Citrus Sinensis ID: 041205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKITGKKKMARAEKASEEAPSSSQANTSKFQSDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIRSEQDKNRQLRNCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLKAANNA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEHHHHccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccEEEEEEEccccccccEEEEEEcccccccccccccccHHHHccccccccHHHHHHHccccccccccccccccccccccHHHHHccccHHHHccHHHHHHHHHHHccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHcccHcccEEEEEccHHccHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEccccHHHEEcccccHHHcccEEEEEEcccccEEEEEEEEEccccccccEccccccccccccccHHHHHHHHHHHHcHccccccccEEEccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mashqnlnfqgqipGEFLIARIMQIHASISKleslrpskqVNILFSHLVKLCilpssidikaLPQEVQQMRQSLIILCARAESLLELEFATYLSKislplndlnrfpyyeNYVKLAKLEYGALIENTGVAQLKKVafvgsgpmpltSIILASQHmksthfdnidiDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAkgaraflypvvehelfdfkvlsifhptndvINSVVllqlpkdppklvlkdkESVSQLqenrpritsqllhdkllpqaspnnkpylfngnscpcnhleaLDASKRAKITGKKKMARAekaseeapsssqantskfqsdqwleiestssglTLADLLREKRAEVEHLVPLIQkadrvipkshaadaekiplsttWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIRSEQDKNRQLRNCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLKAANNA
Flexible Loop (DISEMBL)
mashqnlnfqgQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKislplndlnRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARrivssddeieKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKITGKKKMARAEKaseeapsssqantsKFQSDQWLEIESTSSGLTLADLLREKRAEVEHLVPliqkadrvipkshaadaekiplstTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIrseqdknrqLRNCILQLTQSLQAEEKRRFEVEAELetlkqkvddqlkaanna
Low Complexity Region (SEG)
MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSvvllqlpkdppklvlkdkESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKITGKKKMaraekaseeapsssqaNTSKFQSDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIRSEQDKNRQLRNCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLKAANNA
Disordered region (IsUnstruct)
********FQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLP*******************************************YLFNGNSCPCNHL****************************************************LTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQ****************************CILQ************************************
Disordered Region (DISOPRED)
*************PGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKD*****L****SVSQLQENRPRITSQLL*************PYLFNGNSCPCNHLEALDA*************************************WLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNL*A************************CILQLTQ*************AELETLKQKVD*********
Disordered Region (DISEMBL)
MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAK*****************************SDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIRSEQDKNRQLRNCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLKAANNA
Disordered Region (DISPRO)
******LNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKIT***K***********************SDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQNLEAAQKQVTELSEKIRSEQDKNRQLRNCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLKAANN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQLQENRPRITSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKITGKKKMARAEKASEEAPSSSQANTSKFQSDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQKADRVIPKSHAADAEKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILQLTQSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
O80483	320	Nicotianamine synthase 3	yes	no	0.489	0.818	0.530	3e-69
Q9XGI7	317	Nicotianamine synthase OS	N/A	no	0.497	0.839	0.474	5e-69
Q9C7X5	324	Probable nicotianamine sy	no	no	0.538	0.888	0.453	4e-66
Q9ZQV7	335	Probable nicotianamine sy	N/A	no	0.497	0.794	0.431	5e-63
Q9ZQV8	335	Probable nicotianamine sy	N/A	no	0.497	0.794	0.425	1e-62
Q9FF79	320	Nicotianamine synthase 1	no	no	0.484	0.809	0.473	1e-62
Q9FKT9	320	Nicotianamine synthase 2	no	no	0.484	0.809	0.486	2e-62
Q9XFB7	340	Nicotianamine synthase 9	N/A	no	0.489	0.770	0.451	6e-62
Q10MI9	326	Nicotianamine synthase 2	yes	no	0.485	0.797	0.456	1e-61
Q0DSH9	332	Nicotianamine synthase 1	no	no	0.485	0.783	0.456	4e-61

>sp|O80483|NAS3_ARATH Nicotianamine synthase 3 OS=Arabidopsis thaliana GN=NAS3 PE=2 SV=1

 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/266 (53%), Positives = 187/266 (70%), Gaps = 4/266 (1%)

Query: 16  EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS-SIDIKALPQEVQQMRQSL 74
           E L+  I  ++  ISKLESL+PS+ VNILF  LV  CI P+ +ID+  +   VQ++R +L
Sbjct: 6   EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query: 75  IILCARAESLLELEFATYLSKI-SLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLK 133
           I +C  AE  LE  F++ L+     PL+ LN FPYY NY+KL KLE+  L +N      K
Sbjct: 66  IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFVPK 125

Query: 134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD 193
            VAF+GSGP+PLTSI+LAS H+K T F N DID +AN+LA  +VSSD +I +RM F T D
Sbjct: 126 SVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTVD 185

Query: 194 IMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV 252
           IM+V E L  +D + LAAL G N+EEK K++ H++K+M  G VL++RSA G RAFLYP+V
Sbjct: 186 IMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPIV 245

Query: 253 E-HELFDFKVLSIFHPTNDVINSVVL 277
           E  +L  F+VLSI+HPT+DVINSVV+
Sbjct: 246 EPCDLQGFEVLSIYHPTDDVINSVVI 271

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 193/272 (70%), Gaps = 6/272 (2%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIIL 77
           ++ ++ +++  IS+LE+L PSK VN+LF+ LV  C+ P+ ID+  L Q++Q++R  LI L
Sbjct: 9   VVEKVCELYEQISRLENLSPSKDVNVLFTDLVHTCMPPNPIDVSKLCQKIQEIRSHLIKL 68

Query: 78  CARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAF 137
           C +AE LLE  F+  LS    PL  L+ FPY++NY+KL+ LEY  L +NT     KK+AF
Sbjct: 69  CGQAEGLLESHFSKILSSYENPLQHLHIFPYFDNYIKLSLLEYNILTKNTTNIP-KKIAF 127

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV 197
           +GSGP+PLTS++LA++H+K+T F N DID  AN +A  +V++D ++  RM F T D+M+V
Sbjct: 128 IGSGPLPLTSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTFHTADVMDV 187

Query: 198 KEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVE-HE 255
              L +YD + LAAL G ++E+K K++ H+ KYM  G  L++RSA GARAFLYPV++  +
Sbjct: 188 TCALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARAFLYPVLDPRD 247

Query: 256 LFDFKVLSIFHPTNDVINSVVL---LQLPKDP 284
           L  F+VLS++HPT++VINSV++   L +P  P
Sbjct: 248 LRGFEVLSVYHPTDEVINSVIIARKLPVPSVP 279

Synthesizes nicotianamine, a polyamine that serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9C7X5|NAS4_ARATH Probable nicotianamine synthase 4 OS=Arabidopsis thaliana GN=NAS4 PE=2 SV=1

 Score =  252 bits (644), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/293 (45%), Positives = 198/293 (67%), Gaps = 5/293 (1%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS-SIDIKALPQEVQQMRQSLII 76
           L+ +I  ++  ISKLE+L+P + V+ LF  LV  CI P+ +ID+  + + +Q+MR +LI 
Sbjct: 9   LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68

Query: 77  LCARAESLLELEFATYLSKI-SLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKV 135
           +C  AE  LE  F++ L+     PL+ LN FPYY NY+KL+KLE+  L +N      + V
Sbjct: 69  ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFVPRTV 128

Query: 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195
           AF+GSGP+PLTS++LAS H+K + F N DID +AN +A R+VSSD ++ +RM F T DIM
Sbjct: 129 AFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFHTVDIM 188

Query: 196 EVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVE- 253
           +V E L  +D + LAAL G +++EK K++ H+ K+M  G +L++RSA G RAFLYP+VE 
Sbjct: 189 DVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVEP 248

Query: 254 HELFDFKVLSIFHPTNDVINSVVL-LQLPKDPPKLVLKDKESVSQLQENRPRI 305
            +L  F+VLS++HPT++VINS+V+  +L +D   +V    +  S L  N  +I
Sbjct: 249 CDLEGFEVLSVYHPTDEVINSIVISRKLGEDANGVVHDHIDQASDLACNCSKI 301

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV7|NAS2_HORVU Probable nicotianamine synthase 2 OS=Hordeum vulgare GN=NAS2 PE=2 SV=1

 Score =  242 bits (618), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/271 (43%), Positives = 175/271 (64%), Gaps = 5/271 (1%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIIL 77
           L+ +I  +HA+I+KL SL PS  V+ LF+ LV  C+ PS +D+  L  E Q+MR+ LI L
Sbjct: 12  LVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDVTKLGPEAQEMREGLIRL 71

Query: 78  CARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENT-GVAQLKKVA 136
           C+ AE  LE  ++  L+    PL+ L  FPYY NY+ L+KLEY  L     G  +  +VA
Sbjct: 72  CSEAEGKLEAHYSDMLAAFDKPLDHLGMFPYYNNYINLSKLEYELLARYVPGGYRPARVA 131

Query: 137 FVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME 196
           F+GSGP+P +S +LA++H+  T FDN D+   AN+ A ++  +D ++  RM F T D+ +
Sbjct: 132 FIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADRDVGARMSFHTADVAD 191

Query: 197 VKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHE 255
           +  +L +YD + LAAL G   E+KAK++ H+  +M +G  L+VRSA GAR FLYP+V+ +
Sbjct: 192 LAGELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHGARGFLYPIVDPQ 251

Query: 256 LF---DFKVLSIFHPTNDVINSVVLLQLPKD 283
                 F+VL++ HP +DV+NSV++ Q  KD
Sbjct: 252 DIGRGGFEVLAVCHPDDDVVNSVIIAQKSKD 282

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV8|NAS3_HORVU Probable nicotianamine synthase 3 OS=Hordeum vulgare GN=NAS3 PE=2 SV=1

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 174/270 (64%), Gaps = 4/270 (1%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIIL 77
           L+ +I  +HA+I+KL SL PS  V+ LF+ LV  C+ PS +D+  L  E Q+MR+ LI L
Sbjct: 13  LVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDVTKLGPEAQEMREGLIRL 72

Query: 78  CARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAF 137
           C+ AE  LE  ++  L+    PL+ L  FPYY NY+ L+KLEY  L       +  +VAF
Sbjct: 73  CSEAEGKLEAHYSDMLAAFDNPLDHLGIFPYYSNYINLSKLEYELLARYVRRHRPARVAF 132

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV 197
           +GSGP+P +S +LA++H+  T FDN D+   AN+ A ++  +D ++  RM F T D+ ++
Sbjct: 133 IGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADTDVGARMSFHTADVADL 192

Query: 198 KEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL 256
             +L +YD + LAAL G   E+KAK++ H+  +M +G  L+VRSA GAR FLYP+V+ + 
Sbjct: 193 ASELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHGARGFLYPIVDPQD 252

Query: 257 F---DFKVLSIFHPTNDVINSVVLLQLPKD 283
                F+VL++ HP +DV+NSV++ Q  K+
Sbjct: 253 IGRGGFEVLAVCHPDDDVVNSVIIAQKSKE 282

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FF79|NAS1_ARATH Nicotianamine synthase 1 OS=Arabidopsis thaliana GN=NAS1 PE=2 SV=1

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/268 (47%), Positives = 180/268 (67%), Gaps = 9/268 (3%)

Query: 17  FLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS--SIDIKALPQEVQQMRQSL 74
            ++ +I+ ++  ISKL+SL+PSK V+ LF  LV  C LP+  +ID+  + +EV+ MR +L
Sbjct: 7   LVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTC-LPTDTNIDVTNMCEEVKDMRANL 65

Query: 75  IILCARAESLLELEFATYLSKIS---LPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQ 131
           I LC  AE  LE  F+T L  +     PL+ L+ FPYY NY+KL KLE+  L +++    
Sbjct: 66  IKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQHSSHVP 125

Query: 132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT 191
             K+AFVGSGPMPLTSI+LA  H+ +T F N DID  AN LA  +VS D ++ KRM F T
Sbjct: 126 -TKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRMIFHT 184

Query: 192 CDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYP 250
            D++   E L +YD + LAAL G ++E K K + H+ K+M  G VL++RSA   RAFLYP
Sbjct: 185 TDVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYP 244

Query: 251 VVE-HELFDFKVLSIFHPTNDVINSVVL 277
           +V+  +L  F++L+I+HPT+DV+NSVV+
Sbjct: 245 IVDSSDLKGFQLLTIYHPTDDVVNSVVI 272

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FKT9|NAS2_ARATH Nicotianamine synthase 2 OS=Arabidopsis thaliana GN=NAS2 PE=2 SV=1

 Score =  240 bits (613), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/267 (48%), Positives = 177/267 (66%), Gaps = 8/267 (2%)

Query: 17  FLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS--SIDIKALPQE-VQQMRQS 73
            ++ +IM ++  IS LESL+PSK V+ LF  LV  C LP+  +ID+  +  E V+ MR  
Sbjct: 7   LVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTC-LPTDTNIDVTEIHDEKVKDMRSH 65

Query: 74  LIILCARAESLLELEFATYLSKI-SLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQL 132
           LI LC  AE  LE  F+  L      PLN L+ FPYY NY+KL KLE+  L ++T     
Sbjct: 66  LIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHTTHVP- 124

Query: 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192
            KVAF+GSGPMPLTSI+LA  H+ +T F N DID  AN LA  +VS D ++ KRM F T 
Sbjct: 125 TKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTT 184

Query: 193 DIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPV 251
           D++  KE L +YD + LAAL G ++E K K + H+ K+M  G V+++RSA G RAFLYP+
Sbjct: 185 DVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFLYPI 244

Query: 252 VEH-ELFDFKVLSIFHPTNDVINSVVL 277
           V+  +L  F+VL+I+HP++DV+NSVV+
Sbjct: 245 VDSCDLKGFEVLTIYHPSDDVVNSVVI 271

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9XFB7|NAS9_HORVU Nicotianamine synthase 9 OS=Hordeum vulgare GN=NAS9 PE=1 SV=1

 Score =  238 bits (608), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/266 (45%), Positives = 173/266 (65%), Gaps = 4/266 (1%)

Query: 16  EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLI 75
           E L+ +I  + A+I +L SL PS +VN LF+ LV  CI PS++D+ AL  + Q+MR  LI
Sbjct: 16  EALVKKITGLAAAIGELPSLSPSPEVNALFTELVTSCIPPSTVDVDALGPDAQEMRARLI 75

Query: 76  ILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKV 135
            LCA AE  LE  ++  L+    PL+ L  FPY+ NY+KL++LE+G L  +       +V
Sbjct: 76  RLCADAEGHLEAHYSDLLAAHDNPLDHLTLFPYFNNYIKLSQLEHGLLARHVPGPAPARV 135

Query: 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195
           AF+GSGP+PL+S++LA++H+    FDN DI   AN  A R+V +D +   RM F T D+ 
Sbjct: 136 AFLGSGPLPLSSLVLAARHLPDASFDNYDISGEANERASRLVRADADAGARMAFRTADVA 195

Query: 196 EVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH 254
           +V  +L  YD + LAAL G   EEKA+++ H+ ++M  G  L+VRSA GAR FLYPVV+ 
Sbjct: 196 DVTTELEGYDVVFLAALVGMAAEEKARLVEHLGRHMAPGAALVVRSAHGARGFLYPVVDP 255

Query: 255 ELF---DFKVLSIFHPTNDVINSVVL 277
           E      F+VL++ HP ++VINSV++
Sbjct: 256 EEIRRGGFEVLTVHHPEDEVINSVII 281

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q10MI9|NAS2_ORYSJ Nicotianamine synthase 2 OS=Oryza sativa subsp. japonica GN=NAS2 PE=2 SV=1

 Score =  238 bits (606), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 166/265 (62%), Gaps = 5/265 (1%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIIL 77
           L+ +I  +HA+ISKL SL PS +V+ LF+ LV  C+  S +D+  L  E Q MR+ LI L
Sbjct: 11  LVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASPVDVAKLGPEAQAMREELIRL 70

Query: 78  CARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAF 137
           C+ AE  LE  +A  L+    PL+ L RFPYY NYV L+KLEY  L+         +VAF
Sbjct: 71  CSAAEGHLEAHYADMLAAFDNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGIAPTRVAF 130

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME 196
           VGSGP+P +S++LA+ H+    FDN D    AN  ARR+    DE +  RM F T D+  
Sbjct: 131 VGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAFHTADVAT 190

Query: 197 VKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHE 255
           +  +LG YD + LAAL G   EEKA ++ H+  +M +G  L+VRSA GAR FLYP+V+ E
Sbjct: 191 LTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFLYPIVDLE 250

Query: 256 LF---DFKVLSIFHPTNDVINSVVL 277
                 F VL+++HP ++VINSV++
Sbjct: 251 DIRRGGFDVLAVYHPDDEVINSVIV 275

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0DSH9|NAS1_ORYSJ Nicotianamine synthase 1 OS=Oryza sativa subsp. japonica GN=NAS1 PE=2 SV=1

 Score =  236 bits (602), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 165/265 (62%), Gaps = 5/265 (1%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIIL 77
           L+ +I  +HA+ISKL SL PS +V+ LF+ LV  C+  S +D+  L  E Q MR+ LI L
Sbjct: 11  LVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASPVDVAKLGPEAQAMREELIRL 70

Query: 78  CARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAF 137
           C+ AE  LE  +A  L+    PL+ L RFPYY NYV L+KLEY  L+         +VAF
Sbjct: 71  CSAAEGHLEAHYADMLAAFDNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGIAPTRVAF 130

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME 196
           VGSGP+P +S++LA+ H+    FDN D    AN  ARR+    DE +  RM F T D+  
Sbjct: 131 VGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAFHTADVAT 190

Query: 197 VKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHE 255
           +  +LG YD + LAAL G   EEKA ++ H+  +M +G  L+VRSA GAR FLYP+V+ E
Sbjct: 191 LTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFLYPIVDPE 250

Query: 256 LF---DFKVLSIFHPTNDVINSVVL 277
                 F VL++ HP ++VINSV++
Sbjct: 251 DVRRGGFDVLAVCHPEDEVINSVIV 275

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
255585340	319	Nicotianamine synthase, putative [Ricinu	0.523	0.877	0.720	1e-115
224131702	284	predicted protein [Populus trichocarpa]	0.523	0.985	0.742	1e-111
225446092	284	PREDICTED: nicotianamine synthase isofor	0.527	0.992	0.684	1e-107
255585344	669	nicotianamine synthase, putative [Ricinu	0.514	0.411	0.697	1e-106
356528734	286	PREDICTED: nicotianamine synthase-like [	0.525	0.982	0.678	1e-104
388512831	284	unknown [Medicago truncatula]	0.525	0.989	0.661	1e-103
449500282	285	PREDICTED: nicotianamine synthase-like [	0.515	0.968	0.630	5e-98
449457247	289	PREDICTED: nicotianamine synthase-like [	0.515	0.955	0.630	2e-97
225450591	308	PREDICTED: nicotianamine synthase [Vitis	0.487	0.847	0.526	4e-71
147778256	308	hypothetical protein VITISV_020491 [Viti	0.487	0.847	0.522	5e-71

>gi|255585340|ref|XP_002533367.1| Nicotianamine synthase, putative [Ricinus communis] gi|223526789|gb|EEF29012.1| Nicotianamine synthase, putative [Ricinus communis]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/283 (72%), Positives = 237/283 (83%), Gaps = 3/283 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MAS QN NF  QIP E LIA I QIH +ISKL+SLRPSKQVN LFSHLVKLCI+PSSIDI
Sbjct: 36  MASLQNTNFDSQIPAELLIASITQIHGAISKLDSLRPSKQVNGLFSHLVKLCIIPSSIDI 95

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
            +LP+E Q+MR+SLI+LC RAE LLELEFAT+L KI  PL ++N FPYY NYVKLA LEY
Sbjct: 96  TSLPEEAQEMRKSLIVLCGRAEGLLELEFATFLIKIPQPLANVNLFPYYANYVKLANLEY 155

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             L EN G+ Q KKVAFVGSGPMPLTSI++A+ H+++THFDN DIDE AN++AR+IV SD
Sbjct: 156 SILSEN-GIVQPKKVAFVGSGPMPLTSIVMATHHLRATHFDNFDIDEAANDVARKIVGSD 214

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            ++EKRMKF TCD+MEVKEKL EYDCI LAAL G ++EEK KILGH+RKYMKEGG+LLVR
Sbjct: 215 SDLEKRMKFETCDVMEVKEKLREYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGILLVR 274

Query: 240 SAKGARAFLYPVVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP 281
           SA GARAFLYPV++  +L  F VLSIFHPTNDVINSV+L + P
Sbjct: 275 SANGARAFLYPVIDDKDLVGFDVLSIFHPTNDVINSVILARKP 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131702|ref|XP_002328087.1| predicted protein [Populus trichocarpa] gi|222837602|gb|EEE75967.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/283 (74%), Positives = 235/283 (83%), Gaps = 3/283 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MA+ Q  N + QI  E LIAR+ QIHASISKL SLRPSKQVN LFS+LVKLCILPSSIDI
Sbjct: 1   MAALQISNCESQISTELLIARVTQIHASISKLSSLRPSKQVNSLFSNLVKLCILPSSIDI 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
            ALP+EVQ MR+SLI LC  AE LLELEFAT+LSKI  PLN+LN FPYY NYVKLA +EY
Sbjct: 61  TALPEEVQAMRESLINLCGHAEGLLELEFATFLSKIHQPLNNLNLFPYYGNYVKLANIEY 120

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             L E+  V Q KKVAFVGSGPMPLTS I+A+ HMK THFDN DIDE AN++AR+IV+SD
Sbjct: 121 RILNESV-VLQPKKVAFVGSGPMPLTSFIMATHHMKFTHFDNFDIDEAANDVARQIVASD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            E+EKRMKF T DIMEVKEKL EYDCI LAAL G ++ +K KILGHIRKYMKEGGVLLVR
Sbjct: 180 VELEKRMKFETGDIMEVKEKLSEYDCIFLAALVGMSKADKVKILGHIRKYMKEGGVLLVR 239

Query: 240 SAKGARAFLYPVV-EHELFDFKVLSIFHPTNDVINSVVLLQLP 281
           SAKGARAFLYPVV E ++  F++LSIFHPTNDVINSVVLL+ P
Sbjct: 240 SAKGARAFLYPVVEEQDVLGFELLSIFHPTNDVINSVVLLRKP 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446092|ref|XP_002270091.1| PREDICTED: nicotianamine synthase isoform 1 [Vitis vinifera] gi|359485000|ref|XP_003633197.1| PREDICTED: nicotianamine synthase isoform 2 [Vitis vinifera] gi|147835105|emb|CAN70188.1| hypothetical protein VITISV_039081 [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/285 (68%), Positives = 235/285 (82%), Gaps = 3/285 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MAS Q  + +  +  E LIARI+QIHA+I KLESLRPSKQVN LF+HLVKLC  PSSIDI
Sbjct: 1   MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDI 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
            ALP+E+Q +RQSLI LC RAE LLELEF+T+L+ +   LN+LN FPYY NYVKLA LEY
Sbjct: 61  TALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNVPQALNNLNLFPYYGNYVKLANLEY 120

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             L +N GV Q KKVAF+GSGP+PLT++I+A+ HMKST FDN D+DE+AN +AR++V+SD
Sbjct: 121 RILSDN-GVVQPKKVAFIGSGPLPLTTLIMATHHMKSTCFDNFDMDESANAVARQLVASD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            E+++R+KF T DIMEV++KLGEYDCI LAAL G ++EEK KILGH+RKYMKEGG LLVR
Sbjct: 180 AELQRRVKFETRDIMEVRDKLGEYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGTLLVR 239

Query: 240 SAKGARAFLYPVVEHE-LFDFKVLSIFHPTNDVINSVVLLQLPKD 283
           SAKGARAFLYPVVE E L  F+VL+IFHPTN+VINSVVL + P D
Sbjct: 240 SAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLARKPID 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585344|ref|XP_002533369.1| nicotianamine synthase, putative [Ricinus communis] gi|223526791|gb|EEF29014.1| nicotianamine synthase, putative [Ricinus communis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 222/278 (79%), Gaps = 3/278 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MAS QN N   QIP E  I RI QIH +ISKL+SLRPSKQVN LFSHLVKLCILPSSI+I
Sbjct: 1   MASLQNSNSGSQIPAEVFIPRIKQIHGAISKLDSLRPSKQVNSLFSHLVKLCILPSSINI 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
            +LP+E Q+MR+SLI LC RAE LLEL+FAT+L K   P N LN FPYY NYVKLA LEY
Sbjct: 61  TSLPKEAQEMRKSLIDLCGRAEGLLELDFATFLIKSPQPFNHLNLFPYYGNYVKLANLEY 120

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             L E   + Q KKVAF+GSG MPLTSII+A+ H+K   FDN DIDE+AN  AR+IV SD
Sbjct: 121 RILGE-ISIIQPKKVAFIGSGAMPLTSIIMATHHLKLAQFDNFDIDESANEFARKIVGSD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            +++KRMKF TCD+MEVKEKLGEYDCI LAAL G  +EEK KI+ HIRKYMKEGG+LLVR
Sbjct: 180 SDLQKRMKFETCDVMEVKEKLGEYDCIFLAALVGMTKEEKVKIIRHIRKYMKEGGILLVR 239

Query: 240 SAKGARAFLYPVVEH-ELFDFKVLSIFHPTNDVINSVV 276
           SA GARAFLYPVV++ +L  F+ LSIFHPTNDVINSV+
Sbjct: 240 SANGARAFLYPVVDYKDLVGFEFLSIFHPTNDVINSVL 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528734|ref|XP_003532954.1| PREDICTED: nicotianamine synthase-like [Glycine max]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 231/286 (80%), Gaps = 5/286 (1%)

Query: 1   MASHQNLNF--QGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSI 58
           MA+ Q++N     QIP E LI++IMQ+HASISKLESLRP KQVN  F+HLVKLC LPS+I
Sbjct: 1   MAAFQSINNIETQQIPPELLISQIMQLHASISKLESLRPCKQVNSHFTHLVKLCTLPSTI 60

Query: 59  DIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKL 118
           DI+ALP+EVQ MR SLI L   AE LLELEF+T++S    P+ ++  FPYY NYVKLA +
Sbjct: 61  DIEALPKEVQDMRDSLINLSGHAEGLLELEFSTFISLTPEPMKNVTLFPYYGNYVKLANM 120

Query: 119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS 178
           E   L EN GV   KKVAFVGSGPMPLTSI++A+ HM+STHFDN DIDE AN +AR+IV+
Sbjct: 121 ESKILKEN-GVLSPKKVAFVGSGPMPLTSIVMATHHMESTHFDNFDIDEKANEVARKIVA 179

Query: 179 SDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLL 237
           SD  +EKRMKF T D+MEV+E+LG+YDCI LAAL G + E K KILGHIRKYMKEGG LL
Sbjct: 180 SDSALEKRMKFETQDVMEVRERLGQYDCIFLAALVGMSREAKVKILGHIRKYMKEGGTLL 239

Query: 238 VRSAKGARAFLYPVV-EHELFDFKVLSIFHPTNDVINSVVLLQLPK 282
           VRSAKGARAFLYP+V E ++ +F+VL+IFHPTNDVINSVVLL+ PK
Sbjct: 240 VRSAKGARAFLYPIVEERDMVNFEVLTIFHPTNDVINSVVLLRKPK 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512831|gb|AFK44477.1| unknown [Medicago truncatula]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/284 (66%), Positives = 228/284 (80%), Gaps = 3/284 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MAS Q+ NF+ +IP E LI++IMQIH +ISKLESLRPSKQVN L +HLVKLCILPSSI+I
Sbjct: 1   MASFQSFNFETEIPQELLISQIMQIHTTISKLESLRPSKQVNTLLTHLVKLCILPSSIEI 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
           +ALPQEV+ MR+SLI +C +AE LLELEF+T++S+   P  +L  FPYY NYVKLA  E 
Sbjct: 61  EALPQEVKTMRESLIPICGKAEGLLELEFSTFISQTPNPAKNLTLFPYYGNYVKLANYEN 120

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             L EN GV   KKVAF+GSGPMPL+SIILA+ HM+STHFDN DIDE AN +A +IV+SD
Sbjct: 121 KILKEN-GVVDAKKVAFIGSGPMPLSSIILATHHMESTHFDNFDIDEKANEVASKIVASD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
             +EKRMKF+T  IME KE+LG+YDCI LAAL G    EK KILGHI KYMKEG VLLVR
Sbjct: 180 KALEKRMKFVTQYIMEAKERLGQYDCIFLAALVGMRRSEKVKILGHISKYMKEGSVLLVR 239

Query: 240 SAKGARAFLYPVV-EHELFDFKVLSIFHPTNDVINSVVLLQLPK 282
           SAKG+RAFLYP+V E+++ +F+ L+IFHPT+D INSV+  + PK
Sbjct: 240 SAKGSRAFLYPIVEENDMVNFEGLTIFHPTDDDINSVIFFRKPK 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500282|ref|XP_004161056.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 176/279 (63%), Positives = 221/279 (79%), Gaps = 3/279 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MA+ Q    + +I   FL+ RI+ +H SISKLE+LRP K+VN LF++LV LCILP SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
             LP  +Q +R+SLIILC +AE LLELEF+T LSKI  PLN+L  FPYY+NY+KLA LE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLE- 119

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             ++ + G+   KKVAFVGSGP+PLTSII+A QHMK THFDN D+D  AN++AR+IV SD
Sbjct: 120 NKILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            ++E RMKF + DI++VKE+LG YDC+ LAAL G N+EEK KI+ H+RKYMKEGG+LLVR
Sbjct: 180 SDLEGRMKFFSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVR 239

Query: 240 SAKGARAFLYPVVEHE-LFDFKVLSIFHPTNDVINSVVL 277
           SAKG RAFLYPVVE E L  F++LSIFHPT+DV+NSV+L
Sbjct: 240 SAKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVIL 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457247|ref|XP_004146360.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 176/279 (63%), Positives = 221/279 (79%), Gaps = 3/279 (1%)

Query: 1   MASHQNLNFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDI 60
           MA+ Q    + +I   FL+ RI+ +H SISKLE+LRP K+VN LF++LV LCILP SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  KALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEY 120
             LP  +Q +R+SLIILC +AE LLELEF+T LSKI  PLN+L  FPYY+NY+KLA LE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLE- 119

Query: 121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD 180
             ++ + G+   KKVAFVGSGP+PLTSII+A QHMK THFDN D+D  AN++AR+IV SD
Sbjct: 120 NKILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSD 179

Query: 181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVR 239
            ++E RMKF + DI++VKE+LG YDC+ LAAL G N+EEK KI+ H+RKYMKEGG+LLVR
Sbjct: 180 SDLEGRMKFCSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVR 239

Query: 240 SAKGARAFLYPVVEHE-LFDFKVLSIFHPTNDVINSVVL 277
           SAKG RAFLYPVVE E L  F++LSIFHPT+DV+NSV+L
Sbjct: 240 SAKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVIL 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450591|ref|XP_002282175.1| PREDICTED: nicotianamine synthase [Vitis vinifera]

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 188/264 (71%), Gaps = 3/264 (1%)

Query: 16  EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLI 75
           E L+ ++ +++  IS+LESL+PSK VN+LF+ LV+ C+ PS ID+  L + VQ+MR  LI
Sbjct: 6   ELLVEKVCEMYEKISRLESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  ILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKV 135
            LC  AE LLE  F+T L     PL+ LN FPYY NY+KL+ LE+  L +N       K+
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVP-SKI 124

Query: 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195
           AFVGSGP+PLTSI+LAS H+ +T F N DID  AN++A  +VSSD +  KRM F T DIM
Sbjct: 125 AFVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPDFSKRMLFHTTDIM 184

Query: 196 EVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH 254
            V  +L EYD + LAAL G ++EEK +++ H+ K+M  G +L++RSA GARAFLYPV++ 
Sbjct: 185 NVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSAHGARAFLYPVIDP 244

Query: 255 -ELFDFKVLSIFHPTNDVINSVVL 277
            +L  F+VLSIFHPT++VINSVV+
Sbjct: 245 CDLRGFEVLSIFHPTDEVINSVVV 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778256|emb|CAN65138.1| hypothetical protein VITISV_020491 [Vitis vinifera]

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 187/264 (70%), Gaps = 3/264 (1%)

Query: 16  EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLI 75
           E L+ ++ +++  IS+ ESL+PSK VN+LF+ LV+ C+ PS ID+  L + VQ+MR  LI
Sbjct: 6   ELLVEKVCEMYEKISRFESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  ILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKV 135
            LC  AE LLE  F+T L     PL+ LN FPYY NY+KL+ LE+  L +N       K+
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVP-SKI 124

Query: 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195
           AFVGSGP+PLTSI+LAS H+ +T F N DID  AN++A  +V+SD +  KRM F T DIM
Sbjct: 125 AFVGSGPLPLTSIVLASYHLTTTTFHNYDIDPAANSMAAHLVASDPDFSKRMLFHTTDIM 184

Query: 196 EVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH 254
            V  +L EYD + LAAL G ++EEK +++ H+ KYM  G +L++RSA GARAFLYPV++ 
Sbjct: 185 NVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKYMAPGALLMLRSAHGARAFLYPVIDP 244

Query: 255 -ELFDFKVLSIFHPTNDVINSVVL 277
            +L  F+VLSIFHPT++VINSVV+
Sbjct: 245 CDLRGFEVLSIFHPTDEVINSVVV 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2195301	320	NAS3 "AT1G09240" [Arabidopsis	0.484	0.809	0.528	2.3e-64
TAIR|locus:2010718	324	NAS4 "nicotianamine synthase 4	0.493	0.814	0.470	2.1e-61
TAIR|locus:2161770	320	NAS2 "AT5G56080" [Arabidopsis	0.478	0.8	0.480	1.9e-58
TAIR|locus:2175304	320	NAS1 "AT5G04950" [Arabidopsis	0.478	0.8	0.467	6.6e-58

TAIR|locus:2195301 NAS3 "AT1G09240" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 139/263 (52%), Positives = 184/263 (69%)

Query:    16 EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS-SIDIKALPQEVQQMRQSL 74
             E L+  I  ++  ISKLESL+PS+ VNILF  LV  CI P+ +ID+  +   VQ++R +L
Sbjct:     6 EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query:    75 IILCARAESLLELEFATYLSKIS-LPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLK 133
             I +C  AE  LE  F++ L+     PL+ LN FPYY NY+KL KLE+  L +N      K
Sbjct:    66 IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFVPK 125

Query:   134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD 193
              VAF+GSGP+PLTSI+LAS H+K T F N DID +AN+LA  +VSSD +I +RM F T D
Sbjct:   126 SVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTVD 185

Query:   194 IMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV 252
             IM+V E L  +D + LAAL G N+EEK K++ H++K+M  G VL++RSA G RAFLYP+V
Sbjct:   186 IMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPIV 245

Query:   253 EH-ELFDFKVLSIFHPTNDVINS 274
             E  +L  F+VLSI+HPT+DVINS
Sbjct:   246 EPCDLQGFEVLSIYHPTDDVINS 268

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2010718 NAS4 "nicotianamine synthase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 126/268 (47%), Positives = 185/268 (69%)

Query:    11 GQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPS-SIDIKALPQEVQQ 69
             G    + L+ +I  ++  ISKLE+L+P + V+ LF  LV  CI P+ +ID+  + + +Q+
Sbjct:     2 GYCQDDQLVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQE 61

Query:    70 MRQSLIILCARAESLLELEFATYLSKIS-LPLNDLNRFPYYENYVKLAKLEYGALIENTG 128
             MR +LI +C  AE  LE  F++ L+     PL+ LN FPYY NY+KL+KLE+  L +N  
Sbjct:    62 MRSNLIKICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLN 121

Query:   129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK 188
                 + VAF+GSGP+PLTS++LAS H+K + F N DID +AN +A R+VSSD ++ +RM 
Sbjct:   122 GFVPRTVAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMF 181

Query:   189 FLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAF 247
             F T DIM+V E L  +D + LAAL G +++EK K++ H+ K+M  G +L++RSA G RAF
Sbjct:   182 FHTVDIMDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAF 241

Query:   248 LYPVVEH-ELFDFKVLSIFHPTNDVINS 274
             LYP+VE  +L  F+VLS++HPT++VINS
Sbjct:   242 LYPIVEPCDLEGFEVLSVYHPTDEVINS 269

GO:0005634 "nucleus" evidence=ISM

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IGI

GO:0030418 "nicotianamine biosynthetic process" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2161770 NAS2 "AT5G56080" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 126/262 (48%), Positives = 173/262 (66%)

Query:    18 LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCI-LPSSIDIKALPQE-VQQMRQSLI 75
             ++ +IM ++  IS LESL+PSK V+ LF  LV  C+   ++ID+  +  E V+ MR  LI
Sbjct:     8 VVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHLI 67

Query:    76 ILCARAESLLELEFATYLSKIS-LPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKK 134
              LC  AE  LE  F+  L      PLN L+ FPYY NY+KL KLE+  L ++T     K 
Sbjct:    68 KLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLLSQHTTHVPTK- 126

Query:   135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI 194
             VAF+GSGPMPLTSI+LA  H+ +T F N DID  AN LA  +VS D ++ KRM F T D+
Sbjct:   127 VAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLSKRMIFHTTDV 186

Query:   195 MEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVE 253
             +  KE L +YD + LAAL G ++E K K + H+ K+M  G V+++RSA G RAFLYP+V+
Sbjct:   187 LNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHGLRAFLYPIVD 246

Query:   254 H-ELFDFKVLSIFHPTNDVINS 274
               +L  F+VL+I+HP++DV+NS
Sbjct:   247 SCDLKGFEVLTIYHPSDDVVNS 268

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP;RCA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2175304 NAS1 "AT5G04950" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 123/263 (46%), Positives = 176/263 (66%)

Query:    18 LIARIMQIHASISKLESLRPSKQVNILFSHLVKLCI-LPSSIDIKALPQEVQQMRQSLII 76
             ++ +I+ ++  ISKL+SL+PSK V+ LF  LV  C+   ++ID+  + +EV+ MR +LI 
Sbjct:     8 VVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCEEVKDMRANLIK 67

Query:    77 LCARAESLLELEFATYLSKISL---PLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLK 133
             LC  AE  LE  F+T L  +     PL+ L+ FPYY NY+KL KLE+  L +++     K
Sbjct:    68 LCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQHSSHVPTK 127

Query:   134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD 193
              +AFVGSGPMPLTSI+LA  H+ +T F N DID  AN LA  +VS D ++ KRM F T D
Sbjct:   128 -IAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRMIFHTTD 186

Query:   194 IMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV 252
             ++   E L +YD + LAAL G ++E K K + H+ K+M  G VL++RSA   RAFLYP+V
Sbjct:   187 VLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYPIV 246

Query:   253 EH-ELFDFKVLSIFHPTNDVINS 274
             +  +L  F++L+I+HPT+DV+NS
Sbjct:   247 DSSDLKGFQLLTIYHPTDDVVNS 269


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      535       501   0.00085  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  261 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.69u 0.09s 47.78t   Elapsed:  00:00:02
  Total cpu time:  47.69u 0.09s 47.78t   Elapsed:  00:00:02
  Start:  Fri May 10 02:21:47 2013   End:  Fri May 10 02:21:49 2013

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!
3rd Layer	2.5.1.43	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
PLN03075	296	PLN03075, PLN03075, nicotianamine synthase; Provis	1e-143
pfam03059	277	pfam03059, NAS, Nicotianamine synthase protein	1e-105
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.001

>gnl|CDD|178624 PLN03075, PLN03075, nicotianamine synthase; Provisional

 Score =  412 bits (1062), Expect = e-143
 Identities = 148/279 (53%), Positives = 198/279 (70%), Gaps = 3/279 (1%)

Query: 8   NFQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEV 67
           + +     E L+ +I  ++A ISKLESL+PSK+VN LF+ LV  CI PSSID+  L +E+
Sbjct: 1   SEEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEI 60

Query: 68  QQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENT 127
           Q+MR  LI LC  AE LLE  F+T L     PL+ LN FPYY NY+KL+KLE+  L ++ 
Sbjct: 61  QEMRSKLIKLCGEAEGLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQH- 119

Query: 128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM 187
                 KVAFVGSGP+PLTSI+LA  H+ +T F N DID +AN++ARR+VSSD ++ KRM
Sbjct: 120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRM 179

Query: 188 KFLTCDIMEVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARA 246
            F T D+M+V E L EYD + LAAL G ++EEK K++ H+ K+M  G +L++RSA GARA
Sbjct: 180 FFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA 239

Query: 247 FLYPVVEHE-LFDFKVLSIFHPTNDVINSVVLLQLPKDP 284
           FLYPVV+   L  F+VLS+FHPT++VINSV++ + P  P
Sbjct: 240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGP 278

Length = 296

>gnl|CDD|217343 pfam03059, NAS, Nicotianamine synthase protein

 Score =  317 bits (814), Expect = e-105
 Identities = 127/266 (47%), Positives = 184/266 (69%), Gaps = 3/266 (1%)

Query: 16  EFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLI 75
           E L+ +I+ ++A+ISKL SL PS  VN LF+ LV  CI PS +D+  L  E+Q++R  LI
Sbjct: 7   EALVEKILDLYAAISKLPSLSPSPDVNALFTQLVTTCIPPSPVDVTKLGPEIQEIRSLLI 66

Query: 76  ILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKV 135
            LC+ AE LLE  ++  L+    PL+ L  FPYY+NY+KL+KLEY  L  +       ++
Sbjct: 67  RLCSTAEGLLESHYSDILAAFDNPLDHLEIFPYYKNYLKLSKLEYDLLSRHVT-GVPSRI 125

