35%), Gaps = 35/386 (9%)

Query: 201 NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260
            L+      L    + D++     +L  ++TL   +  +  SI   +  L+NL  +   +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 75

Query: 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI-- 318
           N L+   P  + NL  L+ + ++ NQ++   P++     +   +     +    +  +  
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 319 ----------LGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF-YGFVPEEI 367
                     + ++ +LS L        G   + +  L+NL  L   +           +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
             L ++  L    N++    P  I   T L  +++  N L      +L +LT+L  +   
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 428 QNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487
            N +S            LT L L  N                     +       I    
Sbjct: 250 NNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS--- 304

Query: 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547
                L  L +  N+I    P  ++ L  L +L  + N++S      L +LT + +L   
Sbjct: 305 -NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 548 ANKLRSWIPKSIGNLLKLRYLNLSNN 573
            N++    P  + NL ++  L L++ 
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 16/215 (7%)

Query: 95  NGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHL 154
           N        +   +L  L  + N +    P     L+ L  L L  NQL       +  L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASL 240

Query: 155 NQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL 214
             L  L    NQ+    P  +  L+ + EL L  N +    P +            N   
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 215 LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
               I     NLK+++ L L  N +S   P    +L+ L  L+  +N +S    S + NL
Sbjct: 299 DISPIS----NLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSDV--SSLANL 350

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
            ++  L    NQ+S   P  L NL+ +T + L   
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 3e-17
 Identities = 77/390 (19%), Positives = 143/390 (36%), Gaps = 35/390 (8%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSL 160
           F  ++    +   L    V  T+     +L ++  L      +  +    + +LN L  +
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 71

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220
            F  NQL    P  +  L+ + ++ + +N +    P +          + N     D + 
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 221 LV------------LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS-GPI 267
            +            + ++ ++S L   +    G+    L  L+NL  L     S +    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327
            SV+  L +L  L  + NQ+S   P+    L++L  +SL  N L       L +L +L+ 
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGI 387
           L L  NQ++ + P  +  L+ L  L L  N      P       +  EL           
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE----D 299

Query: 388 PHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTF 447
              I NL  L  + +  N++S   P  + +LT L+R+ F  N +S     +     N+ +
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMN 477
           L    N           N  ++    ++  
Sbjct: 356 LSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 1   MGISILNILILSLLLNLSHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNV 60
            G  + +I  L+ L NL+    + +    LA L     L            + P      
Sbjct: 227 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 61  SSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVF 120
            +  +   N         +  + +  + L    ++        SS   L  L  + N V 
Sbjct: 287 LTNLELNENQL-EDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKV- 341

Query: 121 GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165
            +    + NL+ +  L  G+NQ++ + P  + +L ++  L  +  
Sbjct: 342 -SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 52/286 (18%), Positives = 104/286 (36%), Gaps = 13/286 (4%)

Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438
           C++     +P  +    +  L+++  N ++       +NL +L  +    N +S     A
Sbjct: 17  CSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498
           F     L  L LS+N          +   +L      +  +  S+   + +   ++ L  
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGT 133

Query: 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
           +     G        +  L+ + ++   ++       G    L  L L  NK+      S
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 559 IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL 618
           +  L  L  L LS N         +    HL +L L+ N L  ++P  + + K ++ + L
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYL 249

Query: 619 CHNNLSGFIPRCFEGMH------NLSHIDISYNELQGPIPNSTTFK 658
            +NN+S      F          + S + +  N +Q      +TF+
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 6e-18
 Identities = 50/282 (17%), Positives = 98/282 (34%), Gaps = 14/282 (4%)

Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
            +  +  S   L   +P  L    +  +L L +N ++        NL++L  L L  N++
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347
           S   P +   L  L  + L  N L      +   L+ L      I ++   + + +  + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL 407
            +  L        G        +K +  + +    +         +LTEL L     N +
Sbjct: 128 VVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG---NKI 183

Query: 408 SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFP 467
           +     SL+ L +L ++  + N++S     +    P+L  L L+ N           +  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHK 242

Query: 468 KLGTFIVSMNNISG------SIPLEIGESFKLQVLDISSNHI 503
            +    +  NNIS         P    +      + + SN +
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 11/257 (4%)

Query: 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ 166
           P    L+L  N +         NL  L  L L NN+++ + P     L +L  LY   NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226
           L     +    L  +         +   +   L  +  +     N              +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
           K +S + ++   ++       G   +L  L+L  N ++    + +  L +L +L LS N 
Sbjct: 150 KKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS---- 342
           +S     SL N   L  + L +N L   +P  L + K +  + LH N ++ +  +     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 343 --IGNLSNLRLLYLYNN 357
                 ++   + L++N
Sbjct: 266 GYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 2e-16
 Identities = 55/258 (21%), Positives = 100/258 (38%), Gaps = 11/258 (4%)

Query: 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
              LDL NN++T +   +  +L  L +L    N++    P     L  +  L L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 193 GPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252
             +P  +         + N             N   +  L  +  + SG    +   +  
Sbjct: 93  E-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
           L  + +   +++  IP   G   SL +L L  N+++     SL  L++L  + L  NS+S
Sbjct: 152 LSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 313 SFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF------VPEE 366
           +     L N   L  L L+ N+L   +P  + +   ++++YL+NN            P  
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 367 IGYLKSIFELELCTNRLR 384
                S   + L +N ++
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 5e-18
 Identities = 57/276 (20%), Positives = 105/276 (38%), Gaps = 8/276 (2%)

Query: 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
           T    +  L  ++P  +   +    ++L+ N +S    +      +L  L L  N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQLNGVIPSSIGNLSNL 349
              +   L+ L  + L  N+    + P     L  L  L L    L  + P     L+ L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
           + LYL +N       +    L ++  L L  NR+      +   L  L  + + +N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKL 469
             P + R+L  L  +    NNLS    EA      L +L L+ N +  +       +  L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWL 250

Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVG 505
             F  S + +  S+P  +       +  +++N + G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 4e-15
 Identities = 50/276 (18%), Positives = 86/276 (31%), Gaps = 8/276 (2%)

Query: 135 HLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLS-LINELALCHNNLYG 193
                   L   +P  I      + ++   N++             L       +     
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 194 PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL 253
                 G          +N  L    P     L  + TL L +  L    P     L+ L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313
             LYL  N+L         +L +L  L L  N++S     +   L SL  + L  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSI 373
             P    +L  L  L L  N L+ +   ++  L  L+ L L +N +             +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWL 250

Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409
            +    ++ +   +P  +       L  +  N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 8e-15
 Identities = 53/288 (18%), Positives = 94/288 (32%), Gaps = 31/288 (10%)

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
           VP  I    +   + L  NR+      S      L ++ +  N L+     +   L  LE
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 423 RVRFNQNNLSGKVYE-AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
           ++  + N     V    F     L  L L +          +R    L    +  N +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
                  +   L  L +  N I          L SL++L+L  N+++   P     L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK 601
             L L AN L +   +++  L  L+YL L++N ++                         
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-------------------- 243

Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
                      L+K     + +   +P   + +       ++ N+LQG
Sbjct: 244 -----RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 60/276 (21%), Positives = 103/276 (37%), Gaps = 7/276 (2%)

Query: 275 ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334
           E  +     +  L  ++P+ +   ++   + L  N +S          ++L+ L LH N 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFV-PEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
           L  +  ++   L+ L  L L +N     V P     L  +  L L    L+   P     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
           L  L  + + +N L      + R+L +L  +  + N +S     AF    +L  L L QN
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 454 NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAK 513
                    +R+  +L T  +  NN+S      +     LQ L ++ N  V +       
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPL 246

Query: 514 LFSLNKLILSLNQLSGGMPFELG--SLTELQYLDLS 547
              L K   S +++   +P  L    L  L   DL 
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 51/237 (21%), Positives = 79/237 (33%), Gaps = 2/237 (0%)

Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN 478
            + +R+  + N +S     +F    NLT L L  N      +  +     L    +S N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 479 ISGSI-PLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS 537
              S+ P       +L  L +    +    P     L +L  L L  N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
           L  L +L L  N++ S   ++   L  L  L L  N+     P     L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
            L       +  +++L+ L L  N       R       L     S +E+   +P  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 2e-14
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 4/235 (1%)

Query: 55  ANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNL 114
               N++               +      +  ++LS      ++    F     L  L+L
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 115 SFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQE 174
               +    P     L+ LQ+L L +N L  +       L  L  L+   N++     + 
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 175 IGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDL 234
              L  ++ L L  N +    P +  +L  L   YL  N L       L  L+++  L L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 235 SKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
           + N        +    + L      S+ +   +P     L       L+ N L G
Sbjct: 233 NDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 9e-14
 Identities = 53/257 (20%), Positives = 83/257 (32%), Gaps = 5/257 (1%)

Query: 106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165
                 + L  N +             L  L L +N L  +       L  L  L    N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 166 QLHGPI-PQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLG 224
                + P     L  ++ L L    L    P     L+ L   YL +N L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 225 NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE 284
           +L +++ L L  N++S     +   L +L  L L+ N ++   P    +L  L+ L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 285 NQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG 344
           N LS     +L  L +L  + L  N               L       +++   +P    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQ--- 266

Query: 345 NLSNLRLLYLYNNGFYG 361
            L+   L  L  N   G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 6/255 (2%)

Query: 84  IISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL 143
              I L    ++  +   +F +  +L  L L  N++          L+ L+ LDL +N  
Sbjct: 34  SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 144 TGVIPP-EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNL 202
              + P     L +L +L+ D   L    P     L+ +  L L  N L      +  +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 203 SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262
            NL + +L+ N +          L S+  L L +N+++   P +  +L  L  LYL++N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNL 322
           LS      +  L +L  L L++N             + L      S+ +   +P     L
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RL 268

Query: 323 KSLSALGLHINQLNG 337
                  L  N L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 60.2 bits (144), Expect = 3e-10
 Identities = 57/338 (16%), Positives = 100/338 (29%), Gaps = 27/338 (7%)

Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
              +L+L+   LS S+P    +L SL       NSL+  +P +  +LKSL     ++  L
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESL---VASCNSLTE-LPELPQSLKSLLVDNNNLKAL 93

Query: 336 NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT 395
           + + P       +   L            + I    +  +           I      L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
           EL  +       +     +         +          + E      NL FL     + 
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515
               +            +                          S   +       + L 
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTD-------------LPELPQSLTFLDVSENIFSGLS 260

Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
            L   +  LN  S  +         L+ L++S NKL   +P        L  L  S N  
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNH- 315

Query: 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL 613
           + ++P   E   +L +L + YN L +E P    +++ L
Sbjct: 316 LAEVP---ELPQNLKQLHVEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 63/327 (19%), Positives = 104/327 (31%), Gaps = 25/327 (7%)

Query: 251 SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310
                L L +  LS  +P +  +LESL     S N L+  +P    +L SL V +    +
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 311 LSSFIPPILGNLKSLSALGLHINQL---NGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI 367
           LS   P +     S + L             I     N          +  F      ++
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427
             L  +  L   T                L L ++   +        L+NL  L  +  +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 428 QNNLSGKVYEAFGYHPNLTFLDL--------SQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
            N L                 +             F       +    +L   +  +N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
           S  I         L+ L++S+N ++ E+P   A    L +LI S N L+  +P    +  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPELPQN-- 325

Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLR 566
            L+ L +  N LR   P    ++  LR
Sbjct: 326 -LKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 257 YLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIP 316
             Y N+ S  I S+     SL +L++S N+L   +P     L  L       N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VP 320

Query: 317 PILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRL 351
            +  NLK L    +  N L    P    ++ +LR+
Sbjct: 321 ELPQNLKQLH---VEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266
                 N   + I  +     S+  L++S N+L   +P     L     L    N L+  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE- 318

Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL 301
           +P +  NL+    L +  N L    P    ++  L
Sbjct: 319 VPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 50  WTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHL 109
             L   +          +      V  +       +  NL  +  +           P L
Sbjct: 227 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 286

Query: 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHG 169
             LN+S N     +P       +L+ L    N L   +P    +   L+ L+ + N L  
Sbjct: 287 EELNVSNN-KLIELPA---LPPRLERLIASFNHLAE-VPELPQN---LKQLHVEYNPLRE 338

Query: 170 --PIPQEIGQLSLIN 182
              IP+ +  L + +
Sbjct: 339 FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 58/345 (16%), Positives = 97/345 (28%), Gaps = 37/345 (10%)

Query: 203 SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262
                  LNN  L  S+P +  +L+S   L  S N L+  +P    +L +L +      +
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNL 322
           LS   P             L    +S +    L  L + + + +     +S         
Sbjct: 93  LSDLPPL------------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 140

Query: 323 KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR 382
                               +  L NL  L                 L     +      
Sbjct: 141 SL------EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 383 LRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442
                  ++  LT +   N     L    P           +           +     +
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 443 PNLTFLDLSQNNFYGEISFNW-----RNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
                 +L  N +Y   S N         P L    VS N +   +P       +L+ L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLI 310

Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQ 542
            S NH+  E+P       +L +L +  N L    P    S+ +L+
Sbjct: 311 ASFNHL-AEVP---ELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 569 NLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
               N    +I    +    L +L++S N L  E+P        LE+L    N+L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLAE-VP 320

Query: 629 RCFEGMHNLSHIDISYNELQG 649
              E   NL  + + YN L+ 
Sbjct: 321 ---ELPQNLKQLHVEYNPLRE 338

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 44/209 (21%), Positives = 66/209 (31%), Gaps = 7/209 (3%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
            S     + +N         +PP +        L L  N L       +    +L  L  
Sbjct: 6   VSKVASHLEVNCDKR-NLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLV 222
           D  +L          +    +     +N    +P     L  L    ++ N L       
Sbjct: 63  DRAELTKLQVDGTLPVLGTLD---LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282
           L  L  +  L L  N+L    P  L     L  L L +N+L+     ++  LE+L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 283 SENQLSGSIPISLGNLSSLTVMSLFSNSL 311
            EN L  +IP        L    L  N  
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 48/211 (22%), Positives = 76/211 (36%), Gaps = 7/211 (3%)

Query: 126 QVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA 185
           +V  ++    ++     LT  +PP++        L+   N L+      +   + + +L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPF 245
           L    L          L  L    L++N L     L           D+S N+L+     
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLG 118

Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMS 305
           +L  L  L  LYL  N L    P ++     L +L L+ N L+      L  L +L  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
           L  NSL + IP        L    LH N   
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 47/208 (22%), Positives = 69/208 (33%), Gaps = 7/208 (3%)

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
            +  +   + VN  + +L+  +P  L        +  ++N L          +  LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509
           L                P LGT  +S N +             L VLD+S N +      
Sbjct: 62  LD--RAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLG 118

Query: 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN 569
            L  L  L +L L  N+L    P  L    +L+ L L+ N L       +  L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 570 LSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
           L  N     IP        L    L  N
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 7/211 (3%)

Query: 342 SIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401
            +  +++   +          +P ++   K    L L  N L      ++   T L  +N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 402 MCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF 461
           +  +       +    L  L  +  + N     +       P LT LD+S N        
Sbjct: 62  L--DRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLI 521
             R   +L    +  N +    P  +  + KL+ L +++N++       L  L +L+ L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 522 LSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
           L  N L   +P        L +  L  N   
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 45/208 (21%), Positives = 71/208 (34%), Gaps = 25/208 (12%)

Query: 198 SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257
            +  +++      +   L  ++P  L   K  + L LS+N L      +L   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 258 LYSNSLSGPI---------------------PSVIGNLESLLQLDLSENQLSGSIPISLG 296
           L    L+                        P +   L +L  LD+S N+L+     +L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 297 NLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYN 356
            L  L  + L  N L +  P +L     L  L L  N L  +    +  L NL  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 357 NGFYGFVPEEIGYLKSIFELELCTNRLR 384
           N  Y  +P+       +    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 8/191 (4%)

Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
           ++P ++ +     +L +S N +       L     L +L L   +L+        +L  L
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVL 79

Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK 601
             LDLS N+L+S               ++S N+        +  L  L +L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 602 EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN---ELQGPIPNSTTFK 658
             P  +     LEKL+L +NNL+        G+ NL  + +  N    +      S    
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198

Query: 659 DARMEGNKGLC 669
            A + GN  LC
Sbjct: 199 FAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 1/75 (1%)

Query: 69  NPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVG 128
           N    +          +     +      L     +   +L  L L  N ++ TIP    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 129 NLSKLQHLDLGNNQL 143
               L    L  N  
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 21/176 (11%), Positives = 42/176 (23%), Gaps = 3/176 (1%)

Query: 534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD 593
           E+  +     ++     L + +P  +        L+LS N         +     L++L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
           L    L K        +     L+         + +    +  L         L      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 654 STTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSLVMIILLICL 709
                         L     GL +          +      +    L  +  L  L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 17/277 (6%)

Query: 86  SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG 145
           +++L+   L+  +     S    ++      + +      +  +  ++QH+DL N+ +  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 146 VIPPEI-GHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSN 204
                I    ++L++L  +  +L  PI   + + S +  L L   + +          S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 205 LANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG---------SIPFSLGNLSNLGI 255
                LN +  FD     +    +  +  +++  LSG                  + + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSE-NQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314
               S  L          L  L  L LS    +     + LG + +L  + +F       
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRL 351
           +  +    ++L  L ++ +    +   +IGN  N  +
Sbjct: 241 LQLL---KEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 37/270 (13%), Positives = 81/270 (30%), Gaps = 17/270 (6%)

Query: 76  ISCNQAERIISINLSSMGLNGTLQE---FAFSSFPHLVHLNLSFN-IVFGTIPPQVGNLS 131
           +  +   R++S  + +     +  +       S   + H++LS + I   T+   +   S
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 71

Query: 132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
           KLQ+L L   +L+  I   +   + L  L             +    S      L  +  
Sbjct: 72  KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 192 YGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK---------SISTLDLSKNQLSGS 242
           +      +       +  +    L      +  +            +         L   
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 191

Query: 243 IPFSLGNLSNLGILYL-YSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL 301
                  L+ L  L L     +       +G + +L  L +      G++ +    L  L
Sbjct: 192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

Query: 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
            +     +  ++   P +GN K+    G+ 
Sbjct: 252 QINC---SHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS-GGMPFELGSLTELQYLDLSANKL- 551
           Q LD++  ++  ++     +L S   +     +        E  S   +Q++DLS + + 
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK 611
            S +   +    KL+ L+L   +    I   + K  +L +L+LS      E   Q     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
                 L  +    F  +  +         I+   L G   N
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 37/274 (13%), Positives = 85/274 (31%), Gaps = 16/274 (5%)

Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE- 458
           +++   +L   +   L +   +   R  ++ +   + E F     +  +DLS +      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ-----LAK 513
           +        KL    +    +S  I   + ++  L  L++S      E  +Q      ++
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 514 LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN 573
           L  LN                      +  L+LS  +           + +   L   + 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 574 QFIQKIPIEVEKLI----HLSKLDLSY-NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
                +  +  +      +L  L LS    +  E   ++  + +L+ L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 629 RCFEGMHNLSHIDISYNELQGPIPNSTTFKDARM 662
              E    L H+ I+ +        +   K  + 
Sbjct: 243 LLKE---ALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 20/261 (7%)

Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYL---YNNGFYGFVPEE 366
           +  +  P + G L S   +     +   +      + S  R+ ++    +      +   
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 367 IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF 426
           +     +  L L   RL   I +++   + LV +N+                +       
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
           N +       +            ++Q N  G      ++                     
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-------- 178

Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILS-LNQLSGGMPFELGSLTELQYLD 545
                   +    S  +  +   +  +L  L  L LS    +      ELG +  L+ L 
Sbjct: 179 -------HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 546 LSANKLRSWIPKSIGNLLKLR 566
           +        +      L  L+
Sbjct: 232 VFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 16/271 (5%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
           Q LDL    L   +   +     + +     + +  P+ +      +   + L ++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEV 60

Query: 194 -PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252
             +   L   S L N  L    L D I   L    ++  L+LS               S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG---------SIPISLGNLSSLTV 303
             +  L  +         +    + +   +++  LSG            +     + + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 304 MSLFSNSLSSFIPPILGNLKSLSALGL-HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF 362
               S  L +        L  L  L L     +       +G +  L+ L ++     G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
           +      L     L++  +        +IGN
Sbjct: 241 LQLLKEALPH---LQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 12/240 (5%)

Query: 362 FVPEEIGYLKSIFELEL-CTNRLRGGIPHSIGNLTELVLVNMCENHLSG-PIPKSLRNLT 419
             P+  G L S   +   C             +   +  +++  + +    +   L   +
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 71

Query: 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI 479
            L+ +      LS  +      + NL  L+LS  + + E +             ++++  
Sbjct: 72  KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 480 SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN---------QLSGG 530
                  +  +       I+  ++ G          S                   L   
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 191

Query: 531 MPFELGSLTELQYLDLS-ANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589
              E   L  LQ+L LS    +       +G +  L+ L +        + +  E L HL
Sbjct: 192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 57/450 (12%), Positives = 115/450 (25%), Gaps = 22/450 (4%)

Query: 204 NLANFYLNNNLLFDS-IPLVLGNLKSISTLDLSKNQLSG----SIPFSLGNLSNLGILYL 258
           ++ +  +    L D+    +L  L+    + L    L+      I  +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 259 YSNSLSGPIPSVIG-----NLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313
            SN L       +          + +L L    L+G+    L +           +   +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 314 FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSI 373
            +      L     L          +     + ++   L         F    +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
                   +     P  +  L         +N        + +       +  N+    G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 434 KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL 493
                 G     + L        G  +    +  ++     S+  +S +      E  +L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
               +       E     +  F+        + L+         ++  +  D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR---E 359

Query: 554 WIPKSIGNLLKLRYLNLSNNQF----IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC- 608
                      LR L L++          +   +     L +LDLS N LG     Q+  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 609 ----NMKSLEKLNLCHNNLSGFIPRCFEGM 634
                   LE+L L     S  +    + +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 10/218 (4%)

Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLF-SLNKLILSLNQLSG----GMPFELGSLTELQYL 544
           S  +Q LDI    +      +L  L      + L    L+      +   L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 545 DLSANKLRSWIPKSIGNLL-----KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599
           +L +N+L       +   L     K++ L+L N          +   +         +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKD 659
              +      +     L+         +  C     +   +             + +  D
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 660 ARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMF 697
               G + LC  +K  P        +            
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 218

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 60/463 (12%), Positives = 120/463 (25%), Gaps = 28/463 (6%)