Query: 136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM 195
           AF+GSGP+PLTS++LAS H+  T FDN DI   AN+ A ++VS+D ++  RM F T D++
Sbjct: 126 AFIGSGPLPLTSLVLASYHLPDTSFDNYDICGLANDRASKLVSADGDLSSRMSFHTADVL 185

Query: 196 EVKEKLGEYDCIILAALAG-NEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH 254
           +V  +L  YD + LAAL G ++EEKAK++ H+ K+M  G  L++RSA GARAFLYPVV+ 
Sbjct: 186 DVTTELKAYDVVFLAALVGMDKEEKAKVIDHLGKHMAPGAALVLRSAHGARAFLYPVVDP 245

Query: 255 E-LFDFKVLSIFHPTNDVINSVVLLQ 279
             L  F+VL+++HP ++VINSV++ +
Sbjct: 246 CDLRGFEVLAVYHPEDEVINSVIIAR 271

Nicotianamine synthase EC:2.5.1.43 catalyzes the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold. Length = 277

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 139 GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK 198
           G+G    +  I  ++         +D+      LAR        +  R+ F+  D  +  
Sbjct: 11  GTG----SLAIELARLFPGARVTGVDLSPEMLELARENAKLA--LGPRITFVQGDAPDAL 64

Query: 199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV 238
           + L  +D +    + G   +  ++L  +   +K GG L++
Sbjct: 65  DLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 163 IDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE-YDCIIL-AALAGNEEEKA 220
           +DI   A  LAR+       +   ++ L  D  E+  +  E +D II    L    E+ A
Sbjct: 27  VDISPVALELARKAA--AALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLA 84

Query: 221 KILGHIRKYMKEGGVLLV 238
           + L   R+ +K GGVL++
Sbjct: 85  RFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 147 SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE--- 203
           + ILA +         IDI E A   A+          + ++F+  DI E+ +   E   
Sbjct: 18  TFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY--ENVEFIQGDIEELPQLQLEDNS 75

Query: 204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLS 263
           +D +I   +  +  +  K+L  I + +K GGVL+V            + + E     VL 
Sbjct: 76  FDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPALLEDLERLYAGVLE 135

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR-RIVSSDDEIEKRMKFLTCDIME 196
           +G G   L   +L +       +  +DI   A   A  R+ +       R++    D ++
Sbjct: 3   IGCGTGTLLRALLEALP--GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVL 236
                G +D ++ + +  +  +   +L ++R+ +K GGVL
Sbjct: 61  --LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PLN03075	296	nicotianamine synthase; Provisional	100.0
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	99.74
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.72
PLN02476	278	O-methyltransferase	99.68
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.67
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.67
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.64
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.64
PLN02244	340	tocopherol O-methyltransferase	99.63
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.62
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.58
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.53
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.52
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.52
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.51
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.51
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.5
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.5
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.49
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.48
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.47
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.47
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.46
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.46
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.46
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.46
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.45
PRK11207	197	tellurite resistance protein TehB; Provisional	99.44
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.44
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.43
PRK08317	241	hypothetical protein; Provisional	99.43
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.41
PRK04457	262	spermidine synthase; Provisional	99.41
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.41
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.4
PRK07402	196	precorrin-6B methylase; Provisional	99.4
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.39
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.38
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.37
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.36
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.36
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.35
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.34
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.33
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.32
PRK12335	287	tellurite resistance protein TehB; Provisional	99.32
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.31
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.31
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.31
PRK06922	677	hypothetical protein; Provisional	99.31
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.3
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.3
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.27
PRK04266	226	fibrillarin; Provisional	99.26
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.26
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.26
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.26
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.25
PLN02490	340	MPBQ/MSBQ methyltransferase	99.25
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.23
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.23
TIGR03438	301	probable methyltransferase. This model represents	99.22
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.21
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.21
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.21
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.21
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.19
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.19
PRK00811	283	spermidine synthase; Provisional	99.19
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.19
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.18
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.18
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.17
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.17
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.17
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.17
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.17
PLN02366	308	spermidine synthase	99.16
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.15
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.15
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.15
PRK05785	226	hypothetical protein; Provisional	99.15
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.14
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.14
PLN02336	475	phosphoethanolamine N-methyltransferase	99.14
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.13
PRK14968	188	putative methyltransferase; Provisional	99.13
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.12
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.11
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.11
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.11
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.11
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.1
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.09
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.09
PRK01581	374	speE spermidine synthase; Validated	99.08
TIGR00438	188	rrmJ cell division protein FtsJ.	99.07
PRK06202	232	hypothetical protein; Provisional	99.06
PRK14967	223	putative methyltransferase; Provisional	99.05
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.05
COG4123	248	Predicted O-methyltransferase [General function pr	99.04
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.04
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.03
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.03
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.02
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.01
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.99
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.98
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.96
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.96
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.95
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.95
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.93
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.88
PLN02823	336	spermine synthase	98.88
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.88
KOG4300	252	consensus Predicted methyltransferase [General fun	98.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.87
PTZ00146	293	fibrillarin; Provisional	98.87
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.86
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.86
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.85
COG2890	280	HemK Methylase of polypeptide chain release factor	98.85
PRK03612	521	spermidine synthase; Provisional	98.85
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.84
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.83
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.82
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.77
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.76
KOG1271	227	consensus Methyltransferases [General function pre	98.76
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.74
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.72
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.7
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.7
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.69
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.68
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.65
PLN02672	1082	methionine S-methyltransferase	98.61
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.6
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.58
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.53
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.52
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.52
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.49
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.48
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.47
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.42
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.41
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.4
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.39
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.38
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.37
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.37
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.36
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.36
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.35
PHA03411	279	putative methyltransferase; Provisional	98.35
COG2521	287	Predicted archaeal methyltransferase [General func	98.34
KOG3010	261	consensus Methyltransferase [General function pred	98.34
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.33
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.33
PRK00536	262	speE spermidine synthase; Provisional	98.32
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.32
KOG2899	288	consensus Predicted methyltransferase [General fun	98.3
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.3
PRK04148	134	hypothetical protein; Provisional	98.28
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.28
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.24
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.24
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.23
KOG2904	328	consensus Predicted methyltransferase [General fun	98.21
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.2
PHA03412	241	putative methyltransferase; Provisional	98.18
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.17
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.16
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.15
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.13
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.11
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.1
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.09
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.09
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.08
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.06
KOG2361	264	consensus Predicted methyltransferase [General fun	98.05
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.05
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.04
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.03
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.02
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.02
COG2520	341	Predicted methyltransferase [General function pred	98.01
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.85
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.82
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.81
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.79
KOG2730	263	consensus Methylase [General function prediction o	97.78
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.78
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.76
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.75
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.74
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.72
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.71
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.7
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.69
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.67
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.62
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.61
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.59
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.57
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.52
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.52
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	97.48
COG4076	252	Predicted RNA methylase [General function predicti	97.42
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.41
PRK10742	250	putative methyltransferase; Provisional	97.4
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.39
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.39
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.39
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.35
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.32
PF13679	141	Methyltransf_32: Methyltransferase domain	97.3
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.25
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.22
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.18
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.17
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.14
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.13
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.13
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.12
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.08
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.03
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.99
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.94
COG3897	218	Predicted methyltransferase [General function pred	96.91
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.9
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.86
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.82
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.79
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.78
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.67
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.65
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	96.64
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.63
PLN02740	381	Alcohol dehydrogenase-like	96.61
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.55
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.55
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.48
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.42
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.34
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.33
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.31
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.29
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.28
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.27
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.26
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.22
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.21
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.21
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.15
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.13
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.1
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.1
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.09
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.07
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.03
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.01
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.98
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.93
PLN02827	378	Alcohol dehydrogenase-like	95.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.89
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.89
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.88
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.86
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.85
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.85
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.81
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.8
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.78
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	95.78
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.72
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.72
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	95.68
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.65
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.65
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.65
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.53
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.51
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.46
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.44
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.42
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.4
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.4
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.38
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.28
KOG2940	325	consensus Predicted methyltransferase [General fun	95.28
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	95.26
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.23
PRK07417	279	arogenate dehydrogenase; Reviewed	95.18
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	95.17
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.15
KOG1331	293	consensus Predicted methyltransferase [General fun	95.13
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.05
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.92
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	94.91
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.89
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.87
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.81
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.72
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	94.7
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.66
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.65
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.62
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.59
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.57
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.56
PLN02494	477	adenosylhomocysteinase	94.53
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.52
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	94.48
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	94.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.45
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.43
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.4
PRK10083	339	putative oxidoreductase; Provisional	94.33
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.3
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.26
PRK08507	275	prephenate dehydrogenase; Validated	94.23
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.22
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	94.19
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	94.14
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	94.08
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.04
PLN02256	304	arogenate dehydrogenase	94.04
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.02
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	93.93
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.88
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	93.87
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.85
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.82
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	93.81
PRK05225	487	ketol-acid reductoisomerase; Validated	93.74
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	93.69
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.68
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.59
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.58
PRK09496	453	trkA potassium transporter peripheral membrane com	93.56
PRK15076	431	alpha-galactosidase; Provisional	93.44
PLN02688	266	pyrroline-5-carboxylate reductase	93.41
PHA01634	156	hypothetical protein	93.4
PRK08655	437	prephenate dehydrogenase; Provisional	93.38
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	93.27
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	93.26
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	93.22
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.21
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.2
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	93.19
PTZ00075	476	Adenosylhomocysteinase; Provisional	93.16
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.14
PRK13403	335	ketol-acid reductoisomerase; Provisional	93.14
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.03
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.01
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.01
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	92.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.89
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	92.87
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	92.85
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	92.82
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.82
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	92.81
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	92.8
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.65
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.54
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	92.48
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.46
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.43
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	92.42
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.31
PRK06223	307	malate dehydrogenase; Reviewed	92.22
PLN02702	364	L-idonate 5-dehydrogenase	92.2
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	92.18
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	92.16
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.12
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	92.03
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.02
PRK10669	558	putative cation:proton antiport protein; Provision	92.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	91.99
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.98
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.95
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.93
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	91.9
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.8
KOG3115	249	consensus Methyltransferase-like protein [General	91.78
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	91.74
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	91.72
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	91.67
PRK06545	359	prephenate dehydrogenase; Validated	91.64
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.6
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	91.57
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	91.54
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	91.52
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	91.48
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	91.43
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.34
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	91.34
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	91.3
PRK09496	453	trkA potassium transporter peripheral membrane com	91.28
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	91.2
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	91.2
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	91.19
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.16
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.16
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	91.14
PTZ00117	319	malate dehydrogenase; Provisional	91.04
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	90.98
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	90.94
COG4798	238	Predicted methyltransferase [General function pred	90.86
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.85
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.8
COG3129	292	Predicted SAM-dependent methyltransferase [General	90.78
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	90.73
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	90.63
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	90.6
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	90.56
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.52
COG4301	321	Uncharacterized conserved protein [Function unknow	90.39
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	90.39
PLN02712	667	arogenate dehydrogenase	90.28
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.25
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.17
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	90.13
PRK12480	330	D-lactate dehydrogenase; Provisional	90.12
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	90.12
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	90.02
PRK13243	333	glyoxylate reductase; Reviewed	90.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	89.99
PRK13771	334	putative alcohol dehydrogenase; Provisional	89.99
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	89.95
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.92
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	89.84
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	89.73
PTZ00354	334	alcohol dehydrogenase; Provisional	89.73
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	89.69
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	89.68
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	89.68
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.66
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.57
PRK08324	681	short chain dehydrogenase; Validated	89.57
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.47
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	89.45
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	89.44
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.41
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	89.37
PRK08818	370	prephenate dehydrogenase; Provisional	89.36
PLN02712	667	arogenate dehydrogenase	89.35
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.34
PRK05442	326	malate dehydrogenase; Provisional	89.31
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	89.14
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	89.13
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	89.09
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	89.08
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.0
PRK05479	330	ketol-acid reductoisomerase; Provisional	88.97
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	88.95
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.92
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	88.85
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	88.74
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.7
PRK07680	273	late competence protein ComER; Validated	88.65
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	88.62
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	88.57
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	88.56
cd08252	336	AL_MDR Arginate lyase and other MDR family members	88.55
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	88.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.46
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	88.31
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	88.25
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.24
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	88.18
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	88.16
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	88.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	87.93
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	87.86
PRK06141	314	ornithine cyclodeaminase; Validated	87.82
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.77
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.76
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	87.7
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	87.63

>PLN03075 nicotianamine synthase; Provisional

Probab=100.00  E-value=2e-69  Score=546.58  Aligned_cols=271  Identities=54%  Similarity=0.870  Sum_probs=258.3

Q ss_pred             cCCCCChHHHHHHHHHHHHHHccCCCCCCchhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhH
Q 041205            9 FQGQIPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELE   88 (535)
Q Consensus         9 ~~~~i~~e~LI~~I~~ly~~Is~L~sL~PS~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h   88 (535)
                      ....+++|.+|++|+++|++|++|++|+||++||+||++||++|+++.++|++.+++++|+|++.||++|++||++||.|
T Consensus         2 ~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~   81 (296)
T PLN03075          2 EEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAH   81 (296)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh
Q 041205           89 FATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET  168 (535)
Q Consensus        89 ~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe  168 (535)
                      ||+.|++.++||++|+.||||+||++|++.|+..+..+.. .++++|+||||||+|+|+++++.+++|+++|+|||+|++
T Consensus        82 ~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~  160 (296)
T PLN03075         82 FSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS  160 (296)
T ss_pred             HHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence            9999999999999999999999999999999999988766 489999999999999999999988899999999999999


Q ss_pred             HHHHHHHHHhh-cCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEccccccc
Q 041205          169 ANNLARRIVSS-DDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSAKGARA  246 (535)
Q Consensus       169 AIelAR~li~~-lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~  246 (535)
                      +++.||+++++ .| +.++|+|+++|+.+....+++||+||++++++| .++|.+++++++++|+|||+|++|++||+|+
T Consensus       161 ai~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~  239 (296)
T PLN03075        161 ANDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA  239 (296)
T ss_pred             HHHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh
Confidence            99999999965 77 889999999999987555678999999999998 8999999999999999999999999999999


Q ss_pred             ccCCCCcc-ccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205          247 FLYPVVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       247 fLYP~Vdp-dl~GFeil~v~hP~~eVINSVVvARK~  281 (535)
                      |+||+|++ ++.||+++.++||+++|+|||||+||.
T Consensus       240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~  275 (296)
T PLN03075        240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKP  275 (296)
T ss_pred             hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEee
Confidence            99999999 889999999999999999999999995

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=100.00  E-value=4.2e-69  Score=539.70  Aligned_cols=267  Identities=51%  Similarity=0.800  Sum_probs=166.5

Q ss_pred             CChHHHHHHHHHHHHHHccCCCCCCchhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhHHHhH
Q 041205           13 IPGEFLIARIMQIHASISKLESLRPSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATY   92 (535)
Q Consensus        13 i~~e~LI~~I~~ly~~Is~L~sL~PS~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h~A~~   92 (535)
                      .++|.+|++|+++|++|++|+||+|||+||+||++||.+|+++++.|++.++|++++++++||++|++||++||.|||+.
T Consensus         3 ~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~   82 (276)
T PF03059_consen    3 KEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR   82 (276)
T ss_dssp             ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH
Q 041205           93 LSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL  172 (535)
Q Consensus        93 Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel  172 (535)
                      |+++++||++|+.||||+||++|+++|++.+....+ ..|+||+||||||+|+|+|+||++|.+++.|+|||+|++|+++
T Consensus        83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~-~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~  161 (276)
T PF03059_consen   83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAG-DPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL  161 (276)
T ss_dssp             HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--T-T---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred             HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCC-cccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            999999999999999999999999999999887655 4678999999999999999999978889999999999999999


Q ss_pred             HHHHHh-hcCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEcccccccccCC
Q 041205          173 ARRIVS-SDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYP  250 (535)
Q Consensus       173 AR~li~-~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP  250 (535)
                      |+++++ ..| ++++|+|+++|+.++..++.+||+||++++||| .++|.++|+++.++|+||++|++|+++|+|+|+||
T Consensus       162 a~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp  240 (276)
T PF03059_consen  162 ARRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP  240 (276)
T ss_dssp             HHHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred             HHHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence            999999 566 889999999999998888889999999999999 99999999999999999999999999999999999


Q ss_pred             CCcc-ccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205          251 VVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       251 ~Vdp-dl~GFeil~v~hP~~eVINSVVvARK~  281 (535)
                      ++++ ++.||+++.++||+++|+|||||+||.
T Consensus       241 ~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~  272 (276)
T PF03059_consen  241 VVDPEDLRGFEVLAVVHPTDEVINSVVFARKK  272 (276)
T ss_dssp             ---TGGGTTEEEEEEE---TT---EEEEE---
T ss_pred             CCChHHCCCeEEEEEECCCCCceeEEEEEEec
Confidence            9999 889999999999999999999999995

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.74  E-value=6.8e-18  Score=165.62  Aligned_cols=135  Identities=20%  Similarity=0.377  Sum_probs=111.9

Q ss_pred             cccccCccchhhHHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205          101 NDLNRFPYYENYVKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS  179 (535)
Q Consensus       101 ~~L~~FpYy~NYv~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~  179 (535)
                      ..++.|.+ .+-.+.+..|-..|.. .+.+.++++|||||++ +|||++|||.....++++++||+|+++++.|++++++
T Consensus        29 ~~~~e~a~-~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~  106 (219)
T COG4122          29 AELEEFAR-ENGVPIIDPETGALLRLLARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAE  106 (219)
T ss_pred             HHHHHHhH-hcCCCCCChhHHHHHHHHHHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            34455555 3334444355544444 4467899999999998 8999999999544388999999999999999999999


Q ss_pred             cCCcCCCeEEEE-ccccccccC--CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          180 DDEIEKRMKFLT-CDIMEVKEK--LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       180 lG~Ls~rI~Fi~-GDA~el~~d--L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +| ++++|+++. ||+.+....  .+.||+||+|+.+   .++..+|+.+.+.|+|||+++++|.
T Consensus       107 ag-~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         107 AG-VDDRIELLLGGDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             cC-CcceEEEEecCcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence            99 889999999 699887775  3679999999999   6999999999999999999999996

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.73  E-value=7.4e-18  Score=163.19  Aligned_cols=120  Identities=18%  Similarity=0.292  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..+-..|..++.+..+++||||||| .|||+++||+...++++|++||+|++..+.|++++++.| ++++|+++.||+.+
T Consensus        31 ~~~g~lL~~l~~~~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~  108 (205)
T PF01596_consen   31 PETGQLLQMLVRLTRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALE  108 (205)
T ss_dssp             HHHHHHHHHHHHHHT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHH
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHh
Confidence            3344444444556789999999998 799999999955568999999999999999999999999 88999999999987


Q ss_pred             cccCC------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKL------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +...+      +.||+||+|+.+   .+|..+++.+.+.|+|||++++++.
T Consensus       109 ~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  109 VLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             hHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence            65422      469999999998   6999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.72  E-value=3.8e-17  Score=138.03  Aligned_cols=107  Identities=23%  Similarity=0.352  Sum_probs=88.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      |+.+|||||||+ |..++.+++ ..++++|+|||+|+++++.|++.+...+ ..++|+|+++|+.........||+|++.
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEEC
Confidence            578999999996 777788877 4689999999999999999999997777 6799999999992122333569999998


Q ss_pred             c-ccC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 A-LAG-N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 A-LVg-m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      . ..+ +  .+++.++++.+++.|+|||+|++.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            7 221 2  3688999999999999999999874

...

>PLN02476 O-methyltransferase

Probab=99.68  E-value=1.6e-16  Score=160.71  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .+...+..+..+.++++||||||| .|+|++++|....++++|+++|+|+++++.|++++++.| +.++|+++.||+.+.
T Consensus       105 ~~g~lL~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~  182 (278)
T PLN02476        105 DQAQLLAMLVQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHH
Confidence            334444445567889999999998 699999999854558899999999999999999999999 889999999999886


Q ss_pred             ccCC------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KEKL------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~dL------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +..+      +.||+||+++.+   .++..+++.+.+.|+|||+|++++.
T Consensus       183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence            6433      469999999888   6899999999999999999999996

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.67  E-value=3.5e-16  Score=155.70  Aligned_cols=120  Identities=15%  Similarity=0.171  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..+-..+..++...++++|||||++ .|||+++||....++++|+++|+|++..+.|+++++++| +.++|+++.||+.+
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e  142 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHH
Confidence            3444555555566789999999998 799999999965578999999999999999999999999 88999999999988


Q ss_pred             cccCC-------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKL-------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL-------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+..+       +.||+||+|+.+   ..|..+++.+.+.|+|||+|++++.
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            76543       479999999998   6899999999999999999999986

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.67  E-value=4.2e-16  Score=152.72  Aligned_cols=115  Identities=16%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-  200 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-  200 (535)
                      .+..+..+.++++||||||| .|+|+++||....++++|+++|+|+++++.|++++++.| ++++|+++.||+.+.... 
T Consensus        59 ~L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         59 FLSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHH
Confidence            33334456789999999999 699999999854557899999999999999999999999 889999999999876543 


Q ss_pred             -----CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 -----LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 -----L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                           .+.||+||+++.+   +.+..+++.+.+.|+|||+|++.+.
T Consensus       137 ~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             HhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence                 2469999999887   7899999999999999999999885

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.64  E-value=8.3e-16  Score=151.12  Aligned_cols=112  Identities=17%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++.+|||||||+ |-.++.++++..++++|+|+|++++|++.|++.+...| . .+|+|+++|+.+++++.+.||+
T Consensus        43 ~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~-~~i~~v~~da~~lp~~d~sfD~  119 (233)
T PF01209_consen   43 LGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-L-QNIEFVQGDAEDLPFPDNSFDA  119 (233)
T ss_dssp             HT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEE
T ss_pred             cCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-C-CCeeEEEcCHHHhcCCCCceeE
Confidence            3447899999999996 67778888855678999999999999999999999988 4 4999999999999998888999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++..+...+++.+.+++++|+|||||++++-+.
T Consensus       120 v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  120 VTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            99876665568899999999999999999988663

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=1.5e-15  Score=150.68  Aligned_cols=108  Identities=21%  Similarity=0.297  Sum_probs=97.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..+|.+|||||||+ |--++.+++. .+.++|+++|+++.|++.|++.....| ... |+|+.|||.++|++++.||+|.
T Consensus        49 ~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~vt  124 (238)
T COG2226          49 IKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAVT  124 (238)
T ss_pred             CCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEEE
Confidence            35899999999996 7777888884 558999999999999999999999988 544 9999999999999999999999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++......+++.++|++++|+|||||++++-.
T Consensus       125 ~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226         125 ISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             eeehhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence            98766556899999999999999999998866

>PLN02244 tocopherol O-methyltransferase

Probab=99.63  E-value=4.6e-15  Score=152.25  Aligned_cols=107  Identities=16%  Similarity=0.279  Sum_probs=92.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|||||||+ |..++.+++.  .|++|+|||+++.+++.|+++++..| +.++++|+++|+.++++..+.||+|+.
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEE
Confidence            5789999999996 6677788883  38999999999999999999999888 678999999999988877788999997


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+..+++.+++.+++++|||||.|++-+
T Consensus       193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        193 MESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5443335789999999999999999998854

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.62  E-value=4.5e-15  Score=133.85  Aligned_cols=110  Identities=23%  Similarity=0.378  Sum_probs=93.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      +.+.+|||+|||+ |..++.+++...++++|+|||+|+++++.|++.+++.| +. +++|+++|+.+++..+ +.||+|+
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence            4689999999995 77778888546789999999999999999999999999 64 9999999999855212 6899999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      .....+...+...+++.+.+.|++||++++.+..
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9866544578899999999999999999998764

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.58  E-value=2.7e-14  Score=136.27  Aligned_cols=113  Identities=18%  Similarity=0.210  Sum_probs=94.9

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..+.+.++++|||||||+ |..++.+++...++++|+|+|+++++++.|++.+...+ + ++++++++|+.+++...+.|
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCc
Confidence            344567889999999996 66777888744577899999999999999999998887 5 68999999998876665679


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++...++..+++.++++++.++|+|||.+++.+
T Consensus       116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            999987655555788999999999999999998765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.58  E-value=9.8e-15  Score=117.82  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=80.7

Q ss_pred             EEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC
Q 041205          136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN  215 (535)
Q Consensus       136 LeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm  215 (535)
                      |||||| .|.++..++++  ++.+|+|+|+++++++.+++.....+     +.++++|+.+++.+.+.||+|+.....++
T Consensus         1 LdiG~G-~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~-----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCG-TGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG-----VSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-T-TSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST-----EEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCc-CCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC-----chheeehHHhCccccccccccccccceee
Confidence            799999 48888888883  79999999999999999999887655     45999999999888888999998777655


Q ss_pred             hhhHHHHHHHHHhhcccCeEEEE
Q 041205          216 EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       216 ~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .++..++++++.|+|||||++++
T Consensus        73 ~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 LEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCcCeEEeC
Confidence            58999999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=3.3e-14  Score=141.02  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=91.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCcCCCeEEEEccccccccCCCCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..+.++.+|||||||+ |..++.++++..+.++|+|+|+|++|++.|++....  .+ ...+++|+++|+.+++.+.+.|
T Consensus        69 ~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sf  146 (261)
T PLN02233         69 SGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYF  146 (261)
T ss_pred             hCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCE
Confidence            3456789999999997 666777877434568999999999999999877542  22 2368999999999888877789


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++....+..+++..++.+++|+|||||.+++-+
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            999987665556789999999999999999998865

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.53  E-value=6.5e-14  Score=133.79  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=88.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+|+ ..++++|++||+++++++.|++.++..| +. +++|+++|+.+... .+.||+|++
T Consensus        44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence            4589999999996 788888887 4678999999999999999999999999 64 49999999988655 457999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.    .+...+++.+++.|+|||++++-..
T Consensus       119 ~~~----~~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        119 RAV----ASLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             ccc----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            753    3678999999999999999988643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.53  E-value=7.3e-14  Score=137.33  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=94.1

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++++|||||||+ |..++.+++...++++|+++|+++++++.|++++...| + .+++|+.+|+.+++...+.||+|
T Consensus        74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEE
Confidence            357899999999997 77777777744556789999999999999999999988 5 58999999998877665679999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.....++.+++..++++++++|||||+|++.+
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            987665556789999999999999999999865

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.52  E-value=1.4e-13  Score=134.86  Aligned_cols=126  Identities=15%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             CccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcC
Q 041205          106 FPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIE  184 (535)
Q Consensus       106 FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls  184 (535)
                      .|.|+....++..=.   ...  +.++.+|||||||+ |..++.+++.. .++++|+|||+|++|++.|++.+...| ..
T Consensus        36 ~p~y~~~~~~~~~~~---~~~--~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~  108 (247)
T PRK15451         36 VPGYSNIISMIGMLA---ERF--VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-AP  108 (247)
T ss_pred             CCChHHHHHHHHHHH---HHh--CCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CC
Confidence            466665555543211   111  25789999999996 66666676632 578999999999999999999999888 66


Q ss_pred             CCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          185 KRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       185 ~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+++|+++|+.+++.  ..||+|++....+ + .+++..+++++++.|+|||.|++.+
T Consensus       109 ~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        109 TPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            799999999987654  4699988754443 3 4568899999999999999998865

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=1.2e-13  Score=135.22  Aligned_cols=105  Identities=18%  Similarity=0.276  Sum_probs=90.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVf  208 (535)
                      .++.+|||||||+ |..++.+|+   .|.+|+++|+++++++.|++.+...| +..+++|+++|+.++.. ..+.||+|+
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            5678999999996 677888888   47899999999999999999999988 67899999999987642 345799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +....+..+++..++.++.++|||||+|++-
T Consensus       118 ~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        118 FHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             ehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            8766554567889999999999999999764

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.51  E-value=2.8e-13  Score=128.21  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++++|||||||+ |+.++.+|. ..++++|++||+|+++++.+++++++.| + ++++|+++|+.++. ..+.||+|+..
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence            489999999996 788888886 4678899999999999999999999998 5 46999999998763 34679999987


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      + +   .+...+++.+.+.|+|||++++..
T Consensus       117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       117 A-L---ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             h-h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence            6 4   367789999999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.51  E-value=4.3e-13  Score=114.12  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLG  202 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~  202 (535)
                      ...+.+.++++|+|||||+ |..++.+++ ..++++|+++|+++.+++.|++.++..+ + .+++|+.+|+.+.. ....
T Consensus        12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~   87 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLP   87 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcC
Confidence            3344556788999999997 666777777 4677999999999999999999999888 4 47999999986533 2235


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .||+|++....   ....++++++++.|+|||.|++.
T Consensus        88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        88 EPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEE
Confidence            79999987544   45679999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00740 methyltransferase, putative

Probab=99.50  E-value=3.6e-13  Score=130.29  Aligned_cols=108  Identities=17%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++.+|||||||+ |..++.++++. .|+++|+|+|+++++++.|++.++..+ ...+++|+++|+.+++.  ..||+|+
T Consensus        52 ~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~~~~~--~~~d~v~  127 (239)
T TIGR00740        52 TPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVEI--KNASMVI  127 (239)
T ss_pred             CCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCCC--CCCCEEe
Confidence            4778999999997 66667777743 378999999999999999999998877 56789999999987653  4689888


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +....+.  .+++..+++++++.|+|||.|++.+.
T Consensus       128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            7655544  45789999999999999999999763

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=3e-13  Score=129.32  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=89.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++++|||||||+ |+.+..+|+...++++|+++|+++++++.|++++++.| +.++++|+++|+.+....
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCcc
Confidence            3444445557889999999996 77777887743346799999999999999999999998 667899999999875555


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.||+|++.+...      .+..++.+.|+|||+|++-..
T Consensus       140 ~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        140 HAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence            56799999886652      233577889999999988443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.49  E-value=3.1e-13  Score=134.21  Aligned_cols=113  Identities=22%  Similarity=0.314  Sum_probs=91.7

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++.+|||||||+ |..+..+|+.  .+++|+|+|+++++++.|++.+.. .   .++.|+++|+.+.+.+
T Consensus        42 ~~~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~-~---~~i~~~~~D~~~~~~~  114 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD-K---NKIEFEANDILKKDFP  114 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc-C---CceEEEECCcccCCCC
Confidence            3444445678899999999996 5666777773  478999999999999999987654 2   5799999999877666


Q ss_pred             CCCcceEEec-cccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILA-ALAGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfia-ALVgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|+.. ++.++ ..++..++++++++|||||.|++.+
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6789999984 44455 4589999999999999999999865

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.48  E-value=1.2e-12  Score=123.37  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..++.+|||||||+ |..++.++.. .+ ..+|+++|+++.+++.+++.+...+ +..+++|+.+|+.+.+...+.||+|
T Consensus        49 ~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~I  125 (239)
T PRK00216         49 VRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDAV  125 (239)
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccEE
Confidence            35678999999997 5666677773 34 6899999999999999999988766 5678999999998766555679999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++...++...+...++..+.+.|+|||.+++.+
T Consensus       126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            987655556788999999999999999988754

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.47  E-value=1.9e-13  Score=140.68  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=91.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+|+   .|++|+|||+++++++.|++.++..+ ...+++|+++|+.+++...+.||+|+.
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence            4578999999996 666778887   68999999999999999999877666 557899999999887766567999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...++...+...++.++.++|||||.+++-+.
T Consensus       205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            76665557889999999999999999998754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=3.6e-13  Score=131.74  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+...++.+|||||||+ |..+..+++. .|+++|+|+|+++.+++.|++.         +++|+++|+.++. ..+.||
T Consensus        24 ~l~~~~~~~vLDlGcG~-G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~fD   91 (255)
T PRK14103         24 RVGAERARRVVDLGCGP-GNLTRYLARR-WPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKPDTD   91 (255)
T ss_pred             hCCCCCCCEEEEEcCCC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCCCce
Confidence            34457889999999997 5566777773 5789999999999999999752         3689999998764 446799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++...+++.+++..++.+++++|||||.+++-.
T Consensus        92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence            99998777666788999999999999999998853

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.46  E-value=5.4e-13  Score=134.32  Aligned_cols=127  Identities=20%  Similarity=0.329  Sum_probs=90.4

Q ss_pred             ccchhhHH-hHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205          107 PYYENYVK-LAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE  182 (535)
Q Consensus       107 pYy~NYv~-LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~  182 (535)
                      .||++-.. |-+-+   +..+...+.+.++++||||||| -|..++.+|++  .|++|+||.+|++..+.|++.+++.| 
T Consensus        34 ~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-  109 (273)
T PF02353_consen   34 AYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-  109 (273)
T ss_dssp             ---SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-
T ss_pred             eecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-
Confidence            47766433 22222   3444445578999999999999 68888999995  38999999999999999999999999 


Q ss_pred             cCCCeEEEEccccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+++++..+|..+++.   .||.|+.-... |+ .+++..+++.+.+.|+|||++++..
T Consensus       110 l~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  110 LEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             SSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            89999999999876543   89998854333 55 6789999999999999999998854

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.46  E-value=6.4e-13  Score=128.00  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++++|||||||+ |+.+.++|+...++++|+++|+++++++.|++.++..| + .+++|+++|+.+....
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~~~~  142 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLGYEE  142 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCc
Confidence            3344445668899999999996 77778888743456899999999999999999999999 5 6899999999765555


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.||+||+.+.+.      .+...+.+.|+|||++++-
T Consensus       143 ~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        143 NAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEE
Confidence            56799999886652      2345677789999999884

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.46  E-value=6.6e-13  Score=127.23  Aligned_cols=110  Identities=22%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++.+|||||||+ |+.++.+|+...++++|++||+++++++.|++++++.| + ++++|+++|+.+....
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~  143 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEP  143 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcc
Confidence            3444445668899999999996 67777888843446789999999999999999999999 5 6899999999765544


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ...||+|++++..      ..+.+.+.+.|+|||+|++-
T Consensus       144 ~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       144 LAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             cCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEE
Confidence            5679999987544      33456688899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.46  E-value=8.5e-13  Score=125.00  Aligned_cols=123  Identities=18%  Similarity=0.251  Sum_probs=98.5

Q ss_pred             HHhHHHHHHHHH-HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          113 VKLAKLEYGALI-ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       113 v~LirlE~~lL~-~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      .++++.|...+. ..+.+.++.+|||+|||+ |.-++.+|+...++++|+++|+++++++.|+++++..| +.+++++++
T Consensus        21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~   98 (198)
T PRK00377         21 IPMTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIK   98 (198)
T ss_pred             CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEE
Confidence            346777765553 345678899999999997 66667777644467899999999999999999999998 668999999


Q ss_pred             ccccccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          192 CDIMEVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       192 GDA~el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+.+..... +.||.||+....   .+...+++.+.+.|+|||++++..
T Consensus        99 ~d~~~~l~~~~~~~D~V~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377         99 GEAPEILFTINEKFDRIFIGGGS---EKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             echhhhHhhcCCCCCEEEECCCc---ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            9997754443 569999985433   467889999999999999998854

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.45  E-value=9.1e-13  Score=128.22  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+...+.+.++++|||||||+ |..+..+++. .++++|+|||+++.+++.|++.+       .+++|+.+|+.++. ..
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGP-GNSTELLVER-WPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CC
Confidence            334445557889999999997 5556777773 67899999999999999998763       25789999987654 33


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..||+|+.....++..++..++.++.+.|+|||.+++...
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            5799999887776667889999999999999999988643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=9.9e-13  Score=125.01  Aligned_cols=103  Identities=19%  Similarity=0.295  Sum_probs=85.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||+ |..++.||+   .|.+|+|+|+|+++++.|++.++..| + .+++++++|+.+.+.+ +.||+|+
T Consensus        28 ~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I~  100 (197)
T PRK11207         28 VVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFIL  100 (197)
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEEE
Confidence            45679999999996 778899998   47899999999999999999999888 5 5699999998765443 4699999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .....++  ..+...++..+.+.|+|||.+++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             EecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            7655443  45789999999999999998654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.44  E-value=1.1e-12  Score=127.47  Aligned_cols=120  Identities=17%  Similarity=0.192  Sum_probs=90.3

Q ss_pred             hhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE
Q 041205          110 ENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF  189 (535)
Q Consensus       110 ~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F  189 (535)
                      +.+..+-+.-...+...++..++.+|||||||++ ..+..+++   .+.+|+++|+|+++++.|++...       .+.|
T Consensus        21 ~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~   89 (251)
T PRK10258         21 EQHAELQRQSADALLAMLPQRKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHY   89 (251)
T ss_pred             hHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCE
Confidence            3333333333344444444356789999999985 44556666   57899999999999999987642       2468


Q ss_pred             EEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          190 LTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       190 i~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +++|+.+++...+.||+|+.....++..+...++.++.++|+|||.+++-.
T Consensus        90 ~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258         90 LAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             EEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            999998877666679999987666556788999999999999999999865

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.43  E-value=9.2e-13  Score=125.05  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+...++.+|||||||. |..++.+|+   .|.+|+|+|+|+.+++.+++.++..| +  ++.+..+|+...+.+ +.||
T Consensus        25 ~~~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD   96 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYD   96 (195)
T ss_pred             HhccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCC
Confidence            34445678999999995 888899988   47899999999999999999998888 4  388888887543332 4699


Q ss_pred             eEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+.....+.  .++...+++.+++.|+|||++++-
T Consensus        97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9997644433  467789999999999999985543

Part of a tellurite-reducing operon tehA and tehB

>PRK08317 hypothetical protein; Provisional

Probab=99.43  E-value=1.4e-12  Score=122.05  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=91.1

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+.+.++++|||||||+ |..++.++.++.++++|+|+|+++.+++.|++.....   ..+++|+.+|+.+.+...+.||
T Consensus        14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence            34557889999999997 6666777774337789999999999999999984333   3689999999987666556799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+.....+...+...+++++.+.|+|||.+++-..
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            999876654457889999999999999999988654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.43  E-value=8.1e-13  Score=125.58  Aligned_cols=104  Identities=18%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|||||||. |..++.+|+ .+++++|+|+|+|+++++.|++.+...| +..+++|+.+|+.+.+.+ +.||+|+....
T Consensus         1 ~~vLDiGcG~-G~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGY-GSDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence            4899999996 566677877 4678999999999999999999999999 788999999998654432 46999997655


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+...++..+++.+.++|+|||.+++.+
T Consensus        77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       77 IHHIKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            5445788999999999999999999865

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.41  E-value=2e-12  Score=136.86  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=92.7

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++.+|||||||+ |..++.+|++  .+++|+|+|+|+++++.|++...  + ...+++|+++|+.+.+.+
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~~~  329 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGI-GGGDFYMAEN--FDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKTYP  329 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCCCC
Confidence            3344444557889999999997 5667888883  38899999999999999998875  3 346899999999876655


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|+....+...+++..++.+++++|+|||.|++.+
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            5679999987555445789999999999999999999865

>PRK04457 spermidine synthase; Provisional

Probab=99.41  E-value=1.3e-12  Score=130.22  Aligned_cols=149  Identities=14%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      .++++||+|||| .|..+.++++ +.|+++|++||+|+++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus        65 ~~~~~vL~IG~G-~G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLG-GGSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCC-HhHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            568999999999 5777787877 5789999999999999999999987655 3579999999998765443 4699999


Q ss_pred             eccccC--Ch--hhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCCCcceeeeEEEecCCC
Q 041205          209 LAALAG--NE--EEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPTNDVINSVVLLQLPKD  283 (535)
Q Consensus       209 iaALVg--m~--edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~~eVINSVVvARK~~~  283 (535)
                      +++..+  +.  -...++++.+.++|+|||++++.-...  .-.++.+-..+ .-|.-....-|...-.|.++++.|..|
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~  219 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAP  219 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCC
Confidence            986542  11  123799999999999999999853211  11111110011 235422222233333488899987543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.41  E-value=3.5e-12  Score=119.26  Aligned_cols=117  Identities=20%  Similarity=0.209  Sum_probs=91.9

Q ss_pred             hHHHHHHHHH-HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205          115 LAKLEYGALI-ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD  193 (535)
Q Consensus       115 LirlE~~lL~-~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD  193 (535)
                      +++.+...+. ..+.+.++.+|||||||+ |..++.+++ ..++++|+++|+++++++.|++++++.+ + .+++|+++|
T Consensus        14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d   89 (187)
T PRK08287         14 MTKEEVRALALSKLELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGE   89 (187)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecC
Confidence            4555544332 334557889999999996 777788887 3678999999999999999999999888 5 579999999


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.. .. .+.||+||++...+   ....+++.+.+.|+|||++++..
T Consensus        90 ~~~-~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         90 API-EL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             chh-hc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEE
Confidence            742 11 24699999875543   46779999999999999998854

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.40  E-value=9.5e-13  Score=111.22  Aligned_cols=96  Identities=23%  Similarity=0.369  Sum_probs=76.1

Q ss_pred             EEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          135 VAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      |||+|||+ |.....+++.+-  +..+++|+|+|+++++.+++.....| .  +++|+++|+.+++...+.||+|+....
T Consensus         1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            79999997 555566666431  34899999999999999999999877 4  899999999998877778999999433


Q ss_pred             --cCC-hhhHHHHHHHHHhhcccCe
Q 041205          213 --AGN-EEEKAKILGHIRKYMKEGG  234 (535)
Q Consensus       213 --Vgm-~edK~~VL~eL~rvLKPGG  234 (535)
                        .++ .++-..+++++.++++|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence              345 7788999999999999998

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.40  E-value=3.7e-12  Score=120.08  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=95.9

Q ss_pred             HHhHHHHHHH-HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          113 VKLAKLEYGA-LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       113 v~LirlE~~l-L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      .++++.|... +...+.+.++.+|||||||+ |..++.+|+ ..++++|++||+|+++++.|++++++.| + .+++|++
T Consensus        21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~-G~~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~   96 (196)
T PRK07402         21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGT-GTIPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIE   96 (196)
T ss_pred             CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEE
Confidence            3467777664 45566667889999999996 556677776 4678999999999999999999999988 5 5799999


Q ss_pred             ccccccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          192 CDIMEVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       192 GDA~el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+.+..... ..+|.|+++..    .+...+++.+.++|+|||.+++...
T Consensus        97 ~d~~~~~~~~~~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         97 GSAPECLAQLAPAPDRVCIEGG----RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CchHHHHhhCCCCCCEEEEECC----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            9987543333 34788888643    2567899999999999999998764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.39  E-value=9.4e-12  Score=116.23  Aligned_cols=106  Identities=20%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..++.+|||+|||+ |..+..+++. .+. ++++++|+++.+++.+++...  .  ..+++|+.+|+.+.+...+.||+|
T Consensus        37 ~~~~~~vldiG~G~-G~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~D~i  110 (223)
T TIGR01934        37 VFKGQKVLDVACGT-GDLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE--L--PLNIEFIQADAEALPFEDNSFDAV  110 (223)
T ss_pred             cCCCCeEEEeCCCC-ChhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc--c--CCCceEEecchhcCCCCCCcEEEE
Confidence            35789999999997 5555666663 443 799999999999999998876  2  258999999998877655679999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++....+..++...+++.+.+.|+|||++++.+
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            986555545778899999999999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.38  E-value=2.7e-12  Score=127.20  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=102.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      .+.+..+..+..+++++|||.- .|||++.+|....++++|+++|+|++..+++.++++.+| +.+.|+|++|++.+.+.
T Consensus        62 g~fl~~li~~~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd  139 (237)
T KOG1663|consen   62 GQFLQMLIRLLNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLD  139 (237)
T ss_pred             HHHHHHHHHHhCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHH
Confidence            3333334456779999999998 599999999977779999999999999999999999999 89999999999987554


Q ss_pred             C------CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 K------LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 d------L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .      -+.||+||+|+.+   ..|...++++.+.+|+||+|++++.
T Consensus       140 ~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DNv  184 (237)
T KOG1663|consen  140 ELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDNV  184 (237)
T ss_pred             HHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEecc
Confidence            2      2469999999998   7899999999999999999999995

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.37  E-value=1.3e-12  Score=130.07  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=93.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -++.+||||||| +|.=+..||+   -|+.|+|+|+++++|+.|+..+...| +  .|++.++++.++...-+.||+|.+
T Consensus        58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~g-v--~i~y~~~~~edl~~~~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESG-V--NIDYRQATVEDLASAGGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhcc-c--cccchhhhHHHHHhcCCCccEEEE
Confidence            368999999999 8999999999   68999999999999999999999988 4  488999999887766568999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .-.+.+.++...++..+.+.+||||.+++.+.
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence            75554568999999999999999999999773

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.36  E-value=6.8e-12  Score=117.88  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|||||||++ ..+..+++ ..+..+|+++|+++++++.+++...      .+++|+++|+.+.+...+.||+|+.
T Consensus        33 ~~~~~vLDlG~G~G-~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        33 FIPASVLDIGCGTG-YLTRALLK-RFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCCeEEEECCCcc-HHHHHHHH-hCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence            34689999999974 55566666 4678889999999999999987543      3689999999887766667999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....++..+...++.++.+.|+|||.+++..
T Consensus       105 ~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       105 NLALQWCDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            8666656788999999999999999999865

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.36  E-value=4.9e-12  Score=107.90  Aligned_cols=104  Identities=22%  Similarity=0.328  Sum_probs=84.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceEEe
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvVfi  209 (535)
                      |.+|||+|||. |..++.+++. . ..+++|+|+|+.+++.|+..+...+ +.++++|+++|+.+..  ...+.||+|+.
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence            46999999995 7777777773 3 6999999999999999999999999 7889999999998876  34467999998


Q ss_pred             ccccCC--------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGN--------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm--------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +--.+-        ......+++++.+.|+|||++++-
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            744431        123578999999999999999874

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.35  E-value=1.1e-11  Score=119.45  Aligned_cols=120  Identities=23%  Similarity=0.194  Sum_probs=103.6

Q ss_pred             HHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          113 VKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       113 v~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      .++++.|..++.. -+.+.++++++|||||++.+| +-+|. ..|.++|++||.|+++++..+++.+++| + ++++++.
T Consensus        15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~   90 (187)
T COG2242          15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVE   90 (187)
T ss_pred             CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEe
Confidence            5688999776554 346799999999999976555 55553 5799999999999999999999999999 4 8999999


Q ss_pred             ccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |||-+.+.++..||.||+-...    .-..+|+.+...|+|||+||+.-
T Consensus        91 g~Ap~~L~~~~~~daiFIGGg~----~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242          91 GDAPEALPDLPSPDAIFIGGGG----NIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             ccchHhhcCCCCCCEEEECCCC----CHHHHHHHHHHHcCcCCeEEEEe
Confidence            9998888777789999998774    68999999999999999999965

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.34  E-value=1.1e-11  Score=124.61  Aligned_cols=112  Identities=21%  Similarity=0.285  Sum_probs=91.1

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +.......++.+|||||||+ |.-++.+++ .+|+.+++++|+ +++++.|++++++.| +.++|+|+.+|+.+.+  ..
T Consensus       141 l~~~~~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~--~~  214 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YP  214 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCCC--CC
Confidence            33344557789999999996 666777877 478899999998 799999999999999 7889999999986533  34


Q ss_pred             CcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+|++....+.  .+...++|+++++.|+|||+|++-+
T Consensus       215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            5899988765543  3445789999999999999998875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.33  E-value=5.3e-12  Score=120.64  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccc--cCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVK--EKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~--~dL~~FDv  206 (535)
                      .++.+|||||||+ |..++.+|+ ..++++|+|||+++++++.|++.++..+ + .+++|+++|+ ..++  ...+.||+
T Consensus        39 ~~~~~VLDiGcGt-G~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         39 NDAPIHLEIGFGK-GEFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCCeEEEEccCC-CHHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence            3678999999996 566667777 3688899999999999999999998888 5 6799999999 5544  33456999


Q ss_pred             EEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++.....+        ......++++++++|+|||+|++...
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            997532211        01257899999999999999998653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.32  E-value=1.1e-11  Score=126.10  Aligned_cols=128  Identities=16%  Similarity=0.273  Sum_probs=103.3

Q ss_pred             ccchhhH-HhHHHHH---HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205          107 PYYENYV-KLAKLEY---GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE  182 (535)
Q Consensus       107 pYy~NYv-~LirlE~---~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~  182 (535)
                      .||+.-. .|-.-+.   ..+...+.+.+|++||||||| -|.+++.+|++ + |++|+|+++|++..+.+++.+++.| 
T Consensus        44 ayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~-y-~v~V~GvTlS~~Q~~~~~~r~~~~g-  119 (283)
T COG2230          44 AYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEE-Y-GVTVVGVTLSEEQLAYAEKRIAARG-  119 (283)
T ss_pred             EEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHH-c-CCEEEEeeCCHHHHHHHHHHHHHcC-
Confidence            5665544 3444443   333444578999999999999 58888999994 3 9999999999999999999999999 


Q ss_pred             cCCCeEEEEccccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++++|+++..|-.++.   +.||-|...... ++ .+.+..+|..+.+.|+|||++++.+-
T Consensus       120 l~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         120 LEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             CCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence            8889999999976554   349999866554 34 67899999999999999999999763

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.32  E-value=1.1e-11  Score=124.03  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+|+   .|.+|+|+|+|+.+++.++++++..| +  ++++..+|+.+... .+.||+|+.
T Consensus       119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~  190 (287)
T PRK12335        119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS  190 (287)
T ss_pred             cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence            4567999999995 788899988   57899999999999999999999888 5  78999999865433 356999997


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ....+.  .++...++.++.++|+|||++++
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            654432  45788999999999999998655

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.31  E-value=2.6e-11  Score=115.45  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++.+|||||||+ |+.+..+++.   ..+|+++|+++++++.|++.+++.| + .+++++.+|+.+....
T Consensus        68 ~~l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~---~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~  141 (212)
T PRK00312         68 ARMTELLELKPGDRVLEIGTGS-GYQAAVLAHL---VRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPA  141 (212)
T ss_pred             HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHH---hCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCc
Confidence            3334445667889999999996 6666678772   3589999999999999999999998 5 4699999998654334


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|++++..      ..+.+.+.+.|+|||++++--
T Consensus       142 ~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        142 YAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             CCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEE
Confidence            4679999998655      234567788999999998743

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.31  E-value=7.8e-12  Score=121.78  Aligned_cols=111  Identities=20%  Similarity=0.216  Sum_probs=85.0

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++++|||||||+ ||.+-+||.-.-+.+.|++||++++.++.|+++++.+| + .+|.+++||+..-..
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-~-~nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-I-DNVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-T-HSEEEEES-GGGTTG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-c-CceeEEEcchhhccc
Confidence            45555566789999999999995 99999999843456789999999999999999999999 4 599999999976555


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.+.||.|++.+.+.  .-+    ..+.+.|++||++++=
T Consensus       138 ~~apfD~I~v~~a~~--~ip----~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVP--EIP----EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GG-SEEEEEESSBBS--S------HHHHHTEEEEEEEEEE
T ss_pred             cCCCcCEEEEeeccc--hHH----HHHHHhcCCCcEEEEE
Confidence            556799999987772  223    3455579999999983

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.31  E-value=2.6e-11  Score=124.40  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=90.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+..++...++++|||||||+ |+-++.|+..  ....|+|||.++.++..++...+..+ ...+|.|+.+|+.+++.
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~  186 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA  186 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC
Confidence            44444455445789999999995 7877888882  23469999999999987766555544 34689999999988776


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       .+.||+||....+++..++..+|.++++.|+|||.+++.+
T Consensus       187 -~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        187 -LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             -cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence             5679999986555445788999999999999999998754

>PRK06922 hypothetical protein; Provisional

Probab=99.31  E-value=2.4e-11  Score=135.14  Aligned_cols=109  Identities=16%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYD  205 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FD  205 (535)
                      ...++.+|||||||+ |..+..+|+ ..|+++|+|+|+++.|++.|++.....|   .++.++++|+.+++  ++.+.||
T Consensus       415 d~~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFD  489 (677)
T PRK06922        415 DYIKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVD  489 (677)
T ss_pred             hhcCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEE
Confidence            345689999999997 666667777 3689999999999999999998876655   47899999998766  4456799


Q ss_pred             eEEeccccCC-------------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN-------------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm-------------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++....+.             .++..++|++++++|||||.+++.+.
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9987654431             24678999999999999999999753

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=1.3e-12  Score=109.30  Aligned_cols=97  Identities=19%  Similarity=0.354  Sum_probs=63.7

Q ss_pred             EEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEecccc
Q 041205          136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALA  213 (535)
Q Consensus       136 LeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALV  213 (535)
                      ||||||++-++..++..  .++.+++|+|+|+.+++.|++.+...+.  ....+...+..+.....  +.||+|++...+
T Consensus         1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999986666555544  5899999999999999999999888772  44555555554443332  379999988777


Q ss_pred             CChhhHHHHHHHHHhhcccCeEE
Q 041205          214 GNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       214 gm~edK~~VL~eL~rvLKPGGvL  236 (535)
                      ++.++...+++++++.|+|||+|
T Consensus        77 ~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhhHHHHHHHHHHHcCCCCCC
Confidence            66689999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.30  E-value=2e-11  Score=122.95  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=94.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCC------cEEEEEeCChhHHHHHHHHHhhcCCcCCC--eEEEEccccccccC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKS------THFDNIDIDETANNLARRIVSSDDEIEKR--MKFLTCDIMEVKEK  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G------a~VtGIDIDpeAIelAR~li~~lG~Ls~r--I~Fi~GDA~el~~d  200 (535)
                      ..++++||||+||+ |-.|+.+.+ |.+.      ++|+..||+|++++.|++...+.+ +.++  +.|++|||.+++++
T Consensus        98 p~~~m~~lDvaGGT-GDiaFril~-~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~LpFd  174 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGT-GDIAFRILR-HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDLPFD  174 (296)
T ss_pred             CCCCCeEEEecCCc-chhHHHHHH-hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccCCCC
Confidence            36779999999996 888888877 5555      899999999999999999998877 5554  99999999999999


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++.||...++..+---.+..+.+++.+|+|||||++.+-.
T Consensus       175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999987665334789999999999999999998654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.28  E-value=1.9e-11  Score=115.83  Aligned_cols=108  Identities=18%  Similarity=0.191  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDv  206 (535)
                      ....+|||||||+ |..++.+|+ ..|++.|+|||+++++++.|++.+...| + .+++|+++|+.+++.   +.+.||.
T Consensus        15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence            4567999999996 666777877 3688999999999999999999999988 5 589999999987642   2346999


Q ss_pred             EEeccccCChhh--------HHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEE--------KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~ed--------K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++..-..+...        ...++..++++|+|||.|.+.+.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            998643222011        15799999999999999988764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.3e-11  Score=119.17  Aligned_cols=108  Identities=20%  Similarity=0.219  Sum_probs=87.5

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++++||||||| .||.+-+||+  + ..+|++||++++..+.|+++++.+| + .+|.+++||+..--.
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~--l-~~~V~siEr~~~L~~~A~~~L~~lg-~-~nV~v~~gDG~~G~~  134 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTG-SGYQAAVLAR--L-VGRVVSIERIEELAEQARRNLETLG-Y-ENVTVRHGDGSKGWP  134 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCC-chHHHHHHHH--H-hCeEEEEEEcHHHHHHHHHHHHHcC-C-CceEEEECCcccCCC
Confidence            3444445667999999999999 5999999999  2 3499999999999999999999999 6 459999999976555


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ....||.|++.+.+.  .-+..+    .+.|+|||++++=
T Consensus       135 ~~aPyD~I~Vtaaa~--~vP~~L----l~QL~~gGrlv~P  168 (209)
T COG2518         135 EEAPYDRIIVTAAAP--EVPEAL----LDQLKPGGRLVIP  168 (209)
T ss_pred             CCCCcCEEEEeeccC--CCCHHH----HHhcccCCEEEEE
Confidence            557899999988873  223344    4579999999984

>PRK04266 fibrillarin; Provisional

Probab=99.26  E-value=8.7e-11  Score=115.44  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cC-CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EK-LGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~d-L~~  203 (535)
                      +.+.++++|||+|||+ |..++.+|+. .++++|+++|++++|++...+.++..    .+|.++.+|+.+..  .+ ...
T Consensus        68 l~i~~g~~VlD~G~G~-G~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~  141 (226)
T PRK04266         68 FPIKKGSKVLYLGAAS-GTTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEK  141 (226)
T ss_pred             CCCCCCCEEEEEccCC-CHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcccc
Confidence            5678999999999997 5566777773 44679999999999999888776653    47899999986421  11 245


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ||+||.+...  ......+++++.++|||||.+++.
T Consensus       142 ~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        142 VDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999975221  123355789999999999999883

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.3e-11  Score=119.51  Aligned_cols=152  Identities=24%  Similarity=0.308  Sum_probs=115.5

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+++.+++||+|.|+|++-+| ..||....+.++|+++|+.++.++.|+++++..| +.+++++..+|+.+...
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGID  160 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccc
Confidence            456666778899999999999975555 5666645677999999999999999999999999 88889999999988665


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc---------cccccccCCCCcc---c--cCCcEEEE-E
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA---------KGARAFLYPVVEH---E--LFDFKVLS-I  264 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa---------~GlR~fLYP~Vdp---d--l~GFeil~-v  264 (535)
                      .. .||+||+| +    +++.++++++.+.|+|||.+++-++         ..++..  ..+++   +  ...|++.. .
T Consensus       161 ~~-~vDav~LD-m----p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~--g~~~ie~~E~l~R~~~v~~~~  232 (256)
T COG2519         161 EE-DVDAVFLD-L----PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER--GFVDIEAVETLVRRWEVRKEA  232 (256)
T ss_pred             cc-ccCEEEEc-C----CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc--Cccchhhheeeeheeeecccc
Confidence            54 89999997 2    6899999999999999999999875         112221  22232   2  24566543 5


Q ss_pred             EcCCCc-cee--eeEEEecC
Q 041205          265 FHPTND-VIN--SVVLLQLP  281 (535)
Q Consensus       265 ~hP~~e-VIN--SVVvARK~  281 (535)
                      .+|.+. +-.  -++++||.
T Consensus       233 ~RP~~~~v~HTgyivf~R~~  252 (256)
T COG2519         233 TRPETRMVGHTGYIVFARKL  252 (256)
T ss_pred             cCcccccccceeEEEEEeec
Confidence            567653 222  26777774

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.26  E-value=5.8e-11  Score=113.81  Aligned_cols=124  Identities=19%  Similarity=0.274  Sum_probs=97.0

Q ss_pred             hhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE
Q 041205          110 ENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF  189 (535)
Q Consensus       110 ~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F  189 (535)
                      .++..+.......+.......++.+|||||||+ |..+..+++   .+++|+++|+++++++.|++.+...+ .  +++|
T Consensus        27 ~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~   99 (233)
T PRK05134         27 KPLHRINPLRLNYIREHAGGLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESG-L--KIDY   99 (233)
T ss_pred             HHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEE
Confidence            444455555556655555446789999999996 666677777   46899999999999999999988877 3  6899


Q ss_pred             EEcccccccc-CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          190 LTCDIMEVKE-KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       190 i~GDA~el~~-dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+|+.+.+. ..+.||+|++...++..++...++..+.+.|+|||.+++..
T Consensus       100 ~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        100 RQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             EecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999877652 23579999987665555688899999999999999998864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.26  E-value=8.5e-11  Score=114.35  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC------C----cCCCeEEEEcccccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD------E----IEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG------~----Ls~rI~Fi~GDA~el~~  199 (535)
                      .++.|||++||| .|.-+++||.   .|..|+|||+++.+++.+.+......      .    -..+|+|+++|+.++..
T Consensus        33 ~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        33 PAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            466799999999 5899999998   68999999999999998644221100      0    02479999999988665


Q ss_pred             C-CCCcceEEecc-ccCC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 K-LGEYDCIILAA-LAGN-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 d-L~~FDvVfiaA-LVgm-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      . .+.||.||-.+ ++++ .+.+.++++.+.+.|+|||++++-
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            4 34599998543 3455 678899999999999999975554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.25  E-value=6.7e-11  Score=122.05  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..+.+.++++|||||||+ |+.++.+|+.....+.|++||+++++++.|++.++..| + +++.++++|+.+...+.+.|
T Consensus        74 ~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCc
Confidence            334567889999999996 77778888843234689999999999999999999999 5 68999999987766656679


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+++..+      ..+...+.+.|+|||++++-.
T Consensus       151 D~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGV------DEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence            999997555      123445678999999988854

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.25  E-value=2.9e-11  Score=125.74  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++ ..++.+|+++|+++++++.|++....     .+++|+.+|+.+++...+.||+|+.
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence            4678999999997 566666776 35778999999999999999987532     4689999999887766667999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...++..+++.+++++++++|+|||.+++..
T Consensus       185 ~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        185 AGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             cChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            7655545788899999999999999987754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.25  E-value=4.4e-11  Score=105.86  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=76.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|||||||. |..+..|++   .|.+|+|+|+++.+++.        .    .+.+...+..+.....+.||+|+
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~~~g~D~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~fD~i~   83 (161)
T PF13489_consen   20 LKPGKRVLDIGCGT-GSFLRALAK---RGFEVTGVDISPQMIEK--------R----NVVFDNFDAQDPPFPDGSFDLII   83 (161)
T ss_dssp             TTTTSEEEEESSTT-SHHHHHHHH---TTSEEEEEESSHHHHHH--------T----TSEEEEEECHTHHCHSSSEEEEE
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHhh--------h----hhhhhhhhhhhhhccccchhhHh
Confidence            47889999999996 455566677   46799999999999988        1    23444444444445557899999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      +....++.++...++.++.++|||||++++....
T Consensus        84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            8877766679999999999999999999998753

...

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=6e-11  Score=118.44  Aligned_cols=114  Identities=20%  Similarity=0.315  Sum_probs=85.4

Q ss_pred             CCCCEEEEEccCCCh--hh-HHHHHhhcC----CCcEEEEEeCChhHHHHHHHHHhh------------------cC---
Q 041205          130 AQLKKVAFVGSGPMP--LT-SIILASQHM----KSTHFDNIDIDETANNLARRIVSS------------------DD---  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplP--lT-AI~LAk~~l----~Ga~VtGIDIDpeAIelAR~li~~------------------lG---  181 (535)
                      .++.||+++|||++-  || |+.+++...    ++.+|+|+|+|++|++.|++.+-.                  .+   
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            456899999999742  22 455555222    257999999999999999986410                  00   


Q ss_pred             ----CcCCCeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          182 ----EIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       182 ----~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                          .+.++|+|.++|+.+.+...+.||+|++....+.  .+++.+++.++++.|+|||.|++-....
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence                0235799999999886655678999998655443  5788899999999999999999966543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.23  E-value=8.8e-11  Score=109.19  Aligned_cols=104  Identities=23%  Similarity=0.378  Sum_probs=82.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+..+|||+|||. |.=++.+++ ..+..+|+++|+++.+++.|+++++..+ +.+ ++++.+|..+... ...||+|++
T Consensus        30 ~~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~  104 (170)
T PF05175_consen   30 HKGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVS  104 (170)
T ss_dssp             HTTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE
T ss_pred             ccCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEE
Confidence            3688999999996 666677777 5778889999999999999999999999 655 9999999876443 467999998


Q ss_pred             ccccCC-----hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGN-----EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm-----~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .--.+.     ..-..+++++..++|+|||.+.+
T Consensus       105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            643321     13468899999999999997743

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.23  E-value=1.3e-10  Score=111.02  Aligned_cols=103  Identities=26%  Similarity=0.385  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+   +.||+|+
T Consensus        53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii  124 (219)
T TIGR02021        53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV  124 (219)
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence            35689999999996 666677777   46799999999999999999998877 5568999999987654   6799999


Q ss_pred             ecccc-CC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALA-GN-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALV-gm-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ....+ ++ .++...++.++.+.+++|+++.+.
T Consensus       125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            75554 44 456788999999999988777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03438 probable methyltransferase

Probab=99.22  E-value=2.9e-10  Score=115.12  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhhC-----CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          116 AKLEYGALIENTG-----VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       116 irlE~~lL~~~~~-----l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      ++.|...+.....     +.++.+|||+|||++-.|..++ ++...+.+|++||+|++|++.|++.+.... ...+|.++
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll-~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i  120 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLL-DALRQPARYVPIDISADALKESAAALAADY-PQLEVHGI  120 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHH-HhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEE
Confidence            6777666555442     3567899999999866665555 422227899999999999999998876643 23468889


Q ss_pred             EccccccccCCCC-----cceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          191 TCDIMEVKEKLGE-----YDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       191 ~GDA~el~~dL~~-----FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||..+.......     ..++|+.+..+.  .++...+|++++++|+|||.+++..
T Consensus       121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            9998763221222     235555556654  6677899999999999999998743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.21  E-value=1.1e-10  Score=122.57  Aligned_cols=123  Identities=14%  Similarity=0.219  Sum_probs=91.1

Q ss_pred             ccchhhHHhHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc
Q 041205          107 PYYENYVKLAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI  183 (535)
Q Consensus       107 pYy~NYv~LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L  183 (535)
                      +||..-..|..-.   +..+...+.+.++++|||||||. |..++.+|++  .|++|+|+|+|+++++.|++.++  | +
T Consensus       140 g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~--~-l  213 (383)
T PRK11705        140 GYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEH--YGVSVVGVTISAEQQKLAQERCA--G-L  213 (383)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhc--c-C
Confidence            5775444433322   33344445668899999999996 5556777773  48899999999999999999874  4 3


Q ss_pred             CCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          184 EKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       184 s~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .+++..+|..++   .+.||.|+...... . ..+...+++++.++|||||++++..
T Consensus       214 --~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        214 --PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             --eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              488999998654   25799998654332 2 3567899999999999999998854

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.21  E-value=1.5e-10  Score=113.97  Aligned_cols=110  Identities=25%  Similarity=0.293  Sum_probs=83.1

Q ss_pred             HHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          113 VKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       113 v~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      .+.++.-...+...  ..++++|||||||+ |+.++.+++  ....+|+|+|+|+.+++.|+++++..| +.+++.+..+
T Consensus       103 h~tt~~~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~  176 (250)
T PRK00517        103 HPTTRLCLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG  176 (250)
T ss_pred             CHHHHHHHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC
Confidence            34444444444432  25789999999997 787787766  233469999999999999999999888 6566666554


Q ss_pred             cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          193 DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       193 DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |.        .||+|+.....   .....++.++.++|+|||.+++.
T Consensus       177 ~~--------~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        177 DL--------KADVIVANILA---NPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             CC--------CcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEE
Confidence            42        69999975433   45678899999999999999985

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.21  E-value=1.2e-10  Score=117.45  Aligned_cols=108  Identities=20%  Similarity=0.285  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||+|||+ |.-++.+|+ ..++++|+|+|+|+++++.|+++++..| +.++|+|+++|+.+.. ....||+|+.
T Consensus       120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~  195 (284)
T TIGR03533       120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS  195 (284)
T ss_pred             CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence            4568999999996 667778877 4678999999999999999999999999 7789999999986533 2246999997


Q ss_pred             cccc-------CC------------------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALA-------GN------------------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALV-------gm------------------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .--.       .+                  ...+..++..+.++|+|||++++...
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            4100       00                  13457889999999999999998654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.21  E-value=1.2e-10  Score=117.17  Aligned_cols=102  Identities=25%  Similarity=0.319  Sum_probs=83.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|||||||+ |..++.+++  ....+|+|+|+|+.+++.|++++...+ +..++.+..+|...  ...+.||+|+.
T Consensus       158 ~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~--~~~~~fDlVva  231 (288)
T TIGR00406       158 LKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQ--PIEGKADVIVA  231 (288)
T ss_pred             CCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeccccc--ccCCCceEEEE
Confidence            4689999999997 777788777  344699999999999999999999888 77788888887432  22357999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+.   .....++.++.+.|+|||.|++-.
T Consensus       232 n~~~---~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       232 NILA---EVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             ecCH---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            6544   566789999999999999998853

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.19  E-value=1.9e-10  Score=106.85  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=80.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|||+|||+ |.-++.+++   .+.+|+++|+|+++++.|+++++..+ +  +++++++|+.+..  .+.||+|+
T Consensus        17 ~~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~--~~~fD~Vi   87 (179)
T TIGR00537        17 ELKPDDVLEIGAGT-GLVAIRLKG---KGKCILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV--RGKFDVIL   87 (179)
T ss_pred             hcCCCeEEEeCCCh-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc--CCcccEEE
Confidence            35678999999996 555667766   23499999999999999999998877 3  6899999987643  34799999


Q ss_pred             eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .....+.                     .....++++++.++|+|||.+++-.
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            7633211                     0114678999999999999988854

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.19  E-value=2.2e-10  Score=111.91  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=80.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh------cCC----cCCCeEEEEcccccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS------DDE----IEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~------lG~----Ls~rI~Fi~GDA~el~~  199 (535)
                      .++.|||++||| .|..+++||.   .|..|+|||+++.+++.+.+-...      .|.    .+.+|+|.++|+.++..
T Consensus        36 ~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         36 PAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            456899999999 6999999999   699999999999999987431110      000    13689999999988754


Q ss_pred             CC-CCcceEEeccc-cCC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          200 KL-GEYDCIILAAL-AGN-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       200 dL-~~FDvVfiaAL-Vgm-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .. +.||.||-.+. .+. .+.+.+++..+.+.|+|||++++
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            33 56999995443 334 67899999999999999986443

>PRK00811 spermidine synthase; Provisional

Probab=99.19  E-value=1.3e-10  Score=117.21  Aligned_cols=110  Identities=17%  Similarity=0.278  Sum_probs=85.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c--CCCeEEEEccccccccC-CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I--EKRMKFLTCDIMEVKEK-LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L--s~rI~Fi~GDA~el~~d-L~~FD  205 (535)
                      ..+++||+||||. |.++..+++ +.+..+|++||+|+++++.|++.+...+. .  +.+++++.+|+.+.... .+.||
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            5789999999995 777777766 44557999999999999999999875420 1  46899999999876543 34699


Q ss_pred             eEEeccccCChh----hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEE----EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~e----dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++++.-+..+    -..++++.+.+.|+|||++++...
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999986432111    137889999999999999998643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.19  E-value=2.3e-10  Score=110.35  Aligned_cols=113  Identities=10%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             HhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          114 KLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       114 ~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      +++..+...+.+.+ .+.++.+|||||||+ |..+..+++ ..++.+|+|||+|+++++.|++...       ++.++++
T Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~   95 (204)
T TIGR03587        25 SLVAAKLAMFARALNRLPKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQG   95 (204)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEe
Confidence            33444555555543 346788999999996 777777777 4578999999999999999987532       3678899


Q ss_pred             cccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          193 DIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       193 DA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+.+ +...+.||+|++.... ++ .++..++++++.+++  ++.+++
T Consensus        96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587        96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence            9887 6666789999987655 44 456789999999987  345554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.18  E-value=2.4e-10  Score=90.21  Aligned_cols=101  Identities=27%  Similarity=0.357  Sum_probs=81.8

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEEeccc
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCIILAAL  212 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVfiaAL  212 (535)
                      +|+|||||+ |..+..+++  .++.+++++|+++.+++.+++.....+  ..+++|+.+|..+... ..+.||+|++...
T Consensus         1 ~ildig~G~-G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGT-GALALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCc-cHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence            589999997 455556655  467899999999999999997544433  3689999999987654 4467999999877


Q ss_pred             cCC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          213 AGN-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       213 Vgm-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+. ......++..+.+.++|||.+++-
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            655 678899999999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.18  E-value=2.2e-10  Score=113.68  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .++.+|||||||+ |+.+..+++.+.  .++.|+|+|+|+++++.|++..       .+++|..+|+.++++..+.||+|
T Consensus        84 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~I  155 (272)
T PRK11088         84 EKATALLDIGCGE-GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDAI  155 (272)
T ss_pred             CCCCeEEEECCcC-CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeEE
Confidence            4568999999996 555566666322  1358999999999999997642       35889999999888777789999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEccc-----ccccccCCC
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK-----GARAFLYPV  251 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~-----GlR~fLYP~  251 (535)
                      +.. ..   +   ..+.++.|+|+|||+|++..+.     .++..+|..
T Consensus       156 ~~~-~~---~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~  197 (272)
T PRK11088        156 IRI-YA---P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDE  197 (272)
T ss_pred             EEe-cC---C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhccc
Confidence            853 22   1   2467899999999999987642     245556653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.18  E-value=2.2e-10  Score=121.07  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=86.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGE  203 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~  203 (535)
                      .+...++.+|||+||||+|.|. .+|+ ..++++|+++|+++++++.+++++++.| +..++.+..+|+.....  ..+.
T Consensus       233 ~L~~~~g~~VLDlcag~G~kt~-~la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~  309 (426)
T TIGR00563       233 WLAPQNEETILDACAAPGGKTT-HILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQ  309 (426)
T ss_pred             HhCCCCCCeEEEeCCCccHHHH-HHHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccc
Confidence            3456789999999999977765 4555 3457899999999999999999999999 65445567888765433  3456


Q ss_pred             cceEEeccc---cCC---hhh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAAL---AGN---EEE----------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaAL---Vgm---~ed----------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||.|++++.   .|.   .++                ..++|.++++.|||||.|++-+
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999998743   121   111                3689999999999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00452 methyltransferase, putative

Probab=99.17  E-value=6.1e-10  Score=114.65  Aligned_cols=115  Identities=12%  Similarity=0.107  Sum_probs=86.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+..++...++++|||||||+ |+-++.++..  ....|+|||.++.++..++..-+..+ ...++.+..+++.+++..
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGS-GYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC
Confidence            3444444556789999999996 6766777662  22479999999999987655444333 235789999998877653


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ..||+||......+..+...+|.++++.|+|||.|++.+
T Consensus       187 -~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       187 -YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             -CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence             479999987655445788999999999999999999754

Known examples to date are restricted to the proteobacteria.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.17  E-value=2.4e-10  Score=114.29  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .....+...+.+.||++|+|.|+|.+.+| ..||+...|.++|+++|+.++.++.|+++++..| +.++|++.++|+.+.
T Consensus        27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   27 KDISYILMRLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE  104 (247)
T ss_dssp             HHHHHHHHHTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG
T ss_pred             chHHHHHHHcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc
Confidence            44566666778899999999999986665 5677756789999999999999999999999999 788999999999654


Q ss_pred             cc--CC-CCcceEEeccccCChhhHHHHHHHHHhhc-ccCeEEEEEcc
Q 041205          198 KE--KL-GEYDCIILAALAGNEEEKAKILGHIRKYM-KEGGVLLVRSA  241 (535)
Q Consensus       198 ~~--dL-~~FDvVfiaALVgm~edK~~VL~eL~rvL-KPGGvLVvRsa  241 (535)
                      .+  +. ..||.||+| +    +++..++.++.+.| +|||++++-++
T Consensus       105 g~~~~~~~~~DavfLD-l----p~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  105 GFDEELESDFDAVFLD-L----PDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             --STT-TTSEEEEEEE-S----SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             cccccccCcccEEEEe-C----CCHHHHHHHHHHHHhcCCceEEEECC
Confidence            44  22 469999997 2    57899999999999 99999999775

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.17  E-value=3.1e-10  Score=107.74  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=79.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+++.+++.|++.+...| +.+++.|+.+|..   ...+.||+|+.
T Consensus        62 ~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v~~  133 (230)
T PRK07580         62 LTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTVVC  133 (230)
T ss_pred             CCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEEEE
Confidence            5678999999996 566677877   35789999999999999999998888 5678999999942   33467999997


Q ss_pred             cccc-CC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALA-GN-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALV-gm-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .... ++ .++...++..+.+.+++|+++.+
T Consensus       134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             cchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            6554 44 56677889999987765555554

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.17  E-value=1.6e-10  Score=122.52  Aligned_cols=112  Identities=19%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KL  201 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL  201 (535)
                      .+...++++|||+||||+|.|. .+|+.....++|+++|+++.+++.+++++++.| + .+|+++++|+.+++.    ..
T Consensus       247 ~l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~  323 (434)
T PRK14901        247 LLDPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWR  323 (434)
T ss_pred             HhCCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccc
Confidence            3456788999999999977764 555533445799999999999999999999999 5 469999999987652    23


Q ss_pred             CCcceEEecccc---CC---hhh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALA---GN---EEE----------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALV---gm---~ed----------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||.|++++--   |.   .++                ..++|.++.+.|||||+|++-+
T Consensus       324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            469999997531   21   111                3688999999999999998854

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.17  E-value=3.7e-11  Score=121.27  Aligned_cols=102  Identities=21%  Similarity=0.331  Sum_probs=84.4

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----CeEEEEccccccccCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----RMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +++||||||| +|+=+.-||+   .|+.|+|||.++++++.|++....+..++.    +++|.+.|+.+..   +.||.|
T Consensus        90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV  162 (282)
T ss_pred             CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence            4889999999 7999999999   689999999999999999999544442333    4889999886543   349999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...=.+.+..++..+++.+.++|||||.+.+-+
T Consensus       163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence            976454446899999999999999999998865

>PLN02366 spermidine synthase

Probab=99.16  E-value=2.5e-10  Score=117.19  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=86.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c-CCCeEEEEccccccccCC--CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I-EKRMKFLTCDIMEVKEKL--GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L-s~rI~Fi~GDA~el~~dL--~~FD  205 (535)
                      ..+++||+||||. |.++..+++ |.+..+|+.||+|+++++.|++.+...+. + +.|++++.+|+.+.....  +.||
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            6789999999995 777788887 44457899999999999999998865321 2 359999999997665433  4699


Q ss_pred             eEEeccccCC-hh---hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN-EE---EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm-~e---dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++++.-+. ..   -..++++.++++|+|||++++...
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            9999865532 11   256899999999999999987543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=2e-10  Score=121.84  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=90.3

Q ss_pred             HHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          117 KLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       117 rlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      +.+...+.. .+.+.++++|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +|+++++|+.
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~  311 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDAR  311 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcc
Confidence            344333332 445678899999999986665 4566633367899999999999999999999999 64 5999999998


Q ss_pred             ccccCC-CCcceEEecccc---CC---hh----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 EVKEKL-GEYDCIILAALA---GN---EE----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 el~~dL-~~FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +....+ +.||+|++++--   |.   .+                -...+|.++.+.|||||.|++-+
T Consensus       312 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        312 KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            754333 569999998531   11   00                12468999999999999999754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.15  E-value=2.3e-10  Score=113.95  Aligned_cols=111  Identities=13%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +...++.+|||+||||++.|.. +|......+.|+++|+++.+++.+++++++.| + .+|.++++|+.++....+.||+
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~  143 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDA  143 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCE
Confidence            3557889999999999777755 45533345799999999999999999999999 5 5799999999776554556999


Q ss_pred             EEecccc---CC---h----------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALA---GN---E----------------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALV---gm---~----------------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++++--   |.   .                ..-.++|.++.+.|||||+|++-+
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9987431   21   0                122469999999999999998764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=3.7e-10  Score=120.19  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=88.2

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEY  204 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~F  204 (535)
                      .+.+.++.+|||+||||+|.|.. +|....++++|+++|+++.+++.+++++++.| + .+++++++|+.+++. ..+.|
T Consensus       232 ~l~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~f  308 (431)
T PRK14903        232 LMELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTF  308 (431)
T ss_pred             HhCCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccC
Confidence            34567899999999999777754 45533457899999999999999999999999 5 469999999987652 23469


Q ss_pred             ceEEecccc---CC-h--h----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALA---GN-E--E----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALV---gm-~--e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |.|++++--   |+ .  +                ...++|.++.+.|+|||++++-+
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999997433   32 1  1                23677999999999999998865

>PRK05785 hypothetical protein; Provisional

Probab=99.15  E-value=1.9e-10  Score=112.15  Aligned_cols=91  Identities=12%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||++ ..+..+++. . +.+|+|+|+|++|++.|++.    +      .++++|+.++++..+.||+|++.
T Consensus        51 ~~~~VLDlGcGtG-~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----~------~~~~~d~~~lp~~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGKG-ELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----D------DKVVGSFEALPFRDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCCC-HHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----c------ceEEechhhCCCCCCCEEEEEec
Confidence            4789999999974 556677773 3 68999999999999999853    2      35789999888888889999987


Q ss_pred             cccCChhhHHHHHHHHHhhcccCe
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGG  234 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGG  234 (535)
                      ..++..+++.+++.+++|+|||++
T Consensus       118 ~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        118 FALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ChhhccCCHHHHHHHHHHHhcCce
Confidence            666556899999999999999964

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=3.3e-10  Score=120.53  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +...++++|||+||||++.| +.+|+....+++|+++|+++++++.+++++++.| + .+|+++++|+.+++ ....||+
T Consensus       246 l~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~-~~~~fD~  321 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFS-PEEQPDA  321 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCcccccc-cCCCCCE
Confidence            35567899999999986655 4566633346799999999999999999999999 5 57999999998765 3356999


Q ss_pred             EEecccc---CC-h------------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALA---GN-E------------------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALV---gm-~------------------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++++--   |+ .                  ....++|.++.+.|+|||+|++-+
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9987421   21 0                  123468999999999999999965

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.14  E-value=3.4e-10  Score=115.66  Aligned_cols=106  Identities=23%  Similarity=0.358  Sum_probs=84.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +.+|||+|||+ |.-++.+|. ..++++|+++|+|+++++.|+++++..| +.++|+|+++|+.+... .+.||+|+..-
T Consensus       134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP  209 (307)
T PRK11805        134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP  209 (307)
T ss_pred             CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence            37999999996 667777877 4688999999999999999999999998 77789999999865332 24699999741


Q ss_pred             ----------------------ccC--C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          212 ----------------------LAG--N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 ----------------------LVg--m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                                            +.|  . ...+..++..+.++|+|||.+++...
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                                  000  0 13457899999999999999998654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.14  E-value=3.1e-10  Score=120.40  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VK  198 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~  198 (535)
                      ..+...+...++++|||||||+ |..+..+++   .+.+|+|||+++++++.+++..   + ...+++|+++|+.+  ++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~~---~-~~~~i~~~~~d~~~~~~~   98 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESIN---G-HYKNVKFMCADVTSPDLN   98 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHh---c-cCCceEEEEecccccccC
Confidence            3444444445678999999995 666677888   2579999999999999887643   2 23589999999863  33


Q ss_pred             cCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.+.||+|++....++  .++...++.++.+.|+|||++++++
T Consensus        99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336         99 ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            44467999998755543  3446899999999999999999976