Query: 181 INELALCHNNL-YGPIPPSLGNLSNLANFYLNNNLLFD----SIPLVLGNLKSISTLDLS 235
           I  L +    L        L  L       L++  L +     I   L    +++ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 236 KNQLSGSIPFSLG-----NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
            N+L       +          +  L L +  L+G    V+ +    L      +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350
           +  +   L    ++          +     +  S   L   +         ++ N     
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410
                        P ++  LK         N        +       + +   +    G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLG 470
                  L    R+R       G   +  G    +     S        +       +L 
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 471 TFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG 530
              +               SF        S+ +     +   ++ +       + +L  G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK----LRYLNLSNNQFIQKIPIEVEKL 586
           +      L  L    L+   +      S+   L     LR L+LSNN       +++ + 
Sbjct: 364 LGQPGSVLRVL---WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 587 I-----HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
           +      L +L L   +  +EM         L+ L     +L 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEME------DRLQALEKDKPSLR 457

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 22/216 (10%)

Query: 105 SFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164
           +  + + +    + V  T+     +L  +  L      +T +    + +LN L  L    
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLG 224
           NQ+    P +        EL+         I       +         ++   +    L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 225 NLKSISTLDLSKNQL--------------SGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
            L        + + L                S    L NLS L  L    N +S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
           + +L +L+++ L  NQ+S   P  L N S+L +++L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 8e-07
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 22/217 (10%)

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
            L   + +   +++++  + ++  +L  +  +      ++    E   Y  NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA 512
           N                     +      +I                ++         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 513 KLFSLNKLILSLNQLSGGMPFE--------------LGSLTELQYLDLSANKLRSWIPKS 558
            L+     I +++ L+G    +              L +L++L  L    NK+    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 559 IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLS 595
           + +L  L  ++L NNQ     P+      +L  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 36/252 (14%), Positives = 71/252 (28%), Gaps = 42/252 (16%)

Query: 321 NLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380
            L +   +    + +   +  +  +L  +  L  +  G      E + YL ++  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
           N++    P            N+ +          L+N++++  ++  +            
Sbjct: 73  NQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500
                            +I+             +S+ N   S    +    KL  L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIG 560
           N I    P                          L SL  L  + L  N++    P  + 
Sbjct: 183 NKISDISP--------------------------LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 561 NLLKLRYLNLSN 572
           N   L  + L+N
Sbjct: 215 NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 18/228 (7%)

Query: 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188
            L+    +  G + +T  +      L+ + +L      +     + +  L+ +  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLG 248
           N +    P              N      +I  +        T     +    +   +L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
            L          + L+G       +                S    L NLS LT +    
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYN 356
           N +S   P  L +L +L  + L  NQ++ V P  + N SNL ++ L N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 22/221 (9%)

Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVM 304
           F    L+N   +    ++++  +     +L+ +  L      ++ +I   +  L++L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68

Query: 305 SLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVP 364
            L  N ++   P       +   L  +  +    I       +         +       
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 365 EEIGYLKSIFELELCTNRLRGGIPH--------------SIGNLTELVLVNMCENHLSGP 410
             +  L          + L G                   + NL++L  +   +N +S  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLS 451
            P  L +L +L  V    N +S           NL  + L+
Sbjct: 189 SP--LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
            ++   L  L    N +    P  + +L  L  + L NNQ++ V P  + + + L  +  
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 163 DVNQ 166
             NQ
Sbjct: 225 T-NQ 227

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 546 LSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF 605
           L+A  +         N ++ R L+L   + I  I      L     +D S N + K   F
Sbjct: 3   LTAELIEQ--AAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 606 QICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
               ++ L+ L + +N +        + + +L+ + ++ N L
Sbjct: 60  P--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
           +++      L+L        I      L +   +D  +N++  +       L +L++L  
Sbjct: 14  YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 70

Query: 163 DVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNN---NLLFDS 218
           + N++          L  + EL L +N+L        L +L +L    +           
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 219 IPLVLGNLKSISTLDLSK 236
              V+  +  +  LD  K
Sbjct: 131 RLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 125 PQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL 184
            Q  N  + + LDL   ++  VI      L+Q  ++ F  N++          L  +  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 185 ALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLS---KNQLS 240
            + +N +          L +L    L NN L +      L +LKS++ L +         
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 241 GSIPFSLGNLSNLGIL 256
               + +  +  + +L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 171 IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230
           +   + +    ++ AL    L     P L   +        +++   ++ ++  N+  + 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELL 68

Query: 231 TLDLSKNQLSG--SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
           +L+LS N+L     +   +    NL IL L  N L             L +L L  N LS
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 289 GSIPISLGNLSSL 301
            +       +S++
Sbjct: 129 DTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL 565
           ++ + ++K +  ++  L L  L      +L +      L+  ++   + +     N+ +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIPEL 67

Query: 566 RYLNLSNNQF--IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623
             LNLSNN+   +  +   V+K  +L  L+LS N L  E          LE+L L  N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 624 SGFIP 628
           S    
Sbjct: 128 SDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590
           +   +    +     L    LRS     +        LN  ++     + I  E +  L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELL 68

Query: 591 KLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            L+LS N L +  +M   +    +L+ LNL  N L             L  + +  N L 
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 649 GPIPNSTTFKD 659
               + +T+  
Sbjct: 129 DTFRDQSTYIS 139

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 12/127 (9%)

Query: 112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171
           L+L+   +  T+   +  L  + HLDL +N+L   +PP +  L  L       +      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLE--VLQASDNALEN 57

Query: 172 PQEIGQLSLINELALCHNNL-YGPIPPSLGNLSNLANFYLNNNLL------FDSIPLVLG 224
              +  L  + EL LC+N L        L +   L    L  N L       + +  +L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 225 NLKSIST 231
           ++ SI T
Sbjct: 118 SVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 520 LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKI 579
           L L+   L+      L  L  + +LDLS N+LR+  P ++  L  L  L    +    + 
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ--ASDNALEN 57

Query: 580 PIEVEKLIHLSKLDLSYNFL-GKEMPFQICNMKSLEKLNLCHNNLS---GFIPRCFEGMH 635
              V  L  L +L L  N L        + +   L  LNL  N+L    G   R  E + 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 636 NLSHI 640
           ++S I
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG 193
           + L L +  LT  +   +  L  +  L    N+L    P       L    A  +     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN- 57

Query: 194 PIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSG 241
                + NL  L    L NN L   +    L +   +  L+L  N L  
Sbjct: 58  --VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP 268
           +L +  L  ++   L  L  ++ LDLS N+L    P +L  L  L +L    N+L     
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 269 SVIGNLESLLQLDLSENQL-SGSIPISLGNLSSLTVMSLFSNSLS---SFIPPILGNLKS 324
                     +L L  N+L   +    L +   L +++L  NSL         +   L S
Sbjct: 61  VANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 325 LSAL 328
           +S++
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI 243
           L L H +L   +   L  L  + +  L++N L    P  L  L+ +  L  S N      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LEN 57

Query: 244 PFSLGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQLDLSENQLSG 289
              + NL  L  L L +N L        + +   L+ L+L  N L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 24/106 (22%)

Query: 566 RYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF-------------------- 605
           R L+L++      +   +E+L+ ++ LDLS+N L    P                     
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 606 -QICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
             + N+  L++L LC+N L      +       L  +++  N L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
              E +  N+ +  ++  + ++   L S++++  N +++     +   Y PN+T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 453 NNFYGEISF--------------NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498
           N                        ++   L       +       +             
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS 558
           S      +I              LSL          L  LT+LQ L LS N +     ++
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 559 IGNLLKLRYLNLSN 572
           +  L  L  L L +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 16/208 (7%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSL 160
           F+  +F   +  NL    V   +      L+ +  +   N+ +  V    I +L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220
           + + N+L    P        +  L                +         + +L  + I 
Sbjct: 74  FLNGNKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
            + G +       L       +    L  L+ L  L L  N +S  +P  +  L  L  L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 281 DLSENQLSGSIPISLGNLSSLTVMSLFS 308
            LS+N +S  +  +L  L +L V+ LFS
Sbjct: 184 YLSKNHIS-DLR-ALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 6/221 (2%)

Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
           +P ++   ++  EL     +LR     +     +L  + + +N +   I   + +     
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFY----GEISFNWRNFPKLGTFIVSMNN 478
                +   +        +        L  +N       ++         L     ++N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
            +      +G SF+  +L ++ N I                 +   N L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKI 579
           +    LD+S  ++ S     + NL KLR  +  N + +  +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 9/233 (3%)

Query: 300 SLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           S  V     + ++     +  N   L      + +L  +   +     +L  + +  N  
Sbjct: 9   SNRVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS----GPIPKSL 415
              +  ++                     +         L  +  ++        + K  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVS 475
                L  ++ N N  + +     G       L L++N      +  +         +  
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 476 MNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528
            NN+          +    +LDIS   I       L  L  L     S   L 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 7/225 (3%)

Query: 98  LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL 157
           + E       + + L      +             L+ +++  N +  VI  ++      
Sbjct: 20  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 158 RSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD 217
                     +          +L N   L  +N      P +  + +L    L+     +
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 218 SIPLVLGNLKSIST----LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGN 273
              +   +   +S     L L+KN +      +        +    +N+L      V   
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI 318
               + LD+S  ++       L NL  L   S    +L   +P +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKK-LPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 6/214 (2%)

Query: 122 TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181
            IP  +        L     +L  +          L  +    N +   I  ++      
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 182 NELALCH--NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPL--VLGNLKSISTLDLSKN 237
                    NNL    P +  NL NL    ++N  +     +  +    K +  +  + N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 238 QLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGN 297
             +      +G      IL+L  N +           +         N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH 331
            S   ++ +    + S     L NLK L A   +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 8/77 (10%), Positives = 15/77 (19%)

Query: 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF 626
            L L+ N   +                   N L +              L++    +   
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 627 IPRCFEGMHNLSHIDIS 643
                E +  L      
Sbjct: 217 PSYGLENLKKLRARSTY 233

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 1/133 (0%)

Query: 122 TIPPQVGNLSKLQHLDL-GNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180
                +     L  L +     L  +   ++  L +LR+L    + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS 240
           ++ L L  N L      ++  LS        N L        L   +      + + +L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 241 GSIPFSLGNLSNL 253
                 L ++ N 
Sbjct: 142 CHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 3/113 (2%)

Query: 537 SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-LIHLSKLDLS 595
                  L  + +         +     L  L + N Q +Q + +   + L  L  L + 
Sbjct: 6   CPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 596 YNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
            + L    P        L +LNL  N L     +  +G+     + +S N L 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNPLH 116

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 22/191 (11%)

Query: 393 NLTELVLVNMCENHLSGPIPKS-LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLS 451
            L E +   + + +++  + ++ L  +T+L+  R    ++ G       Y  NLT ++ S
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 70

Query: 452 QNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQL 511
            N                     +       +      +      +  ++    +    L
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 512 AKLFSLNKLILSLNQLSGGMPF--------------ELGSLTELQYLDLSANKLRSWIPK 557
            +L   +  I  ++ LSG                   L +LT L+ LD+S+NK+      
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--IS 188

Query: 558 SIGNLLKLRYL 568
            +  L  L  L
Sbjct: 189 VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 15/202 (7%)

Query: 101 FAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSL 160
           F  ++    +   L    V  T+     +L ++  L      +  +    + +LN L  +
Sbjct: 12  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 67

Query: 161 YFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220
            F  NQL    P        +  L    + L      +               L  + I 
Sbjct: 68  NFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 119

Query: 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
            +       +   L  +  + S   +L  L++L  L   SN ++   P  + NL +L +L
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERL 177

Query: 281 DLSENQLSG-SIPISLGNLSSL 301
           D+S N++S  S+   L NL SL
Sbjct: 178 DISSNKVSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 17/199 (8%)

Query: 225 NLKSISTLDLSKNQLSGSIPFS-LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLS 283
            L       L K  ++ ++  + L  ++ L    L   S+ G     +  L +L Q++ S
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 70

Query: 284 ENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343
            NQL+   P+          ++   + L +          +       +   N  I    
Sbjct: 71  NNQLTDITPLKN--------LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 122

Query: 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMC 403
              +   L  L  +         +  L S+ +L   +N++    P  + NLT L  +++ 
Sbjct: 123 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 180

Query: 404 ENHLSG-PIPKSLRNLTSL 421
            N +S   +   L NL SL
Sbjct: 181 SNKVSDISVLAKLTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 46/353 (13%), Positives = 95/353 (26%), Gaps = 49/353 (13%)

Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG----SIPISLGNLSS 300
           FS+   S L +  + +      + +V+   +S+ ++ LS N +       +  ++ +   
Sbjct: 3   FSIEGKS-LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFY 360
           L +              I   L+ L    L   +L+ V  S        +   +     +
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 361 GFVPEEIGYLKSIFELEL---CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN 417
             +     +   +                +     N   L  +    N L     K    
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 418 ---------LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468
                       + +       +   + E   Y   L  LDL  N F    S       K
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 469 LGTFIVSM----NNISGSIPLEIGESF------KLQVLDISSNHIVGEIPVQLAKLFSLN 518
               +  +      +S      + ++F       LQ L +  N I  +    L  +    
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLR--SWIPKSIGNLLKLRYLN 569
                              + +L +L+L+ N+      +   I  +   R   
Sbjct: 301 -------------------MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 39/310 (12%), Positives = 81/310 (26%), Gaps = 17/310 (5%)

Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS----SFIPPILGNLKSLSALGLHIN 333
           L+LD    +   S+   L    S+  + L  N++      ++   + + K L        
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 334 Q---LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHS 390
               +   IP ++  L    L     +             +      L  +     +   
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDL 450
              L       +        + K  +N   L  +   +N L     + +        L  
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 451 SQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510
           +       I         L             +            L I+         + 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-----GNLLKL 565
           L      + L+ +    +    F       LQ L L  N++     +++       +  L
Sbjct: 250 LN-----DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 566 RYLNLSNNQF 575
            +L L+ N+F
Sbjct: 305 LFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 18/162 (11%), Positives = 40/162 (24%), Gaps = 5/162 (3%)

Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC----NMKSLEKLNL 618
             L+   ++     + +   + +   + ++ LS N +G E    +     + K LE    
Sbjct: 8   KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 619 CHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSC 678
                        E +  L    +   +L     +   F     E           L   
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 679 KAFTSCKQASRKKWVVVMFSSLVMIILLICLIGFKVLFQRRN 720
               +         +      L +          + +   RN
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 37/318 (11%), Positives = 80/318 (25%), Gaps = 19/318 (5%)

Query: 217 DSIPLVLGNLKSISTLDLSKNQLSG----SIPFSLGNLSNLGILYLYSNS---LSGPIPS 269
            S+  VL    S+  + LS N +       +  ++ +  +L I          +   IP 
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
            +  L   L      + +  S            +  L  ++    +      L   +   
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 330 LHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPH 389
           +        +     N   LR +    N        +           L T ++      
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIR 199

Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449
             G    L+        L     +                     + E       L+   
Sbjct: 200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS--- 256

Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-----KLQVLDISSNHI- 503
            ++       +F+      L T  +  N I       +          L  L+++ N   
Sbjct: 257 -ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

Query: 504 -VGEIPVQLAKLFSLNKL 520
              ++  ++ ++FS    
Sbjct: 316 EEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 34/353 (9%), Positives = 92/353 (26%), Gaps = 31/353 (8%)

Query: 324 SLSALGLHINQLNGV----IPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELC 379
           S+    L ++ +       + + +    +++ + L  N         +        +   
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-----IASK 58

Query: 380 TNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF 439
            +            L      ++    +   IP++LR L          + +        
Sbjct: 59  KD------------LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106

Query: 440 GYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS 499
                     LS++     +  +           ++      ++  +   +  L+ +   
Sbjct: 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 166

Query: 500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI 559
            N +      + AK F  ++L+ ++  +  G+  E      L+ L          +    
Sbjct: 167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---YCQELKVLDLQ 223

Query: 560 GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
            N       +           +    L            +             L+ L L 
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--LENIGLQTLRLQ 281

Query: 620 HNNLSGFIPRC-----FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKG 667
           +N +     R       E M +L  ++++ N            ++      +G
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 133 LQHLDLGNNQLTGVI-PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
              L L +N+L  +      G L  L  L    NQL G  P      S I EL L  N +
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 192 YGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLS 251
                     L  L    L +N +   +P    +L S+++L+L+ N  + +   +     
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAE 149

Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
            L    L   +     PS    +  +   DL  ++ 
Sbjct: 150 WLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 7/174 (4%)

Query: 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVL-GNLKSISTLDLSKNQLSGSIPF 245
           C       IP  +    +     LN+N L       L G L  +  L+L +NQL+G  P 
Sbjct: 15  CTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMS 305
           +    S++  L L  N +      +   L  L  L+L +NQ+S  +P S  +L+SLT ++
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359
           L SN  +     +    + L    L+        PS    + ++++  L ++ F
Sbjct: 133 LASNPFNC-NCHLAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 339 IPSSIGNLSNLRLLYLYNNGFYGFVPEEI-GYLKSIFELELCTNRLRGGIPHSIGNLTEL 397
           IP  I    +   L L +N       + + G L  + +LEL  N+L G  P++    + +
Sbjct: 23  IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 398 VLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG 457
             + + EN +     K    L  L+ +    N +S  +  +F +  +LT L+L+ N F  
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
                W     L    ++        P ++ +   +Q+ D+  + 
Sbjct: 141 NCHLAW-FAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 5/156 (3%)

Query: 443 PNLTFLDLSQNNFYGEISFNWR-NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
            + T L L+ N      S       P L    +  N ++G  P     +  +Q L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
            I          L  L  L L  NQ+S  MP     L  L  L+  A+   +        
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWF 147

Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
              LR  +L+        P    K+  +   DL ++
Sbjct: 148 AEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHS 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLS 179
                     L +L+ L+L +NQ++ V+P    HLN L SL    N  +           
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAE 149

Query: 180 LINELALCHNNLYGPIPPSLGNLS 203
            + + +L         P  + ++ 
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQ 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	725
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.7e-41  Score=347.28  Aligned_cols=292  Identities=29%  Similarity=0.493  Sum_probs=217.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC--ccCcceeCC---CCCEEEEEcCCCCCccc
Q 041178           23 SYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPC--AWVGISCNQ---AERIISINLSSMGLNGT   97 (725)
Q Consensus        23 ~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C--~w~gv~C~~---~~~v~~l~l~~~~l~~~   97 (725)
                      .|.++||+||++||+++.++  ..+++|.   .+           +|||  .|.||+|+.   .+||++|+|+++++.|.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~--~~l~sW~---~~-----------~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP--TTLSSWL---PT-----------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC--GGGTTCC---TT-----------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCC--CcCCCCC---CC-----------CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCC
Confidence            37899999999999999765  4688995   34           6999  499999985   34899999999988874


Q ss_pred             --cCCcccCCCCCCcEEECCC-CCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcc
Q 041178           98 --LQEFAFSSFPHLVHLNLSF-NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQE  174 (725)
Q Consensus        98 --~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  174 (725)
                        +| .+++++++|++|+|++ |++.|.+|++|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.+.+|..
T Consensus        66 ~~lp-~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          66 YPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCCC-hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence              55 5777888888888875 6777778877888888888888888887777777777778888888877777777777


Q ss_pred             ccCCCCCCEEEcCCCcCCCCCCCCcCCCCCC-cEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041178          175 IGQLSLINELALCHNNLYGPIPPSLGNLSNL-ANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL  253 (725)
Q Consensus       175 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  253 (725)
                      ++++++|+++++++|.+.+.+|+.+..+.++ +.+++++|.+++..|..+..+..+ .++++.+...+.+|..+..++++
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCC
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            7777777777777777777777777666665 667777777777777666655443 57777777777777777777777


Q ss_pred             CceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccc
Q 041178          254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN  333 (725)
Q Consensus       254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  333 (725)
                      +.+++++|.+.+.+| .++.+++|++|++++|+++|.+|.+++++++|++|++++|+++|.+|. ++++++|+.+++++|
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            777777777765544 466667777777777777777777777777777777777777766663 456666777777666


Q ss_pred             c
Q 041178          334 Q  334 (725)
Q Consensus       334 ~  334 (725)
                      +
T Consensus       302 ~  302 (313)
T d1ogqa_         302 K  302 (313)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.3e-31  Score=275.32  Aligned_cols=239  Identities=28%  Similarity=0.454  Sum_probs=168.1

Q ss_pred             cccccCCCCCCEEeCcC-CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcC
Q 041178          436 YEAFGYHPNLTFLDLSQ-NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL  514 (725)
Q Consensus       436 ~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  514 (725)
                      |..++++++|++|++++ |+++|.+|..++++++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.+|..+.++
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            34444445555555543 44555555555555555555555555555555555566666666666666666666666666


Q ss_pred             CCCCeEeccCceecCCCCccccCcccc-ccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccc
Q 041178          515 FSLNKLILSLNQLSGGMPFELGSLTEL-QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD  593 (725)
Q Consensus       515 ~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  593 (725)
                      +.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++++...+.+|..++.+++++.++
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             cccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            667777777777766666666666554 66777777777777777766654 3688888888888888888888888888


Q ss_pred             ccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCcCce---eccCCCCCCC
Q 041178          594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA---RMEGNKGLCG  670 (725)
Q Consensus       594 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~  670 (725)
                      +++|.+.+.+| .++.+++|+.|+|++|+++|.+|..|.++++|++||+++|+++|.+|....++.+   .+.||+.+||
T Consensus       228 ~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence            88888877665 5777888888888888888888888888888888888888888888876555544   7888999999


Q ss_pred             CCCCCCCC
Q 041178          671 NIKGLPSC  678 (725)
Q Consensus       671 ~~~~~~~c  678 (725)
                      .|  .|.|
T Consensus       307 ~p--lp~c  312 (313)
T d1ogqa_         307 SP--LPAC  312 (313)
T ss_dssp             TT--SSCC
T ss_pred             CC--CCCC
Confidence            87  4666

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.3e-27  Score=249.76  Aligned_cols=343  Identities=26%  Similarity=0.317  Sum_probs=208.1

Q ss_pred             cCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccc
Q 041178          248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA  327 (725)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  327 (725)
                      ..+.+|++|+++++.++..  ..+..+++|++|++++|++++..  .++++++|++|++++|.+.+..  .++.+++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccc
Confidence            3455666666666666532  23555666666666666665432  2555666666666666655432  2445555555