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.13  E-value=1.6e-10  Score=114.36  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ...++..+.+|.|+||||+-.|. +|+++ .|++.|+|||-|++|++.|++.   +.    +.+|..||+.++..+ .++
T Consensus        24 a~Vp~~~~~~v~DLGCGpGnsTe-lL~~R-wP~A~i~GiDsS~~Mla~Aa~r---lp----~~~f~~aDl~~w~p~-~~~   93 (257)
T COG4106          24 ARVPLERPRRVVDLGCGPGNSTE-LLARR-WPDAVITGIDSSPAMLAKAAQR---LP----DATFEEADLRTWKPE-QPT   93 (257)
T ss_pred             hhCCccccceeeecCCCCCHHHH-HHHHh-CCCCeEeeccCCHHHHHHHHHh---CC----CCceecccHhhcCCC-Ccc
Confidence            34567899999999999955555 55553 8999999999999999999654   32    578999999876543 579


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++|..+..++.++-.++|.++...|.|||+|.+--+
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence            9999988888889999999999999999999999654

>PRK14968 putative methyltransferase; Provisional

Probab=99.13  E-value=1e-09  Score=100.46  Aligned_cols=104  Identities=21%  Similarity=0.361  Sum_probs=81.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC-eEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR-MKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r-I~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++++|||+|||. |++++.++.+   +++|+++|+|+++++.+++.+...+ +.++ +.++++|..+...+ ..||+|+
T Consensus        22 ~~~~~vLd~G~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGS-GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL   95 (188)
T ss_pred             cCCCEEEEEcccc-CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence            6788999999995 7788888882   7999999999999999999998888 5444 99999998763322 3699998


Q ss_pred             eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .......                     ......+++++.++|+|||.+++-
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            6532210                     122466899999999999987764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.12  E-value=4.4e-10  Score=106.54  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=85.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfi  209 (535)
                      .+.+|||||||+ |..+..+++   .+.+|+++|+++.+++.+++.+...+ . .+++|.++|+.+.+... +.||+|++
T Consensus        45 ~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDP-L-LKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhcCCCCCccEEEe
Confidence            478999999997 566667777   35789999999999999999988877 3 36899999998766543 57999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+...+...++..+.+.|+|||.+++..
T Consensus       119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       119 MEVLEHVPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            7655545678899999999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.11  E-value=6e-10  Score=113.87  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=87.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++++|||+|||++++ ++-.+.   .|+.|+|+|+|++++..|+++++..| +.+ +.++++|+.+++...+.||+
T Consensus       178 ~~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~  251 (329)
T TIGR01177       178 ARVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDA  251 (329)
T ss_pred             hCCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCE
Confidence            3557889999999997544 444444   58999999999999999999999999 554 99999999987765567999


Q ss_pred             EEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++.-.|.         ..-+.++++++.++|+|||.+++-.+
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~  295 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP  295 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence            999743221         12368999999999999999888654

This family is found exclusively in the Archaea.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=9.3e-10  Score=116.55  Aligned_cols=110  Identities=18%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGE  203 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~  203 (535)
                      .+...++++|||+||||++.|. .+++ ..++++|+++|+++++++.+++++++.| +  +++++++|+.+...  ..+.
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~  313 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTA-HILE-LAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQP  313 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCC
Confidence            4456789999999999977665 4555 2456899999999999999999999999 5  47899999976532  2346


Q ss_pred             cceEEecccc---CC-----------h--------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALA---GN-----------E--------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALV---gm-----------~--------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||.|++++--   |.           .        ....+++..+.+.|+|||+|++-+
T Consensus       314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            9999977532   10           0        123579999999999999999765

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.11  E-value=7.5e-10  Score=107.23  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++.++||+||| -|-=|++||+   .|..|+++|+|+.+++..++++++-+ +  .|+..+.|..+...+ ..||+
T Consensus        26 ~~~~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   26 VPLLKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             CTTS-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEE
T ss_pred             HhhcCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhcccc-CCcCE
Confidence            344578899999999 5899999999   79999999999999999999999988 4  499999998765543 57999


Q ss_pred             EEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+..... .+ .+....+++.+...++|||++++...
T Consensus        98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            9853222 23 67778899999999999999888553

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.11  E-value=1.1e-09  Score=109.85  Aligned_cols=106  Identities=20%  Similarity=0.331  Sum_probs=84.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +.+|||+|||+ |.-++.+|. ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+.. ....||+|+..-
T Consensus       115 ~~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~-~~~~fDlIvsNP  190 (284)
T TIGR00536       115 ILHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPL-AGQKIDIIVSNP  190 (284)
T ss_pred             CCEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccC-cCCCccEEEECC
Confidence            37999999996 677788887 4678999999999999999999999999 6678999999987532 223699998741


Q ss_pred             ----------------------ccC-C--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          212 ----------------------LAG-N--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 ----------------------LVg-m--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                                            +.| -  ...+..++.++.++|+|||.+++-.+
T Consensus       191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                                  010 0  13578899999999999999998654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.10  E-value=8e-10  Score=106.04  Aligned_cols=106  Identities=22%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|||+|||+ |..++.+++ ..++.+|+|+|+++.+++.|++++...| + .+++|+++|+.+. ...+.||+|+.
T Consensus        86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~-~~~~~fD~Vi~  160 (251)
T TIGR03534        86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEP-LPGGKFDLIVS  160 (251)
T ss_pred             cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhcc-CcCCceeEEEE
Confidence            3467999999996 677777877 4678899999999999999999999988 5 4799999999763 33467999987


Q ss_pred             ccccC-------C-------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAG-------N-------------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVg-------m-------------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .--..       +                   ......++.++.++|+|||.+++..
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            32110       1                   1123578999999999999999864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.09  E-value=9.9e-10  Score=115.81  Aligned_cols=114  Identities=13%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC--CCeEEEEcccccccc
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE--KRMKFLTCDIMEVKE  199 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls--~rI~Fi~GDA~el~~  199 (535)
                      .|..+++...+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|+++++..+ .+  .+++|+.+|+.+.. 
T Consensus       219 llL~~lp~~~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~-  294 (378)
T PRK15001        219 FFMQHLPENLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGV-  294 (378)
T ss_pred             HHHHhCCcccCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccC-
Confidence            344445434457999999996 666778877 4789999999999999999999998776 33  47999999986432 


Q ss_pred             CCCCcceEEeccccC--C---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAG--N---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVg--m---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ....||+|++.--.+  .   .....+++.++.++|+|||.|.+-
T Consensus       295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            224699999863322  1   134568999999999999988775

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.09  E-value=1.2e-09  Score=118.66  Aligned_cols=106  Identities=15%  Similarity=0.265  Sum_probs=84.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |.-++.+|. ..++++|+++|+|+++++.|++++...| +.++++|+++|+.+.. ..+.||+|+..
T Consensus       138 ~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~-~~~~fDlIvsN  213 (506)
T PRK01544        138 KFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENI-EKQKFDFIVSN  213 (506)
T ss_pred             CCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhC-cCCCccEEEEC
Confidence            457999999996 677777777 3688999999999999999999999988 7789999999986532 22469999972


Q ss_pred             c-----------------------ccC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 A-----------------------LAG-N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 A-----------------------LVg-m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -                       +.| -  ...+.+++.++.++|+|||.+++-.
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1                       111 0  2456778899999999999998854

>PRK01581 speE spermidine synthase; Validated

Probab=99.08  E-value=7.1e-10  Score=116.73  Aligned_cols=111  Identities=23%  Similarity=0.346  Sum_probs=84.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-----hhcCCcCCCeEEEEccccccccCC-C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-----SSDDEIEKRMKFLTCDIMEVKEKL-G  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-----~~lG~Ls~rI~Fi~GDA~el~~dL-~  202 (535)
                      ...+++||+|||| .|+++..+.+ +.+..+|++||+|+++++.|++..     .+.+.-+.|++++.+|+.+..... +
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~  225 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS  225 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence            3678999999999 5777777776 455689999999999999999731     122211479999999998865443 4


Q ss_pred             CcceEEeccccCC-----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGN-----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm-----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+||++..-..     ..-..++++.+++.|+|||++++...
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            6999999954321     12236799999999999999988753

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.07  E-value=9.1e-10  Score=103.30  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-----  198 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-----  198 (535)
                      .++..+.++++|||||||++++|..+... ..++++|+++|+++.+           + . .+++++++|+.+..     
T Consensus        25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHhcccCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHH
Confidence            33445688999999999998887665544 4466799999999965           2 1 35789999986532     


Q ss_pred             ---cCCCCcceEEeccc---cCC--------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          199 ---EKLGEYDCIILAAL---AGN--------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       199 ---~dL~~FDvVfiaAL---Vgm--------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                         .+.+.||+|+.++.   .|.        .+....++..+.+.|+|||++++-
T Consensus        91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence               23346999998532   111        123478999999999999999984

>PRK06202 hypothetical protein; Provisional

Probab=99.06  E-value=2.1e-09  Score=103.72  Aligned_cols=102  Identities=18%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc---CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH---MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~---l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .++.+|||||||++ ..+..|++..   .++.+|+|+|+++++++.|++.....     +++++++++.+++...+.||+
T Consensus        59 ~~~~~iLDlGcG~G-~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGG-DLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCC-HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccE
Confidence            56789999999975 4555666521   34679999999999999999875443     357777776655555567999


Q ss_pred             EEeccccCC--hhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGN--EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm--~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |++....+.  .++...++.++.++++ |++++.
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~  165 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHN  165 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC-eeEEEe
Confidence            998755543  3345789999999988 444433

>PRK14967 putative methyltransferase; Provisional

Probab=99.05  E-value=2.3e-09  Score=103.49  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||+|||+ |.-++.+++.  ...+|+++|+|+.+++.|+++++..| +  +++++++|+.+.. ..+.||+|+
T Consensus        34 ~~~~~~vLDlGcG~-G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~-~~~~fD~Vi  106 (223)
T PRK14967         34 LGPGRRVLDLCTGS-GALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAV-EFRPFDVVV  106 (223)
T ss_pred             cCCCCeEEEecCCH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhc-cCCCeeEEE
Confidence            46789999999997 6677788772  33499999999999999999999888 4  6899999987643 335799999


Q ss_pred             eccccCC---------------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGN---------------------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm---------------------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.-...                     ......+++++.++|+|||++++-
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            8632110                     112456888999999999999873

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.05  E-value=1.8e-09  Score=114.34  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=87.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvV  207 (535)
                      ..+..|||||||. |.-++.+|++ .|+..|+|||+++.+++.|.+.+...| + .++.++++|+..+.  .+.+.||.|
T Consensus       121 ~~~p~vLEIGcGs-G~~ll~lA~~-~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        121 NQEKILIEIGFGS-GRHLLYQAKN-NPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             CCCCeEEEEcCcc-cHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCceeEE
Confidence            4567999999996 6666788884 689999999999999999999999988 5 57999999997653  234579999


Q ss_pred             EeccccCC-h-hh----HHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGN-E-EE----KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm-~-ed----K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+..-..+ . ..    ...+++.++++|+|||.+.+++-
T Consensus       197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            98644433 1 11    15799999999999999999875

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.04  E-value=1.4e-09  Score=109.17  Aligned_cols=116  Identities=22%  Similarity=0.347  Sum_probs=92.5

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      +|..+.......+|||+|||. |.-++++|++ .+.++|++||+++++++.|++.++-.+ ++++|+++++|+.++....
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHhhcccccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcc
Confidence            444455556689999999995 8888999985 455999999999999999999999988 8999999999998876544


Q ss_pred             --CCcceEEecccc-----------------CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 --GEYDCIILAALA-----------------GN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 --~~FDvVfiaALV-----------------gm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ..||+|++.--.                 ++ .-+-+.+++-..+.|||||.+.+-.
T Consensus       112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence              359999864211                 11 1235678888999999999988754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.04  E-value=2.5e-09  Score=109.50  Aligned_cols=137  Identities=23%  Similarity=0.267  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      +++=...+..+.  .++++|||||||+ |.-+|..++  +...+|+++|+||.+++.|+++++.-| +++++.+.  ...
T Consensus       148 T~lcl~~l~~~~--~~g~~vLDvG~GS-GILaiaA~k--lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~~~  219 (295)
T PF06325_consen  148 TRLCLELLEKYV--KPGKRVLDVGCGS-GILAIAAAK--LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--LSE  219 (295)
T ss_dssp             HHHHHHHHHHHS--STTSEEEEES-TT-SHHHHHHHH--TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--CTS
T ss_pred             HHHHHHHHHHhc--cCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--Eec
Confidence            334445555543  5789999999996 888888877  333479999999999999999999999 78888663  222


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCC
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPT  268 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~  268 (535)
                      +...  ..||+|+..-+.   ..-..++..+.++|+|||.+++.   |+-.--.+.+...+ .||++.....-.
T Consensus       220 ~~~~--~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G~lIlS---GIl~~~~~~v~~a~~~g~~~~~~~~~~  285 (295)
T PF06325_consen  220 DLVE--GKFDLVVANILA---DVLLELAPDIASLLKPGGYLILS---GILEEQEDEVIEAYKQGFELVEEREEG  285 (295)
T ss_dssp             CTCC--S-EEEEEEES-H---HHHHHHHHHCHHHEEEEEEEEEE---EEEGGGHHHHHHHHHTTEEEEEEEEET
T ss_pred             cccc--ccCCEEEECCCH---HHHHHHHHHHHHhhCCCCEEEEc---cccHHHHHHHHHHHHCCCEEEEEEEEC
Confidence            2222  679999975444   45677888899999999999983   32111111111111 399987665533

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.03  E-value=2.5e-09  Score=103.44  Aligned_cols=124  Identities=16%  Similarity=0.166  Sum_probs=82.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--------cC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--------EK  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--------~d  200 (535)
                      +.++.+||||||||+.+|. .++++..++++|++||+++ +          .+ . .+++|+++|+.+..        ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence            4678999999999966654 4555344568999999998 1          12 2 35899999998742        23


Q ss_pred             CCCcceEEeccccCC--hh--h-------HHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcCC
Q 041205          201 LGEYDCIILAALAGN--EE--E-------KAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHPT  268 (535)
Q Consensus       201 L~~FDvVfiaALVgm--~e--d-------K~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP~  268 (535)
                      .+.||+|+.+.....  .+  +       -..+|+.+.++|+|||.|++....+-+   ++.+-..+ ..|....+..|.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~---~~~~l~~l~~~f~~v~~~Kp~  191 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG---FDEYLREIRSLFTKVKVRKPD  191 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC---HHHHHHHHHhCceEEEEECCc
Confidence            456999998642211  01  1       156899999999999999996543311   00000022 578887888875


Q ss_pred             C
Q 041205          269 N  269 (535)
Q Consensus       269 ~  269 (535)
                      .
T Consensus       192 s  192 (209)
T PRK11188        192 S  192 (209)
T ss_pred             c
Confidence            5

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.03  E-value=2.9e-09  Score=104.09  Aligned_cols=107  Identities=25%  Similarity=0.378  Sum_probs=82.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||+|||+ |.-++.++. +.++++|+|+|+++.+++.|++++. .+ ...++.|+++|+.+.. ..+.||+|+
T Consensus       106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~-~~~~fD~Iv  180 (275)
T PRK09328        106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPL-PGGRFDLIV  180 (275)
T ss_pred             ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcC-CCCceeEEE
Confidence            35788999999996 667778877 4678999999999999999999988 33 3468999999986432 235799998


Q ss_pred             ecccc------------------------CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALA------------------------GN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALV------------------------gm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..--.                        |.  ...+..++.++.++|+|||.+++-.
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            73110                        00  2445788999999999999999854

>TIGR00417 speE spermidine synthase

Probab=99.02  E-value=4e-09  Score=105.29  Aligned_cols=110  Identities=20%  Similarity=0.300  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c-CCCeEEEEccccccccC-CCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I-EKRMKFLTCDIMEVKEK-LGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L-s~rI~Fi~GDA~el~~d-L~~FDv  206 (535)
                      ..+++||+||||. |.++..+++ +.+..+|+++|+|+++++.|++.+...+. + ..+++++.+|+.+.... .+.||+
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            5678999999996 555556656 34567999999999999999998765431 1 25899999998765433 246999


Q ss_pred             EEecccc--CChhh--HHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALA--GNEEE--KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALV--gm~ed--K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++...  +....  ..++++.+.+.|+|||++++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            9998763  21122  46889999999999999998743

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.01  E-value=1.4e-09  Score=115.09  Aligned_cols=108  Identities=17%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC----CCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK----LGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d----L~~F  204 (535)
                      .++++|||+|||+++++ +..+.  ....+|++||+|+.+++.|+++++..| ++ ++++|+++|+.+....    ...|
T Consensus       219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence            46899999999986664 44444  234599999999999999999999988 65 5899999999876532    2369


Q ss_pred             ceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+|+++--.-.         ...+..++....++|+|||+|++-+-
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99999833210         13567777788999999999998663

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=4.3e-09  Score=108.17  Aligned_cols=141  Identities=26%  Similarity=0.310  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      +.+=...+.++.  .++++|||+|||+ |.=||..++  +.-..|+|+|+||-|++.|+.+++.-| +...++....+..
T Consensus       149 T~lcL~~Le~~~--~~g~~vlDvGcGS-GILaIAa~k--LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~  222 (300)
T COG2264         149 TSLCLEALEKLL--KKGKTVLDVGCGS-GILAIAAAK--LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLL  222 (300)
T ss_pred             HHHHHHHHHHhh--cCCCEEEEecCCh-hHHHHHHHH--cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccch
Confidence            334445555544  4899999999995 888888877  333459999999999999999999988 5543434444443


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEEEEEcCCC
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVLSIFHPTN  269 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil~v~hP~~  269 (535)
                      +.+. .+.||+|+..-+.   ..-..+...+.+.++|||++++.   |+=.=-...|-.  .-.||++..+.+..+
T Consensus       223 ~~~~-~~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlS---GIl~~q~~~V~~a~~~~gf~v~~~~~~~e  291 (300)
T COG2264         223 EVPE-NGPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILS---GILEDQAESVAEAYEQAGFEVVEVLEREE  291 (300)
T ss_pred             hhcc-cCcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEE---eehHhHHHHHHHHHHhCCCeEeEEEecCC
Confidence            3222 1479999986555   46678999999999999999984   310000111111  236999988888765

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.98  E-value=6e-09  Score=108.28  Aligned_cols=103  Identities=18%  Similarity=0.253  Sum_probs=81.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ....+|||+|||+ |.-++.+++ ..++.+|+++|+|+.|++.|++.++..+ +  ..+++.+|+.+.  ..+.||+|+.
T Consensus       195 ~~~g~VLDlGCG~-G~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~--~~~~fDlIvs  267 (342)
T PRK09489        195 HTKGKVLDVGCGA-GVLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSD--IKGRFDMIIS  267 (342)
T ss_pred             cCCCeEEEeccCc-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEcccccc--cCCCccEEEE
Confidence            4456899999996 566667776 3678899999999999999999999988 4  357888887642  2356999998


Q ss_pred             ccccC--C---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAG--N---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVg--m---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .-..|  .   .....+++.++.++|+|||.+.+-
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence            64433  1   345689999999999999988764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.96  E-value=2.3e-09  Score=120.35  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=85.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccCC-CCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEKL-GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~dL-~~FDvV  207 (535)
                      .++++|||+|||+ |..++.+|.+  ...+|++||+|+.+++.|+++++..| ++ ++++|+++|+.+..... ..||+|
T Consensus       537 ~~g~rVLDlf~gt-G~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlI  612 (702)
T PRK11783        537 AKGKDFLNLFAYT-GTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLI  612 (702)
T ss_pred             cCCCeEEEcCCCC-CHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEE
Confidence            4589999999997 5556777772  23469999999999999999999988 65 68999999998765433 469999


Q ss_pred             Eecccc-----------CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALA-----------GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALV-----------gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +++--.           ....++..++..+.++|+|||++++-+
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            997321           013567889999999999999998854

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.96  E-value=9.1e-09  Score=101.92  Aligned_cols=105  Identities=11%  Similarity=0.087  Sum_probs=84.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-------h-----hcCCcCCCeEEEEcccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-------S-----SDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-------~-----~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .++.|||..||| -|.-+++||.   .|.+|+|+|+++.+++.+.+-.       .     ...  +.+|+|++||..++
T Consensus        42 ~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~--~~~i~~~~gD~f~l  115 (226)
T PRK13256         42 NDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK--GDDIEIYVADIFNL  115 (226)
T ss_pred             CCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceec--cCceEEEEccCcCC
Confidence            457899999999 5999999999   6889999999999999986621       0     011  25799999999987


Q ss_pred             cc---CCCCcceEEe-ccccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KE---KLGEYDCIIL-AALAGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~---dL~~FDvVfi-aALVgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..   ..+.||.||- ++++.+ ...+.++.+++.+.|+|||.+++-.
T Consensus       116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            53   2357999995 455556 7889999999999999999777654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.95  E-value=9.5e-09  Score=100.40  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=74.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..-.+++|+|||.+ .-+..||.+   -.+++++|+++.+++.||+..+..    .+|+|+++|+-+.. +.+.||+|.+
T Consensus        42 ~ry~~alEvGCs~G-~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~  112 (201)
T PF05401_consen   42 RRYRRALEVGCSIG-VLTERLAPR---CDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVL  112 (201)
T ss_dssp             SSEEEEEEE--TTS-HHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred             cccceeEecCCCcc-HHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEE
Confidence            45589999999964 444567773   368999999999999999987654    37999999986543 3467999998


Q ss_pred             ccccCC---hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGN---EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm---~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.....   .++...+++.+...|+|||.||+-++
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            754432   35677899999999999999999664

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.95  E-value=3.9e-09  Score=104.84  Aligned_cols=128  Identities=17%  Similarity=0.160  Sum_probs=90.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvVf  208 (535)
                      .+.+|||+|||+ |.-++.+++ ..++.+|+++|+|+++++.|+++++..|     ++|+++|+.+....  .+.||+|+
T Consensus        86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence            356999999997 555566666 3678899999999999999999998766     37899998764321  14699999


Q ss_pred             ecccc------C-C-------------------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCC-cc-ccCCcE
Q 041205          209 LAALA------G-N-------------------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV-EH-ELFDFK  260 (535)
Q Consensus       209 iaALV------g-m-------------------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~V-dp-dl~GFe  260 (535)
                      ++--.      + +                   ..-..+++..+.++|+|||.+++-....  .  .+.+ .. ...||+
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--~--~~~v~~~l~~~g~~  234 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--Q--APLAVEAFARAGLI  234 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--h--HHHHHHHHHHCCCC
Confidence            76311      0 0                   1124588888899999999999865321  1  1111 11 236888


Q ss_pred             EEEEEcCCC
Q 041205          261 VLSIFHPTN  269 (535)
Q Consensus       261 il~v~hP~~  269 (535)
                      .....|++-
T Consensus       235 ~~~~~~~~~  243 (251)
T TIGR03704       235 ARVASSEEL  243 (251)
T ss_pred             ceeeEcccc
Confidence            877888775

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.93  E-value=9.5e-09  Score=109.89  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvV  207 (535)
                      +.++.+|||||||+ |.-++.+++ ..++++|+++|+|++|++.|+++++..|   .+++|+++|..+... ..+.||+|
T Consensus       249 l~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~e~~l~~~~~FDLI  323 (423)
T PRK14966        249 LPENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWFDTDMPSEGKWDII  323 (423)
T ss_pred             cCCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchhccccccCCCccEE
Confidence            34567999999996 555677776 3678999999999999999999999887   389999999865322 22469999


Q ss_pred             Eecccc----------------------CC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALA----------------------GN---EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALV----------------------gm---~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +..--.                      |-   .+-+.++++++.++|+|||.+++-.
T Consensus       324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            984211                      10   1235678888889999999988744

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.88  E-value=3.2e-08  Score=102.06  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=82.7

Q ss_pred             hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC---cCCCe
Q 041205          111 NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE---IEKRM  187 (535)
Q Consensus       111 NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~---Ls~rI  187 (535)
                      ++...++.-...+.... ..++.+|||||||+ |..++.+++   .|.+|+|+|+++.|++.|++.++..+.   -..++
T Consensus       125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~  199 (315)
T PLN02585        125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLP  199 (315)
T ss_pred             ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccce
Confidence            44555443333333211 13578999999996 667788888   478999999999999999999877531   12478


Q ss_pred             EEEEccccccccCCCCcceEEeccc-cCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAAL-AGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaAL-Vgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|.++|..++   .+.||+|++... .|+ .+....++..+.+ +.+||+++.-.
T Consensus       200 ~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~  250 (315)
T PLN02585        200 KFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFA  250 (315)
T ss_pred             EEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeC
Confidence            9999997543   357999986533 344 3334567777775 56777766543

>PLN02823 spermine synthase

Probab=98.88  E-value=1.9e-08  Score=104.65  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=83.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-Cc-CCCeEEEEccccccccCC-CCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-EI-EKRMKFLTCDIMEVKEKL-GEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-~L-s~rI~Fi~GDA~el~~dL-~~FDv  206 (535)
                      ..+++||.||+| .|.++..+.+ +.+..+|+.||+|+++++.|++.+...+ .+ ..|++++.+|+.+..... +.||+
T Consensus       102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            468999999999 5777777766 4566899999999999999999876421 02 379999999998876543 46999


Q ss_pred             EEeccccCC--hhh----HHHHHH-HHHhhcccCeEEEEEc
Q 041205          207 IILAALAGN--EEE----KAKILG-HIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm--~ed----K~~VL~-eL~rvLKPGGvLVvRs  240 (535)
                      ||+|..-..  -+.    -.++++ .+.+.|+|||++++..
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            999954311  011    356887 8999999999998854

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.88  E-value=2.1e-08  Score=98.39  Aligned_cols=134  Identities=17%  Similarity=0.182  Sum_probs=92.7

Q ss_pred             HHHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205           88 EFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE  167 (535)
Q Consensus        88 h~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp  167 (535)
                      +|-.+=-++.-+|+.-+-.|....|..-           +...++.|||..||| -|+-+++||.   .|.+|+|||+++
T Consensus         5 ~W~~~w~~~~~~w~~~~~~p~L~~~~~~-----------l~~~~~~rvLvPgCG-~g~D~~~La~---~G~~VvGvDls~   69 (218)
T PF05724_consen    5 FWEERWQEGQTPWDQGEPNPALVEYLDS-----------LALKPGGRVLVPGCG-KGYDMLWLAE---QGHDVVGVDLSP   69 (218)
T ss_dssp             HHHHHHHTT--TT--TTSTHHHHHHHHH-----------HTTSTSEEEEETTTT-TSCHHHHHHH---TTEEEEEEES-H
T ss_pred             HHHHHHhcCCCCCCCCCCCHHHHHHHHh-----------cCCCCCCeEEEeCCC-ChHHHHHHHH---CCCeEEEEecCH
Confidence            3444444455666655555554333221           234678899999999 5899999999   689999999999


Q ss_pred             hHHHHHHHHHhh------cCC----cCCCeEEEEccccccccCC-CCcceEE-eccccCC-hhhHHHHHHHHHhhcccCe
Q 041205          168 TANNLARRIVSS------DDE----IEKRMKFLTCDIMEVKEKL-GEYDCII-LAALAGN-EEEKAKILGHIRKYMKEGG  234 (535)
Q Consensus       168 eAIelAR~li~~------lG~----Ls~rI~Fi~GDA~el~~dL-~~FDvVf-iaALVgm-~edK~~VL~eL~rvLKPGG  234 (535)
                      .|++.+.+-...      .+.    -..+|+|.+||..++.... +.||+|| -.+++.+ .+...++.+++.+.|+|||
T Consensus        70 ~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g  149 (218)
T PF05724_consen   70 TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGG  149 (218)
T ss_dssp             HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEE
T ss_pred             HHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCC
Confidence            999998443211      110    1247999999999877654 4699999 4455555 7899999999999999999


Q ss_pred             EE
Q 041205          235 VL  236 (535)
Q Consensus       235 vL  236 (535)
                      .+
T Consensus       150 ~~  151 (218)
T PF05724_consen  150 RG  151 (218)
T ss_dssp             EE
T ss_pred             cE
Confidence            93

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=1.2e-08  Score=100.82  Aligned_cols=109  Identities=18%  Similarity=0.278  Sum_probs=83.4

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE-EEEccccccc-cCCCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK-FLTCDIMEVK-EKLGE  203 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~-Fi~GDA~el~-~dL~~  203 (535)
                      +++-...-.||||||||+  +-+-+-. .-|+++||++|-++.|-+.|.+-+++.-  ..++. |+.|++.+++ -.+++
T Consensus        71 ~~gk~~K~~vLEvgcGtG--~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s  145 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTG--ANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGS  145 (252)
T ss_pred             HhcccCccceEEecccCC--CCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCC
Confidence            443233345799999976  3232212 2379999999999999999999988765  24666 9999999877 34467


Q ss_pred             cceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|+.. ++-+ .++..+.|+++.|+|||||++++-.
T Consensus       146 ~DtVV~T-lvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  146 YDTVVCT-LVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             eeeEEEE-EEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999875 4433 6899999999999999999998865

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.87  E-value=2.1e-08  Score=92.75  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=76.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +.+.++++|||||||++.+| ..+++   .+.+|+++|+|+.+++.+++.+...    .+++++++|+.++......||.
T Consensus         9 ~~~~~~~~vLEiG~G~G~lt-~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d~   80 (169)
T smart00650        9 ANLRPGDTVLEIGPGKGALT-EELLE---RAARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPYK   80 (169)
T ss_pred             cCCCCcCEEEEECCCccHHH-HHHHh---cCCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCCE
Confidence            44567889999999975555 55666   2689999999999999999988542    4899999999887655446999


Q ss_pred             EEeccccCChhhHHHHHHHHHhh--cccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRKY--MKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rv--LKPGGvLVvRsa  241 (535)
                      |+..-..+.   -..++..+.+.  +.+||++++-..
T Consensus        81 vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       81 VVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             EEECCCccc---HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            987644432   23455555443  347888888653

>PTZ00146 fibrillarin; Provisional

Probab=98.87  E-value=1.9e-08  Score=103.23  Aligned_cols=143  Identities=10%  Similarity=0.072  Sum_probs=92.1

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~F  204 (535)
                      .+.++++|||+|||| |+++..+|...-+...|++||+++.+.+.-...+...    .+|.++.+|+...   ......|
T Consensus       129 ~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        129 PIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             ccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCC
Confidence            468899999999997 6677788884344579999999987664444443321    4689999998641   1123469


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccc--cCCCCc-----c---ccCCcEEEEEEc--CCCcce
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAF--LYPVVE-----H---ELFDFKVLSIFH--PTNDVI  272 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~f--LYP~Vd-----p---dl~GFeil~v~h--P~~eVI  272 (535)
                      |+||++...  ..+...++.++.++|||||.|++.-.  .+.+  -.|+-+     .   .-.||++...++  |...- 
T Consensus       204 DvV~~Dva~--pdq~~il~~na~r~LKpGG~~vI~ik--a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~-  278 (293)
T PTZ00146        204 DVIFADVAQ--PDQARIVALNAQYFLKNGGHFIISIK--ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERD-  278 (293)
T ss_pred             CEEEEeCCC--cchHHHHHHHHHHhccCCCEEEEEEe--ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCC-
Confidence            999998643  13444555689999999999998311  1111  111101     0   125899887655  44422 


Q ss_pred             eeeEEEec
Q 041205          273 NSVVLLQL  280 (535)
Q Consensus       273 NSVVvARK  280 (535)
                      .++|+.+.
T Consensus       279 h~~v~~~~  286 (293)
T PTZ00146        279 HAVVIGVY  286 (293)
T ss_pred             cEEEEEEE
Confidence            34666554

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.86  E-value=2.5e-08  Score=99.18  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=83.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC--CcCCCeEEEEccccccccCCC--Ccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD--EIEKRMKFLTCDIMEVKEKLG--EYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG--~Ls~rI~Fi~GDA~el~~dL~--~FD  205 (535)
                      ..+++||.||.|. |.++-.+.+ |.+..+|+.||+|++.++.|++.+....  .-+.|++++.+|+........  .||
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            5799999999994 666666666 5556899999999999999999877532  113699999999987766543  599


Q ss_pred             eEEeccccCC-hhh---HHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGN-EEE---KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm-~ed---K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++++.-.. ...   -.++++.+.+.|+|||++++..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9999876532 122   4799999999999999999976

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.86  E-value=2.8e-08  Score=101.31  Aligned_cols=135  Identities=13%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVf  208 (535)
                      .++.+|||+|||+ |.-++.+|+   .+.+|+|||+++++++.|+++++..| + ++++|+++|+.++... .+.||+|+
T Consensus       172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence            3578999999996 566688888   57899999999999999999999999 6 6899999999876542 24699999


Q ss_pred             ecccc-CChhhHHHHHHHHHhhcccCeEEEEEc-ccccccccCCCCcc-ccCCcEEEE--EEc--CCCcceeeeEEEec
Q 041205          209 LAALA-GNEEEKAKILGHIRKYMKEGGVLLVRS-AKGARAFLYPVVEH-ELFDFKVLS--IFH--PTNDVINSVVLLQL  280 (535)
Q Consensus       209 iaALV-gm~edK~~VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~Vdp-dl~GFeil~--v~h--P~~eVINSVVvARK  280 (535)
                      ++--- |+   ...+++.+.+ ++|++++.+.- +..+..      |. .+.||++..  .++  |...-+-++++.++
T Consensus       246 ~dPPr~G~---~~~~~~~l~~-~~~~~ivyvsc~p~t~~r------d~~~l~~y~~~~~~~~DmFP~T~HvE~v~~l~r  314 (315)
T PRK03522        246 VNPPRRGI---GKELCDYLSQ-MAPRFILYSSCNAQTMAK------DLAHLPGYRIERVQLFDMFPHTAHYEVLTLLVR  314 (315)
T ss_pred             ECCCCCCc---cHHHHHHHHH-cCCCeEEEEECCcccchh------HHhhccCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence            98332 21   2234444443 67766554422 111100      11 224676643  222  55455567776654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.85  E-value=6.7e-09  Score=96.06  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             EEEeCChhHHHHHHHHHhh--cCCcCCCeEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          161 DNIDIDETANNLARRIVSS--DDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       161 tGIDIDpeAIelAR~li~~--lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +|+|+|++|++.|++..+.  .+ ...+|+|++||+.+++.+.+.||+|++....+..+++.+++++++|+|||||.|++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i   79 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI   79 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence            5899999999999876653  23 23689999999999888777899999875555468999999999999999999987


Q ss_pred             Ecc
Q 041205          239 RSA  241 (535)
Q Consensus       239 Rsa  241 (535)
                      -+.
T Consensus        80 ~d~   82 (160)
T PLN02232         80 LDF   82 (160)
T ss_pred             EEC
Confidence            653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=6.9e-08  Score=97.88  Aligned_cols=102  Identities=28%  Similarity=0.441  Sum_probs=81.6

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec---
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA---  210 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia---  210 (535)
                      +|+|||||+ |.=|+.+|. ..+.+.|+++|+|++|++.|++++...| + .++.++.+|..+-..  +.||+|+..   
T Consensus       113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence            899999996 777788888 5778999999999999999999999999 6 778888887654322  268888642   


Q ss_pred             --c-----------------ccC--C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 --A-----------------LAG--N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 --A-----------------LVg--m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        .                 +++  . .+-+.+++.++.++|+|||.+++...
T Consensus       187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence              1                 111  1 35678899999999999999999875

>PRK03612 spermidine synthase; Provisional

Probab=98.85  E-value=1e-08  Score=111.60  Aligned_cols=110  Identities=19%  Similarity=0.311  Sum_probs=81.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHH--HhhcC--Cc-CCCeEEEEccccccccCC-CC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRI--VSSDD--EI-EKRMKFLTCDIMEVKEKL-GE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i~~lG--~L-s~rI~Fi~GDA~el~~dL-~~  203 (535)
                      .++++||+||||. |.++..+++ +.+..+|++||+|+++++.|++.  +....  .+ +.+++++.+|+.+..... +.
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK  373 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence            5789999999995 667777766 33338999999999999999993  32211  02 258999999998755433 56


Q ss_pred             cceEEeccccCChh-----hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGNEE-----EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm~e-----dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|+++......+     -..++++.+.++|+|||++++...
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            99999985432111     124689999999999999998653

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.84  E-value=2.9e-08  Score=96.22  Aligned_cols=124  Identities=6%  Similarity=0.013  Sum_probs=84.6

Q ss_pred             hHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          112 YVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       112 Yv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      |.+.+..-.+.+...+ ....+.+|||+|||++.++...+++   ...+|++||+|+++++.++++++..| + ++++|+
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~  107 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVV  107 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEE
Confidence            3444444433333322 2246789999999975444334555   24799999999999999999999999 5 589999


Q ss_pred             EccccccccC-CCCcceEEeccccCChhhHHHHHHHHHhh--cccCeEEEEEcc
Q 041205          191 TCDIMEVKEK-LGEYDCIILAALAGNEEEKAKILGHIRKY--MKEGGVLLVRSA  241 (535)
Q Consensus       191 ~GDA~el~~d-L~~FDvVfiaALVgm~edK~~VL~eL~rv--LKPGGvLVvRsa  241 (535)
                      ++|+.+.... ...||+||++--... .-...+++.+...  ++|++++++...
T Consensus       108 ~~D~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        108 NTNALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             EchHHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            9999875432 235999999854211 1244556655553  788998888643

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.83  E-value=3e-08  Score=101.11  Aligned_cols=110  Identities=19%  Similarity=0.293  Sum_probs=88.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC--CcCCCeEEEEccccccccCCC-Ccce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD--EIEKRMKFLTCDIMEVKEKLG-EYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG--~Ls~rI~Fi~GDA~el~~dL~-~FDv  206 (535)
                      ..+++||-||.|. |.|+..+.+ |.+-.+++.||||++.++.||+.+....  ....|++++.+|+.++..+.. .||+
T Consensus        75 ~~pk~VLiiGgGd-G~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          75 PNPKRVLIIGGGD-GGTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCeEEEECCCc-cHHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            4558999999996 566666666 6778999999999999999999987643  224799999999998887665 4999


Q ss_pred             EEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++|+.-+-    .---..+++.+++.|+|||++++.+.
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            999976531    01238999999999999999999843

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.82  E-value=5.6e-08  Score=103.47  Aligned_cols=145  Identities=14%  Similarity=0.172  Sum_probs=95.0

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--  199 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--  199 (535)
                      .+...+.+.++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.+...  
T Consensus       288 ~vl~~l~~~~~~~VLDlgcGt-G~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        288 RALEWLDPQPGDRVLDLFCGL-GNFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHhcCCCCCEEEEEeccC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhh
Confidence            333344456789999999997 555677887   34799999999999999999999988 5 579999999976432  


Q ss_pred             --CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE-cccccccccCCCCcc-ccCCcEEEE--EEc--CCCcc
Q 041205          200 --KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR-SAKGARAFLYPVVEH-ELFDFKVLS--IFH--PTNDV  271 (535)
Q Consensus       200 --dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR-sa~GlR~fLYP~Vdp-dl~GFeil~--v~h--P~~eV  271 (535)
                        ..+.||+|+++---   ....+++..+.+ ++|++++.+- ++..+.+    .+.. .-.||++..  -++  |...-
T Consensus       362 ~~~~~~fD~Vi~dPPr---~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaR----Dl~~L~~~gY~l~~i~~~DmFP~T~H  433 (443)
T PRK13168        362 PWALGGFDKVLLDPPR---AGAAEVMQALAK-LGPKRIVYVSCNPATLAR----DAGVLVEAGYRLKRAGMLDMFPHTGH  433 (443)
T ss_pred             hhhcCCCCEEEECcCC---cChHHHHHHHHh-cCCCeEEEEEeChHHhhc----cHHHHhhCCcEEEEEEEeccCCCCCc
Confidence              12469999998433   112356666666 6888766553 2211100    0000 115787743  222  54455


Q ss_pred             eeeeEEEec
Q 041205          272 INSVVLLQL  280 (535)
Q Consensus       272 INSVVvARK  280 (535)
                      +-+|++.+|
T Consensus       434 vE~v~lL~r  442 (443)
T PRK13168        434 VESMALFER  442 (443)
T ss_pred             EEEEEEEEe
Confidence            577777665

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.77  E-value=6.8e-08  Score=102.03  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=80.2

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---  200 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---  200 (535)
                      ...+.+.++++|||+|||+ |..++.+|+   ...+|+|||+|+++++.|+++++..| + ++++|+++|+.+....   
T Consensus       285 ~~~l~~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~  358 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPW  358 (431)
T ss_pred             HHHhccCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHh
Confidence            3334456779999999996 677788988   34689999999999999999999988 5 6899999999764322   


Q ss_pred             -CCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEE
Q 041205          201 -LGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       201 -L~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                       ...||+|+++--- |+   ...+++.+.+ ++|++++.+
T Consensus       359 ~~~~~D~vi~dPPr~G~---~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       359 AGQIPDVLLLDPPRKGC---AAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             cCCCCCEEEECcCCCCC---CHHHHHHHHh-cCCCEEEEE
Confidence             2359999998442 32   4667776665 789886655

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.76  E-value=3.9e-09  Score=89.97  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             EEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEecc
Q 041205          136 AFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAA  211 (535)
Q Consensus       136 LeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaA  211 (535)
                      +|||+. .|.|++++++...++.  ++++||..+. .+.+++++++.+ +..+++|+++|..+....+  ..||+||+|+
T Consensus         1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            689997 6899999988544443  7999999997 556677777778 7789999999997765443  4799999997


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ... .+.....++.+.++|+|||++++++
T Consensus        78 ~H~-~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DHS-YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CCC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            642 3566778888999999999999976