Q ss_pred             cccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcC
Q 041178          328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL  407 (725)
Q Consensus       328 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  407 (725)
                      ++++++.+++..+  ......+.......|.+...                        .+.................  
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~------------------------~~~~~~~~~~~~~~~~~~~--  166 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI------------------------SALSGLTSLQQLSFGNQVT--  166 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC------------------------GGGTTCTTCSEEEEEESCC--
T ss_pred             ccccccccccccc--cccccccccccccccccccc------------------------ccccccccccccccccccc--
Confidence            5555555543221  22223344444444433222                        1111111111111111110  


Q ss_pred             CCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccc
Q 041178          408 SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI  487 (725)
Q Consensus       408 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~  487 (725)
                         ....+...+.........|...  ....+..+++++.+++++|.+++..+  +..+++|+.|++++|.++..  ..+
T Consensus       167 ---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l  237 (384)
T d2omza2         167 ---DLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL  237 (384)
T ss_dssp             ---CCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ---hhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chh
Confidence               1111222233333333333222  22334455666666666666665433  34456677777777766542  356


Q ss_pred             cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178          488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY  567 (725)
Q Consensus       488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  567 (725)
                      ..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..++.++.+++++|.+.+.  ..+..+++++.
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCe
Confidence            677788888888888776543  677888888888888887543  366788888889988888763  35788889999


Q ss_pred             EeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCC
Q 041178          568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN  645 (725)
Q Consensus       568 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  645 (725)
                      |++++|++++..  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++.+|  +.++++|++|++++|
T Consensus       312 L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         312 LTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999987653  37888999999999998864 44 58889999999999999987655  788999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=4.6e-27  Score=248.66  Aligned_cols=356  Identities=25%  Similarity=0.320  Sum_probs=228.7

Q ss_pred             EccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccc
Q 041178          209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      .++.+.+++.+.  ...+.+|++|+++++.++. + +.++.+++|++|++++|++++..  .++++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc
Confidence            455555555443  3456789999999999984 3 46889999999999999998653  3999999999999999998


Q ss_pred             cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCccccc
Q 041178          289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG  368 (725)
Q Consensus       289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  368 (725)
                      +..|  ++.+++|+.++++++.+++..+  ......+.......|.+....+.................     ....+.
T Consensus       102 ~i~~--l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  172 (384)
T d2omza2         102 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLA  172 (384)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGT
T ss_pred             cccc--cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhhhc
Confidence            6443  7899999999999999887543  334456666666666665332222221111111111111     112223


Q ss_pred             CCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEE
Q 041178          369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL  448 (725)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  448 (725)
                      ..+.........|...  ....+..+++++.+++++|.+++..|  +..+                        ++|++|
T Consensus       173 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~------------------------~~L~~L  224 (384)
T d2omza2         173 NLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGIL------------------------TNLDEL  224 (384)
T ss_dssp             TCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGC------------------------TTCCEE
T ss_pred             cccccccccccccccc--cccccccccccceeeccCCccCCCCc--cccc------------------------CCCCEE
Confidence            3333344444433322  22233445555555555555554322  2233                        445555


Q ss_pred             eCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec
Q 041178          449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS  528 (725)
Q Consensus       449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  528 (725)
                      ++++|.++..  ..+..+++|+.+++++|.+++..  .+..+++|++|++++|++.+..+  +..++.++.++++.|.++
T Consensus       225 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         225 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE  298 (384)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred             ECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--cccccccccccccccccc
Confidence            5555544431  23444555555555555555432  24556667777777776664432  566777777888877777


Q ss_pred             CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCccccc
Q 041178          529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC  608 (725)
Q Consensus       529 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  608 (725)
                      +  ...+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++.+|  +.
T Consensus       299 ~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~  370 (384)
T d2omza2         299 D--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA  370 (384)
T ss_dssp             C--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT
T ss_pred             c--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc
Confidence            4  234667788888888888887743  37788888888888888864 44 58888888888888888877655  78


Q ss_pred             CCCCCCEEeCCCC
Q 041178          609 NMKSLEKLNLCHN  621 (725)
Q Consensus       609 ~l~~L~~L~Ls~N  621 (725)
                      ++++|+.|+|++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            8889999998887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.3e-24  Score=218.71  Aligned_cols=244  Identities=25%  Similarity=0.330  Sum_probs=141.9

Q ss_pred             CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCcc
Q 041178           71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE  150 (725)
Q Consensus        71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  150 (725)
                      |.|++|.|+.           .+++ .+| ..+  .+++++|+|++|.++...+.+|.++++|++|++++|.+....|..
T Consensus        10 c~~~~~~C~~-----------~~L~-~lP-~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSD-----------LGLE-KVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTT-----------SCCC-SCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecC-----------CCCC-ccC-CCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence            7888888863           2232 223 122  256788888888776655556777888888888888777666777


Q ss_pred             CcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCC--ccCccccCCCCC
Q 041178          151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLF--DSIPLVLGNLKS  228 (725)
Q Consensus       151 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~  228 (725)
                      |.++++|++|++++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....++.++...+...  ...+..+..+++
T Consensus        75 f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            777778888888777776 344332  346677777777666544444555566666666655422  222344555566


Q ss_pred             CCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccC
Q 041178          229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS  308 (725)
Q Consensus       229 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  308 (725)
                      |+++++++|.++ .+|..+  +++|+.|++++|...+..+..+.+++.+++|++++|.+++..+..+.++++|++|++++
T Consensus       152 L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            666666666554 223222  34555555555555555555555555555555555555544444555555555555555


Q ss_pred             CcCcccCcccccCCCccccccccccccc
Q 041178          309 NSLSSFIPPILGNLKSLSALGLHINQLN  336 (725)
Q Consensus       309 n~l~~~~~~~l~~l~~L~~L~l~~n~l~  336 (725)
                      |+++. +|.++..+++|++|++++|+++
T Consensus       229 N~L~~-lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         229 NKLVK-VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             SCCSS-CCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccc-cccccccccCCCEEECCCCccC
Confidence            55543 2444444555555555555444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1e-23  Score=214.99  Aligned_cols=266  Identities=23%  Similarity=0.301  Sum_probs=189.3

Q ss_pred             CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178          108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC  187 (725)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (725)
                      +.+.+|-++++++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566777777765 4565553  678899999998886555678888999999999998887778888888899999998


Q ss_pred             CCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCc--ccCCccccCCCCCCceeeccccccc
Q 041178          188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS--GSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      +|+++. +|..+  ...++.|++.+|.+.+..+..+.....++.++...+...  ...+..+..+++|+++++++|.+..
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            888874 44433  357888888888887766666777777888887776543  2344556777778888887777763


Q ss_pred             cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcC
Q 041178          266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGN  345 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  345 (725)
                       +|..+  +++|++|++++|..++..+..+.+++.+++|++++|.+++..+.++.++++|++|++++|+++ .+|.++..
T Consensus       165 -l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         165 -IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             -CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             -cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence             34332  567777888777777777777777777777777777777777777777777777777777776 45667777


Q ss_pred             CCCCCEEEccCCcCccCCcccc------cCCCCCCEEECcCccc
Q 041178          346 LSNLRLLYLYNNGFYGFVPEEI------GYLKSIFELELCTNRL  383 (725)
Q Consensus       346 l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~l~~n~l  383 (725)
                      +++|++|++++|+++..-...|      ....+|+.|++++|++
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            7777777777777765432222      2234455555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-24  Score=213.97  Aligned_cols=207  Identities=23%  Similarity=0.196  Sum_probs=160.9

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEcc-CCcCCCCCCccccCCCCCCEEE
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFD-VNQLHGPIPQEIGQLSLINELA  185 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~  185 (725)
                      +.+++|+|++|.+++..+.+|.++++|++|++++|.+.+..+..+.++..++.++.. .+.++...|..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            567888998888877666778888888888888888887777778888888888765 4456655577788888888888


Q ss_pred             cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178          186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG  265 (725)
Q Consensus       186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  265 (725)
                      +++|.+....+..+..+++|+.+++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+++++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            88888776666677777888888888888876666777777888888888888877667777777777878777777777


Q ss_pred             cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178          266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS  313 (725)
Q Consensus       266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  313 (725)
                      ..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            777777777777777777777776666667777777777777777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.1e-24  Score=212.87  Aligned_cols=209  Identities=21%  Similarity=0.168  Sum_probs=148.6

Q ss_pred             CCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEcc-CCcccccCchhhhcCCCCCeEec
Q 041178          444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS-SNHIVGEIPVQLAKLFSLNKLIL  522 (725)
Q Consensus       444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~L~~L~L  522 (725)
                      ++++|++++|++++..+..|.++++|+.|++++|++.+..+..+..+..++.++.. .+.+....+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34555555555554444445555555555555555555555555555556665543 34445555666777777777777


Q ss_pred             cCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc
Q 041178          523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE  602 (725)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  602 (725)
                      ++|.+.+..+..+...++|+.+++++|.++++.+..|..+++|++|++++|++.+..+..|.++++|+++++++|.+++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            77777766666677777778888888888776667777778888888888888777777788888888888888888877


Q ss_pred             CcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178          603 MPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP  652 (725)
Q Consensus       603 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  652 (725)
                      .|..|.++++|++||+++|++.+..|..|..+++|++|++++|++.+..+
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            78888888888888888888888777888888888888888888887655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=192.71  Aligned_cols=197  Identities=25%  Similarity=0.247  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEcc
Q 041178           84 IISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFD  163 (725)
Q Consensus        84 v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  163 (725)
                      ..++++++.+++. +| ..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|.++. +| .++.+++|++|+++
T Consensus        12 ~~~v~C~~~~L~~-iP-~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          12 HLEVNCDKRNLTA-LP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             CCEEECTTSCCSS-CC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CeEEEccCCCCCe-eC-cCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            3445555655553 33 1121  355666666665555444455555566666666555552 22 23445555555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccC
Q 041178          164 VNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI  243 (725)
Q Consensus       164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  243 (725)
                      +|++++ .+..+.++++|++|++++|.+.                        +..+..+..+.++++|++++|.++...
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~------------------------~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLT------------------------SLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCC------------------------CCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             cccccc-cccccccccccccccccccccc------------------------eeeccccccccccccccccccccceec
Confidence            555442 2334444444444444444444                        444444444555555555555555444


Q ss_pred             CccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCc
Q 041178          244 PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS  312 (725)
Q Consensus       244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (725)
                      +..+..+++++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            444455555555555555555555555566666666666666665 55666666666666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-21  Score=191.00  Aligned_cols=178  Identities=26%  Similarity=0.237  Sum_probs=150.6

Q ss_pred             CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178           82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY  161 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  161 (725)
                      ..++.|+|+++.+.+..+ .+|..+++|++|+|++|.++. +| .++.+++|++|++++|++++ .+..+.++++|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCH-HHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccc
Confidence            468999999999986444 689999999999999999874 44 46789999999999999984 577899999999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc
Q 041178          162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG  241 (725)
Q Consensus       162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  241 (725)
                      +++|.+.+..+..+..+.++++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+++ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            9999999888888889999999999999998777777788888999999998888877777888888888888888887 


Q ss_pred             cCCccccCCCCCCceeecccccc
Q 041178          242 SIPFSLGNLSNLGILYLYSNSLS  264 (725)
Q Consensus       242 ~~~~~l~~l~~L~~L~L~~n~l~  264 (725)
                      .+|+.+..+++|+.|+|++|.+.
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccChhHCCCCCCCEEEecCCCCC
Confidence            67777777777777777776553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=2.2e-16  Score=163.41  Aligned_cols=95  Identities=28%  Similarity=0.312  Sum_probs=55.1

Q ss_pred             CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178          108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC  187 (725)
Q Consensus       108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (725)
                      ++++|||+++.++ .+|+.   .++|++|++++|+++ .+|+.   +.+|+.|++++|.++ .++..   -+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5777777777765 35542   456777777777777 55644   346677777776665 22211   1246666666


Q ss_pred             CCcCCCCCCCCcCCCCCCcEEEccCCcCC
Q 041178          188 HNNLYGPIPPSLGNLSNLANFYLNNNLLF  216 (725)
Q Consensus       188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  216 (725)
                      +|.+. .+|. ++.+++|++|+++++.+.
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-hhhhccceeecccccccc
Confidence            66655 3332 455566666666655543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=3.3e-16  Score=162.07  Aligned_cols=200  Identities=26%  Similarity=0.279  Sum_probs=124.4

Q ss_pred             CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178           82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY  161 (725)
Q Consensus        82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  161 (725)
                      .++++++|++++++. +|+    ..++|++|++++|.++ .+|..   +.+|+.|++++|.++ .++. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~-lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCC-CCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            357788999888863 452    2578999999999886 56654   467889999998887 3332 1  24689999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc
Q 041178          162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG  241 (725)
Q Consensus       162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  241 (725)
                      +++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+...  .+..+..++.++.+++++|....
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999887 4554 67889999999998887643 22   2356677777665542  23456677788888888777653


Q ss_pred             cCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCc
Q 041178          242 SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS  312 (725)
Q Consensus       242 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  312 (725)
                      . +..   ....+.+....+.+. .++ .+..++.|+.+++++|... .++.   ...++..+.+..+.+.
T Consensus       177 ~-~~~---~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         177 L-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT  237 (353)
T ss_dssp             C-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS
T ss_pred             c-ccc---ccccccccccccccc-ccc-ccccccccccccccccccc-cccc---cccccccccccccccc
Confidence            2 211   122233444333332 222 2455666666666666554 2222   2234555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-20  Score=200.52  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             CCcEEEccCCcCCccC-ccccCCCCCCCEEEccCCcCcc----cCCccccCCCCCCceeecccccccc----CCcccc-C
Q 041178          204 NLANFYLNNNLLFDSI-PLVLGNLKSISTLDLSKNQLSG----SIPFSLGNLSNLGILYLYSNSLSGP----IPSVIG-N  273 (725)
Q Consensus       204 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~  273 (725)
                      +|++||+++|++++.. ...+..++++++|+|++|.++.    .+...+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5677777777775532 2334456777777777777652    2233455666677777776666421    111121 2


Q ss_pred             CCCCCEEEccCCccccc----cCCCCCCCCCccEEEccCCcCc
Q 041178          274 LESLLQLDLSENQLSGS----IPISLGNLSSLTVMSLFSNSLS  312 (725)
Q Consensus       274 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  312 (725)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23566666666665432    2333445556666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8.2e-18  Score=162.61  Aligned_cols=171  Identities=28%  Similarity=0.368  Sum_probs=83.1

Q ss_pred             CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178          104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE  183 (725)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  183 (725)
                      +.+.+|++|++.+|.+.. + +.+.++++|++|++++|.+++..|  +.++++|+++++++|.++. + ..+.++++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccc
Confidence            445566666666666543 2 235666666666666666654322  5566666666666665542 2 23555556666


Q ss_pred             EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      ++++++...+.  ..+...+.++.+.++.+.+....  .+..+++|++|++++|.+++.  ..++++++|++|++++|++
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            66655554432  22344455555555554443221  133444555555555544322  1234444444444444444


Q ss_pred             cccCCccccCCCCCCEEEccCCccc
Q 041178          264 SGPIPSVIGNLESLLQLDLSENQLS  288 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L~L~~n~l~  288 (725)
                      ++. + .++++++|++|++++|+++
T Consensus       186 ~~l-~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         186 SDI-S-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CCC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             CCC-h-hhcCCCCCCEEECcCCcCC
Confidence            321 1 1344444444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.3e-17  Score=159.44  Aligned_cols=204  Identities=26%  Similarity=0.336  Sum_probs=110.9

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      ..++++.+.+++.+  .+..+.+|++|++.+|.++. ++ .+..+++|++|++++|.+++..|  +.++++|+++++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            33455555555543  34556777777777777773 33 46777777777777777764432  667777777777776


Q ss_pred             cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCc
Q 041178          190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS  269 (725)
Q Consensus       190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  269 (725)
                      .++. + +.+..+++|++++++++...+.  ..+...+.++.+.++.+.+...  ..+...++|+.|++++|.+.+.  .
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~  167 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--T  167 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             cccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--h
Confidence            6653 2 2455666666666666654332  2244455556666555554422  1234444555555555444322  1


Q ss_pred             cccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCC
Q 041178          270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNL  349 (725)
Q Consensus       270 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  349 (725)
                      .+++                        +++|++|++++|++++. + .++.+++|++|++++|++++. + .+.++++|
T Consensus       168 ~l~~------------------------l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L  219 (227)
T d1h6ua2         168 PLAN------------------------LSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNL  219 (227)
T ss_dssp             GGTT------------------------CTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTC
T ss_pred             hhcc------------------------cccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCC
Confidence            2444                        44455555555544432 1 244455555555555555432 2 24555555


Q ss_pred             CEEEcc
Q 041178          350 RLLYLY  355 (725)
Q Consensus       350 ~~L~L~  355 (725)
                      +.|+++
T Consensus       220 ~~L~ls  225 (227)
T d1h6ua2         220 FIVTLT  225 (227)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=160.58  Aligned_cols=201  Identities=16%  Similarity=0.110  Sum_probs=104.3

Q ss_pred             CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCC-ccCcCCCCCCEEEccC-CcCCCCCCccccCCCCCCEE
Q 041178          107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIP-PEIGHLNQLRSLYFDV-NQLHGPIPQEIGQLSLINEL  184 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L  184 (725)
                      +++++|++++|.+....+.+|.++++|++|++++|.+...+| ..|.++++++++++.. |.+....+..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            467777777777765555567777777777777776655433 3566677777776653 44555555556666666666


Q ss_pred             EcCCCcCCCCCCC-CcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178          185 ALCHNNLYGPIPP-SLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL  263 (725)
Q Consensus       185 ~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  263 (725)
                      ++++|.+....+. .+..+..+..+...++.+....+..+..++                       ..++.+++.+|.+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-----------------------~~l~~L~l~~n~l  165 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-----------------------FESVILWLNKNGI  165 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB-----------------------SSCEEEECCSSCC
T ss_pred             ccchhhhccccccccccccccccccccccccccccccccccccc-----------------------ccceeeecccccc
Confidence            6666665532211 122233333333344333333333333322                       1344444444444


Q ss_pred             cccCCccccCCCCCCEE-EccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccc
Q 041178          264 SGPIPSVIGNLESLLQL-DLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLH  331 (725)
Q Consensus       264 ~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  331 (725)
                      +...+. ..+..+++++ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       166 ~~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 QEIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            432222 2222333333 344455553333345556666666666666665444455666666665553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.6e-20  Score=196.85  Aligned_cols=378  Identities=17%  Similarity=0.078  Sum_probs=176.7

Q ss_pred             CCCCceeeccccccccC-CccccCCCCCCEEEccCCcccc----ccCCCCCCCCCccEEEccCCcCcccC----ccccc-
Q 041178          251 SNLGILYLYSNSLSGPI-PSVIGNLESLLQLDLSENQLSG----SIPISLGNLSSLTVMSLFSNSLSSFI----PPILG-  320 (725)
Q Consensus       251 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~----~~~l~-  320 (725)
                      ++|++|++++|++++.. ...+..+++++.|+|++|.++.    .++..+..+++|++|++++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35788888888887532 2334556778888888887753    22333456677788888777765321    11121 


Q ss_pred             CCCccccccccccccccc----CCccCcCCCCCCEEEccCCcCccCCcccc----c-CCCCCCEEECcCcccccc----c
Q 041178          321 NLKSLSALGLHINQLNGV----IPSSIGNLSNLRLLYLYNNGFYGFVPEEI----G-YLKSIFELELCTNRLRGG----I  387 (725)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~l~~~----~  387 (725)
                      ...+|++|++++|+++..    ++..+..+++|++|++++|.+.......+    . ..................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            123566666666666532    23345556666666666665543211111    0 111222222222221110    0


Q ss_pred             cccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccc-cCCCCCCEEeCcCCcccccc----Ccc
Q 041178          388 PHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYHPNLTFLDLSQNNFYGEI----SFN  462 (725)
Q Consensus       388 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~----~~~  462 (725)
                      ...+.....++.++++.+......-.                    .....+ ........+++..+.+....    ...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~--------------------~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVR--------------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHH--------------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccchhhhccccc
Confidence            01122233444444444332210000                    000000 01122334444443332110    011


Q ss_pred             ccCCCCCcEEECCCCcccc-----cCCccccccCCCcEEEccCCccccc----CchhhhcCCCCCeEeccCceecCCCCc
Q 041178          463 WRNFPKLGTFIVSMNNISG-----SIPLEIGESFKLQVLDISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGGMPF  533 (725)
Q Consensus       463 ~~~~~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~  533 (725)
                      +...+.++.+.+..|.+..     ..+........++.+++++|.+...    ....+...+.++.+++++|.+++....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2233445555555544321     1112223344556666666555322    122334455566666666655432111


Q ss_pred             cc-----cCcccccccccccccccccccc----ccccCCCCCEEeCCCCcCccc----Chhhhh-ccccccccccccccc
Q 041178          534 EL-----GSLTELQYLDLSANKLRSWIPK----SIGNLLKLRYLNLSNNQFIQK----IPIEVE-KLIHLSKLDLSYNFL  599 (725)
Q Consensus       534 ~~-----~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l  599 (725)
                      .+     .....|+.+++++|.++.....    .+....+|++|+|++|++.+.    ++..+. ..+.|++|+|++|.+
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence            11     1234566666666665543222    233445677777777766432    222232 245567777777776


Q ss_pred             Ccc----CcccccCCCCCCEEeCCCCccccccCc----ccc-CCCCCCEEeCcCCCcc
Q 041178          600 GKE----MPFQICNMKSLEKLNLCHNNLSGFIPR----CFE-GMHNLSHIDISYNELQ  648 (725)
Q Consensus       600 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~-~l~~L~~L~ls~N~l~  648 (725)
                      +..    ++..+..+++|++|||++|+++.....    .+. +...|++|++++|.+.
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            542    334455566777777777776543222    222 2335777777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.4e-17  Score=158.02  Aligned_cols=215  Identities=15%  Similarity=0.155  Sum_probs=103.0

Q ss_pred             CEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCC-CCCcCCCCCCcEEEccC
Q 041178          134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI-PPSLGNLSNLANFYLNN  212 (725)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~  212 (725)
                      ++++.++..++ .+|+.+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34444444444 3443331  34555555555554333334555555555555555544332 22345555555555443


Q ss_pred             -CcCCccCccccCCCCCCCEEEccCCcCcccCCc-cccCCCCCCceeeccccccccCCccccCCC-CCCEEEccCCcccc
Q 041178          213 -NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLE-SLLQLDLSENQLSG  289 (725)
Q Consensus       213 -n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~  289 (725)
                       |.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             344444455556666666666666655432111 122333344444444445444444444443 56667777776664