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.76  E-value=2.2e-08  Score=97.56  Aligned_cols=107  Identities=23%  Similarity=0.419  Sum_probs=83.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE--
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII--  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf--  208 (535)
                      ...||||+|||- |.-..-|++.-+ ....+|||.+++++++|..++++.| +++.|+|.+.|+.+-.+..+.||+|+  
T Consensus        67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDK  143 (227)
T KOG1271|consen   67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDK  143 (227)
T ss_pred             cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeec
Confidence            445999999995 777788887434 3459999999999999999999999 78889999999986444446688887  


Q ss_pred             --ec--cccCC-hhhH-HHHHHHHHhhcccCeEEEEEc
Q 041205          209 --LA--ALAGN-EEEK-AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 --ia--ALVgm-~edK-~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .+  ++-++ ...| .-++..+.+.|+|||++++-+
T Consensus       144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS  181 (227)
T KOG1271|consen  144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS  181 (227)
T ss_pred             CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence              22  22234 2333 567888999999999999965

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.74  E-value=5e-08  Score=92.01  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK  198 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~  198 (535)
                      +..+...+  .++++|||||||++. .+..+++.  .+..++|||+++++++.|++    .     +++|+++|+.+ ++
T Consensus         4 ~~~i~~~i--~~~~~iLDiGcG~G~-~~~~l~~~--~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~   69 (194)
T TIGR02081         4 LESILNLI--PPGSRVLDLGCGDGE-LLALLRDE--KQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLE   69 (194)
T ss_pred             HHHHHHhc--CCCCEEEEeCCCCCH-HHHHHHhc--cCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhccc
Confidence            34444433  467899999999754 45666652  46789999999999988863    2     36889999865 22


Q ss_pred             -cCCCCcceEEeccccCChhhHHHHHHHHHhhcccC
Q 041205          199 -EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG  233 (535)
Q Consensus       199 -~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG  233 (535)
                       ...+.||+|++....+..++...+++++.+.++++
T Consensus        70 ~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        70 AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA  105 (194)
T ss_pred             ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeE
Confidence             33457999998766555578899999998876653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=1.5e-07  Score=97.21  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=87.0

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+..+++--.+++|||||||. ||=++.|+.+  ....|+|||-++-.+-..+-+-+-+| ....+.++---+.+++.
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~n-GY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~  179 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNN-GYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN  179 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCC-cHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc
Confidence            45566666446799999999995 8888999882  33469999999998887766666666 33344443234456665


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       .+.||+||.....=+..++...|.+++..|+|||.+++.+
T Consensus       180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence             7789999987655225889999999999999999999866

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.6e-07  Score=96.75  Aligned_cols=113  Identities=20%  Similarity=0.274  Sum_probs=85.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      .+|...+....+.+|||+|||. |.=++.+|+ ..|..+|+-+|+|..|++.||+++..-+ ++ +..+...|..+-..+
T Consensus       148 ~lLl~~l~~~~~~~vlDlGCG~-Gvlg~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~-~~~v~~s~~~~~v~~  223 (300)
T COG2813         148 RLLLETLPPDLGGKVLDLGCGY-GVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VE-NTEVWASNLYEPVEG  223 (300)
T ss_pred             HHHHHhCCccCCCcEEEeCCCc-cHHHHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CC-ccEEEEecccccccc
Confidence            5556666545566999999995 666677888 5789999999999999999999999888 44 336777777643332


Q ss_pred             CCCcceEEeccccCC--hh---hHHHHHHHHHhhcccCeEEEEE
Q 041205          201 LGEYDCIILAALAGN--EE---EKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       201 L~~FDvVfiaALVgm--~e---dK~~VL~eL~rvLKPGGvLVvR  239 (535)
                        .||+|+..--.|-  .-   --.+++....++|++||.|-+-
T Consensus       224 --kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         224 --KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             --cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence              7999998755532  11   2248999999999999966543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.70  E-value=1.9e-07  Score=97.74  Aligned_cols=100  Identities=11%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      .++.+|||+|||. |.-++.+|.   .+.+|+|||+|+.+++.|+++++..| + ++++|+++|+.+..... ..||+|+
T Consensus       232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence            4568999999996 555577776   56899999999999999999999999 5 58999999997755332 4599999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ++---  ..-...+++.+.+ ++|++++.+
T Consensus       306 ~DPPr--~G~~~~~l~~l~~-~~p~~ivyv  332 (374)
T TIGR02085       306 VNPPR--RGIGKELCDYLSQ-MAPKFILYS  332 (374)
T ss_pred             ECCCC--CCCcHHHHHHHHh-cCCCeEEEE
Confidence            98332  1123456666654 788876665

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.69  E-value=2e-07  Score=90.51  Aligned_cols=103  Identities=25%  Similarity=0.348  Sum_probs=81.0

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      .......+.++|+|||+|. |.-++-+++ .+|+.+++..|. |+.++.+++     .   +||+|+.||..+   +...
T Consensus        93 ~~~~d~~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f~---~~P~  158 (241)
T PF00891_consen   93 LEAFDFSGFKTVVDVGGGS-GHFAIALAR-AYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFFD---PLPV  158 (241)
T ss_dssp             HHHSTTTTSSEEEEET-TT-SHHHHHHHH-HSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TTT---CCSS
T ss_pred             hccccccCccEEEeccCcc-hHHHHHHHH-HCCCCcceeecc-Hhhhhcccc-----c---cccccccccHHh---hhcc
Confidence            3334557778999999996 555566666 489999999999 999999998     3   699999999863   2333


Q ss_pred             cceEEeccccCC--hhhHHHHHHHHHhhcccC--eEEEEEc
Q 041205          204 YDCIILAALAGN--EEEKAKILGHIRKYMKEG--GVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm--~edK~~VL~eL~rvLKPG--GvLVvRs  240 (535)
                      +|+|++...+|.  .++-..+|+++++.|+||  |+|++-+
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            999999877765  778889999999999999  9998866

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.68  E-value=1.8e-07  Score=89.95  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecccc
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALA  213 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV  213 (535)
                      +|+||||| .|+++|.+|= .+|+.+|+-+|-....+..=+..++.+| + ++++++++.+.+ ......||+|+.-|..
T Consensus        51 ~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv~  125 (184)
T PF02527_consen   51 KVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAVA  125 (184)
T ss_dssp             EEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESSS
T ss_pred             eEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehhc
Confidence            89999999 5999999988 6899999999999999999999999999 6 589999999987 3344579999998776


Q ss_pred             CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          214 GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       214 gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                          +-..+++-+.+.+++||.++.--
T Consensus       126 ----~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  126 ----PLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             ----SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ----CHHHHHHHHHHhcCCCCEEEEEc
Confidence                56799999999999999888743

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.65  E-value=1.8e-07  Score=101.32  Aligned_cols=135  Identities=13%  Similarity=0.107  Sum_probs=97.6

Q ss_pred             cccCccchhhHHhHHHHHHHHHH-hh--CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205          103 LNRFPYYENYVKLAKLEYGALIE-NT--GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS  179 (535)
Q Consensus       103 L~~FpYy~NYv~LirlE~~lL~~-~~--~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~  179 (535)
                      +...|+|..-.--++.+-..+.. .+  ...++++|||+++||+|-|+.+. ..+-..+.|+++|+++.++...++++++
T Consensus        82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la-~~l~~~g~lvA~D~~~~R~~~L~~nl~r  160 (470)
T PRK11933         82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIA-ALMNNQGAIVANEYSASRVKVLHANISR  160 (470)
T ss_pred             cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            34555553322233444444432 23  44789999999999988886554 4233457999999999999999999999


Q ss_pred             cCCcCCCeEEEEccccccccCC-CCcceEEecccc---CC-hhhH------------------HHHHHHHHhhcccCeEE
Q 041205          180 DDEIEKRMKFLTCDIMEVKEKL-GEYDCIILAALA---GN-EEEK------------------AKILGHIRKYMKEGGVL  236 (535)
Q Consensus       180 lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfiaALV---gm-~edK------------------~~VL~eL~rvLKPGGvL  236 (535)
                      +| + .+|.+.+.|+..+.... ..||.|++|+-=   || ..+.                  .++|.+..+.|||||+|
T Consensus       161 ~G-~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L  238 (470)
T PRK11933        161 CG-V-SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL  238 (470)
T ss_pred             cC-C-CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            99 5 67899999987654333 359999998653   44 2221                  67899999999999999


Q ss_pred             EEEc
Q 041205          237 LVRS  240 (535)
Q Consensus       237 VvRs  240 (535)
                      |+-+
T Consensus       239 VYST  242 (470)
T PRK11933        239 VYST  242 (470)
T ss_pred             EEEC
Confidence            8865

>PLN02672 methionine S-methyltransferase

Probab=98.61  E-value=2.4e-07  Score=108.61  Aligned_cols=108  Identities=20%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------------cCCCeEEEEcccccc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------------IEKRMKFLTCDIMEV  197 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------------Ls~rI~Fi~GDA~el  197 (535)
                      +.+|||||||+ |.-++.+|+ ..++++|+|+|+|+++++.|+++++..+.              +.++++|+++|..+.
T Consensus       119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence            56999999995 788888888 36778999999999999999999987540              225899999998765


Q ss_pred             ccCCC-CcceEEeccc--------------------------------cC----C--hhhHHHHHHHHHhhcccCeEEEE
Q 041205          198 KEKLG-EYDCIILAAL--------------------------------AG----N--EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       198 ~~dL~-~FDvVfiaAL--------------------------------Vg----m--~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ..+.+ .||+|+..--                                .|    -  ..-+.+++.+..++|+|||.+++
T Consensus       197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            43322 5888874211                                00    0  23357889999999999999998


Q ss_pred             Ecc
Q 041205          239 RSA  241 (535)
Q Consensus       239 Rsa  241 (535)
                      --+
T Consensus       277 EiG  279 (1082)
T PLN02672        277 NMG  279 (1082)
T ss_pred             EEC
Confidence            654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.60  E-value=5.1e-07  Score=86.43  Aligned_cols=108  Identities=13%  Similarity=-0.002  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---C-Ccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---G-EYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~-~FD  205 (535)
                      ..+.+|||++||++.++ +-++.+  ...+|++||+|+.+++.++++++..| +.++++++++|+.+....+   . .||
T Consensus        48 ~~g~~vLDLfaGsG~lg-lea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~d  123 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLG-EEALSR--GAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFDN  123 (189)
T ss_pred             cCCCEEEEecCCCcHHH-HHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCce
Confidence            45899999999975444 555552  22489999999999999999999999 7778999999997654322   2 389


Q ss_pred             eEEeccccCChhhHHHHHHHHHh--hcccCeEEEEEccc
Q 041205          206 CIILAALAGNEEEKAKILGHIRK--YMKEGGVLLVRSAK  242 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~r--vLKPGGvLVvRsa~  242 (535)
                      +||++--.+. .....++..+..  .+++||++++....
T Consensus       124 vv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       124 VIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9999855432 234555665544  68999999997643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.58  E-value=3.3e-07  Score=88.34  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=81.9

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcceEE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDCII  208 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDvVf  208 (535)
                      ..-++||||| .|-..+-+|. ..|+..++|||+....+..|.+.+.+.| + .++.|+++||..+..   +.+.+|-|+
T Consensus        18 ~~l~lEIG~G-~G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~~~l~~~~~~~~v~~i~   93 (195)
T PF02390_consen   18 NPLILEIGCG-KGEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDARELLRRLFPPGSVDRIY   93 (195)
T ss_dssp             CEEEEEET-T-TSHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred             CCeEEEecCC-CCHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHHHHHhhcccCCchheEE
Confidence            3489999999 5777788888 4789999999999999999999999999 4 899999999987443   335799999


Q ss_pred             eccccCC---hhh-----HHHHHHHHHhhcccCeEEEEEccc
Q 041205          209 LAALAGN---EEE-----KAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       209 iaALVgm---~ed-----K~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      +..--.+   ...     -..++..++++|+|||.|-+.+-+
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            8644332   111     257899999999999999998853

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.53  E-value=4.7e-07  Score=88.28  Aligned_cols=111  Identities=20%  Similarity=0.275  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..|...+...  +.+++.|+|.-|| +|+=++.+|+ +..+..|+++|++|.+++..+++++.-+ +.++|..+++|+.+
T Consensus        89 ~~Er~Ri~~~--v~~~e~VlD~faG-IG~f~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~  163 (200)
T PF02475_consen   89 STERRRIANL--VKPGEVVLDMFAG-IGPFSLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDARE  163 (200)
T ss_dssp             HHHHHHHHTC----TT-EEEETT-T-TTTTHHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG
T ss_pred             HHHHHHHHhc--CCcceEEEEccCC-ccHHHHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHH
Confidence            4676666553  4689999999999 5666677887 5678899999999999999999999999 88999999999998


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      +.. ...||.|++.-..    .-..+|....+.+++||++-
T Consensus       164 ~~~-~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  164 FLP-EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred             hcC-ccccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence            776 4679999995332    33478999999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.52  E-value=1.4e-06  Score=89.76  Aligned_cols=160  Identities=15%  Similarity=0.140  Sum_probs=110.4

Q ss_pred             HHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          113 VKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       113 v~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      ..+++.....+..   -..+-||+||.||++-|--=.+..  .|.  .+|.-.|.++..++.++++++..| +++-++|.
T Consensus       120 ~~~i~~ai~~L~~---~g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~  193 (311)
T PF12147_consen  120 EELIRQAIARLRE---QGRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFE  193 (311)
T ss_pred             HHHHHHHHHHHHh---cCCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEE
Confidence            3344444444432   257899999999987664434444  344  789999999999999999999999 77777999


Q ss_pred             Eccccccc--cCCC-CcceEEeccccCChhh---HHHHHHHHHhhcccCeEEEEEc--cccc-----ccc---cC--CCC
Q 041205          191 TCDIMEVK--EKLG-EYDCIILAALAGNEEE---KAKILGHIRKYMKEGGVLLVRS--AKGA-----RAF---LY--PVV  252 (535)
Q Consensus       191 ~GDA~el~--~dL~-~FDvVfiaALVgm~ed---K~~VL~eL~rvLKPGGvLVvRs--a~Gl-----R~f---LY--P~V  252 (535)
                      ++|+.+..  ..+. ..|++++..+....++   -.+-+..+.+.+.|||.+|+-.  .|.-     |.+   -.  |-|
T Consensus       194 ~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~Wv  273 (311)
T PF12147_consen  194 QGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWV  273 (311)
T ss_pred             ecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceE
Confidence            99998642  2223 3799999988766333   3456889999999999999976  2321     111   01  101


Q ss_pred             ---------cc--ccCCcEEEE-EEcCCCcceeeeEEEec
Q 041205          253 ---------EH--ELFDFKVLS-IFHPTNDVINSVVLLQL  280 (535)
Q Consensus       253 ---------dp--dl~GFeil~-v~hP~~eVINSVVvARK  280 (535)
                               |.  +.+||+... ++++.+  |+||-+|+|
T Consensus       274 MRrRsq~EmD~Lv~~aGF~K~~q~ID~~G--IFTVSlA~r  311 (311)
T PF12147_consen  274 MRRRSQAEMDQLVEAAGFEKIDQRIDEWG--IFTVSLARR  311 (311)
T ss_pred             EEecCHHHHHHHHHHcCCchhhheeccCC--ceEEEeecC
Confidence                     10  237998765 666665  588988876

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.52  E-value=3.6e-07  Score=94.84  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEE-cccccccc----CCCCc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLT-CDIMEVKE----KLGEY  204 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~-GDA~el~~----dL~~F  204 (535)
                      .+.+|||||||++++..++.++  .++++|+|+|+|+.+++.|+++++.. + +.++|+++. .|..++..    ..+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~--~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVH--EYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCce
Confidence            5689999999987777766655  46899999999999999999999998 7 788999964 44433332    23469


Q ss_pred             ceEEec
Q 041205          205 DCIILA  210 (535)
Q Consensus       205 DvVfia  210 (535)
                      |+|+..
T Consensus       191 DlivcN  196 (321)
T PRK11727        191 DATLCN  196 (321)
T ss_pred             EEEEeC
Confidence            999976

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.49  E-value=8e-07  Score=95.85  Aligned_cols=131  Identities=18%  Similarity=0.287  Sum_probs=87.3

Q ss_pred             cchhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHh--hcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC
Q 041205          108 YYENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILAS--QHMKSTHFDNIDIDETANNLARRIVSSDDEIE  184 (535)
Q Consensus       108 Yy~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk--~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls  184 (535)
                      .|+.|++.|..=+.....-.. ..++..|++||||.+|++...+..  ++....+|.+||.++.|+...++.++..| ++
T Consensus       162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~  240 (448)
T PF05185_consen  162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WG  240 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TT
T ss_pred             HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CC
Confidence            456677766332222211000 013578999999999998655521  11234699999999999999888888888 88


Q ss_pred             CCeEEEEccccccccCCCCcceEEeccc--cCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          185 KRMKFLTCDIMEVKEKLGEYDCIILAAL--AGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       185 ~rI~Fi~GDA~el~~dL~~FDvVfiaAL--Vgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+++.+|+.++..+ ..+|+|+..-+  .|.-+--.++|....|.|||||+++=..
T Consensus       241 ~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~  297 (448)
T PF05185_consen  241 DKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS  297 (448)
T ss_dssp             TTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred             CeEEEEeCcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence            9999999999887654 37999996522  2223455678999999999999886433

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.48  E-value=9.9e-07  Score=87.59  Aligned_cols=106  Identities=23%  Similarity=0.259  Sum_probs=88.4

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCcceEE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEYDCII  208 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~FDvVf  208 (535)
                      ..-++||||| .|-..+-+|+ ..|...++|||+....+..|-+.+.+.| + +++.++++||.+++..+   +..|-|+
T Consensus        49 ~pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l-~Nlri~~~DA~~~l~~~~~~~sl~~I~  124 (227)
T COG0220          49 APIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELG-L-KNLRLLCGDAVEVLDYLIPDGSLDKIY  124 (227)
T ss_pred             CcEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcC-C-CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence            3689999999 6888889999 5889999999999999999999999999 5 49999999998876533   4689999


Q ss_pred             eccccCC---hhh-----HHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGN---EEE-----KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm---~ed-----K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +..--.+   ...     ...+++.+.++|+|||.|-+.+-
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            8655444   112     35678999999999999999874

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.47  E-value=3.2e-07  Score=87.13  Aligned_cols=74  Identities=20%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC--C-cceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG--E-YDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~--~-FDvVfi  209 (535)
                      +.|+|+-|| .|.-+|.+|+   ...+|++||+|+..++.|+.+++-.| +.++|+|++||..++.....  . ||+||+
T Consensus         1 ~~vlD~fcG-~GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCG-VGGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-T-TSHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccC-cCHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            369999999 5778899999   46799999999999999999999999 88999999999998765443  2 899998


Q ss_pred             cc
Q 041205          210 AA  211 (535)
Q Consensus       210 aA  211 (535)
                      +-
T Consensus        76 SP   77 (163)
T PF09445_consen   76 SP   77 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            74

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=2.5e-06  Score=83.29  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +.-.++.|+|+|||+ |.=++-.+-  +...+|+|||+|+++++.+++++.+++   .++.|+++|+.+..   ..||.|
T Consensus        42 g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtv  112 (198)
T COG2263          42 GDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTV  112 (198)
T ss_pred             CCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceE
Confidence            446789999999996 555554433  444789999999999999999999955   68999999997543   568988


Q ss_pred             EeccccCC
Q 041205          208 ILAALAGN  215 (535)
Q Consensus       208 fiaALVgm  215 (535)
                      ++.--.|.
T Consensus       113 imNPPFG~  120 (198)
T COG2263         113 IMNPPFGS  120 (198)
T ss_pred             EECCCCcc
Confidence            88755553

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.41  E-value=2.3e-06  Score=84.10  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      +.|..++. ..+.+|||||||+ |-=+.++|+ ++|..+...-|.|+....--+..+...| +.+--.=+.-|+.+-.-+
T Consensus        16 ~vL~~~l~-~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~   91 (204)
T PF06080_consen   16 EVLKQYLP-DSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWP   91 (204)
T ss_pred             HHHHHHhC-ccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCc
Confidence            34444443 3333699999995 899999999 6999999999999999766666677767 432222334455433222


Q ss_pred             C--------CCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 L--------GEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L--------~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .        ..||.||...++|.  -+.-+.+|+.+.++|+|||+|++..+
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            2        36999999999985  78889999999999999999999764

The function of this family is unknown.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=1e-06  Score=87.06  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=85.6

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +++++|||||+ |++++-||= ..|+.+||=+|-....+..=+.+...+| + ++++++++.+.+.......||+|..-|
T Consensus        68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeEEehhhHhhcccccccCcEEEeeh
Confidence            79999999995 999999985 5789999999999999999999999999 4 789999999987664332299999987


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ..    .-..+++-+...+++||.++.
T Consensus       144 va----~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         144 VA----SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cc----chHHHHHHHHHhcccCCcchh
Confidence            76    567888889999999887654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.39  E-value=2e-06  Score=81.05  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=71.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-CcCCCeEEEEccccccc----cCCCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-EIEKRMKFLTCDIMEVK----EKLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-~Ls~rI~Fi~GDA~el~----~dL~~F  204 (535)
                      .++.+|||+||| .|+++|.+|. +..+++|+..|.++ .++..+.+++.-+ ....++++..-|-.+..    .....|
T Consensus        44 ~~~~~VLELGaG-~Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAG-TGLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             TTTSEEEETT-T-TSHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             cCCceEEEECCc-cchhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            578999999999 6999999999 34678999999999 9999999998754 12467888877653311    122469


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+.+-.+-..+....++.-+.+.++|+|.+++-.
T Consensus       121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999976444336778899999999999998766643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.38  E-value=1.2e-06  Score=85.49  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcce
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDv  206 (535)
                      +.+++||||+|||-+-+-+.+. +  ..+++..|||+|++.+..+.+    -|     +.++++|+.+-+  ++++.||+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~-~--~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLK-D--EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHH-H--hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHHHhHhhCCCCCccE
Confidence            4689999999999754333322 2  379999999999998754432    24     678999997644  35567999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++.-.+........+|+++.|+=+ -+++.+-+
T Consensus        79 VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPN  111 (193)
T PF07021_consen   79 VILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPN  111 (193)
T ss_pred             EehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecC
Confidence            9988666445778899999987633 34444444

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.37  E-value=1.7e-06  Score=90.40  Aligned_cols=95  Identities=12%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----------
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----------  201 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----------  201 (535)
                      +.+|||++||.+ .-++.+|+.   ..+|+|||+++.+++.|+++++..| + ++++|+++|+.+....+          
T Consensus       207 ~~~vLDl~~G~G-~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNG-NFTLALARN---FRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEecccc-HHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence            368999999964 445688882   3589999999999999999999989 5 58999999998754321          


Q ss_pred             ------CCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEE
Q 041205          202 ------GEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       202 ------~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                            ..||+||+|--- |   -..++++.+.+   |++++.+
T Consensus       281 ~~~~~~~~~D~v~lDPPR~G---~~~~~l~~l~~---~~~ivyv  318 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRAG---LDDETLKLVQA---YERILYI  318 (362)
T ss_pred             cccccCCCCCEEEECCCCCC---CcHHHHHHHHc---cCCEEEE
Confidence                  148999998322 2   23445555543   5554433

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.37  E-value=1.9e-06  Score=89.94  Aligned_cols=95  Identities=14%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC------C---C
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK------L---G  202 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d------L---~  202 (535)
                      +.+|||+|||+ |.-++.+|+.   ..+|+|||+++++++.|+++++..| + ++++|+++|+.++...      +   .
T Consensus       198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence            35799999996 5666788883   2589999999999999999999998 5 5799999999875432      1   1


Q ss_pred             -------CcceEEeccc-cCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          203 -------EYDCIILAAL-AGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       203 -------~FDvVfiaAL-Vgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                             .||+||+|-- .|+   ...+++.+.+   |++++.+
T Consensus       272 ~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~~---~~~ivYv  309 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQA---YERILYI  309 (353)
T ss_pred             ccccccCCCCEEEECCCCCCC---cHHHHHHHHc---CCcEEEE
Confidence                   3899999832 232   3455555543   5554444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.36  E-value=2.1e-06  Score=90.89  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +.+|||++||. |.=++.+|.. ....+|+++|+|+++++.++++++..| + +++++.++|+.++......||+|+++-
T Consensus        58 ~~~vLDl~aGs-G~~~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSAS-GIRGIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcc-cHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence            46999999996 5556777663 334589999999999999999999888 5 467899999977554234699999985


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      . |.   ...+++...+.+++||+|.+-.
T Consensus       134 ~-Gs---~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        134 F-GS---PAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             C-CC---cHHHHHHHHHHhcCCCEEEEEe
Confidence            4 53   4678888777899999998864

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.36  E-value=2e-06  Score=88.07  Aligned_cols=77  Identities=14%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+.++++|+|||||++.+|. .+++   .+.+|++||+|+.+++.+++.+...| ...+++++++|+.+.  ++..||+
T Consensus        32 ~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~--~~~~~d~  104 (294)
T PTZ00338         32 AAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKT--EFPYFDV  104 (294)
T ss_pred             cCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhh--cccccCE
Confidence            445788999999999866665 4555   35789999999999999999988777 457899999999764  3457998


Q ss_pred             EEec
Q 041205          207 IILA  210 (535)
Q Consensus       207 Vfia  210 (535)
                      |+..
T Consensus       105 VvaN  108 (294)
T PTZ00338        105 CVAN  108 (294)
T ss_pred             EEec
Confidence            8864

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.35  E-value=1.1e-06  Score=92.61  Aligned_cols=159  Identities=15%  Similarity=0.188  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHH
Q 041205           70 MRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSII  149 (535)
Q Consensus        70 l~~~Lr~lca~AE~~LE~h~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~  149 (535)
                      +.+.+-.++.......|..|...+..++-+       .+-.++...++.|--.+.+ .++.++.+++++||| +|-.+..
T Consensus        57 ~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~-------e~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~g-~~~~~~~  127 (364)
T KOG1269|consen   57 LPEQIAKYYNNSTDLYERNWGQSFHFGRIP-------EGNSNEMFWIRHEGIVALR-ESCFPGSKVLDVGTG-VGGPSRY  127 (364)
T ss_pred             cchHHHHHhcccchhhhhhhccchhccCcc-------chhHHHHHHHhhcchHHHh-hcCcccccccccCcC-cCchhHH
Confidence            345556666666788888888877666532       3334444444444333222 244678899999999 7888888


Q ss_pred             HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec-cccCChhhHHHHHHHHHh
Q 041205          150 LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA-ALAGNEEEKAKILGHIRK  228 (535)
Q Consensus       150 LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia-ALVgm~edK~~VL~eL~r  228 (535)
                      ++.  +.++.++|+|.++.-+.++.......+ +.+.-.|+.+|....+++.+.||.|++- +..| .++...++.++++
T Consensus       128 i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~-~~~~~~~y~Ei~r  203 (364)
T KOG1269|consen  128 IAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH-APDLEKVYAEIYR  203 (364)
T ss_pred             HHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEeeccc-CCcHHHHHHHHhc
Confidence            877  678999999999999999999988888 7888888999999989998999999953 3333 5899999999999


Q ss_pred             hcccCeEEEEEcc
Q 041205          229 YMKEGGVLLVRSA  241 (535)
Q Consensus       229 vLKPGGvLVvRsa  241 (535)
                      +++|||++++...
T Consensus       204 v~kpGG~~i~~e~  216 (364)
T KOG1269|consen  204 VLKPGGLFIVKEW  216 (364)
T ss_pred             ccCCCceEEeHHH
Confidence            9999999999664

>PHA03411 putative methyltransferase; Provisional

Probab=98.35  E-value=1.9e-06  Score=88.13  Aligned_cols=100  Identities=13%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|||+|||++.++ +.++. ..++.+|+++|+|+++++.|++++       .+++|+++|+.+... ...||+|+.
T Consensus        63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs  132 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS  132 (279)
T ss_pred             ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence            34679999999975454 44445 245789999999999999999863       257899999987643 256999998


Q ss_pred             ccccCC--hhhH------------------HHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGN--EEEK------------------AKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm--~edK------------------~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .--.+.  ..+.                  .+++..+..+|+|+|.+.+.
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            544321  1111                  34566667888888866665

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.34  E-value=6.3e-07  Score=90.20  Aligned_cols=133  Identities=23%  Similarity=0.301  Sum_probs=94.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FD  205 (535)
                      .+.+.+|||.=+| +|||||.-++   .|+ +|.+|+.||..+++|.-+==.-++.+.+|+++.||+.++..++  .+||
T Consensus       132 ~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD  207 (287)
T COG2521         132 VKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD  207 (287)
T ss_pred             cccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence            4679999999888 9999999988   688 9999999999999998662222334457999999999876654  4599


Q ss_pred             eEEec----cccCChhhHHHHHHHHHhhcccCeEEEEEccccc---ccccCC-CCcc--ccCCcEEEEEEc
Q 041205          206 CIILA----ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA---RAFLYP-VVEH--ELFDFKVLSIFH  266 (535)
Q Consensus       206 vVfia----ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl---R~fLYP-~Vdp--dl~GFeil~v~h  266 (535)
                      +|+-|    ++.| .---.+++++++|+|+|||.+.=..+...   |...-| -|..  ...||+++....
T Consensus       208 aIiHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~  277 (287)
T COG2521         208 AIIHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR  277 (287)
T ss_pred             eEeeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence            99976    2333 12357899999999999998854332221   111111 1221  237999866544

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.34  E-value=9e-07  Score=89.13  Aligned_cols=117  Identities=12%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             CCCC-EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLK-KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pk-RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.+. -++|||||+ |.|++.+|. |+  -+|+++|++++|+++|++.....- .....++...+..++....++.|+|.
T Consensus        31 ~~~h~~a~DvG~G~-Gqa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGN-GQAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             CCCcceEEEeccCC-CcchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeeh
Confidence            4443 899999997 599999999 45  589999999999999988755322 22344555555555555556799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCe-EEEEEcccccccccCCCCc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGG-VLLVRSAKGARAFLYPVVE  253 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGG-vLVvRsa~GlR~fLYP~Vd  253 (535)
                      .+-.+|+ =+-++++.++.|+||+.| ++++=...- -.+.+|.++
T Consensus       106 ~Aqa~HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~d-d~v~~pE~d  149 (261)
T KOG3010|consen  106 AAQAVHW-FDLERFYKEAYRVLRKDGGLIAVWNYND-DFVDWPEFD  149 (261)
T ss_pred             hhhhHHh-hchHHHHHHHHHHcCCCCCEEEEEEccC-CCcCCHHHH
Confidence            9877776 567899999999999876 766633221 124555444

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.33  E-value=2.2e-06  Score=91.32  Aligned_cols=109  Identities=19%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----CCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----GEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~~F  204 (535)
                      ..+++||++=|=++|+| +..|.   .|+ +||+||+|..++++|+++++-.|.-.+++.|+++|+.++....    ..|
T Consensus       216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            34999999999765555 55555   677 9999999999999999999998832478999999998876533    259


Q ss_pred             ceEEecccc------C-C--hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          205 DCIILAALA------G-N--EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       205 DvVfiaALV------g-m--~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      |+|++|--.      + .  ..++.+++..+.+.|+|||++++-+-.
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            999998321      1 1  578899999999999999999997743

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.33  E-value=2.5e-06  Score=84.85  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=58.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +++.++++|||||||++.+| +.++++   +.+|++||+|+.+++.+++.+...    .+++++++|+.++.  +..||.
T Consensus        25 ~~~~~~~~VLEIG~G~G~lt-~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~   94 (258)
T PRK14896         25 AEDTDGDPVLEIGPGKGALT-DELAKR---AKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK   94 (258)
T ss_pred             cCCCCcCeEEEEeCccCHHH-HHHHHh---CCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence            34567899999999975555 566662   579999999999999999887552    48999999998754  346898


Q ss_pred             EEec
Q 041205          207 IILA  210 (535)
Q Consensus       207 Vfia  210 (535)
                      |+..
T Consensus        95 Vv~N   98 (258)
T PRK14896         95 VVSN   98 (258)
T ss_pred             EEEc
Confidence            8764

>PRK00536 speE spermidine synthase; Provisional

Probab=98.32  E-value=3.8e-06  Score=85.16  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=77.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..|+|||-||.|- |.|+.-+.+ | + .+|+-||||+++++.+++.+...  +.-+.|++++.. ..+  ...+.||+|
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLk-h-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHC-c-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence            6789999999995 777777778 3 4 49999999999999999965542  211368888762 211  112469999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++|++.     ...+++.+.+.|+|||++++.+.
T Consensus       144 IvDs~~-----~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        144 ICLQEP-----DIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEcCCC-----ChHHHHHHHHhcCCCcEEEECCC
Confidence            999775     36888999999999999999765

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.32  E-value=3.1e-06  Score=86.73  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CCCEEEEEccCCC--hhhHHHHHhhcCC----CcEEEEEeCChhHHHHHHHHH------------------hh-----cC
Q 041205          131 QLKKVAFVGSGPM--PLTSIILASQHMK----STHFDNIDIDETANNLARRIV------------------SS-----DD  181 (535)
Q Consensus       131 ~pkRVLeIGSGpl--PlTAI~LAk~~l~----Ga~VtGIDIDpeAIelAR~li------------------~~-----lG  181 (535)
                      .+-||.-.||+++  |||--++.....+    +.+|+|+|||+.+++.|++-+                  .+     .|
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            3579999999865  5775554443221    468999999999999999852                  11     01


Q ss_pred             ------CcCCCeEEEEccccccccC-CCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          182 ------EIEKRMKFLTCDIMEVKEK-LGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       182 ------~Ls~rI~Fi~GDA~el~~d-L~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                            .+.++|+|...|..+.+.+ .+.||+||+-+... . .+.+.++++.+++.|+|||+|++-..
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence                  0447899999999764332 46799999876553 3 68899999999999999999988554

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.30  E-value=2.6e-06  Score=86.22  Aligned_cols=108  Identities=16%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC---------------------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE---------------------------  182 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~---------------------------  182 (535)
                      -.+..+|||||.. |.-++.+|+ ++....|.|+|||+..|..||+.++.--+                           
T Consensus        57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            4578999999985 677788999 45556799999999999999998775321                           


Q ss_pred             ------cCCCeEEEEcccc----ccc-cCCCCcceEEecccc---CC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          183 ------IEKRMKFLTCDIM----EVK-EKLGEYDCIILAALA---GN---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       183 ------Ls~rI~Fi~GDA~----el~-~dL~~FDvVfiaALV---gm---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                            +.+++.|...+-.    +++ .....||+|+.-+.-   |+   -+.-.++|.++.++|.|||+||+-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                  1123333333321    111 122459999965542   32   578899999999999999999985

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.30  E-value=3.4e-06  Score=87.86  Aligned_cols=110  Identities=19%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------cCCCeEEEEccccccc----
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------IEKRMKFLTCDIMEVK----  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------Ls~rI~Fi~GDA~el~----  198 (535)
                      ++.+|||+|||-+|=.-=|...   .-..++|+||++++|+.|++..+....        ..-...|+++|.....    
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred             CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence            7899999999987766555533   457999999999999999998832110        1124578899886321    


Q ss_pred             cCC--CCcceEEeccccCC---hhhHHH-HHHHHHhhcccCeEEEEEcccc
Q 041205          199 EKL--GEYDCIILAALAGN---EEEKAK-ILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       199 ~dL--~~FDvVfiaALVgm---~edK~~-VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ...  ..||+|=+....|.   -+++.+ +|..+...|+|||+++.-.+++
T Consensus       139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence            111  36999987655542   566666 9999999999999999877654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.28  E-value=9.9e-06  Score=75.01  Aligned_cols=93  Identities=16%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             CCCCEEEEEccCCChh-hHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceE
Q 041205          130 AQLKKVAFVGSGPMPL-TSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPl-TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvV  207 (535)
                      .++++|++|||| .|+ .|..|++   .|..|+++|+|+++++.|++.    +     +.++++|..+-...+ .++|+|
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEE
Confidence            457899999999 565 7778877   689999999999999888665    4     478999997654443 579999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.--.-   ++-...+.++++.+  |+-++++.
T Consensus        82 ysirpp---~el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         82 YSIRPP---RDLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             EEeCCC---HHHHHHHHHHHHHc--CCCEEEEc
Confidence            975333   56666666676643  55555554

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3e-06  Score=84.09  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcC--------CcCCCeEEEEcccccccc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDD--------EIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG--------~Ls~rI~Fi~GDA~el~~  199 (535)
                      +.++-+.|+||||+ ||-+-|+|.-. .+|..++|||.-++.++.|++++.+.-        .-..+..|+.||+...-.
T Consensus        80 L~pG~s~LdvGsGS-GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGS-GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCc-cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            47899999999996 67667777522 356666999999999999999987643        012478999999987666


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +...||.|++-|.+      .++.+.+...|+|||.+++-
T Consensus       159 e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  159 EQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence            66789999997666      34455666688998887773

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.24  E-value=3.6e-06  Score=84.42  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+.+.++++|||||||++.+| ..++++   +.+|+|+|+|+++++.+++.+..     .+++++++|+.++..+.-.+|
T Consensus        37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~~---~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         37 AAGPQPGDNVLEIGPGLGALT-EPLLER---AAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             hcCCCCcCeEEEeCCCccHHH-HHHHHh---CCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcc
Confidence            345578899999999985555 566662   35999999999999999987632     479999999987643211135


Q ss_pred             eEEe
Q 041205          206 CIIL  209 (535)
Q Consensus       206 vVfi  209 (535)
                      .|+.
T Consensus       108 ~vv~  111 (272)
T PRK00274        108 KVVA  111 (272)
T ss_pred             eEEE
Confidence            5554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=9.9e-06  Score=83.10  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=92.2

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.|+.+|+|-|+|.+++| ..+|+...|-++++..|+.+.+.+.|++-+++.| +++++++.+-|+-...+
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCc
Confidence            455556667899999999999987666 5667766788999999999999999999999999 89999999999876555


Q ss_pred             CC--CCcceEEeccccCChhhHHHHHHHHHhhcccCe-EEEE
Q 041205          200 KL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGG-VLLV  238 (535)
Q Consensus       200 dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGG-vLVv  238 (535)
                      ..  ..+|.||+|-     +.+...+-++++++|.+| +|+.
T Consensus       172 ~~ks~~aDaVFLDl-----PaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  172 LIKSLKADAVFLDL-----PAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             cccccccceEEEcC-----CChhhhhhhhHHHhhhcCceEEe
Confidence            55  3499999983     357788889999999877 4444

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.23  E-value=1.1e-05  Score=76.53  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             HHhhCCCCCCEEEEEccCC--ChhhHHHHHhhcCC-----CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          124 IENTGVAQLKKVAFVGSGP--MPLTSIILASQHMK-----STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGp--lPlTAI~LAk~~l~-----Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      .......++..|+|-=||+  +++-+..++....|     ...+.|+|+|+++++.|+++++..| +...|.|.++|+.+
T Consensus        21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~   99 (179)
T PF01170_consen   21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE   99 (179)
T ss_dssp             HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG
T ss_pred             HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh
Confidence            3344567889999866654  33334444441111     1239999999999999999999999 78899999999999


Q ss_pred             cccCCCCcceEEeccccCC-h-------hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGN-E-------EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm-~-------edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...+.+|+|+.+--.|. .       .-+..+++++.+++++..++++-..
T Consensus       100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~  152 (179)
T PF01170_consen  100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN  152 (179)
T ss_dssp             GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred             cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            8855567999999876664 2       2345678888999999767766554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.21  E-value=1.8e-05  Score=81.47  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE----Eccccccc-cCCCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL----TCDIMEVK-EKLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi----~GDA~el~-~dL~~F  204 (535)
                      .++..|||+|||.+.+|.-+++.  ++.++|++||.++.|+.+|.+++.+++ +.++|.++    ++|+.+-. ..++.+
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~--L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~~me~d~~~~~~l~~~~~  223 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHG--LPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHNIMESDASDEHPLLEGKI  223 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhc--CCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEecccccccccccccccCce
Confidence            45679999999986666555544  789999999999999999999999999 78999988    55654322 122457


Q ss_pred             ceEEe
Q 041205          205 DCIIL  209 (535)
Q Consensus       205 DvVfi  209 (535)
                      |+++.
T Consensus       224 dllvs  228 (328)
T KOG2904|consen  224 DLLVS  228 (328)
T ss_pred             eEEec
Confidence            77654

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.20  E-value=1.6e-05  Score=78.65  Aligned_cols=69  Identities=22%  Similarity=0.341  Sum_probs=53.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      +...++++|||||||++.+|. .|+++   +..|+++|+|+++++.+++.+..    ..+++++++|+.+.+..  .||
T Consensus        25 ~~~~~~~~VLEiG~G~G~lt~-~L~~~---~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--~~d   93 (253)
T TIGR00755        25 ANVLEGDVVLEIGPGLGALTE-PLLKR---AKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--DFP   93 (253)
T ss_pred             cCCCCcCEEEEeCCCCCHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--HcC
Confidence            445778999999999866665 45552   35799999999999999987754    25799999999876543  455

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PHA03412 putative methyltransferase; Provisional

Probab=98.18  E-value=1.1e-05  Score=81.26  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcC--CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHM--KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l--~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+.+|||+|||+ |.-++.++++..  +..+|++||+|+.+++.|++++.       ++.|+++|+.+... .+.||+|+
T Consensus        49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAI  119 (241)
T ss_pred             CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEE
Confidence            367999999996 555566665321  45799999999999999997742       47899999875443 34799999


Q ss_pred             eccccCC------------hhhHHHHHHHHHhhcccCeEE
Q 041205          209 LAALAGN------------EEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       209 iaALVgm------------~edK~~VL~eL~rvLKPGGvL  236 (535)
                      ..--.+.            ..--..+++...+.++||+.|
T Consensus       120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I  159 (241)
T PHA03412        120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI  159 (241)
T ss_pred             ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence            6522211            122456888888877777763

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.17  E-value=9.7e-06  Score=84.61  Aligned_cols=96  Identities=21%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             cchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          108 YYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       108 Yy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      ||..-....+.-+......++..++ +|+|+=|| +|.-++.||+   ...+|+|||+++++++.|+++++..| + +++
T Consensus       174 FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~-i-~n~  246 (352)
T PF05958_consen  174 FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNG-I-DNV  246 (352)
T ss_dssp             ---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SE
T ss_pred             CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcC-C-Ccc
Confidence            3433333444445555555654444 89999999 5777789988   56899999999999999999999999 5 789


Q ss_pred             EEEEccccccccC--------------C--CCcceEEec
Q 041205          188 KFLTCDIMEVKEK--------------L--GEYDCIILA  210 (535)
Q Consensus       188 ~Fi~GDA~el~~d--------------L--~~FDvVfia  210 (535)
                      +|+++++.++...              +  ..+|+|++|
T Consensus       247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilD  285 (352)
T PF05958_consen  247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILD  285 (352)
T ss_dssp             EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE-
T ss_pred             eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEc
Confidence            9999988765321              1  147999998

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.16  E-value=1.7e-05  Score=81.37  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=79.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC---CCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK---LGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d---L~~F  204 (535)
                      ..+++||++=|=++|+|.- .|.   .|+ +|++||.|..+++.|+++++.-| ++ ++++|+++|+.+....   -+.|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence            4589999999987777753 334   465 79999999999999999999888 55 7899999999875432   2469


Q ss_pred             ceEEeccc--c-C-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAAL--A-G-N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaAL--V-g-m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++|--  . + .  ..++.+++..+.+.++|||.|++-+
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            99999832  1 2 1  5688899999999999999988755

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.15  E-value=1.1e-05  Score=80.88  Aligned_cols=120  Identities=17%  Similarity=0.302  Sum_probs=83.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEcccc-ccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIM-EVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~-el~~dL~~FDvV  207 (535)
                      ..+.=|||||||+ |+|+-.+..   +|-..+|+|||+.|++.|.+ .++  |      .++.+|-- -+++..+.||-|
T Consensus        49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e~e--g------dlil~DMG~GlpfrpGtFDg~  116 (270)
T KOG1541|consen   49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVERELE--G------DLILCDMGEGLPFRPGTFDGV  116 (270)
T ss_pred             CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHhhhh--c------CeeeeecCCCCCCCCCccceE
Confidence            3578999999995 899888866   78899999999999999996 222  4      24445543 356666789988


Q ss_pred             EeccccCC-----------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--c-------cCCcEEE-EEEc
Q 041205          208 ILAALAGN-----------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--E-------LFDFKVL-SIFH  266 (535)
Q Consensus       208 fiaALVgm-----------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--d-------l~GFeil-~v~h  266 (535)
                      +.-+.+.+           ..--..++..++..|++|++-++-        .||..+.  |       .+||.-- .+-+
T Consensus       117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q--------fYpen~~q~d~i~~~a~~aGF~GGlvVd~  188 (270)
T KOG1541|consen  117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ--------FYPENEAQIDMIMQQAMKAGFGGGLVVDW  188 (270)
T ss_pred             EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE--------ecccchHHHHHHHHHHHhhccCCceeeec
Confidence            85555432           122246788899999999988874        5665443  2       2677543 3445


Q ss_pred             CCC
Q 041205          267 PTN  269 (535)
Q Consensus       267 P~~  269 (535)
                      |..
T Consensus       189 Pes  191 (270)
T KOG1541|consen  189 PES  191 (270)
T ss_pred             ccc
Confidence            654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.13  E-value=7.7e-06  Score=82.65  Aligned_cols=176  Identities=12%  Similarity=0.046  Sum_probs=108.4

Q ss_pred             chhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhh--hHHHhHhhccCCCccccccCccchhhHHh
Q 041205           38 SKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLE--LEFATYLSKISLPLNDLNRFPYYENYVKL  115 (535)
Q Consensus        38 S~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE--~h~A~~Lls~~~pl~~L~~FpYy~NYv~L  115 (535)
                      -..+++.-.+|-..|.--.+     -.|+...+...|+.  +.+.+.-|  +.|.+.+++...+..     .+++++..+
T Consensus        28 k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST~-----ERl~~Ld~f   95 (251)
T PF07091_consen   28 KEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHASTR-----ERLPNLDEF   95 (251)
T ss_dssp             HHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHHH-----CCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccchh-----hhhhhHHHH
Confidence            35588888888888875331     13456666666666  22222222  344566666654322     344556666


Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      ....++.      +.++.+|+|||||--|++..||..  .+++.++|+|||..+++.....+..+| .  +.++...|..
T Consensus        96 Y~~if~~------~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~-~--~~~~~v~Dl~  164 (251)
T PF07091_consen   96 YDEIFGR------IPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLG-V--PHDARVRDLL  164 (251)
T ss_dssp             HHHHCCC------S---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred             HHHHHhc------CCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhC-C--CcceeEeeee
Confidence            6555553      356999999999999999999965  688999999999999999999999998 3  5677777875


Q ss_pred             ccccCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEE
Q 041205          196 EVKEKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      .-+ +-...|+.++.=.+++ ..++...--.+.+.++-.-++|
T Consensus       165 ~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~~~vV  206 (251)
T PF07091_consen  165 SDP-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSPHVVV  206 (251)
T ss_dssp             TSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCESEEEE
T ss_pred             ccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCCeEEE
Confidence            422 2234899998655544 3334444344444454444444

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.11  E-value=9e-06  Score=77.91  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             hhHHhHHHHHHHHHHhhC-C-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE
Q 041205          111 NYVKLAKLEYGALIENTG-V-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK  188 (535)
Q Consensus       111 NYv~LirlE~~lL~~~~~-l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~  188 (535)
                      +..+....=.+.+...+. . -.+.+|||+=||++.+..=.+.+   ...+|+.||.|++++..-+++++.+| +.++++
T Consensus        20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~   95 (183)
T PF03602_consen   20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIR   95 (183)
T ss_dssp             TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEE
T ss_pred             CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCccee
Confidence            344444444444444342 1 46899999976654444334444   34689999999999999999999999 777899


Q ss_pred             EEEccccccccC----CCCcceEEeccccCChhh-HHHHHHHHH--hhcccCeEEEEEcc
Q 041205          189 FLTCDIMEVKEK----LGEYDCIILAALAGNEEE-KAKILGHIR--KYMKEGGVLLVRSA  241 (535)
Q Consensus       189 Fi~GDA~el~~d----L~~FDvVfiaALVgm~ed-K~~VL~eL~--rvLKPGGvLVvRsa  241 (535)
                      ++++|+......    ...||+||+|--... .. ...+++.+.  ..|++||+|++-..
T Consensus        96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen   96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEESSHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             eeccCHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            999998765532    356999999955433 23 478888887  78999999999764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.10  E-value=6.8e-06  Score=79.82  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             CCCCEEEEEccCCC--hhhHHHHHhhc---CC--CcEEEEEeCChhHHHHHHHH------Hh-------------hcC--
Q 041205          130 AQLKKVAFVGSGPM--PLTSIILASQH---MK--STHFDNIDIDETANNLARRI------VS-------------SDD--  181 (535)
Q Consensus       130 ~~pkRVLeIGSGpl--PlTAI~LAk~~---l~--Ga~VtGIDIDpeAIelAR~l------i~-------------~lG--  181 (535)
                      .++-||.-.||+++  |||..++....   ..  ..+|+|.|+|+.+++.|++-      ++             ..|  
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            36789999999875  56655555431   11  47999999999999999863      11             111  


Q ss_pred             -----CcCCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          182 -----EIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       182 -----~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                           .+.++|+|...|..+.....+.||+||+-...- + .+.+.++++.+++.|+|||.|++-....
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~  178 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES  178 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence                 024689999999988334456799999887653 3 7889999999999999999999966543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.09  E-value=2.5e-05  Score=76.54  Aligned_cols=124  Identities=11%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHh-------hcCC
Q 041205          111 NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVS-------SDDE  182 (535)
Q Consensus       111 NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~-------~lG~  182 (535)
                      .|.++.-.-+..+...+++.+.+..+||||| +|-..+..|-  ..+++ .+|||+.+...+.|+...+       ..|.
T Consensus        22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG-~G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~   98 (205)
T PF08123_consen   22 TYGEISPEFVSKILDELNLTPDDVFYDLGSG-VGNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK   98 (205)
T ss_dssp             CGGGCHHHHHHHHHHHTT--TT-EEEEES-T-TSHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred             ceeecCHHHHHHHHHHhCCCCCCEEEECCCC-CCHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence            4777766666666666778899999999999 6777666665  35666 9999999999999986543       3452


Q ss_pred             cCCCeEEEEcccccccc---CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          183 IEKRMKFLTCDIMEVKE---KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       183 Ls~rI~Fi~GDA~el~~---dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -..++++..||..+...   .+.+-|+||+.+.. ..++-..-|......||||.+||.
T Consensus        99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen   99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             ccccceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence            13578999999865321   23567999998665 225666666788888999999886

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.09  E-value=1.1e-05  Score=83.03  Aligned_cols=80  Identities=20%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----CCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----GEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~~F  204 (535)
                      +.++..++|.+||.+|.|..++.. ..++++|+|+|+|++|++.|++.+.. +   ++++|+++|..++...+    ..|
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~~~v   91 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGLGKV   91 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCCCcc
Confidence            467889999999988888766633 33478999999999999999988765 3   68999999988754322    258


Q ss_pred             ceEEecccc
Q 041205          205 DCIILAALA  213 (535)
Q Consensus       205 DvVfiaALV  213 (535)
                      |.|+++-.+
T Consensus        92 DgIl~DLGv  100 (296)
T PRK00050         92 DGILLDLGV  100 (296)
T ss_pred             CEEEECCCc
Confidence            888887655

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.08  E-value=7.2e-05  Score=58.93  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cccCC-CCcceEEecc
Q 041205          135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VKEKL-GEYDCIILAA  211 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~~dL-~~FDvVfiaA  211 (535)
                      |+++|||+ |... .++.....+..++|+|+++.+++.++......+ . ..+.+..+|...  .+... ..||++....
T Consensus        52 ~ld~~~g~-g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGT-GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCc-CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            99999996 4443 444411222589999999999999666554422 1 117888888765  34433 2699994433


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..+... ....+.++.+.++|||.+++...
T Consensus       128 ~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLLP-PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence            332222 79999999999999999988765

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.07  E-value=2.4e-05  Score=82.22  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=77.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +-.++.|||||||+ |.=+++-|++  ...+|++||.+.-+ +.|++++..-| +++.|+++.|.+.++.-+....|+|+
T Consensus        58 lf~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIv  132 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIV  132 (346)
T ss_pred             hcCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEe
Confidence            45689999999996 6666777773  35789999999777 99999999999 88999999999998755556799998


Q ss_pred             eccccCChhhHHHHHHHH----HhhcccCeEEEE
Q 041205          209 LAALAGNEEEKAKILGHI----RKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL----~rvLKPGGvLVv  238 (535)
                      .. -.|.---++..|+.+    -+.|+|||++.=
T Consensus       133 SE-WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  133 SE-WMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             eh-hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            65 223111122333332    467999998753

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.06  E-value=4.9e-05  Score=74.45  Aligned_cols=136  Identities=19%  Similarity=0.266  Sum_probs=89.1

Q ss_pred             EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccC
Q 041205          135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAG  214 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg  214 (535)
                      |+||||- -||-++.|.++ -.-.+++++|+++.-++.|++.+++.| +.++|+++.||+.+...+..+.|.|+++.+ |
T Consensus         1 vaDIGtD-HgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-G   76 (205)
T PF04816_consen    1 VADIGTD-HGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-G   76 (205)
T ss_dssp             EEEET-S-TTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred             Cceeccc-hhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecC-C
Confidence            7899998 69999999883 333579999999999999999999999 899999999999876554334899999833 2


Q ss_pred             ChhhHHHHHHHHHhhcccCeEEEEEcc---cccccccCCCCccccCCcEEEE--EEcCCCcceeeeEEEecCC
Q 041205          215 NEEEKAKILGHIRKYMKEGGVLLVRSA---KGARAFLYPVVEHELFDFKVLS--IFHPTNDVINSVVLLQLPK  282 (535)
Q Consensus       215 m~edK~~VL~eL~rvLKPGGvLVvRsa---~GlR~fLYP~Vdpdl~GFeil~--v~hP~~eVINSVVvARK~~  282 (535)
                       -.--.++|+.....++....|++-.-   .-+|.+++-      .||.+..  .+.-.+ -+-.++.+.++.
T Consensus        77 -G~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~------~gf~I~~E~lv~e~~-~~YeIi~~~~~~  141 (205)
T PF04816_consen   77 -GELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE------NGFEIIDEDLVEENG-RFYEIIVAERGE  141 (205)
T ss_dssp             -HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH------TTEEEEEEEEEEETT-EEEEEEEEEESS
T ss_pred             -HHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH------CCCEEEEeEEEeECC-EEEEEEEEEeCC
Confidence             35567777777776665555555322   113333333      5998875  223333 334577777653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.05  E-value=1.4e-05  Score=80.68  Aligned_cols=120  Identities=20%  Similarity=0.272  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          115 LAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       115 LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      ....|+..+..... ..+.+|||||||. |-|..=+.+ ..++  -.|.+.|.+|.|+++-++....+.   .++.--+.
T Consensus        56 wL~~Efpel~~~~~-~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~  129 (264)
T KOG2361|consen   56 WLLREFPELLPVDE-KSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVW  129 (264)
T ss_pred             HHHHhhHHhhCccc-cChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccce
Confidence            34456665554333 3444899999995 666665555 3444  889999999999999888765543   34433334


Q ss_pred             cccc--c--ccCCCCcce---EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          193 DIME--V--KEKLGEYDC---IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       193 DA~e--l--~~dL~~FDv---VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |...  +  +...+.+|.   ||+-+.++. +.-..++.++.+++||||.|++|++
T Consensus       130 Dlt~~~~~~~~~~~svD~it~IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  130 DLTSPSLKEPPEEGSVDIITLIFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             eccchhccCCCCcCccceEEEEEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence            4331  1  112245675   444445542 4456899999999999999999984

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=4.4e-05  Score=82.34  Aligned_cols=107  Identities=18%  Similarity=0.272  Sum_probs=83.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +......+...++++|+|.=|| .|.-++.+|+   ...+|+|+|+++++++.|+++++..| + ++++|+.+|+.++..
T Consensus       282 ~~~a~~~~~~~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~-i-~N~~f~~~~ae~~~~  355 (432)
T COG2265         282 YETALEWLELAGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANG-I-DNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHhhcCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHHhh
Confidence            4444445555788999999999 6788899997   67899999999999999999999999 5 459999999998877


Q ss_pred             CCC---CcceEEecccc-CChhhHHHHHHHHHhhcccCeEE
Q 041205          200 KLG---EYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       200 dL~---~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvL  236 (535)
                      ...   .||.|++|--= |+   -..+++.+.+ ++|-.++
T Consensus       356 ~~~~~~~~d~VvvDPPR~G~---~~~~lk~l~~-~~p~~Iv  392 (432)
T COG2265         356 AWWEGYKPDVVVVDPPRAGA---DREVLKQLAK-LKPKRIV  392 (432)
T ss_pred             hccccCCCCEEEECCCCCCC---CHHHHHHHHh-cCCCcEE
Confidence            653   58999999332 42   3467777776 4554433

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=5.4e-05  Score=79.40  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=87.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--C-
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--G-  202 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~-  202 (535)
                      ++...++.+|||.=++|+|=|+.+.+--.-+|..|+++|+|+..+..-+.+++++| + .++..++.|+...+...  . 
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~-~nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-V-RNVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CceEEEecccccccccccccC
Confidence            44668999999999999999986654411235778999999999999999999999 5 45888888886554332  2 


Q ss_pred             CcceEEecccc---CCh---hh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALA---GNE---EE----------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALV---gm~---ed----------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||.|++|+-=   |+.   ++                =.++|.+..+.+||||+|++.+
T Consensus       229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            39999998642   321   11                2468899999999999999976

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.03  E-value=3.1e-05  Score=77.05  Aligned_cols=93  Identities=14%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHh--hcCCcCCCeEEEEccccccccCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL-ARRIVS--SDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel-AR~li~--~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+++||||||||+++|- +++++  ...+|++||+++.++.. .++..+  ..+ . .+++  .-+..+...++..||+
T Consensus        74 ~~~~~vlDiG~gtG~~t~-~l~~~--ga~~v~avD~~~~~l~~~l~~~~~v~~~~-~-~ni~--~~~~~~~~~d~~~~Dv  146 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTD-CALQK--GAKEVYGVDVGYNQLAEKLRQDERVKVLE-R-TNIR--YVTPADIFPDFATFDV  146 (228)
T ss_pred             CCCCEEEEcccCCCHHHH-HHHHc--CCCEEEEEeCCHHHHHHHHhcCCCeeEee-c-CCcc--cCCHhHcCCCceeeeE
Confidence            467899999999977774 56662  34689999999987765 222111  112 1 2333  2223333334456898


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +|++ +.       .++..+.+.|+| |.+++
T Consensus       147 sfiS-~~-------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       147 SFIS-LI-------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             EEee-hH-------hHHHHHHHHhCc-CeEEE
Confidence            8885 32       268899999999 65544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.02  E-value=5.4e-05  Score=77.17  Aligned_cols=136  Identities=18%  Similarity=0.267  Sum_probs=94.0

Q ss_pred             ccchhhHHhHHHHHHHHHHhhCCC--CCCEEEEEccCCC--hhhHHHHHhhcCC-----CcEEEEEeCChhHHHHHHHHH
Q 041205          107 PYYENYVKLAKLEYGALIENTGVA--QLKKVAFVGSGPM--PLTSIILASQHMK-----STHFDNIDIDETANNLARRIV  177 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~~l~--~pkRVLeIGSGpl--PlTAI~LAk~~l~-----Ga~VtGIDIDpeAIelAR~li  177 (535)
                      .+|.+....-..+...+.......  .+-||.-+||+++  |||.-++...+.+     ..+|++.|||..+++.|+.-+
T Consensus        70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~  149 (268)
T COG1352          70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI  149 (268)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence            445554444444444433222111  4789999999876  6775555554553     589999999999999997531


Q ss_pred             -------------------hhcCC--------cCCCeEEEEccccccccCCCCcceEEeccccC-C-hhhHHHHHHHHHh
Q 041205          178 -------------------SSDDE--------IEKRMKFLTCDIMEVKEKLGEYDCIILAALAG-N-EEEKAKILGHIRK  228 (535)
Q Consensus       178 -------------------~~lG~--------Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVg-m-~edK~~VL~eL~r  228 (535)
                                         .+.++        +.+.|.|...|..+-....+.||+||+-..+- + .+.+.+++...+.
T Consensus       150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~  229 (268)
T COG1352         150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFAD  229 (268)
T ss_pred             CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHH
Confidence                               11110        12468888888865433446799999987764 3 8999999999999


Q ss_pred             hcccCeEEEEEccc
Q 041205          229 YMKEGGVLLVRSAK  242 (535)
Q Consensus       229 vLKPGGvLVvRsa~  242 (535)
                      .|+|||+|++-...
T Consensus       230 ~L~~gG~LflG~sE  243 (268)
T COG1352         230 SLKPGGLLFLGHSE  243 (268)
T ss_pred             HhCCCCEEEEccCc
Confidence            99999999996543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.02  E-value=0.0001  Score=77.74  Aligned_cols=157  Identities=18%  Similarity=0.187  Sum_probs=107.5

Q ss_pred             ccchhhHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC
Q 041205          107 PYYENYVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK  185 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~  185 (535)
                      ||+..  -.+..+++.....+ .+.+|+.|||==||++|+  +.=|.  +-|++++|.|+|..|++-|+.+++..| + .
T Consensus       174 Pf~~p--~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgi--LiEag--l~G~~viG~Did~~mv~gak~Nl~~y~-i-~  245 (347)
T COG1041         174 PFFRP--GSMDPRLARAMVNLARVKRGELVLDPFCGTGGI--LIEAG--LMGARVIGSDIDERMVRGAKINLEYYG-I-E  245 (347)
T ss_pred             CccCc--CCcCHHHHHHHHHHhccccCCEeecCcCCccHH--HHhhh--hcCceEeecchHHHHHhhhhhhhhhhC-c-C
Confidence            55433  23344544444433 578899999877775432  22233  579999999999999999999999998 4 4


Q ss_pred             CeEEEEc-cccccccCCCCcceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-
Q 041205          186 RMKFLTC-DIMEVKEKLGEYDCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-  254 (535)
Q Consensus       186 rI~Fi~G-DA~el~~dL~~FDvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-  254 (535)
                      ...+..+ ||.+++.+.+.||.|..|--.|-         .+-+.++|+...++|++||.+++-.+       +.+.+. 
T Consensus       246 ~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~  318 (347)
T COG1041         246 DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHEL  318 (347)
T ss_pred             ceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhH
Confidence            5666666 99998865555999999865542         23488999999999999999988554       111222 


Q ss_pred             ccCCcEEEE----EEcCCCcceeeeEEEec
Q 041205          255 ELFDFKVLS----IFHPTNDVINSVVLLQL  280 (535)
Q Consensus       255 dl~GFeil~----v~hP~~eVINSVVvARK  280 (535)
                      ...||++..    +.|-  .....+.++|+
T Consensus       319 ~~~~f~v~~~~~~~~H~--sLtR~i~v~~~  346 (347)
T COG1041         319 EELGFKVLGRFTMRVHG--SLTRVIYVVRK  346 (347)
T ss_pred             hhcCceEEEEEEEeecC--ceEEEEEEEec
Confidence            336888764    3332  24455666654

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.01  E-value=4.2e-05  Score=80.42  Aligned_cols=112  Identities=24%  Similarity=0.276  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      .|...+....  ..|.+|+|.=+|-+|+ +|-+|+   .|. .|+++|++|.+++..+++++.-+ +.++|..++||+.+
T Consensus       177 ~ER~Rva~~v--~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~re  249 (341)
T COG2520         177 TERARVAELV--KEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDARE  249 (341)
T ss_pred             HHHHHHHhhh--cCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHH
Confidence            6766666544  4599999998884444 477788   333 39999999999999999999988 78889999999999


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +......||.|++-...    .-..++....+.+++||++.+..
T Consensus       250 v~~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         250 VAPELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             hhhccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEe
Confidence            98887889999995333    45778899999999999998866

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.96  E-value=4.3e-05  Score=80.94  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfia  210 (535)
                      -+|||..||+ |.=+|.++.+ .+| .+|+++|+|+++++..+++++..+ + .++.++++|+..+.... ..||+|++|
T Consensus        46 ~~vLD~faGs-G~rgir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSAS-GIRAIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCch-hHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            4899999996 5666777663 234 589999999999999999999888 4 47899999998776543 359999999


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      - .|   ....+++.+.+.+++||+|.+-..
T Consensus       122 P-fG---s~~~fld~al~~~~~~glL~vTaT  148 (374)
T TIGR00308       122 P-FG---TPAPFVDSAIQASAERGLLLVTAT  148 (374)
T ss_pred             C-CC---CcHHHHHHHHHhcccCCEEEEEec
Confidence            7 55   346799999999999999998754

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.85  E-value=8.6e-05  Score=81.23  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=85.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~FDvV  207 (535)
                      ....-+|||||| .|-..+-+|+ ..|+..|+|||+....+..|.+.+.+.| + .++.++++|+..+..  ..+.+|-|
T Consensus       346 ~~~p~~lEIG~G-~G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l-~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFG-MGEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQN-I-TNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCC-chHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcC-C-CeEEEEcCCHHHHHHhcCcccccEE
Confidence            457899999999 4666678888 4789999999999999999999998888 5 689999998754433  23459999


Q ss_pred             EeccccCC-h--hhH-----HHHHHHHHhhcccCeEEEEEccc
Q 041205          208 ILAALAGN-E--EEK-----AKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       208 fiaALVgm-~--edK-----~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      |+..--.+ +  ..|     ..+++.+++.|+|||.|-+.+-+
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            98654433 1  112     46888999999999999998853

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=4e-05  Score=72.93  Aligned_cols=79  Identities=25%  Similarity=0.372  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+++|+++||| .|+-++-.+  ++....|+|+||||+++++.++++...-   -++.+.++|+.++....+-||.+++
T Consensus        47 iEgkkl~DLgcg-cGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfE---vqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   47 IEGKKLKDLGCG-CGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFE---VQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             ccCcchhhhcCc-hhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhh---hhhheeeeeccchhccCCeEeeEEe
Confidence            468999999999 466554443  3566789999999999999999999976   3789999999887766667999998


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      .--.|
T Consensus       121 NppFG  125 (185)
T KOG3420|consen  121 NPPFG  125 (185)
T ss_pred             cCCCC
Confidence            76655

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.81  E-value=0.00013  Score=74.12  Aligned_cols=134  Identities=17%  Similarity=0.345  Sum_probs=80.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--------------------------c
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--------------------------I  183 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--------------------------L  183 (535)
                      .++.+++||||||.-+.++.+++ +.  -+|+..|..+.-.+.-++=++..|.                          +
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~-~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACE-WF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGG-TE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHH-hh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            56889999999998888777766 23  5799999998877644443333221                          0


Q ss_pred             CCCe-EEEEcccccccc--C---CC-CcceEEeccccC----ChhhHHHHHHHHHhhcccCeEEEEEccccc-----ccc
Q 041205          184 EKRM-KFLTCDIMEVKE--K---LG-EYDCIILAALAG----NEEEKAKILGHIRKYMKEGGVLLVRSAKGA-----RAF  247 (535)
Q Consensus       184 s~rI-~Fi~GDA~el~~--d---L~-~FDvVfiaALVg----m~edK~~VL~eL~rvLKPGGvLVvRsa~Gl-----R~f  247 (535)
                      ...| .++.+|+...+.  +   +. .||+|+...-+.    ..+.+.+.++++.+.|||||.|++-..-+.     ..-
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~  211 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH  211 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence            0113 367788865321  1   22 399988653331    268999999999999999999999664221     111


Q ss_pred             cCCCC--ccc-------cCCcEEEEEEc
Q 041205          248 LYPVV--EHE-------LFDFKVLSIFH  266 (535)
Q Consensus       248 LYP~V--dpd-------l~GFeil~v~h  266 (535)
                      -||.+  +.+       -.||.+....+
T Consensus       212 ~F~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  212 KFPCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence            23332  221       28999987666

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.79  E-value=3.7e-05  Score=71.63  Aligned_cols=99  Identities=17%  Similarity=0.262  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------cC----
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------EK----  200 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~d----  200 (535)
                      .+.+|||+||+|+|+|...+-+ ..+.++|+|||+.+.           .. + ..+.++++|..+..      ..    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~-~-~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP-L-QNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc-c-cceeeeecccchhhHHHhhhhhcccc
Confidence            5699999999999999887733 225699999999987           11 1 45667777765421      11    


Q ss_pred             CCCcceEEecccc---CC--------hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          201 LGEYDCIILAALA---GN--------EEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       201 L~~FDvVfiaALV---gm--------~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ...||+|+.|...   |.        ..--...+.-+.+.|+|||.+++.-.++
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            1469999998722   11        1222334445567799999999876543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.78  E-value=1.4e-05  Score=80.13  Aligned_cols=104  Identities=21%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC----Ccce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG----EYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~----~FDv  206 (535)
                      ....|++.-||-+| -++.+|.   .++.|++||+||.-+..||.+++-.| +.+||+|++||..++-..+.    -+|+
T Consensus        94 ~~~~iidaf~g~gG-ntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGG-NTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcCCc-hHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence            67889988888444 4466655   57899999999999999999999999 88999999999987654331    2678


Q ss_pred             EEeccccCChhhHH-HHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKA-KILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~-~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||.+---|- +.|. .-+-.+..++.|.|.-++|.
T Consensus       169 vf~sppwgg-p~y~~~~~~DL~~~~~p~~~~~fk~  202 (263)
T KOG2730|consen  169 VFLSPPWGG-PSYLRADVYDLETHLKPMGTKIFKS  202 (263)
T ss_pred             eecCCCCCC-cchhhhhhhhhhhhcchhHHHHHHh
Confidence            888754432 2222 12333455555555444443

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.78  E-value=5.7e-05  Score=80.38  Aligned_cols=120  Identities=16%  Similarity=0.197  Sum_probs=85.4

Q ss_pred             HHHHHHhhCCCCCCEEEE--EccCCChhhHHHHHhhcCCC----------------------------c-------EEEE
Q 041205          120 YGALIENTGVAQLKKVAF--VGSGPMPLTSIILASQHMKS----------------------------T-------HFDN  162 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLe--IGSGplPlTAI~LAk~~l~G----------------------------a-------~VtG  162 (535)
                      ...+....+-.++..++|  -|||++++=|-+|+....||                            +       .++|
T Consensus       180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            344444444455566665  57777777777777532332                            1       3789


Q ss_pred             EeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC-hhh-------HHHHHHHHHhhcccCe
Q 041205          163 IDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-EEE-------KAKILGHIRKYMKEGG  234 (535)
Q Consensus       163 IDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~ed-------K~~VL~eL~rvLKPGG  234 (535)
                      +|+|+.+++.|+.+++.+| +++.|+|.++|+.++..+...||+|+..--.|. ..+       |..+...+.+.++-.+
T Consensus       260 ~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws  338 (381)
T COG0116         260 SDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS  338 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999 899999999999988877678999998766654 222       3344445556666666


Q ss_pred             EEEEEc
Q 041205          235 VLLVRS  240 (535)
Q Consensus       235 vLVvRs  240 (535)
                      +.|+-+
T Consensus       339 ~~v~tt  344 (381)
T COG0116         339 RYVFTT  344 (381)
T ss_pred             eEEEEc
Confidence            666655

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.76  E-value=6.3e-05  Score=74.22  Aligned_cols=106  Identities=20%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc--C-CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----cCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH--M-KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-----EKL  201 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~--l-~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-----~dL  201 (535)
                      .+|+.|+|+|+ .-|.|++++|.-.  + +.++|+|||||-.....  ..++... +..+|+|++||..+..     ...
T Consensus        31 ~kPd~IIE~Gi-~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   31 LKPDLIIETGI-AHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             H--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred             hCCCeEEEEec-CCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence            47999999999 5789999998622  2 67999999997654332  2234445 6689999999986422     112


Q ss_pred             ---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 ---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ....+|+.|+...+ +.-.+.|+.+...++||+++|+-+
T Consensus       107 ~~~~~~vlVilDs~H~~-~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  107 ASPPHPVLVILDSSHTH-EHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             ----SSEEEEESS-----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             hccCCceEEEECCCccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence               34568999887532 566778888999999999999966

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.75  E-value=0.00019  Score=73.05  Aligned_cols=135  Identities=17%  Similarity=0.195  Sum_probs=97.2

Q ss_pred             cccCccchhhHHhHHHHHHHHHH-hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          103 LNRFPYYENYVKLAKLEYGALIE-NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       103 L~~FpYy~NYv~LirlE~~lL~~-~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      +...+.|.+-.=.++.+-..+.. .+...++++|||.-+||+|=|. .+|..+...+.|++.|+++..+..-+..++++|
T Consensus        56 i~~l~~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g  134 (283)
T PF01189_consen   56 ICSLPEFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKRLG  134 (283)
T ss_dssp             GGGSHHHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             hhhchhhhCCcEEecccccccccccccccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHhcC
Confidence            33444444433344555444433 3455889999999999999887 455534447899999999999999999999999


Q ss_pred             CcCCCeEEEEcccccccc-CCC-CcceEEecccc---CC---hh----------------hHHHHHHHHHhhc----ccC
Q 041205          182 EIEKRMKFLTCDIMEVKE-KLG-EYDCIILAALA---GN---EE----------------EKAKILGHIRKYM----KEG  233 (535)
Q Consensus       182 ~Ls~rI~Fi~GDA~el~~-dL~-~FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvL----KPG  233 (535)
                       + .++...+.|+..... ... .||.|++|+-=   |.   .+                --.++|++..+.+    +||
T Consensus       135 -~-~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~g  212 (283)
T PF01189_consen  135 -V-FNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPG  212 (283)
T ss_dssp             ---SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEE
T ss_pred             -C-ceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCC
Confidence             4 678888899886532 223 49999998542   21   11                1246889999999    999


Q ss_pred             eEEEEEc
Q 041205          234 GVLLVRS  240 (535)
Q Consensus       234 GvLVvRs  240 (535)
                      |++++-+
T Consensus       213 G~lvYsT  219 (283)
T PF01189_consen  213 GRLVYST  219 (283)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEe
Confidence            9999966

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.75  E-value=1.7e-05  Score=79.97  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=73.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV  207 (535)
                      .+=+++||+|||+ |++..-+-.   --.+++|||||+.|+++|.+.    |++ +  ++.++|+..+..+.  ..||+|
T Consensus       124 g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK----g~Y-D--~L~~Aea~~Fl~~~~~er~DLi  192 (287)
T COG4976         124 GPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK----GLY-D--TLYVAEAVLFLEDLTQERFDLI  192 (287)
T ss_pred             CccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc----cch-H--HHHHHHHHHHhhhccCCcccch
Confidence            3468999999995 899887744   236899999999999999864    212 1  23345554444322  459999


Q ss_pred             EeccccCC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..+ .|-+ .-.-+.++.-+...|+|||.+++...
T Consensus       193 ~Aa-DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE  226 (287)
T COG4976         193 VAA-DVLPYLGALEGLFAGAAGLLAPGGLFAFSVE  226 (287)
T ss_pred             hhh-hHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence            864 4433 56788999999999999999999763

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.74  E-value=0.00016  Score=81.94  Aligned_cols=83  Identities=19%  Similarity=0.253  Sum_probs=62.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEeccccCC-h---hhHHHHHHHHHhhcc
Q 041205          158 THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALAGN-E---EEKAKILGHIRKYMK  231 (535)
Q Consensus       158 a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm-~---edK~~VL~eL~rvLK  231 (535)
                      .+|+|+|+|+++++.|++++...| +.++|.|.++|+.++....  +.||+|+..--.|. .   .+-..++..+.+.++
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            379999999999999999999999 7889999999998876543  35999998755543 2   233345555545444


Q ss_pred             ---cCeEEEEEcc
Q 041205          232 ---EGGVLLVRSA  241 (535)
Q Consensus       232 ---PGGvLVvRsa  241 (535)
                         ||+.+.+-++
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence               8887766654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.72  E-value=0.00025  Score=74.99  Aligned_cols=125  Identities=23%  Similarity=0.348  Sum_probs=88.7

Q ss_pred             ccchhhHHhHHHH------------HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 041205          107 PYYENYVKLAKLE------------YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR  174 (535)
Q Consensus       107 pYy~NYv~LirlE------------~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR  174 (535)
                      -||..|..|.+..            ..++...-..-.++-|+|||||. |+-+++-|+  ....+|.+|+-+ +|.+.||
T Consensus       141 ~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGS-GILS~FAaq--AGA~~vYAvEAS-~MAqyA~  216 (517)
T KOG1500|consen  141 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGS-GILSFFAAQ--AGAKKVYAVEAS-EMAQYAR  216 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCc-cHHHHHHHH--hCcceEEEEehh-HHHHHHH
Confidence            5777777776522            12222212224689999999995 777777777  244689999987 6789999


Q ss_pred             HHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEE
Q 041205          175 RIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       175 ~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ++++... +.+||+++.|-+.++..+ ...|+++..-.=-|  .+..-+-+-+.++.|+|.|.+.
T Consensus       217 ~Lv~~N~-~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  217 KLVASNN-LADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             HHHhcCC-ccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            9999887 899999999999875433 46899987633223  3444555567789999999763

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.71  E-value=0.00012  Score=72.86  Aligned_cols=105  Identities=19%  Similarity=0.304  Sum_probs=75.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ...+.||.|+|-+=.|--+|.+ ++  -+|+-||..+..++.|++.+...+  ....++.+.-..++.+..+.||+||+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~-~f--~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP-VF--DEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC-C---SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHH-hc--CEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence            4689999999966566556655 33  689999999999999998776632  234577777777766555679999998


Q ss_pred             cccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -.++ + -++-.++|..+...|+|||+|++..
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            6664 4 7899999999999999999999977

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.70  E-value=0.00057  Score=66.71  Aligned_cols=125  Identities=17%  Similarity=0.200  Sum_probs=89.8

Q ss_pred             hhHHhHHHHHHHHHHhhCC--CCCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205          111 NYVKLAKLEYGALIENTGV--AQLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR  186 (535)
Q Consensus       111 NYv~LirlE~~lL~~~~~l--~~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r  186 (535)
                      .+.+.+..=.+.+...+.-  -.+.++||+  |||++|+=|  +.+   ....++-||.|.+++...+++++.+| +..+
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEA--lSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~   94 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEA--LSR---GAARVVFVEKDRKAVKILKENLKALG-LEGE   94 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHH--HhC---CCceEEEEecCHHHHHHHHHHHHHhC-Cccc
Confidence            4555665555555554432  578999987  666555554  334   34689999999999999999999999 7889


Q ss_pred             eEEEEccccccccCC-C--CcceEEeccccCC-hhhHHHHHHH--HHhhcccCeEEEEEcc
Q 041205          187 MKFLTCDIMEVKEKL-G--EYDCIILAALAGN-EEEKAKILGH--IRKYMKEGGVLLVRSA  241 (535)
Q Consensus       187 I~Fi~GDA~el~~dL-~--~FDvVfiaALVgm-~edK~~VL~e--L~rvLKPGGvLVvRsa  241 (535)
                      .+++.+|+...+... .  .||+||+|--.+. .-++...+..  -...|+|||.+++...
T Consensus        95 ~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742          95 ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            999999998654433 2  3999999955532 2344444444  4567999999999765

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.69  E-value=0.00019  Score=73.40  Aligned_cols=107  Identities=17%  Similarity=0.330  Sum_probs=66.4

Q ss_pred             CCCEEEEEccCCChhhHHH--HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---------
Q 041205          131 QLKKVAFVGSGPMPLTSII--LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---------  199 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~--LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---------  199 (535)
                      .=++.|||||| +|...-.  +|++..|+++|+-||+||-++..||.++....  ..+..++++|+.+...         
T Consensus        68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCCHHHHhcCHHHHh
Confidence            45899999999 8865443  35555799999999999999999999987654  1358999999976321         


Q ss_pred             --CCCCcceEEeccccCC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 --KLGEYDCIILAALAGN---EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 --dL~~FDvVfiaALVgm---~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        +++.-=.|++.+.+|+   .++...++..++..|.||..|++..
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence              2222113444444443   4689999999999999999999865

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.67  E-value=0.00049  Score=73.45  Aligned_cols=148  Identities=14%  Similarity=0.191  Sum_probs=102.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHH--HHHhhcC--C-cCCCeEEEEccccccccCCC-
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLAR--RIVSSDD--E-IEKRMKFLTCDIMEVKEKLG-  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR--~li~~lG--~-Ls~rI~Fi~GDA~el~~dL~-  202 (535)
                      +...+||-+|.| =|+.+.-+-+  +| -.+|+-||.||+|++.|+  ...++..  . .+.|++++..|+..+...-+ 
T Consensus       288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            567899999999 5999998877  67 578999999999999999  4455432  1 24699999999998876554 


Q ss_pred             CcceEEeccccC----C-hhhHHHHHHHHHhhcccCeEEEEEccccccc-ccCCCCcc--ccCCcEEEE-EEc-CCCcce
Q 041205          203 EYDCIILAALAG----N-EEEKAKILGHIRKYMKEGGVLLVRSAKGARA-FLYPVVEH--ELFDFKVLS-IFH-PTNDVI  272 (535)
Q Consensus       203 ~FDvVfiaALVg----m-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~-fLYP~Vdp--dl~GFeil~-v~h-P~~eVI  272 (535)
                      .||+|++|---.    + .---.+++.-+.++++++|++++......-. --|..++.  .-+||.+.- ..| |+=.-.
T Consensus       365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeW  444 (508)
T COG4262         365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEW  444 (508)
T ss_pred             cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccccc
Confidence            499999983321    2 2234678889999999999999976543110 11111222  237887642 333 653222


Q ss_pred             eeeEEEecC
Q 041205          273 NSVVLLQLP  281 (535)
Q Consensus       273 NSVVvARK~  281 (535)
                       .++++++.
T Consensus       445 -Gf~l~~~~  452 (508)
T COG4262         445 -GFILAAPG  452 (508)
T ss_pred             -ceeecccc
Confidence             27888875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.62  E-value=0.00025  Score=78.11  Aligned_cols=102  Identities=24%  Similarity=0.259  Sum_probs=73.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------ccc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------MEV  197 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------~el  197 (535)
                      ..++++|+-+|+|++|+.++..|+.  -|+.|+.+|.+++..+.++++    |.     +|+.-|.           .+.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aesl----GA-----~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESM----GA-----EFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc----CC-----eEEEeccccccccccchhhhc
Confidence            4689999999999999999999994  578999999999999888864    51     1211111           011