Q ss_pred             ccCCCCCCCCCccEE-EccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEE
Q 041178          290 SIPISLGNLSSLTVM-SLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLL  352 (725)
Q Consensus       290 ~~p~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  352 (725)
                       ++......++++++ .+++|+++...+..|.++++|++|++++|+++...+..|.++++|+.+
T Consensus       168 -i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         168 -IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             -ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             -cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence             33333334444443 345555555444445555666666666665553323334444433333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.4e-17  Score=153.87  Aligned_cols=164  Identities=23%  Similarity=0.335  Sum_probs=116.6

Q ss_pred             CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccc
Q 041178          467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL  546 (725)
Q Consensus       467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  546 (725)
                      .+++.|++++|.+....  .+..+++|++|++++|++++..+  +..+++|++|++++|++++ +| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-ccccccccccccc
Confidence            34555555555554321  25566677777777777765332  5667778888888777774 33 4677788888888


Q ss_pred             cccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccc
Q 041178          547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF  626 (725)
Q Consensus       547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  626 (725)
                      ++|.+...  ..+..+++++.+++++|.+++  +..+..+++|+++++++|++++. + .+.++++|+.|++++|+++. 
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-  192 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-  192 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-
T ss_pred             cccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-
Confidence            88877652  357788888888888888764  23567788888888888888653 3 37888999999999998874 


Q ss_pred             cCccccCCCCCCEEeCcC
Q 041178          627 IPRCFEGMHNLSHIDISY  644 (725)
Q Consensus       627 ~p~~l~~l~~L~~L~ls~  644 (725)
                      +| .|.++++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            44 588889999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.2e-17  Score=154.85  Aligned_cols=128  Identities=22%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CEEeCcCCccccccCccccCCCCCcEEECCCCcccccC-CccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccC
Q 041178          446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI-PLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSL  524 (725)
Q Consensus       446 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~  524 (725)
                      +.++.++++++ .+|..+  .+.+++|++++|++++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45666666655 234332  234555555555554422 33344555555555555555555555555555555555555


Q ss_pred             ceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc
Q 041178          525 NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI  576 (725)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  576 (725)
                      |++++..+..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|++.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555444444555555555555555555544444555555555555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.5e-16  Score=151.18  Aligned_cols=163  Identities=27%  Similarity=0.367  Sum_probs=71.3

Q ss_pred             CCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEE
Q 041178          130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFY  209 (725)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  209 (725)
                      +.+|++|++++|.++.. + .+..+++|++|++++|.+++. + .++.+++|++|++++|++++ +| .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccc
Confidence            34455555555554422 1 244455555555555554432 1 23444555555555554442 22 244444555555


Q ss_pred             ccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccc
Q 041178          210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG  289 (725)
Q Consensus       210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  289 (725)
                      +++|.+.. + ..+..++.++.+++++|.+++  +..+..+++|+++++++|.+++. + .++++++|++|++++|+++.
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            54444322 1 124444455555555544432  12233444444444444444422 1 14444444444444444432


Q ss_pred             ccCCCCCCCCCccEEEc
Q 041178          290 SIPISLGNLSSLTVMSL  306 (725)
Q Consensus       290 ~~p~~l~~l~~L~~L~L  306 (725)
                       +| .+.++++|++|++
T Consensus       193 -l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             -CG-GGTTCTTCSEEEE
T ss_pred             -Ch-hhcCCCCCCEEEc
Confidence             22 2444444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.2e-16  Score=149.78  Aligned_cols=109  Identities=25%  Similarity=0.303  Sum_probs=64.7

Q ss_pred             CCCcEEECCCCCCCccC-chhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178          107 PHLVHLNLSFNIVFGTI-PPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA  185 (725)
Q Consensus       107 ~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  185 (725)
                      +++++|+|++|.+++.+ +..|.++++|++|++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            46666666666665533 34456666666666666666666666666666666666666666655555555566666666


Q ss_pred             cCCCcCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178          186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLL  215 (725)
Q Consensus       186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  215 (725)
                      |++|.+++..|++|..+++|++|+|++|.+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCccccccCHHHhcCCccccccccccccc
Confidence            666655554455555555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.2e-16  Score=146.15  Aligned_cols=148  Identities=28%  Similarity=0.398  Sum_probs=76.3

Q ss_pred             CCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041178          105 SFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL  184 (725)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  184 (725)
                      .++++++|+++++.+...  +.+..+++|++|++++|++++..  .++++++|++|++++|.+.. ++ .++++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccc
Confidence            345666666666655432  23555666666666666665432  25566666666666665542 22 25555666666


Q ss_pred             EcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178          185 ALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS  264 (725)
Q Consensus       185 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  264 (725)
                      ++++|.+...  +.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++.  ..++++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            6655554432  234455555555555555432 22 344555555555555555432  12444444444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.5e-16  Score=144.67  Aligned_cols=176  Identities=30%  Similarity=0.408  Sum_probs=89.3

Q ss_pred             EECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcC
Q 041178          112 LNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL  191 (725)
Q Consensus       112 L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  191 (725)
                      ..++.+.+++.++  ...++++++|++++|.++. + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3444555544332  2345666777777776663 2 235566666666666666654322  55666666666666655


Q ss_pred             CCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccc
Q 041178          192 YGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI  271 (725)
Q Consensus       192 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  271 (725)
                      ... + .+.++++|+.|+++++.....  ..+..+++|+.|++++|++.. + +.                        +
T Consensus        97 ~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~------------------------l  146 (199)
T d2omxa2          97 ADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SA------------------------L  146 (199)
T ss_dssp             CCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GG------------------------G
T ss_pred             ccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cc------------------------c
Confidence            422 2 245555555555555544332  124445555555555554432 1 22                        4


Q ss_pred             cCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccc
Q 041178          272 GNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA  327 (725)
Q Consensus       272 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  327 (725)
                      ..+++|++|++.+|++++..  .++++++|++|++++|++++.  +.++.+++|++
T Consensus       147 ~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~  198 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLES  198 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             cccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCc
Confidence            44455555555555554321  244555555555555555542  13445555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=149.76  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             cccccccccccc--cccc-cccccccCCCCCEEeCCCCc-CcccChhhhhccccccccccccc-ccCccCcccccCCCCC
Q 041178          539 TELQYLDLSANK--LRSW-IPKSIGNLLKLRYLNLSNNQ-FIQKIPIEVEKLIHLSKLDLSYN-FLGKEMPFQICNMKSL  613 (725)
Q Consensus       539 ~~L~~L~Ls~n~--l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L  613 (725)
                      ++|+.|+++++.  ++.. +...+.++++|++|++++|. +++.....+.++++|++|+|++| .+++.....++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            455555555432  2211 22233456677777777653 55555666667777777777774 4555555566777777


Q ss_pred             CEEeCCCCccccccCccccCCCCCCEEeCcCCCcccc
Q 041178          614 EKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP  650 (725)
Q Consensus       614 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  650 (725)
                      ++|+++++--.+.++.....++.|   ++..+++++.
T Consensus       228 ~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         228 KTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             CEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCT
T ss_pred             CEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCC
Confidence            777777762222222222334443   3455566544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-15  Score=147.87  Aligned_cols=179  Identities=17%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             CCCcEEEcCCCcCCCC-CCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCc-ccccc-CccccCCCCCcE
Q 041178          395 TELVLVNMCENHLSGP-IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN-FYGEI-SFNWRNFPKLGT  471 (725)
Q Consensus       395 ~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~~-~~~~~~~~~L~~  471 (725)
                      .+|++|+++++.++.. ++..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++... ......+++|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3455555555544322 22234445555555555555554444455555555555555532 22110 111223444555


Q ss_pred             EECCCCc-cccc-CCcccc-ccCCCcEEEccCCc--cccc-CchhhhcCCCCCeEeccCc-eecCCCCccccCccccccc
Q 041178          472 FIVSMNN-ISGS-IPLEIG-ESFKLQVLDISSNH--IVGE-IPVQLAKLFSLNKLILSLN-QLSGGMPFELGSLTELQYL  544 (725)
Q Consensus       472 L~l~~n~-~~~~-~p~~~~-~l~~L~~L~Ls~n~--l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  544 (725)
                      |++++|. ++.. +...+. .++.|+.|+++++.  ++.. +.....++++|++|++++| .+++.....+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            5544432 2110 111111 12345555554431  2111 1222233444555555443 2333333344444444444


Q ss_pred             ccccc-ccccccccccccCCCCCEEeCCCC
Q 041178          545 DLSAN-KLRSWIPKSIGNLLKLRYLNLSNN  573 (725)
Q Consensus       545 ~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n  573 (725)
                      ++++| .+++.....++++++|++|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            44443 233323333444444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=130.10  Aligned_cols=126  Identities=19%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             cCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccc
Q 041178          513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL  592 (725)
Q Consensus       513 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  592 (725)
                      ++..+++|+|++|+++. ++..+..+++|+.|++++|.++..  +.+..+++|++|++++|+++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            34455555555555552 344445556666666666666553  245666666667777666665555555666677777


Q ss_pred             cccccccCccCc-ccccCCCCCCEEeCCCCcccccc---CccccCCCCCCEEe
Q 041178          593 DLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLSGFI---PRCFEGMHNLSHID  641 (725)
Q Consensus       593 ~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~  641 (725)
                      ++++|++..... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777776643211 34666777777777777775322   12456677777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=9.4e-15  Score=150.44  Aligned_cols=240  Identities=17%  Similarity=0.192  Sum_probs=123.3

Q ss_pred             ccccCCCCCcEEEcCCCcCCCC----CCccccCCCCCcEEECcCcccccc----------ccccccCCCCCCEEeCcCCc
Q 041178          389 HSIGNLTELVLVNMCENHLSGP----IPKSLRNLTSLERVRFNQNNLSGK----------VYEAFGYHPNLTFLDLSQNN  454 (725)
Q Consensus       389 ~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~~L~~L~ls~n~  454 (725)
                      ..+.....++.|++++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3445566677777777665432    222344556666666665543211          11223344555555555555


Q ss_pred             cccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCch-------------hhhcCCCCCeEe
Q 041178          455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV-------------QLAKLFSLNKLI  521 (725)
Q Consensus       455 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~~~~L~~L~  521 (725)
                      +.......                    +...+..+++|+.|++++|.+......             .....+.|+.++
T Consensus       105 i~~~~~~~--------------------l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1         105 FGPTAQEP--------------------LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  164 (344)
T ss_dssp             CCTTTHHH--------------------HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             cccccccc--------------------hhhhhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence            44321111                    111222344455555555443211000             112344566666


Q ss_pred             ccCceecCC----CCccccCccccccccccccccccc-----cccccccCCCCCEEeCCCCcCccc----Chhhhhcccc
Q 041178          522 LSLNQLSGG----MPFELGSLTELQYLDLSANKLRSW-----IPKSIGNLLKLRYLNLSNNQFIQK----IPIEVEKLIH  588 (725)
Q Consensus       522 L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~  588 (725)
                      +++|.+...    +...+...+.|++|++++|.+...     +.+.+..+++|+.|++++|.++..    +...+..++.
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            666655422    122234455666666666665431     223455666777777777766432    3344556677