Q ss_pred             cc------------CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KE------------KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~------------dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..            ...++|+|+..+...-.+.+.-+.++..+.|||||+++.-..
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            11            124699999887762111233446999999999999887664

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.61  E-value=0.00023  Score=73.93  Aligned_cols=102  Identities=23%  Similarity=0.231  Sum_probs=73.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccc-cccCC--CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIME-VKEKL--GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~e-l~~dL--~~FD  205 (535)
                      .++.+|+-+|+||+|+-++.+|+ .+..++|+.+|++++.+++|++.....-     +..... ++.. .....  ..||
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~-----~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGADV-----VVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCCeE-----eecCccccHHHHHHHHhCCCCCC
Confidence            45559999999999999999998 4666899999999999999998643321     111111 2211 11111  2599


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +||-++..      ...+..+.+.++|||.+++-...+
T Consensus       241 ~vie~~G~------~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         241 VVIEAVGS------PPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             EEEECCCC------HHHHHHHHHHhcCCCEEEEEeccC
Confidence            99987554      448889999999999999876543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00029  Score=71.72  Aligned_cols=83  Identities=13%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+.....+.+++.|+|||+|.+.+|..++ +   .+.+|++||+|+..++.=++.+..    .++++++.||+..+..
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll-~---~~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~   90 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLL-E---RAARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDF   90 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHH-h---hcCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcc
Confidence            3344444556778999999999988887666 4   468899999999999888877663    2589999999976544


Q ss_pred             CCC-CcceEEec
Q 041205          200 KLG-EYDCIILA  210 (535)
Q Consensus       200 dL~-~FDvVfia  210 (535)
                      +.- .++.|+..
T Consensus        91 ~~l~~~~~vVaN  102 (259)
T COG0030          91 PSLAQPYKVVAN  102 (259)
T ss_pred             hhhcCCCEEEEc
Confidence            311 56777754

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.57  E-value=0.00047  Score=72.53  Aligned_cols=109  Identities=20%  Similarity=0.168  Sum_probs=77.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----CeEEEEcccccc-----ccC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----RMKFLTCDIMEV-----KEK  200 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----rI~Fi~GDA~el-----~~d  200 (535)
                      .+++.|+++|||-+|=- +-.-+  ..-..++||||.+..|+.|++..+..-...+    ...|++||....     ...
T Consensus       116 ~~~~~~~~LgCGKGGDL-lKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDL-LKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             ccccccceeccCCcccH-hHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            57899999999975544 44434  2347899999999999999998765321112    468999998632     112


Q ss_pred             CCC-cceEEeccccCC---h-hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 LGE-YDCIILAALAGN---E-EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L~~-FDvVfiaALVgm---~-edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+. ||+|=+....|.   . +.-...|.++.+.|+|||++|.--+
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            233 999986644442   3 4445568999999999999998665

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.52  E-value=0.00031  Score=72.81  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=50.3

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccc-cccCC----CCcc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIME-VKEKL----GEYD  205 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~e-l~~dL----~~FD  205 (535)
                      .-++||||||+-.+=.|+-++.  .|++|+|.|||+.+++.|++++++- + |.++|+++...-.. +...+    ..||
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~d  179 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFD  179 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred             ceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceee
Confidence            5799999999977767777763  4999999999999999999999998 7 89999998664321 11111    2477


Q ss_pred             eEEec
Q 041205          206 CIILA  210 (535)
Q Consensus       206 vVfia  210 (535)
                      +.+..
T Consensus       180 ftmCN  184 (299)
T PF05971_consen  180 FTMCN  184 (299)
T ss_dssp             EEEE-
T ss_pred             EEecC
Confidence            77654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.52  E-value=0.00068  Score=68.70  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      -.|++|||+||||  .|++|.+....+ -.++++||.|+.++++|+.+++.... .....+. .+...-..+....|+|+
T Consensus        32 f~P~~vLD~GsGp--Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLvi  107 (274)
T PF09243_consen   32 FRPRSVLDFGSGP--GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLVI  107 (274)
T ss_pred             CCCceEEEecCCh--HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEEE
Confidence            4689999999996  377777765544 35799999999999999999887542 1222111 11111112233459999


Q ss_pred             eccccC-C-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAG-N-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVg-m-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++..+. + ...+..+++.++..+.+ -+|++-
T Consensus       108 ~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE  139 (274)
T PF09243_consen  108 ASYVLNELPSAARAELVRSLWNKTAP-VLVLVE  139 (274)
T ss_pred             EehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence            886663 3 56778888888887766 444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=97.48  E-value=0.0013  Score=65.67  Aligned_cols=109  Identities=19%  Similarity=0.179  Sum_probs=83.4

Q ss_pred             CCCCCCEEEEEccCCCh-hhHHHHHhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccccCCCCc
Q 041205          128 GVAQLKKVAFVGSGPMP-LTSIILASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKEKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplP-lTAI~LAk~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~dL~~F  204 (535)
                      .....+.|+++.|+..+ .|+|-||-. +.+|+++++|-.|++.....++.+..+| +.+-++|+.||. .++...+.+.
T Consensus        38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~i  116 (218)
T PF07279_consen   38 AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGI  116 (218)
T ss_pred             ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCC
Confidence            34678999999775323 245555432 3689999999999999999999999989 777889999985 4577788899


Q ss_pred             ceEEeccccCChhhHH-HHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKA-KILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~-~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++++|+-.   ++.. ++|+.+ +.=+.|++|+.+|+
T Consensus       117 DF~vVDc~~---~d~~~~vl~~~-~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  117 DFVVVDCKR---EDFAARVLRAA-KLSPRGAVVVCYNA  150 (218)
T ss_pred             CEEEEeCCc---hhHHHHHHHHh-ccCCCceEEEEecc
Confidence            999999876   6777 777754 43456777777775

The function of this family is unknown.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.42  E-value=0.00085  Score=66.46  Aligned_cols=101  Identities=15%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ...+.+.|+|.|++++| ++-|+   ..-+|++|+.||...+.|.+++.--|+  .+++++.|||.+..+  ..-|+|++
T Consensus        31 va~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvic  102 (252)
T COG4076          31 VAEDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVIC  102 (252)
T ss_pred             HhhhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHH
Confidence            34589999999976555 44545   257899999999999999999988884  799999999986554  56799886


Q ss_pred             ccccC-C-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAG-N-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVg-m-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .-+-. + .+.-..+++.+.+.||-++.++=
T Consensus       103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            52221 2 46678899999999999998875

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.41  E-value=0.0019  Score=67.45  Aligned_cols=165  Identities=16%  Similarity=0.195  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHhh-----CCCCCCEEEEEccCCChhhHHHHHhhc--CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          115 LAKLEYGALIENT-----GVAQLKKVAFVGSGPMPLTSIILASQH--MKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       115 LirlE~~lL~~~~-----~l~~pkRVLeIGSGplPlTAI~LAk~~--l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      .++.|...|..+.     .+.++..|+|+|||.+-=|.++|..-.  ....+.++||||.++++.+.+.+.... + ..+
T Consensus        55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l  132 (319)
T TIGR03439        55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV  132 (319)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence            4567766666544     245777999999998777777775411  135789999999999999999887222 2 235


Q ss_pred             EE--EEcccccccc---C--C-CCcceEE-eccccCC--hhhHHHHHHHHHh-hcccCeEEEEEc---------------
Q 041205          188 KF--LTCDIMEVKE---K--L-GEYDCII-LAALAGN--EEEKAKILGHIRK-YMKEGGVLLVRS---------------  240 (535)
Q Consensus       188 ~F--i~GDA~el~~---d--L-~~FDvVf-iaALVgm--~edK~~VL~eL~r-vLKPGGvLVvRs---------------  240 (535)
                      ++  ++||-.+...   .  . ....+|| .-+.+|-  .++-..+|..+++ .|+||+.|++--               
T Consensus       133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d  212 (319)
T TIGR03439       133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND  212 (319)
T ss_pred             EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence            55  7887655322   1  1 2356666 4456764  7788899999999 999999888821               


Q ss_pred             cccc-ccccCCC-------C--c-cccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205          241 AKGA-RAFLYPV-------V--E-HELFDFKVLSIFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       241 a~Gl-R~fLYP~-------V--d-pdl~GFeil~v~hP~~eVINSVVvARK~  281 (535)
                      +.|. +.|+--.       .  + ++...|+-...++|...-+...+++++.
T Consensus       213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~  264 (319)
T TIGR03439       213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD  264 (319)
T ss_pred             CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence            1121 1111000       0  0 1235677777777776667778877764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK10742 putative methyltransferase; Provisional

Probab=97.40  E-value=0.00066  Score=68.88  Aligned_cols=89  Identities=11%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             HHHHHhhCCCCCC--EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc------CC-cCCCeEEEE
Q 041205          121 GALIENTGVAQLK--KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD------DE-IEKRMKFLT  191 (535)
Q Consensus       121 ~lL~~~~~l~~pk--RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l------G~-Ls~rI~Fi~  191 (535)
                      +.+.+.++++++.  +|||.=+| +|-=++.+|.   .|+.|+.||.++.+..+-+..++++      +. +..+|++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            5677777788888  99999999 6888888988   5899999999999999999998885      42 236899999


Q ss_pred             ccccccccCCC-CcceEEecccc
Q 041205          192 CDIMEVKEKLG-EYDCIILAALA  213 (535)
Q Consensus       192 GDA~el~~dL~-~FDvVfiaALV  213 (535)
                      +|+.+++.... .||+||+|-..
T Consensus       152 ~da~~~L~~~~~~fDVVYlDPMf  174 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYLDPMF  174 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEECCCC
Confidence            99988776543 59999999555

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.39  E-value=0.00059  Score=69.23  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....|..+.....+.||+|
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~vi~~~~~~~~~~~~~~g~~D~v  239 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MG-ADKLVNPQNDDLDHYKAEKGYFDVS  239 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cC-CcEEecCCcccHHHHhccCCCCCEE
Confidence            3578999999999999999999993  466 69999999999888775    45 2111111112222222222359999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |-....      ...+....+.|++||++++-.
T Consensus       240 id~~G~------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        240 FEVSGH------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             EECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            864322      346778888999999998754

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.39  E-value=0.0022  Score=64.21  Aligned_cols=138  Identities=20%  Similarity=0.237  Sum_probs=101.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|+||||- -+|=++.+-+. -+..++++.|+++..++.|.+++.+.+ +.++|+..+||+.......+.+|+|.+
T Consensus        15 ~~~~~iaDIGsD-HAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          15 KQGARIADIGSD-HAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             HcCCceeeccCc-hhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence            466779999997 57877777774 456789999999999999999999999 789999999999776655557999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-cc------CCcEEEE-EEcCCCcceeeeEEEecC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-EL------FDFKVLS-IFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-dl------~GFeil~-v~hP~~eVINSVVvARK~  281 (535)
                      +.+=|  .--.++|++-...++-=          -|.+|-|+..+ ++      .+|++.. ..-+.+.-+--++++.++
T Consensus        92 AGMGG--~lI~~ILee~~~~l~~~----------~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~  159 (226)
T COG2384          92 AGMGG--TLIREILEEGKEKLKGV----------ERLILQPNIHTYELREWLSANSYEIKAETILEEDGKIYEILVVEKS  159 (226)
T ss_pred             eCCcH--HHHHHHHHHhhhhhcCc----------ceEEECCCCCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEecC
Confidence            84433  44566777666665421          12356676655 22      6898865 444555555568888886


Q ss_pred             C
Q 041205          282 K  282 (535)
Q Consensus       282 ~  282 (535)
                      .
T Consensus       160 ~  160 (226)
T COG2384         160 S  160 (226)
T ss_pred             C
Confidence            4

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.39  E-value=0.00055  Score=60.68  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=50.5

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      .|+||||| .|+.++++++ ..++++|+++|.++++.+.++++++..| + .++++++..+.+
T Consensus         1 ~vlDiGa~-~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGAN-IGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCC-ccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence            38999999 5888899988 5677899999999999999999999888 5 469998887653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.0042  Score=61.55  Aligned_cols=135  Identities=19%  Similarity=0.188  Sum_probs=87.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------cCCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------EKLG  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~dL~  202 (535)
                      +.++++|+|+|+-|+|.|=+ .++...++..|++||+.|-.             .-.++.|+++|.++-.      ..++
T Consensus        43 ~~~~~~ViDLGAAPGgWsQv-a~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQV-AAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHH-HHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            47899999999999888754 44545566779999999743             1245899999987522      1223


Q ss_pred             --CcceEEecccc---CC--------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCccc-cCCcEEEEEEcCC
Q 041205          203 --EYDCIILAALA---GN--------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHE-LFDFKVLSIFHPT  268 (535)
Q Consensus       203 --~FDvVfiaALV---gm--------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpd-l~GFeil~v~hP~  268 (535)
                        .+|+|+.|..-   |.        ..-....++-...+|+|||.+++....|--.   ..+-.. ...|+.+....|.
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~---~~~l~~~~~~F~~v~~~KP~  185 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF---EDLLKALRRLFRKVKIFKPK  185 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH---HHHHHHHHHhhceeEEecCc
Confidence              37999966432   21        2334455566677999999999988766200   000001 2578888888886


Q ss_pred             Ccceee---eEEEec
Q 041205          269 NDVINS---VVLLQL  280 (535)
Q Consensus       269 ~eVINS---VVvARK  280 (535)
                      ...-+|   +++++.
T Consensus       186 aSR~~S~E~y~v~~~  200 (205)
T COG0293         186 ASRKRSREIYLVAKG  200 (205)
T ss_pred             cccCCCceEEEEEec
Confidence            644333   555554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.32  E-value=0.0022  Score=62.43  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=81.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----C
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----G  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~  202 (535)
                      ....+.-|||+|-|++.+|--.|++ ..+...++.||.|++.+..=.+..   .    .+.|++||+.++...+     .
T Consensus        45 ~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~~~---p----~~~ii~gda~~l~~~l~e~~gq  116 (194)
T COG3963          45 DPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQLY---P----GVNIINGDAFDLRTTLGEHKGQ  116 (194)
T ss_pred             CcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHHhC---C----CccccccchhhHHHHHhhcCCC
Confidence            3377889999999999999999977 467789999999999876554442   2    3568999998765222     2


Q ss_pred             CcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||.|+..--+ .. ..-..++++.+...+++||.++--++
T Consensus       117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            39999975333 22 46778999999999999999887554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.30  E-value=0.0036  Score=56.99  Aligned_cols=66  Identities=26%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc---CCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEEEccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH---MKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME  196 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~---l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi~GDA~e  196 (535)
                      .++.+|+|+||| -|+-+..+|..+   .++.+|+|||.++..++.|.+..++.+. +..++.|..++..+
T Consensus        24 ~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            678999999999 799999997711   3789999999999999999999998873 34678888887654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.25  E-value=0.0013  Score=69.68  Aligned_cols=88  Identities=14%  Similarity=0.269  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++++++||||+|+|+|-.++ +   .|++|++||..+    .+..+ ...    .+|++..+|+.......+.+|.|+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~-~---rG~~V~AVD~g~----l~~~L-~~~----~~V~h~~~d~fr~~p~~~~vDwvV  275 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLV-R---RGMFVTAVDNGP----MAQSL-MDT----GQVEHLRADGFKFRPPRKNVDWLV  275 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHH-H---cCCEEEEEechh----cCHhh-hCC----CCEEEEeccCcccCCCCCCCCEEE
Confidence            3689999999999999996544 5   478999999654    22222 222    479999999987654456799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccC
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEG  233 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPG  233 (535)
                      .| .+   +.+.++++-+.+.+..|
T Consensus       276 cD-mv---e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        276 CD-MV---EKPARVAELMAQWLVNG  296 (357)
T ss_pred             Ee-cc---cCHHHHHHHHHHHHhcC
Confidence            98 33   47789999999988777

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.22  E-value=0.00063  Score=75.08  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------cc--
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------ME--  196 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------~e--  196 (535)
                      .++.+|+-+|+|+.|+.++.+|+.  -|+.|+.+|.+++..+.++++    | .    +++.-|.           .+  
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~l----G-a----~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSM----G-A----EFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc----C-C----eEEeccccccccccccceeecC
Confidence            578999999999999999999994  578999999999988777753    4 1    1211111           00  


Q ss_pred             ----------cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          197 ----------VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       197 ----------l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                                +.....++|+||..+++.-.+.+.-+.++..+.||||++++=
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                      122245799999888773212223488889999999998763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.18  E-value=0.002  Score=65.96  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ...++||||.|-++.|. .||. ++  .+|++.|.|+.|.    ...++-|     ++++  |+.++......||+|-+-
T Consensus        94 ~~~~lLDlGAGdG~VT~-~l~~-~f--~~v~aTE~S~~Mr----~rL~~kg-----~~vl--~~~~w~~~~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTE-RLAP-LF--KEVYATEASPPMR----WRLSKKG-----FTVL--DIDDWQQTDFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHHH-HHHh-hc--ceEEeecCCHHHH----HHHHhCC-----CeEE--ehhhhhccCCceEEEeeh
Confidence            57899999999866665 5677 45  5699999999993    3344556     2333  333344333469999988


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++..--..+..+|+++++.|+|+|++++--
T Consensus       159 NvLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  159 NVLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             hhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            777324678999999999999999998843

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.17  E-value=0.002  Score=66.65  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      +.+..-..+.+++.|||||-||+-+|--+| +   .|.+|+++|+|+.+++.=.+.++-.. .+...+++.||...  .+
T Consensus        48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e---~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d  120 (315)
T KOG0820|consen   48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLL-E---AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TD  120 (315)
T ss_pred             HHHHhccCCCCCCEEEEeCCCCCHHHHHHH-H---hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CC
Confidence            333333467999999999999988887666 4   58999999999999998888887776 67899999999964  34


Q ss_pred             CCCcceEEe
Q 041205          201 LGEYDCIIL  209 (535)
Q Consensus       201 L~~FDvVfi  209 (535)
                      +..||.++.
T Consensus       121 ~P~fd~cVs  129 (315)
T KOG0820|consen  121 LPRFDGCVS  129 (315)
T ss_pred             Ccccceeec
Confidence            456898886

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.14  E-value=0.0038  Score=62.99  Aligned_cols=116  Identities=18%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV  207 (535)
                      +++.|||.||=| +|+..-.+.+ ..| .+=+-|+..|+...+-|.-.-.   -.++|-+..|--.++...+  +.||-|
T Consensus       100 tkggrvLnVGFG-MgIidT~iQe-~~p-~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFG-MGIIDTFIQE-APP-DEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccc-hHHHHHHHhh-cCC-cceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhhccccccCccee
Confidence            678999999999 8888877755 334 4445699999998776654222   1357888888766666544  459999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEccccccc-ccCCC
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARA-FLYPV  251 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~-fLYP~  251 (535)
                      |.+..-..-++-..+.+++.+.|||||++.+-+.-|... +.|-+
T Consensus       174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v  218 (271)
T KOG1709|consen  174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV  218 (271)
T ss_pred             EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence            998664334777888999999999999999988755443 55554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.13  E-value=0.0021  Score=69.38  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=75.4

Q ss_pred             chhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|-.-+-+.-+..+.+..+ ..++++|+-+|+|++|......++  ..|++|+.+|+|+...+.|+.    .| .    
T Consensus       178 ~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G-~----  246 (413)
T cd00401         178 FDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EG-Y----  246 (413)
T ss_pred             ccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cC-C----
Confidence            35544444444566666543 257999999999999999998888  368899999999998877764    46 2    


Q ss_pred             EEEEccccccccCCCCcceEEeccccCChhhHHHHHHH-HHhhcccCeEEEEEc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGH-IRKYMKEGGVLLVRS  240 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~e-L~rvLKPGGvLVvRs  240 (535)
                      +..  +..+   ....+|+||.+...      ..++.. ..+.|++||+++.-.
T Consensus       247 ~~~--~~~e---~v~~aDVVI~atG~------~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         247 EVM--TMEE---AVKEGDIFVTTTGN------KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             EEc--cHHH---HHcCCCEEEECCCC------HHHHHHHHHhcCCCCcEEEEeC
Confidence            111  1112   12468999975432      335554 488999999997753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.13  E-value=0.0033  Score=63.49  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhc------CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQH------MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-  200 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~------l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-  200 (535)
                      ...++.+|+|-.||++++-.-.+ ++.      .....++|+|+|+.++.+|+-++.-.|.-.....+.++|....... 
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~-~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~  121 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAM-EYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI  121 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHH-HHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred             hccccceeechhhhHHHHHHHHH-HhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence            44678899999999876654333 211      2678999999999999999977654452113356889998654433 


Q ss_pred             -CCCcceEEeccccCCh---------------------hhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          201 -LGEYDCIILAALAGNE---------------------EEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       201 -L~~FDvVfiaALVgm~---------------------edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                       ...||+|+..--.+..                     ..-..++.++.+.|++||++++--+.|
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence             2469999865333221                     011258899999999999876655543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.12  E-value=0.0015  Score=65.09  Aligned_cols=109  Identities=21%  Similarity=0.313  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+...|+|.|||-..     +|+....+-+|+..|.-..            .   +.  ++.+|...+|-+.+..|+|++
T Consensus        71 ~~~~viaD~GCGdA~-----la~~~~~~~~V~SfDLva~------------n---~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   71 PKSLVIADFGCGDAK-----LAKAVPNKHKVHSFDLVAP------------N---PR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             -TTS-EEEES-TT-H-----HHHH--S---EEEEESS-S------------S---TT--EEES-TTS-S--TT-EEEEEE
T ss_pred             CCCEEEEECCCchHH-----HHHhcccCceEEEeeccCC------------C---CC--EEEecCccCcCCCCceeEEEE
Confidence            456799999999632     3332223457999997531            2   23  567999999988888997664


Q ss_pred             -ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCC-C-cc-ccCCcEEEEE
Q 041205          210 -AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPV-V-EH-ELFDFKVLSI  264 (535)
Q Consensus       210 -aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~-V-dp-dl~GFeil~v  264 (535)
                       -++.|  .+...++.+..|+|||||.|.+-....  +|-.+. + .. ..-||+....
T Consensus       129 cLSLMG--Tn~~~fi~EA~RvLK~~G~L~IAEV~S--Rf~~~~~F~~~~~~~GF~~~~~  183 (219)
T PF05148_consen  129 CLSLMG--TNWPDFIREANRVLKPGGILKIAEVKS--RFENVKQFIKALKKLGFKLKSK  183 (219)
T ss_dssp             ES---S--S-HHHHHHHHHHHEEEEEEEEEEEEGG--G-S-HHHHHHHHHCTTEEEEEE
T ss_pred             EhhhhC--CCcHHHHHHHHheeccCcEEEEEEecc--cCcCHHHHHHHHHHCCCeEEec
Confidence             46667  799999999999999999999976532  232110 0 01 2369998653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0037  Score=61.58  Aligned_cols=106  Identities=14%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++-++|||||. |.-+-+|++...+++...++||+|.|.+..++-++.-+   -++..+++|....... +..|++.+
T Consensus        42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhcc-CCccEEEE
Confidence            4588999999996 55555666766788999999999999999998888777   3588899998765554 56777665


Q ss_pred             cc-ccCC--------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AA-LAGN--------------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aA-LVgm--------------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .- .|.-                    .+--.+++.++-..|.|.|++.+-.
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~  168 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA  168 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence            31 1100                    1223456666777788888776643

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.03  E-value=0.0042  Score=65.48  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=77.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-----ccccccc-CC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-----DIMEVKE-KL  201 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-----DA~el~~-dL  201 (535)
                      +++.+.+||-+|+||+|+-++..|+ .+.-.+|+.+|+++.+++.|++    +| . +.+.....     +..+... .+
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~G-a-~~~~~~~~~~~~~~~~~~v~~~~  238 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FG-A-TVTDPSSHKSSPQELAELVEKAL  238 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hC-C-eEEeeccccccHHHHHHHHHhhc
Confidence            4689999999999999999999999 4666799999999999999998    34 1 12222222     1111111 11


Q ss_pred             --CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc
Q 041205          202 --GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH  254 (535)
Q Consensus       202 --~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp  254 (535)
                        ..||++|--+..      ...++-....+++||.+++- .+|-...-+|..+.
T Consensus       239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlv-g~g~~~~~fpi~~v  286 (354)
T KOG0024|consen  239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLV-GMGAEEIQFPIIDV  286 (354)
T ss_pred             cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEe-ccCCCccccChhhh
Confidence              239999976665      33455557789999996664 34544566776554

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.99  E-value=0.0028  Score=64.69  Aligned_cols=96  Identities=14%  Similarity=0.181  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++++||-+|+|++|+.++.+|+++..+++|+++|.+++..+.|++    +| ..    +.. +  +.... ..||+||
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-~~----~~~-~--~~~~~-~g~d~vi  227 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-ET----YLI-D--DIPED-LAVDHAF  227 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-ce----eeh-h--hhhhc-cCCcEEE
Confidence            46789999999999999999888843456789999999999888864    34 11    110 1  11111 2489998


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      =...-   ..-...+....+.|++||++++-.
T Consensus       228 D~~G~---~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         228 ECVGG---RGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ECCCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence            54321   113457888889999999998753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.94  E-value=0.0051  Score=61.57  Aligned_cols=110  Identities=16%  Similarity=0.265  Sum_probs=70.9

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++..|+|||.|+|-+|.-++ +   .+.+|++||+|+..++.-++.+..    ..+++++.+|+.++...
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~-~---~~~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELL-K---RGKRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHH-H---HSSEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGG
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHh-c---ccCcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccH
Confidence            334444555789999999999887777665 4   238999999999998888877662    25899999999865443


Q ss_pred             C--CCcceEEeccccCChhhHHHHHHHHHhhcccC---eEEEEEc
Q 041205          201 L--GEYDCIILAALAGNEEEKAKILGHIRKYMKEG---GVLLVRS  240 (535)
Q Consensus       201 L--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG---GvLVvRs  240 (535)
                      .  ..-.+.+++++- . .--..++.++...-+.|   .++++-.
T Consensus        92 ~~~~~~~~~vv~NlP-y-~is~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLP-Y-NISSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             GHCSSSEEEEEEEET-G-TGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             HhhcCCceEEEEEec-c-cchHHHHHHHhhcccccccceEEEEeh
Confidence            2  112234444332 1 12345777776644443   4555544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.91  E-value=0.0028  Score=62.91  Aligned_cols=104  Identities=19%  Similarity=0.267  Sum_probs=76.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.++||||.|+|+ |+.+|.-|+  .....|+..|++|-..+..+-+++..|   -.|.|...|..-   +...||+|+.
T Consensus        78 VrgkrVLd~gags-gLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g---~~~~~Dl~La  148 (218)
T COG3897          78 VRGKRVLDLGAGS-GLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG---SPPAFDLLLA  148 (218)
T ss_pred             cccceeeeccccc-ChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC---CCcceeEEEe
Confidence            5689999999996 899998888  244679999999999999999998888   379999988742   4457999997


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      .-++=-...-.+++.-..+....|..+++-+++
T Consensus       149 gDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~  181 (218)
T COG3897         149 GDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG  181 (218)
T ss_pred             eceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            644411344556666444444556677776653

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.90  E-value=0.0042  Score=64.72  Aligned_cols=80  Identities=16%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-----CCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-----LGE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-----L~~  203 (535)
                      ..++..++|-=+|.+|-|..++-.  +++++|+|+|+|+++++.|++.+...+   .++.+++++-.++...     +..
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~~~   92 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLVTK   92 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCCCc
Confidence            467789999999988888776633  456999999999999999999887644   6899999987765432     235


Q ss_pred             cceEEecccc
Q 041205          204 YDCIILAALA  213 (535)
Q Consensus       204 FDvVfiaALV  213 (535)
                      +|.|++|-.|
T Consensus        93 vDgIl~DLGv  102 (305)
T TIGR00006        93 IDGILVDLGV  102 (305)
T ss_pred             ccEEEEeccC
Confidence            7888877665

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.86  E-value=0.0031  Score=66.61  Aligned_cols=99  Identities=21%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC-Ccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG-EYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~-~FD  205 (535)
                      ..+.++++|+-+|.|.+|..++.+|+.  -|++|+++|++++-.+.|+++-+..        ++.+.-.+...... .||
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~--------~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADH--------VINSSDSDALEAVKEIAD  231 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcE--------EEEcCCchhhHHhHhhCc
Confidence            346899999999999999999999994  4699999999999998888663322        22211111122222 299


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      +|+..  +    . ..-+....+.|++||.+++-...
T Consensus       232 ~ii~t--v----~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         232 AIIDT--V----G-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEEEC--C----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence            99874  3    2 45667777799999999986543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.82  E-value=0.0048  Score=62.84  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC---ChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI---DETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI---DpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++++||-+|+|++|+.++.+|+.  .|++|++++.   +++..+.++    ++| . +.+.....|..+ ......||
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~----~~G-a-~~v~~~~~~~~~-~~~~~~~d  240 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVE----ELG-A-TYVNSSKTPVAE-VKLVGEFD  240 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHH----HcC-C-EEecCCccchhh-hhhcCCCC
Confidence            3578999999999999999999994  5789999997   566666554    456 2 112111111111 11124699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-....      ...+....+.|++||.+++-.
T Consensus       241 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATGV------PPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcCC------HHHHHHHHHHccCCcEEEEEe
Confidence            99875432      236788889999999988754

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.79  E-value=0.0079  Score=56.42  Aligned_cols=84  Identities=21%  Similarity=0.271  Sum_probs=62.0

Q ss_pred             EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC--CcceEEeccc-c-C----C---hhhHHHHHHHHH
Q 041205          159 HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG--EYDCIILAAL-A-G----N---EEEKAKILGHIR  227 (535)
Q Consensus       159 ~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~--~FDvVfiaAL-V-g----m---~edK~~VL~eL~  227 (535)
                      +|.|+||-++|++..++.++..| +.++++++.....++.....  .+|+|++.-. . |    .   .+.-...++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            58999999999999999999999 77899999999988776554  4998876421 1 2    1   345567889999


Q ss_pred             hhcccCeEEEEEcccc
Q 041205          228 KYMKEGGVLLVRSAKG  243 (535)
Q Consensus       228 rvLKPGGvLVvRsa~G  243 (535)
                      +.|+|||++++--+.|
T Consensus        80 ~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHEEEEEEEEEEE--S
T ss_pred             HhhccCCEEEEEEeCC
Confidence            9999999988865433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.78  E-value=0.0042  Score=67.84  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcC-----C--CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-----
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHM-----K--STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-----  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l-----~--Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-----  198 (535)
                      .+.+|+|.|||.+++..-.+ .+..     .  ...++|+|+|+.++..++.++...+.  ..+.++++|.....     
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~-~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALL-KKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHHHH-HHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence            46799999999876665444 3221     1  25799999999999999999877662  24566666643211     


Q ss_pred             cCCCCcceEEec
Q 041205          199 EKLGEYDCIILA  210 (535)
Q Consensus       199 ~dL~~FDvVfia  210 (535)
                      ...+.||+|+.-
T Consensus       108 ~~~~~fD~IIgN  119 (524)
T TIGR02987       108 SYLDLFDIVITN  119 (524)
T ss_pred             cccCcccEEEeC
Confidence            122469999865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.67  E-value=0.031  Score=59.29  Aligned_cols=160  Identities=14%  Similarity=0.086  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhhHHHhHhhccCCCcccc---ccCccchhhH---HhHHHH---HHHHHH--hh----CCCCC
Q 041205           68 QQMRQSLIILCARAESLLELEFATYLSKISLPLNDL---NRFPYYENYV---KLAKLE---YGALIE--NT----GVAQL  132 (535)
Q Consensus        68 q~l~~~Lr~lca~AE~~LE~h~A~~Lls~~~pl~~L---~~FpYy~NYv---~LirlE---~~lL~~--~~----~l~~p  132 (535)
                      ..+-+.+-..+.+.......++.+.+..+.++...-   ..|.|..-+.   ..+..=   ...+..  ++    +...-
T Consensus        99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v  178 (342)
T KOG3178|consen   99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV  178 (342)
T ss_pred             CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence            344455666667777778888999998876654443   2366654433   333211   111111  11    22334


Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ...+|+|.|.+-.+..++ . ++|.  |.+|+.|..-+..++.... .|     |+++-||...   +...-|+||+.-.
T Consensus       179 ~~avDvGgGiG~v~k~ll-~-~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq---~~P~~daI~mkWi  245 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLL-S-KYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQ---DTPKGDAIWMKWI  245 (342)
T ss_pred             ceEEEcCCcHhHHHHHHH-H-hCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccc---cCCCcCeEEEEee
Confidence            899999999544454444 4 4654  8889999998888888776 55     7888888753   2334689998866


Q ss_pred             cC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          213 AG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       213 Vg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +| + -++-.++|.++++-|+|||.|++-+
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            65 4 7899999999999999999888865

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.65  E-value=0.0066  Score=62.46  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~  203 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....|..+....  .+.
T Consensus       187 ~~i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         187 AGVRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LG-ATATVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cC-CceEeCCCchhHHHHHHHHhCCC
Confidence            346788999999999999999999993  577 69999999999887765    45 211111111121111111  125


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+||-....      ...+....+.+++||.++.-.
T Consensus       260 ~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         260 VDYAFEMAGS------VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence            8999854322      346777888999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.003  Score=69.70  Aligned_cols=117  Identities=17%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             ccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205          107 PYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR  186 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r  186 (535)
                      .||.+--...+.=+..+...+++..++-++||=||+ |..++.+|+   +-.+|+||++++++++-|++++..-| + .+
T Consensus       359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ng-i-sN  432 (534)
T KOG2187|consen  359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQING-I-SN  432 (534)
T ss_pred             hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcC-c-cc
Confidence            355555555555577777888888999999999995 888899988   45799999999999999999999999 5 68


Q ss_pred             eEEEEccccccccCC-CC----cc-eEEec-cccCChhhHHHHHHHHHhhccc
Q 041205          187 MKFLTCDIMEVKEKL-GE----YD-CIILA-ALAGNEEEKAKILGHIRKYMKE  232 (535)
Q Consensus       187 I~Fi~GDA~el~~dL-~~----FD-vVfia-ALVgm~edK~~VL~eL~rvLKP  232 (535)
                      .+|++|-++++...+ +.    =+ +++++ .-.|+   =..++..+.++-+|
T Consensus       433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl---h~~~ik~l~~~~~~  482 (534)
T KOG2187|consen  433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL---HMKVIKALRAYKNP  482 (534)
T ss_pred             eeeeecchhhccchhcccCCCCCceEEEECCCcccc---cHHHHHHHHhccCc
Confidence            999999877655433 22    24 55555 23343   24456666555434

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.63  E-value=0.01  Score=59.51  Aligned_cols=100  Identities=20%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEcccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIMEV  197 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~el  197 (535)
                      ++|..||+|.+|.+-.....  ..|..|+.+|++++.++.+++.++       +.|.+.        .++++ +.|..  
T Consensus         4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~--   78 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD--   78 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence            47999999998887555443  257799999999999987764322       223111        13443 23321  


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ...+.|+|+.+.--. ..-|..++.++.+.++|+.+|+...
T Consensus        79 --~~~~aDlVi~av~e~-~~~k~~~~~~l~~~~~~~~il~s~t  118 (282)
T PRK05808         79 --DLKDADLVIEAATEN-MDLKKKIFAQLDEIAKPEAILATNT  118 (282)
T ss_pred             --HhccCCeeeeccccc-HHHHHHHHHHHHhhCCCCcEEEECC
Confidence              246789999964321 2568899999999999998885544

>PLN02740 Alcohol dehydrogenase-like

Probab=96.61  E-value=0.011  Score=61.31  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=67.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccccccCC--
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEVKEKL--  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el~~dL--  201 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.|++    +| ...-+....  .|..+....+  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MG-ITDFINPKDSDKPVHERIREMTG  266 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cC-CcEEEecccccchHHHHHHHHhC
Confidence            456789999999999999999999993  577 69999999999888865    46 211121111  0111111111  


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      +.||+||-....      ...+....+.+++| |++++-.
T Consensus       267 ~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        267 GGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEc
Confidence            259999865332      35677777888897 8887744

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.55  E-value=0.0086  Score=61.23  Aligned_cols=101  Identities=19%  Similarity=0.140  Sum_probs=67.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~  202 (535)
                      ..+.++++||-.|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....|..+ +.  ....
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FG-ATHTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcCCCcCHHHHHHHHhCCC
Confidence            345789999999999999999999993  577 59999999998877754    45 21111111112111 11  1113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+|+-....      ...+....+.+++||++++-.
T Consensus       245 g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       245 GADVVIDAVGR------PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence            58988853221      245677788999999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.55  E-value=0.012  Score=59.93  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+.++++||-.|+|++|..++.+|+.  .|++|++++.+++..+.|++    +| ...-+.     ..+  .....+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~G-a~~vi~-----~~~--~~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LG-AASAGG-----AYD--TPPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hC-Cceecc-----ccc--cCcccceE
Confidence            356789999999999999999999994  58899999999998766654    66 221111     111  11135898


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++....++      ..+....+.|++||++++-.
T Consensus       227 ~i~~~~~~------~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       227 AILFAPAG------GLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             EEECCCcH------HHHHHHHHhhCCCcEEEEEe
Confidence            87654442      36888889999999998753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.48  E-value=0.019  Score=58.25  Aligned_cols=98  Identities=22%  Similarity=0.333  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCC-CCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKL-GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL-~~FDvV  207 (535)
                      -.+++||+||=+  =+|||.+|- ..+..+|+.+|||+..++.=++.+++.| +  .|+.+..|..+- |..+ +.||++
T Consensus        43 L~gk~il~lGDD--DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~g-l--~i~~~~~DlR~~LP~~~~~~fD~f  116 (243)
T PF01861_consen   43 LEGKRILFLGDD--DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEG-L--PIEAVHYDLRDPLPEELRGKFDVF  116 (243)
T ss_dssp             STT-EEEEES-T--T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEE
T ss_pred             ccCCEEEEEcCC--cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcC-C--ceEEEEecccccCCHHHhcCCCEE
Confidence            468999999987  578888886 3456899999999999999999999999 4  499999998753 3333 569999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCe
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGG  234 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGG  234 (535)
                      |.+---. .+.-.-++......||.-|
T Consensus       117 ~TDPPyT-~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  117 FTDPPYT-PEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             EE---SS-HHHHHHHHHHHHHTB-STT
T ss_pred             EeCCCCC-HHHHHHHHHHHHHHhCCCC
Confidence            9984332 3566778888888888766

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.42  E-value=0.015  Score=58.72  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc----------CCc--------CCCeEEEEccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD----------DEI--------EKRMKFLTCDI  194 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l----------G~L--------s~rI~Fi~GDA  194 (535)
                      ++|..||+|.+|.+-.....  ..|..|+.+|++++.++.+++.+++.          |.+        ..++.+. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            58999999998876544333  25789999999999999877654431          200        0123332 221


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                          ....+.|+|+.+. ....+.|..++.++.+.++|+.+|+..
T Consensus        81 ----~~~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~S~  120 (291)
T PRK06035         81 ----ESLSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIASN  120 (291)
T ss_pred             ----HHhCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEEc
Confidence                1235689999863 322345899999999999999877643

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.34  E-value=0.013  Score=61.25  Aligned_cols=136  Identities=22%  Similarity=0.259  Sum_probs=100.3

Q ss_pred             hccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH
Q 041205           94 SKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA  173 (535)
Q Consensus        94 ls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA  173 (535)
                      +.+---+.+...|.|-+-|-.+.         .+.+..|++||-||.|-+|+--+.. + |-.=..++-+|+|...++.+
T Consensus        93 lDgviqlte~de~~Yqemi~~l~---------l~s~~npkkvlVVgggDggvlrevi-k-H~~ve~i~~~eiD~~Vie~s  161 (337)
T KOG1562|consen   93 LDGVIQLTERDEFAYQEMIAHLA---------LCSHPNPKKVLVVGGGDGGVLREVI-K-HKSVENILLCEIDENVIESS  161 (337)
T ss_pred             eCCeeeCCccccccceeeeeccc---------cccCCCCCeEEEEecCCccceeeee-c-cccccceeeehhhHHHHHHH
Confidence            33433455667788865554432         2345789999999999988887665 3 43335788899999999999


Q ss_pred             HHHHhhc--CCcCCCeEEEEccccccccCC--CCcceEEecccc--CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          174 RRIVSSD--DEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALA--GN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       174 R~li~~l--G~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALV--gm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++.....  |.-+.+|.++-||+..+....  +.||+|++++.-  |.  .-=...++..+.+.||+||++++-.
T Consensus       162 k~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  162 KQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             HHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            9998764  412478999999998877655  569999988653  32  2234567888999999999999865

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.33  E-value=0.026  Score=56.82  Aligned_cols=101  Identities=22%  Similarity=0.316  Sum_probs=67.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEccccc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIME  196 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~e  196 (535)
                      -++|..||+|.+|.+-.....  ..|..|+.+|.+++.++.+.+.+.+.       |.+.        .++++. .|.  
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--   78 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--   78 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence            468999999998876544333  25789999999999998876543321       3111        234432 232  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ....+.|+|+.+- .....-|..++..+...++|+.+|+..+
T Consensus        79 --~~~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~t  119 (292)
T PRK07530         79 --EDLADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNT  119 (292)
T ss_pred             --HHhcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence              2345789999863 2112458899999999999999887533

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.31  E-value=0.015  Score=55.52  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=67.4