Q ss_pred             cccccccccccCccCcc----ccc--CCCCCCEEeCCCCccccc----cCcccc-CCCCCCEEeCcCCCcc
Q 041178          589 LSKLDLSYNFLGKEMPF----QIC--NMKSLEKLNLCHNNLSGF----IPRCFE-GMHNLSHIDISYNELQ  648 (725)
Q Consensus       589 L~~L~Ls~N~l~~~~p~----~~~--~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l~  648 (725)
                      |++|+|++|.+++.-..    .+.  ..+.|++|++++|++...    +...+. ++++|++|++++|.+.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            77777777776544222    222  235688888888877632    233332 4667888888888774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=7.5e-15  Score=151.19  Aligned_cols=252  Identities=19%  Similarity=0.190  Sum_probs=148.9

Q ss_pred             CcccccCCCCCCEEECcCcccccc----ccccccCCCCCcEEEcCCCcCCCC----------CCccccCCCCCcEEECcC
Q 041178          363 VPEEIGYLKSIFELELCTNRLRGG----IPHSIGNLTELVLVNMCENHLSGP----------IPKSLRNLTSLERVRFNQ  428 (725)
Q Consensus       363 ~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----------~p~~l~~l~~L~~L~l~~  428 (725)
                      +...+.....+++|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            334566778999999999988643    344567789999999988754322          123356688999999999


Q ss_pred             ccccccc----cccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccc
Q 041178          429 NNLSGKV----YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIV  504 (725)
Q Consensus       429 n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~  504 (725)
                      |.++...    ...+...++|++|++++|.+.......+..  .+..+         .........+.|+.+++++|.+.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence            9987653    334456789999999998875321111100  00000         00001112334555555555443


Q ss_pred             cc----CchhhhcCCCCCeEeccCceecCC-----CCccccCccccccccccccccccc----cccccccCCCCCEEeCC
Q 041178          505 GE----IPVQLAKLFSLNKLILSLNQLSGG-----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLS  571 (725)
Q Consensus       505 ~~----~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls  571 (725)
                      ..    +...+..++.|++|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            22    222344455666666666665421     223345566677777777766432    23445667777777777


Q ss_pred             CCcCcccChhh----hhc--ccccccccccccccCcc----Cccccc-CCCCCCEEeCCCCcccc
Q 041178          572 NNQFIQKIPIE----VEK--LIHLSKLDLSYNFLGKE----MPFQIC-NMKSLEKLNLCHNNLSG  625 (725)
Q Consensus       572 ~n~l~~~~p~~----~~~--l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~  625 (725)
                      +|.+.+.-...    +..  .+.|++|++++|.++..    +...+. ++++|+.|++++|++..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            77775542222    222  24577778887777543    223332 46778888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=8.9e-14  Score=118.98  Aligned_cols=101  Identities=31%  Similarity=0.339  Sum_probs=47.0

Q ss_pred             eEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccc
Q 041178          519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNF  598 (725)
Q Consensus       519 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  598 (725)
                      .|+|++|+++ .++ .+..+++|++|++++|+++. +|+.++.+++|++|++++|.+++ +| .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            3444444444 222 24444555555555555543 34444555555555555555432 22 24445555555555555


Q ss_pred             cCccC-cccccCCCCCCEEeCCCCccc
Q 041178          599 LGKEM-PFQICNMKSLEKLNLCHNNLS  624 (725)
Q Consensus       599 l~~~~-p~~~~~l~~L~~L~Ls~N~l~  624 (725)
                      ++... ...+..+++|+.|++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            53321 133444555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.7e-14  Score=126.06  Aligned_cols=110  Identities=23%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178          128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN  207 (725)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  207 (725)
                      .++.+|++|+|++|+++ .+|..+..+++|++|++++|.++. + +.+..+++|++|++++|.++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34444455555555544 223333444455555555554442 2 12444445555555555444332222334445555


Q ss_pred             EEccCCcCCccCc-cccCCCCCCCEEEccCCcCc
Q 041178          208 FYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLS  240 (725)
Q Consensus       208 L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  240 (725)
                      |++++|.+..... ..+..+++|++|++++|.++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc
Confidence            5555554432111 23444555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.3e-13  Score=116.32  Aligned_cols=78  Identities=29%  Similarity=0.454  Sum_probs=36.0

Q ss_pred             cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178          110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN  189 (725)
Q Consensus       110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  189 (725)
                      |+|+|++|+++. ++ .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.+++ +| .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            345555555542 22 2445555555555555554 334444445555555555554442 22 2444444444444444


Q ss_pred             cCC
Q 041178          190 NLY  192 (725)
Q Consensus       190 ~l~  192 (725)
                      .+.
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=1.1e-13  Score=129.40  Aligned_cols=131  Identities=25%  Similarity=0.275  Sum_probs=98.2

Q ss_pred             cCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhc
Q 041178          506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK  585 (725)
Q Consensus       506 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  585 (725)
                      .++..+..+++|++|+|++|+++. ++ .+..+++|++|++++|.++. +|..+..+++|++|++++|+++..  ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccc
Confidence            455677888888888888888874 43 47788888888888888876 455555567788888888888643  35778


Q ss_pred             ccccccccccccccCccCc-ccccCCCCCCEEeCCCCccccccCcc----------ccCCCCCCEEe
Q 041178          586 LIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLSGFIPRC----------FEGMHNLSHID  641 (725)
Q Consensus       586 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  641 (725)
                      +++|++|++++|.++.... ..+..+++|+.|++++|++....+..          +..+++|++||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888999999998855322 46788889999999999887554432          45678888887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.9e-13  Score=127.68  Aligned_cols=129  Identities=24%  Similarity=0.201  Sum_probs=80.6

Q ss_pred             CccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCC
Q 041178          484 PLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL  563 (725)
Q Consensus       484 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  563 (725)
                      |..+..+++|++|++++|+++.. + .+..+++|++|++++|.++ .+|.....+++|++|++++|+++..  +.+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            34455566666666666666533 2 3666667777777777766 3444444556677777777777653  2366667


Q ss_pred             CCCEEeCCCCcCcccCh-hhhhcccccccccccccccCccCccc----------ccCCCCCCEEe
Q 041178          564 KLRYLNLSNNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQ----------ICNMKSLEKLN  617 (725)
Q Consensus       564 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~  617 (725)
                      +|+.|++++|+++.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77777777777654321 34666777777777777765443322          45678888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-11  Score=109.00  Aligned_cols=108  Identities=19%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             ccccccccccccccccccccccCCCCCEEeCCCCc-CcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeC
Q 041178          540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ-FIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL  618 (725)
Q Consensus       540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  618 (725)
                      ..+.++.+++.+.. .|..+..+++|++|++++|+ ++...+..|.++++|+.|+|++|+++...|..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34455666665554 45566667777777776553 66555666777777777777777777766777888888888888


Q ss_pred             CCCccccccCccccCCCCCCEEeCcCCCccc
Q 041178          619 CHNNLSGFIPRCFEGMHNLSHIDISYNELQG  649 (725)
Q Consensus       619 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  649 (725)
                      ++|+++...+..|..+ .|++|++++|++..
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C  117 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLHC  117 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcccC
Confidence            8888875545555444 68888888888753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.1e-11  Score=106.04  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             CcEEECCCCCCCccCchhccCCCCCCEEECCCC-CCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178          109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN-QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC  187 (725)
Q Consensus       109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  187 (725)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+++|.++++|++|++++|+++...|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555554443 23444555555555555433 2443334445555555555555555554444445555555555555


Q ss_pred             CCcCC
Q 041178          188 HNNLY  192 (725)
Q Consensus       188 ~n~l~  192 (725)
                      +|+++
T Consensus        89 ~N~l~   93 (156)
T d2ifga3          89 FNALE   93 (156)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            55554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.4e-08  Score=90.50  Aligned_cols=104  Identities=27%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             CccccccccccccccccccccccccCCCCCEEeCCCCcCccc--ChhhhhcccccccccccccccCccCcccccCCCCCC
Q 041178          537 SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK--IPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE  614 (725)
Q Consensus       537 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  614 (725)
                      .+..+..++...+.... ++..+..+++|++|+|++|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|+
T Consensus        40 ~~~~~~~l~~~~~~~~~-l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          40 AQNIDVVLNRRSSMAAT-LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             TTTCCCCTTSHHHHHHH-HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hccchhhcchhhhHhhh-hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            34444555555544333 444556788888888888888754  345577788888888888888654443444455788


Q ss_pred             EEeCCCCccccccCcc-------ccCCCCCCEEe
Q 041178          615 KLNLCHNNLSGFIPRC-------FEGMHNLSHID  641 (725)
Q Consensus       615 ~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~  641 (725)
                      .|++++|+++......       +..+++|++||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            8888888887654422       56678888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.8e-08  Score=89.79  Aligned_cols=83  Identities=25%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             ccCcccccccccccccccccc--ccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc-------c
Q 041178          535 LGSLTELQYLDLSANKLRSWI--PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-------F  605 (725)
Q Consensus       535 ~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-------~  605 (725)
                      +..+++|++|+|++|+++...  +..+..+++|+.|++++|.++...+..+.....|+.|++++|.+.....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            345566666666666665532  3345566777777777777654433333344567777777777755433       2


Q ss_pred             cccCCCCCCEEe
Q 041178          606 QICNMKSLEKLN  617 (725)
Q Consensus       606 ~~~~l~~L~~L~  617 (725)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            255678888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=5.7e-06  Score=73.49  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             cccCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccc----
Q 041178          559 IGNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGF----  626 (725)
Q Consensus       559 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----  626 (725)
                      +...+.|++|+|++|.+...    +...+...+.|++|+|++|.++..    +-..+...++|++|++++|.....    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            34445566666666555422    222334445566666666665433    223345556777777777654421    


Q ss_pred             ---cCccccCCCCCCEEeCcCCC
Q 041178          627 ---IPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       627 ---~p~~l~~l~~L~~L~ls~N~  646 (725)
                         +...+...++|+.|+++++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               33445556677777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=2.4e-05  Score=69.28  Aligned_cols=17  Identities=18%  Similarity=0.202  Sum_probs=7.9

Q ss_pred             hcCCCCCeEeccCceec
Q 041178          512 AKLFSLNKLILSLNQLS  528 (725)
Q Consensus       512 ~~~~~L~~L~L~~n~l~  528 (725)
                      ...+.|++|+|++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          41 CNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCccceeeccccccc
Confidence            33444555555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.12  E-value=7.9e-05  Score=65.76  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=28.1

Q ss_pred             cccccccccccccccCcc----CcccccCCCCCCEEeC--CCCcccc----ccCccccCCCCCCEEeCcCCC
Q 041178          585 KLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNL--CHNNLSG----FIPRCFEGMHNLSHIDISYNE  646 (725)
Q Consensus       585 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~----~~p~~l~~l~~L~~L~ls~N~  646 (725)
                      ..++++.+++++|.++..    +-..+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.++
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            334444455544444322    1233344455554333  3444432    233344455666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=5.2e-05  Score=67.02  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             ccCCCCCEEeCCCCcCccc----Chhhhhccccccc--ccccccccCcc----CcccccCCCCCCEEeCCCCcc
Q 041178          560 GNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSK--LDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNL  623 (725)
Q Consensus       560 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~--L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l  623 (725)
                      ...++++.+++++|.+...    +...+...++|+.  |++++|.+...    +...+...++|+.|+++.+..
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3445566666666555332    2223344455554  33344555331    334445567777777766543