Q ss_pred             EEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEcccccc
Q 041205          134 KVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIMEV  197 (535)
Q Consensus       134 RVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~el  197 (535)
                      +|.-||+|.+|-.- .++|.   .|..|+-+|.|++.++.+++.+++       .|.+        -.++++ ..|..  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~--   74 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR---AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE--   74 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH---TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHh---CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH--
Confidence            58899999988553 34444   589999999999999999887765       1211        135665 33432  


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        +..+.|+|+=+ .....+-|.++|.++.+.++|+.+|...+.
T Consensus        75 --~~~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   75 --EAVDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTS  115 (180)
T ss_dssp             --GGCTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred             --HHhhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence              22368988854 344468999999999999999999988764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.29  E-value=0.015  Score=58.60  Aligned_cols=88  Identities=13%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++++||-+|+|++|+.++.+|+.  .|++ |+.+|.+++..+.|...    + .   +     |..+.  ....||+||
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~--~G~~~v~~~~~~~~rl~~a~~~----~-~---i-----~~~~~--~~~g~Dvvi  205 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKA--AGGSPPAVWETNPRRRDGATGY----E-V---L-----DPEKD--PRRDYRAIY  205 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHhhhhc----c-c---c-----Chhhc--cCCCCCEEE
Confidence            467899999999999999999993  4665 77889998887666532    2 1   1     11100  123599998


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -....      ...++...+.|++||++++-.
T Consensus       206 d~~G~------~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DASGD------PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ECCCC------HHHHHHHHHhhhcCcEEEEEe
Confidence            64332      346788888999999998753

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.28  E-value=0.012  Score=58.28  Aligned_cols=98  Identities=14%  Similarity=0.072  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-cc-ccccccCCCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CD-IMEVKEKLGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GD-A~el~~dL~~FD  205 (535)
                      ..++++||-+|+|++|+.++.+|+.  .|++ |+++|.+++..+.|++    +| ...-+.... .+ +.+.. ....+|
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~~-~~~g~d  189 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FG-ATALAEPEVLAERQGGLQ-NGRGVD  189 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CcEecCchhhHHHHHHHh-CCCCCC
Confidence            3578999999999999999999994  4775 9999999998877765    45 211111100 00 11111 123599


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-....      ...+....+.++|||++++-.
T Consensus       190 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       190 VALEFSGA------TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             EEEECCCC------hHHHHHHHHHhcCCCEEEEec
Confidence            99864322      346778888999999998754

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.019  Score=60.02  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCC----cCCCeEEEEcccccccc
Q 041205          132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDE----IEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~----Ls~rI~Fi~GDA~el~~  199 (535)
                      -++|..||+|.+|..-.. +|.   .|..|+.+|+++++.+.++..++.       .|.    ...++++.. |..   .
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~   79 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A   79 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence            478999999988766333 333   689999999999998887664431       220    113455432 221   2


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.|+|+-+ ...-.+-|..+++++.+.++||.+|...+.
T Consensus        80 av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS  120 (321)
T PRK07066         80 CVADADFIQES-APEREALKLELHERISRAAKPDAIIASSTS  120 (321)
T ss_pred             HhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            23568999875 332246799999999999999996666554

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.26  E-value=0.062  Score=54.26  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----G  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~  202 (535)
                      +.+.++++||.+|.. .|.|.-.++.-..+++.|.+|+.++....-=-.++++-    .||-=+-+||.. |...    .
T Consensus        69 ~~ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~-P~~Y~~lv~  142 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARH-PEKYRMLVE  142 (229)
T ss_dssp             -S--TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTS-GGGGTTTS-
T ss_pred             cCCCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCC-hHHhhcccc
Confidence            356899999999996 58888888874456899999999997654433444432    478778899874 3322    4


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc-ccccccccCCCC------cc-ccCCcEEEEEEc--CCCcce
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS-AKGARAFLYPVV------EH-ELFDFKVLSIFH--PTNDVI  272 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~V------dp-dl~GFeil~v~h--P~~eVI  272 (535)
                      ..|+||.+-.-.  .+-.=+..+....||+||.+++-- +..+..-.-|..      +. .-.||++.+..+  |...- 
T Consensus       143 ~VDvI~~DVaQp--~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~d-  219 (229)
T PF01269_consen  143 MVDVIFQDVAQP--DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERD-  219 (229)
T ss_dssp             -EEEEEEE-SST--THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTT-
T ss_pred             cccEEEecCCCh--HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCC-
Confidence            699999884431  344445566678999999877632 111111111211      00 125899987444  76632 


Q ss_pred             eeeEEEe
Q 041205          273 NSVVLLQ  279 (535)
Q Consensus       273 NSVVvAR  279 (535)
                      ..+|+++
T Consensus       220 H~~vv~~  226 (229)
T PF01269_consen  220 HAMVVGR  226 (229)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            3355554

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.22  E-value=0.02  Score=56.64  Aligned_cols=101  Identities=20%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c-ccCCCCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V-KEKLGEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l-~~dL~~F  204 (535)
                      ..+.++.+||..|+|++|..++.+|+.  .|.+|++++.+++..+.+++    .| ...-+.....+..+ + ......+
T Consensus       161 ~~~~~~~~vli~g~g~vG~~~~~la~~--~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         161 GEVKPGETVLVIGLGGLGLNAVQIAKA--MGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCc
Confidence            346788999999999999999999994  57899999999998877754    45 21111111001100 0 1122459


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-....      ...+.++.+.|++||.++.-.
T Consensus       234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence            988754222      457888999999999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.21  E-value=0.031  Score=57.79  Aligned_cols=98  Identities=16%  Similarity=0.221  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++++||-.|+|++|+.++.+|+.  .|++|+.++.+++...   ..++++| . +. .+...+...+....+.+|+||
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~vi~~~~~~~~~~---~~~~~~G-a-~~-vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKA--FGLKVTVISSSSNKED---EAINRLG-A-DS-FLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCcchhh---hHHHhCC-C-cE-EEcCCCHHHHHhhcCCCCEEE
Confidence            4578999999999999999999994  5789999988875432   2233456 2 11 111111111111123589998


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -....      ...+....+.+++||+++.-.
T Consensus       253 d~~g~------~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        253 DTVSA------VHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             ECCCC------HHHHHHHHHHhcCCcEEEEeC
Confidence            53222      236778889999999998754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.21  E-value=0.013  Score=58.76  Aligned_cols=100  Identities=20%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F  204 (535)
                      .+.++++||-+|+|++|..++.+|++  .|++ |+++|.+++..+.+++    +| ...-+.....+...+..  ....|
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LG-ADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEcCCcchHHHHHHHhCCCCC
Confidence            45789999999999999999999994  5777 9999999998877764    35 21111111111111111  12369


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+||-....      ...+....+.|++||.+++-.
T Consensus       233 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         233 DVAIECSGN------TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            999864322      345667778999999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.15  E-value=0.032  Score=57.65  Aligned_cols=99  Identities=19%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccc----ccccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDI----MEVKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA----~el~~  199 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.|++    +| ...-+....  .+.    .++..
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LG-ATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCeEEcccccchhHHHHHHHHhC
Confidence            456789999999999999999999993  566 79999999998887765    45 211121111  111    11111


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                        +++|+||-....      ...+....+.+++| |+++.-.
T Consensus       254 --~g~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       254 --GGVDYSFECIGN------VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             --CCCCEEEECCCC------HHHHHHHHHHhhcCCCeEEEEe
Confidence              268988864322      34677778889886 8887643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.13  E-value=0.024  Score=60.56  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEcccccccc-CCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVKE-KLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~~-dL~~FDvVf  208 (535)
                      .+-+|||.=|| -|+=+|.+|.......+|+.-|+|+++++..+++++.-| +.+ ++++.+.||..+.. ....||+|=
T Consensus        49 ~~~~~lDalaa-sGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAA-SGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-T-TSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEecccc-ccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence            45699999887 489999999853334689999999999999999999888 666 79999999977653 234699999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +|.. |   -...+|+...+.++.||+|.+-..++
T Consensus       127 lDPf-G---Sp~pfldsA~~~v~~gGll~vTaTD~  157 (377)
T PF02005_consen  127 LDPF-G---SPAPFLDSALQAVKDGGLLCVTATDT  157 (377)
T ss_dssp             E--S-S-----HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred             eCCC-C---CccHhHHHHHHHhhcCCEEEEecccc
Confidence            9944 4   57899999999999999999977543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.10  E-value=0.017  Score=58.88  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---ccccccc---C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKE---K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~---d  200 (535)
                      ..+.++++|+-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....   |..+...   .
T Consensus       162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~t~  234 (349)
T TIGR03201       162 AGLKKGDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG----FG-ADLTLNPKDKSAREVKKLIKAFAK  234 (349)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceEecCccccHHHHHHHHHhhcc
Confidence            346789999999999999999999994  57899999999998887764    35 2111211111   1111111   1


Q ss_pred             CCCcc----eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYD----CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FD----vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..++|    +||-. . |    ....+....+.|++||++++-.
T Consensus       235 ~~g~d~~~d~v~d~-~-g----~~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       235 ARGLRSTGWKIFEC-S-G----SKPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             cCCCCCCcCEEEEC-C-C----ChHHHHHHHHHHhcCCeEEEEC
Confidence            12355    55533 2 2    1346677788999999998754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.10  E-value=0.084  Score=54.36  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc---C-------------------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD---D-------------------------  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l---G-------------------------  181 (535)
                      ..+.+||-=||| +|--+.-+|.   .|-.+.|.|.|--|+=.++-++...   +                         
T Consensus        55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~  130 (270)
T PF07942_consen   55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR  130 (270)
T ss_pred             CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence            456899999999 7888899988   4889999999999977766654420   0                         


Q ss_pred             --C--------cCCCeEEEEccccccccCC---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          182 --E--------IEKRMKFLTCDIMEVKEKL---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       182 --~--------Ls~rI~Fi~GDA~el~~dL---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        |        -..++.+..||-.++-.+.   +.||+|.....+.-+++-.++++.|.++|||||+.|=-.
T Consensus       131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G  202 (270)
T PF07942_consen  131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG  202 (270)
T ss_pred             eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC
Confidence              0        1246777888877765554   469999876555446788999999999999999776543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.09  E-value=0.031  Score=60.74  Aligned_cols=111  Identities=16%  Similarity=0.142  Sum_probs=74.3

Q ss_pred             cchhhHHhHHHHHHHHHHhhCC-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205          108 YYENYVKLAKLEYGALIENTGV-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR  186 (535)
Q Consensus       108 Yy~NYv~LirlE~~lL~~~~~l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r  186 (535)
                      .|+|-..+-+--+..+.+...+ ..+++|+-+|+|++|......++.  .|++|+.+|+|+.....|.    ..| .   
T Consensus       187 ~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~----~~G-~---  256 (425)
T PRK05476        187 KFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAA----MDG-F---  256 (425)
T ss_pred             cccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHH----hcC-C---
Confidence            3466555566666666554332 379999999999999988888873  5889999999997754443    235 2   


Q ss_pred             eEEEEccccccccCCCCcceEEeccccCChhhHHHHHH-HHHhhcccCeEEEEEc
Q 041205          187 MKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILG-HIRKYMKEGGVLLVRS  240 (535)
Q Consensus       187 I~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~-eL~rvLKPGGvLVvRs  240 (535)
                       ++  .+..++   ...+|+|+...  |   . ..++. .....||+|++++.-.
T Consensus       257 -~v--~~l~ea---l~~aDVVI~aT--G---~-~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        257 -RV--MTMEEA---AELGDIFVTAT--G---N-KDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             -Ee--cCHHHH---HhCCCEEEECC--C---C-HHHHHHHHHhcCCCCCEEEEcC
Confidence             11  122222   24689998753  2   2 33565 6788899999887643

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.07  E-value=0.016  Score=55.64  Aligned_cols=101  Identities=20%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      |+|.-||.|=+|++ |.+||+   .|-+|+|+|+|++.++.-++            ++++.. -..+..|. .|..+   
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~~---   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIEE---   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHHH---
T ss_pred             CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhhh---
Confidence            68999999999964 566777   78999999999998887653            222111 02344442 33322   


Q ss_pred             CCCCcceEEeccccCC-------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGN-------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm-------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .....|++|+.---..       ...-..+++.+.+++++|.++++++.
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            1245798887532211       23357889999999999999999985

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.03  E-value=0.037  Score=56.05  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-cCCc-C--------CCeEEEEccccccccC
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS-DDEI-E--------KRMKFLTCDIMEVKEK  200 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-lG~L-s--------~rI~Fi~GDA~el~~d  200 (535)
                      +-++|..||+|.+|.+-.....  ..|.+|+.+|.+++.++.+++.+.+ .|.+ .        .++++ +.|..   ..
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---~~   76 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA---AA   76 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH---HH
Confidence            3468999999998876544333  2578999999999999888774322 1200 0        12332 22221   12


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+.|+||.+ .......+..++..+.+.++++.+|+...
T Consensus        77 ~~~aDlVi~a-v~~~~~~~~~v~~~l~~~~~~~~ii~s~t  115 (311)
T PRK06130         77 VSGADLVIEA-VPEKLELKRDVFARLDGLCDPDTIFATNT  115 (311)
T ss_pred             hccCCEEEEe-ccCcHHHHHHHHHHHHHhCCCCcEEEECC
Confidence            3568999986 33212347889999988887776665443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.01  E-value=0.052  Score=59.79  Aligned_cols=103  Identities=16%  Similarity=0.244  Sum_probs=75.5

Q ss_pred             CCCC-EEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          130 AQLK-KVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pk-RVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .+-. +++-+|||-   +.+..-.  +.+  -.|+++|+|+-+++.....-.+-   ..-++|...|...+.+++.+||+
T Consensus        46 ~p~~~~~l~lGCGN---S~l~e~l--y~~G~~dI~~iD~S~V~V~~m~~~~~~~---~~~~~~~~~d~~~l~fedESFdi  117 (482)
T KOG2352|consen   46 SPSDFKILQLGCGN---SELSEHL--YKNGFEDITNIDSSSVVVAAMQVRNAKE---RPEMQMVEMDMDQLVFEDESFDI  117 (482)
T ss_pred             chhhceeEeecCCC---CHHHHHH--HhcCCCCceeccccHHHHHHHHhccccC---CcceEEEEecchhccCCCcceeE
Confidence            3445 999999985   5555533  222  46999999999998887665432   24689999999999998888999


Q ss_pred             EEe----ccccCC------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IIL----AALAGN------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 Vfi----aALVgm------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+.    +++...      ...+.+.+.+++++++|||+++.-+
T Consensus       118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            984    333311      2256678999999999999866543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.98  E-value=0.053  Score=55.22  Aligned_cols=100  Identities=20%  Similarity=0.327  Sum_probs=69.5

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GDA~e  196 (535)
                      ++|..||+|.+|..--. +|.   .|..|+.+|.+++.++.+++.+++       .|.+.        .++++ +.|.  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--   79 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--   79 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH--
Confidence            58999999988766433 333   689999999999999987765432       22110        23333 2332  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhc-ccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYM-KEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvL-KPGGvLVvRsa  241 (535)
                        ....+.|+|+-+ ...-.+-|..+|..+-+.+ +||.+|+..+.
T Consensus        80 --~~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS  122 (286)
T PRK07819         80 --GDFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS  122 (286)
T ss_pred             --HHhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence              234678999975 3333578999999999988 88988877664

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.98  E-value=0.033  Score=52.59  Aligned_cols=101  Identities=19%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c-ccCCCCcc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V-KEKLGEYD  205 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l-~~dL~~FD  205 (535)
                      .+.++++||..|+|++|..++.+|+.  .|.+|++++.+++..+.+++.    | ...-+.....+... + ......||
T Consensus       131 ~~~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         131 VLKPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKEL----G-ADHVIDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHh----C-CceeccCCcCCHHHHHHHhcCCCCC
Confidence            34788999999999888888888883  579999999999887776543    3 11111111111100 0 11224699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+.....      ...+..+.+.|+++|.++.-..
T Consensus       204 ~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         204 VVIDAVGG------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence            99864322      2567778889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.93  E-value=0.013  Score=61.86  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=64.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|+.||+|++|..++..++.  .|++|+.+|.+++..+.+..   ..|   ..+.....+..++...+..+|+|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~---~~g---~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDA---EFG---GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHH---hcC---ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            57889999999999999999884  57899999999887654433   333   12222112222233334679999987


Q ss_pred             ccc-CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALA-GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALV-gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+ +. ..+.-+-++..+.|+||++|+--.
T Consensus       238 ~~~~g~-~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGA-KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCC-CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            544 21 111123466667899998776533

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02827 Alcohol dehydrogenase-like

Probab=95.90  E-value=0.03  Score=58.36  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=66.4

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccccccC--C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEVKEK--L  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el~~d--L  201 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ .|+++|.+++..+.|++    +| ...-+....  .+..+....  .
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhC
Confidence            346789999999999999999999993  466 69999999988777754    46 311122111  111111111  1


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEE
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVR  239 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvR  239 (535)
                      +.+|+||-....      ...+....+.+++| |++++-
T Consensus       262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEE
Confidence            269999864332      33567778889998 999874

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.89  E-value=0.015  Score=58.68  Aligned_cols=101  Identities=21%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC---------CCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE---------KRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls---------~rI~Fi~GDA~e  196 (535)
                      ++|..||+|.+|.+.-....  ..|..|+.+|++++.++.+++.+++.       +.+.         .++++ +.|..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~   80 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE   80 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence            58999999988866444333  25789999999999999887664321       1010         24443 233322


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ...+.|+|+.+.. .-.+-|..++.++.+.++++.+|+..+
T Consensus        81 ---a~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~snt  120 (287)
T PRK08293         81 ---AVKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFATNS  120 (287)
T ss_pred             ---HhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEECc
Confidence               2356899998633 112468999999999998888775543

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.89  E-value=0.018  Score=58.19  Aligned_cols=90  Identities=16%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             HHHHHHhhCCCCCC--EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCc----CCCeEEE
Q 041205          120 YGALIENTGVAQLK--KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEI----EKRMKFL  190 (535)
Q Consensus       120 ~~lL~~~~~l~~pk--RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~L----s~rI~Fi  190 (535)
                      -+.+.+.+++.++.  +|||.=+| +|-=|+++|.   .|++|+++|.+|-...+-+.-+++   ....    ..||+++
T Consensus        62 ~~~l~kA~Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~  137 (234)
T PF04445_consen   62 GDPLAKAVGLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI  137 (234)
T ss_dssp             GSHHHHHTT-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence            35666767777765  99999999 8999999987   489999999999887766544332   2211    2589999


Q ss_pred             Ecccccccc-CCCCcceEEecccc
Q 041205          191 TCDIMEVKE-KLGEYDCIILAALA  213 (535)
Q Consensus       191 ~GDA~el~~-dL~~FDvVfiaALV  213 (535)
                      ++|+.+.+. ....||+||+|-+.
T Consensus       138 ~~d~~~~L~~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  138 HGDALEYLRQPDNSFDVVYFDPMF  161 (234)
T ss_dssp             ES-CCCHCCCHSS--SEEEE--S-
T ss_pred             cCCHHHHHhhcCCCCCEEEECCCC
Confidence            999988765 23569999999554

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.88  E-value=0.051  Score=54.82  Aligned_cols=101  Identities=25%  Similarity=0.326  Sum_probs=67.0

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEccccc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIME  196 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~e  196 (535)
                      -++|.+||+|.+|..-.....  ..|.+|+.+|.+++.++.+++.++       +.|.+.        .++.+. .+.  
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--   78 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAA--AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL--   78 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH--
Confidence            368999999988876444322  257899999999999987765433       222111        123332 222  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ....+.|+|+.+. ..-...|..++.++...++|+.+|+...
T Consensus        79 --~~~~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s~t  119 (295)
T PLN02545         79 --EELRDADFIIEAI-VESEDLKKKLFSELDRICKPSAILASNT  119 (295)
T ss_pred             --HHhCCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence              1235689999863 3223678999999999999998776544

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.86  E-value=0.042  Score=59.38  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             hhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE
Q 041205          110 ENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK  188 (535)
Q Consensus       110 ~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~  188 (535)
                      +|.--+-+.-+..+.+... ...+++|+-+|+|++|......++  ..|++|+.+|.|+.....|+    ..| .    .
T Consensus       172 Dn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G-~----~  240 (406)
T TIGR00936       172 DNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDG-F----R  240 (406)
T ss_pred             hcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcC-C----E
Confidence            4433344444455555332 357999999999999999999888  36899999999997644443    345 2    2


Q ss_pred             EEEccccccccCCCCcceEEeccccCChhhHHHHHH-HHHhhcccCeEEEEEc
Q 041205          189 FLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILG-HIRKYMKEGGVLLVRS  240 (535)
Q Consensus       189 Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~-eL~rvLKPGGvLVvRs  240 (535)
                      +.  +..+.   ....|+|+...  |    ...++. +....||+|++|+.-.
T Consensus       241 v~--~leea---l~~aDVVItaT--G----~~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       241 VM--TMEEA---AKIGDIFITAT--G----NKDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             eC--CHHHH---HhcCCEEEECC--C----CHHHHHHHHHhcCCCCcEEEEEC
Confidence            21  22221   24579988742  2    244554 4778999999887643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.85  E-value=0.02  Score=59.21  Aligned_cols=86  Identities=20%  Similarity=0.358  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE-
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII-  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf-  208 (535)
                      ....-|+|+|||-.     -+|..  .--.|+..|+-            ..+   .  +++.+|..++|.++...|+++ 
T Consensus       179 ~~~~vIaD~GCGEa-----kiA~~--~~~kV~SfDL~------------a~~---~--~V~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  179 PKNIVIADFGCGEA-----KIASS--ERHKVHSFDLV------------AVN---E--RVIACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             cCceEEEecccchh-----hhhhc--cccceeeeeee------------cCC---C--ceeeccccCCcCccCcccEEEe
Confidence            45678999999952     23321  23468888764            122   2  457799999998888899665 


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +-++.|  .+-..++.++.|+|+|||.+-+-..
T Consensus       235 CLSLMg--tn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  235 CLSLMG--TNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             eHhhhc--ccHHHHHHHHHHHhccCceEEEEeh
Confidence            556666  7999999999999999999988654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.85  E-value=0.042  Score=55.83  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      -++|+.||+|.+|.+............+|+++|.+++..+.++    ..| ...  . ...+..   ......|+|+++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g-~~~--~-~~~~~~---~~~~~aDvViiav   74 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELG-LGD--R-VTTSAA---EAVKGADLVILCV   74 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCC-CCc--e-ecCCHH---HHhcCCCEEEECC
Confidence            3689999999888765444332111248999999999877665    345 211  1 122221   1235689999975


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      -.   .....++..+...++||++|+
T Consensus        75 p~---~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         75 PV---GASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CH---HHHHHHHHHHHhhCCCCCEEE
Confidence            55   345778888888899988664

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.81  E-value=0.028  Score=56.89  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F  204 (535)
                      .+.++++||-.|+|++|..++.+|+.  .|++ |+++|.+++..+.+++    .| ...-+.....+..++..  ....+
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LG-AMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CceEecCcccCHHHHHHHhcCCCC
Confidence            45688999999999999999999994  5776 7999999998877654    45 21111111111111111  11358


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |.+++++. |    -...+....+.|++||.+++-.
T Consensus       230 d~~v~d~~-G----~~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        230 DQLILETA-G----VPQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CeEEEECC-C----CHHHHHHHHHHhhcCCEEEEEc
Confidence            84555433 3    1457788889999999998754

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.80  E-value=0.063  Score=55.28  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--ccccccc--CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVKE--KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~~--dL  201 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ .|+++|.+++..+.+++    +| ...-+.....  |..+...  ..
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FG-ATDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCEEEcccccchHHHHHHHHHhC
Confidence            346789999999999999999999994  577 79999999998877764    46 2111211111  1111110  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      +++|+||-....      ...+....+.+++| |++++-.
T Consensus       255 ~g~d~vid~~g~------~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         255 GGVDYTFECIGN------VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             CCCcEEEECCCC------hHHHHHHHHhhccCCCeEEEEc
Confidence            369999864221      34677778889887 8887653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.78  E-value=0.99  Score=46.56  Aligned_cols=98  Identities=21%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|+.||+|++|......... ..+..|+.+|.+++..   +.+.+..| .    ..+..  .++......+|+||.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~-~g~~~V~v~~r~~~ra---~~la~~~g-~----~~~~~--~~~~~~l~~aDvVi~  244 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAA-KGVAEITIANRTYERA---EELAKELG-G----NAVPL--DELLELLNEADVVIS  244 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHH-cCCCEEEEEeCCHHHH---HHHHHHcC-C----eEEeH--HHHHHHHhcCCEEEE
Confidence            468999999999988776665552 2346799999998643   33444456 2    12221  122223456899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +...   +....++..+.+....++.++++-+
T Consensus       245 at~~---~~~~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         245 ATGA---PHYAKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             CCCC---CchHHHHHHHHhhCCCCCeEEEEeC
Confidence            7554   2334445554443333577777654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=95.78  E-value=0.073  Score=55.98  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEc-cCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhc----CCcCCCeEEEE----cccccc
Q 041205          128 GVAQLKKVAFVG-SGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSD----DEIEKRMKFLT----CDIMEV  197 (535)
Q Consensus       128 ~l~~pkRVLeIG-SGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~l----G~Ls~rI~Fi~----GDA~el  197 (535)
                      .+.++++|+-+| +|++|..++.+|+...-| .+|+++|.+++..+.|+++....    |   ....++.    .|..+.
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G---a~~~~i~~~~~~~~~~~  248 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG---IELLYVNPATIDDLHAT  248 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC---ceEEEECCCccccHHHH
Confidence            457789999997 799999999999942123 37999999999999998864322    3   1111221    111111


Q ss_pred             c---cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          198 K---EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       198 ~---~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .   .....||+|+.....      ...+....+.++++|.+++-
T Consensus       249 v~~~t~g~g~D~vid~~g~------~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         249 LMELTGGQGFDDVFVFVPV------PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHhCCCCCCEEEEcCCC------HHHHHHHHHHhccCCeEEEE
Confidence            1   112359999875322      35677888899988866553

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.72  E-value=0.035  Score=55.89  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEcccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCDIMEV  197 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GDA~el  197 (535)
                      ++|..||+|.+|.+.-....  ..|..|+.+|+|++.++.+.+.+..       .|.+.        .++++ +.|..  
T Consensus         2 ~~V~VIG~G~mG~~iA~~la--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--   76 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA--VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK--   76 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH--
Confidence            58999999998877433322  2578999999999999988764322       11110        12333 22321  


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       ....+.|+|+.+-.- -..-|..++.++.+.++||.+|++...
T Consensus        77 -~~~~~aD~Vi~avpe-~~~~k~~~~~~l~~~~~~~~il~~~tS  118 (288)
T PRK09260         77 -AAVADADLVIEAVPE-KLELKKAVFETADAHAPAECYIATNTS  118 (288)
T ss_pred             -HhhcCCCEEEEeccC-CHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence             223568999986332 134478899999999999988766553

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.72  E-value=0.056  Score=55.58  Aligned_cols=99  Identities=23%  Similarity=0.254  Sum_probs=66.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--c----cccccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--D----IMEVKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--D----A~el~~  199 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+....-  +    +.++. 
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~-  251 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FG-ATDFINPKDSDKPVSEVIREMT-  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCcEeccccccchHHHHHHHHh-
Confidence            356789999999999999999999994  467 79999999998887754    45 2111111110  0    11111 


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      . .++|+||-..  |    ....+....+.|++| |.+++-.
T Consensus       252 ~-~g~d~vid~~--g----~~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         252 G-GGVDYSFECT--G----NADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             C-CCCCEEEECC--C----ChHHHHHHHHhcccCCCEEEEEc
Confidence            2 3699988532  2    134677788899886 8887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.68  E-value=0.058  Score=54.32  Aligned_cols=101  Identities=21%  Similarity=0.208  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++++||-.|+|++|..++.+|+.  .|.+|+.++.+++..+.+++    +| ...-+.....+..+....++++|+|
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d~v  232 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAK--MGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAKLI  232 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCCEE
Confidence            56788999999999999999999994  57899999999887776654    45 2111111111211111223468988


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +-. . |    ....+....+.|++||.++.-..
T Consensus       233 i~~-~-g----~~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         233 LAT-A-P----NAKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             EEC-C-C----chHHHHHHHHHcccCCEEEEEec
Confidence            843 2 1    13478888999999999987543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.65  E-value=0.072  Score=54.67  Aligned_cols=101  Identities=16%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--ccccccc--CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVKE--KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~~--dL  201 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....  +..+...  ..
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  255 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FG-VTEFVNPKDHDKPVQEVIAEMTG  255 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcccccchhHHHHHHHHhC
Confidence            456789999999999999999999993  566 89999999998877754    55 2111111110  1111000  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      +.+|+|+-....      ...+....+.+++| |++++-.
T Consensus       256 ~~~d~vid~~G~------~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         256 GGVDYSFECTGN------IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CCCCEEEECCCC------hHHHHHHHHHhhcCCCEEEEEC
Confidence            258988753221      34666677889996 8887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.65  E-value=0.084  Score=54.90  Aligned_cols=108  Identities=21%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-ccc-ccc--CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-IME-VKE--KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A~e-l~~--dL  201 (535)
                      ..+.++.+||.+|+|++|..++.+|+.  .|. +|+++|.+++..+.+++..   | . ..+.+...+ ..+ +..  ..
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~  252 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGG  252 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCC
Confidence            445788999999999999999999994  455 6999999999988888752   3 1 112222221 111 111  11


Q ss_pred             CCcceEEeccccC---------------ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAG---------------NEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVg---------------m~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..+|+||-...-.               ...++...+..+.+.|+|||.++.-..
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            2589887642110               013456789999999999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.65  E-value=0.065  Score=53.66  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-ccccccc--CC
Q 041205          126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKE--KL  201 (535)
Q Consensus       126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~--dL  201 (535)
                      ...+.++++||-.| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+..... +..+...  ..
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~----lG-a~~vi~~~~~~~~~~~~~~~~~  205 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK----LG-FDVAFNYKTVKSLEETLKKASP  205 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeccccccHHHHHHHhCC
Confidence            34567899999999 69999999999994  68899999999887766654    45 2111111111 1111111  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +++|+||-.  +|   .  ..+....+.|++||+++.-.
T Consensus       206 ~gvdvv~d~--~G---~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       206 DGYDCYFDN--VG---G--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CCeEEEEEC--CC---H--HHHHHHHHHhCcCcEEEEec
Confidence            359998842  33   1  24578889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.53  E-value=0.066  Score=55.08  Aligned_cols=101  Identities=13%  Similarity=0.057  Sum_probs=67.6

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccC--CC
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEK--LG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~d--L~  202 (535)
                      ..+.++++||-.|+ |++|..++.+|+.  .|++|++++.+++..+.+++   .+| ...-+..... |..+....  .+
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---KLG-FDEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---hcC-CCEEEECCCcccHHHHHHHHCCC
Confidence            45678999999998 9999999999994  58999999999887666542   345 2211221111 22111111  13


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+||-.  +|     ...+....+.|++||.+++-.
T Consensus       228 gvD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDN--VG-----GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEEC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence            69988842  33     136788889999999998743

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.51  E-value=0.04  Score=58.28  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -++.+|.-||.|-.|+-+--+|-  .-|+.|+-+|+|.+++..-...+      ..|+....-+..++......+|+|+-
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~f------~~rv~~~~st~~~iee~v~~aDlvIg  237 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDLF------GGRVHTLYSTPSNIEEAVKKADLVIG  237 (371)
T ss_pred             CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHhh------CceeEEEEcCHHHHHHHhhhccEEEE
Confidence            56789999999999999999987  47899999999998876544432      24677777777777667778999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +-++.-...+.-+.+++.+.|+||++++=
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            87775445667789999999999998753

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.46  E-value=0.11  Score=53.45  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|+-+|+|++|..++.+|+.  .|++|+.++.+++....+.   +++| . +. .+...+...+......+|+||
T Consensus       178 ~~~g~~vlV~G~G~vG~~av~~Ak~--~G~~vi~~~~~~~~~~~~~---~~~G-a-~~-~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        178 KQSGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSDKKREEAL---EHLG-A-DD-YLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH---HhcC-C-cE-EecCCChHHHHHhcCCCcEEE
Confidence            3578999999999999999999994  5788999998887644432   3456 2 11 111111111111123589888


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -....      ...+....+.+++||+++.-.
T Consensus       250 d~~g~------~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        250 DTVPV------FHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             ECCCc------hHHHHHHHHHhccCCEEEEEC
Confidence            54221      346777888999999988754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.44  E-value=0.071  Score=52.76  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=67.3

Q ss_pred             hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCC
Q 041205          126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLG  202 (535)
Q Consensus       126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~  202 (535)
                      ...+.++++||-.| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|..+...  ...
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~  210 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPD  210 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCC
Confidence            34567899999999 79999999999994  68899999999987776654    45 21112211112111111  114


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++|+||-  .+|   .  ..+....+.+++||.++.-
T Consensus       211 gvd~vld--~~g---~--~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         211 GIDCYFD--NVG---G--EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             CcEEEEE--CCC---H--HHHHHHHHhhccCCEEEEE
Confidence            5998884  333   1  4578889999999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.42  E-value=0.21  Score=50.24  Aligned_cols=142  Identities=15%  Similarity=0.221  Sum_probs=90.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC----C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL----G  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL----~  202 (535)
                      +++.++++||.+|.- -|.|.-.++. ..+.+.|.+|+.++.....=-.++++    ..||-=+.+||.. |...    .
T Consensus        72 ~pi~~g~~VLYLGAa-sGTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA~~-P~~Y~~~Ve  144 (231)
T COG1889          72 FPIKEGSKVLYLGAA-SGTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDARK-PEKYRHLVE  144 (231)
T ss_pred             CCcCCCCEEEEeecc-CCCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHh----CCCceeeecccCC-cHHhhhhcc
Confidence            467899999999995 6888888887 56678999999999886544444444    2577778899853 3322    4


Q ss_pred             CcceEEeccccCChhhHHH-HHHHHHhhcccCeEEEEEc-ccccccccCCC------Ccc-ccCCcEEEEEEc--CCCcc
Q 041205          203 EYDCIILAALAGNEEEKAK-ILGHIRKYMKEGGVLLVRS-AKGARAFLYPV------VEH-ELFDFKVLSIFH--PTNDV  271 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~-VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~------Vdp-dl~GFeil~v~h--P~~eV  271 (535)
                      ..|+||.|-.-   ++-.+ +..+....||+||.+++-- +.....---|.      +.. .-.||++....+  |.+.-
T Consensus       145 ~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~D  221 (231)
T COG1889         145 KVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKD  221 (231)
T ss_pred             cccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccc
Confidence            58999987333   34444 4566788999999554421 22211111121      111 236899998777  76643


Q ss_pred             eeeeEEEe
Q 041205          272 INSVVLLQ  279 (535)
Q Consensus       272 INSVVvAR  279 (535)
                       ...|+++
T Consensus       222 -H~~i~~~  228 (231)
T COG1889         222 -HALIVAK  228 (231)
T ss_pred             -eEEEEEe
Confidence             2244444

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.40  E-value=0.11  Score=52.88  Aligned_cols=110  Identities=10%  Similarity=0.053  Sum_probs=71.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc----CCCcEEEEEeC--------------------------ChhHHHHHHHHHhh
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH----MKSTHFDNIDI--------------------------DETANNLARRIVSS  179 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~----l~Ga~VtGIDI--------------------------DpeAIelAR~li~~  179 (535)
                      .-+--|+|.||- -|.|+++++.-+    .++-+|.+.|-                          .....+..++++.+
T Consensus        73 ~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   73 DVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             CCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            567799999997 566666664311    24556777762                          11256667777888


Q ss_pred             cCCcCCCeEEEEccccccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          180 DDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       180 lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      .|.+.+++.|+.|...+.+...  ..+-++.+|..+  -+.-..+|+.++..|.|||+|++++++
T Consensus       152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            8855679999999987655432  346666676544  467889999999999999999999863

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.40  E-value=0.072  Score=55.73  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=63.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++++|+-.|+|++|..++.+|+.  .|++|+.+|.+++. .+.+    +.+| ...-+..  .+...+....+.+|+||
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~Vi~~~~~~~~~~~~a----~~lG-a~~~i~~--~~~~~v~~~~~~~D~vi  247 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKA--FGLRVTVISRSSEKEREAI----DRLG-ADSFLVT--TDSQKMKEAVGTMDFII  247 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHH--cCCeEEEEeCChHHhHHHH----HhCC-CcEEEcC--cCHHHHHHhhCCCcEEE
Confidence            478999999999999999999994  58899999987653 3333    4466 3111111  11111111123589998


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -....      ...+....+.+++||.++.-.
T Consensus       248 d~~G~------~~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        248 DTVSA------EHALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             ECCCc------HHHHHHHHHhhcCCCEEEEEc
Confidence            64322      346778888999999998754

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.38  E-value=0.05  Score=57.02  Aligned_cols=80  Identities=18%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc------CCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE------KLG  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~------dL~  202 (535)
                      ..++..++|-=-|.+|-|..+|.+  +++++|+|+|.|+++++.|++.+...+   +++.|+.++-.++..      ...
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~~~~~   92 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKELNGIN   92 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHTTTTS
T ss_pred             cCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHccCCC
Confidence            467788899766667999988865  677999999999999999998877654   799999888654332      112


Q ss_pred             CcceEEecccc
Q 041205          203 EYDCIILAALA  213 (535)
Q Consensus       203 ~FDvVfiaALV  213 (535)
                      .+|-|++|-.+
T Consensus        93 ~~dgiL~DLGv  103 (310)
T PF01795_consen   93 KVDGILFDLGV  103 (310)
T ss_dssp             -EEEEEEE-S-
T ss_pred             ccCEEEEcccc
Confidence            35555555443

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.28  E-value=0.059  Score=54.55  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE--KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~--dL~  202 (535)
                      ..+.++++||-.|+|++|..++.+|+.  .|. .|+++|.+++..+.+++    .| ...-+.....+..+ +..  .-.
T Consensus       162 ~~~~~g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~~  234 (351)
T cd08285         162 ANIKLGDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGGK  234 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCCC
Confidence            346788999999999999999999994  466 69999999988877764    45 21112211111111 111  113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+|+|+-...-      ...+..+.+.|+++|+++.-.
T Consensus       235 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         235 GVDAVIIAGGG------QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCcEEEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence            59988864221      356788899999999998643

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=95.28  E-value=0.02  Score=58.45  Aligned_cols=103  Identities=12%  Similarity=0.060  Sum_probs=78.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .-..+++|||| .|.-+-.+-.+  .-.+++-+|-+..|++-++..-  +.  +-.+...++|-..+++..+.||+|+.+
T Consensus        72 ~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q--dp--~i~~~~~v~DEE~Ldf~ens~DLiisS  144 (325)
T KOG2940|consen   72 SFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ--DP--SIETSYFVGDEEFLDFKENSVDLIISS  144 (325)
T ss_pred             hCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhccC--CC--ceEEEEEecchhcccccccchhhhhhh
Confidence            34589999998 56655555331  2357899999999998877541  12  235778889977777777889999987


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -..|+.-+-...+.+|+..|||+|.++-.-
T Consensus       145 lslHW~NdLPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  145 LSLHWTNDLPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             hhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence            666777888999999999999999998643

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=95.26  E-value=0.1  Score=52.05  Aligned_cols=102  Identities=17%  Similarity=0.263  Sum_probs=68.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccc-cccccCCCCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDI-MEVKEKLGEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA-~el~~dL~~F  204 (535)
                      ..+.++.+||-.|+|++|..++.+|+. ..|++|++++.+++..+.+++    .| ...-+.... .+. ..+....+++
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~  231 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA  231 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence            356789999999999999999999993 348999999999998877754    45 211111100 110 1111112358


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++++.-      ...+....+.+++||.++.-.
T Consensus       232 d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        232 HAAVVTAVA------KAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             cEEEEeCCC------HHHHHHHHHhccCCCEEEEEe
Confidence            877776432      346888899999999988753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.23  E-value=0.021  Score=63.05  Aligned_cols=101  Identities=13%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEE---eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNI---DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI---DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..-+.+||||||...+.|-++.+    +..+..+   |..+..++.|-    +-| +-.-+... |. ..++++.+.||+
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfal----eRG-vpa~~~~~-~s-~rLPfp~~~fDm  184 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFAL----ERG-VPAMIGVL-GS-QRLPFPSNAFDM  184 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhh----hcC-cchhhhhh-cc-ccccCCccchhh
Confidence            34478999999987777766543    3333222   44444444443    234 21111111 11 357888889999


Q ss_pred             EEec-cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILA-ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 Vfia-ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |-.+ .++.+.+.-.-+|-++-|+|+|||+++...+
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence            9966 5555545556789999999999999988654

; GO: 0008168 methyltransferase activity

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.18  E-value=0.092  Score=52.86  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=58.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|..||+|.+|.+-.....  ..|.+|+++|.+++..+.+.+    .| .   +.....+.    ....+.|+||++.-
T Consensus         1 m~I~IIG~G~mG~sla~~L~--~~g~~V~~~d~~~~~~~~a~~----~g-~---~~~~~~~~----~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLR--SLGHTVYGVSRRESTCERAIE----RG-L---VDEASTDL----SLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHH----CC-C---cccccCCH----hHhcCCCEEEEcCC
Confidence            47999999988876444333  247799999999998877654    34 1   11111121    12356899999754


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .   ..-.++++++...++||.++ +.
T Consensus        67 ~---~~~~~~~~~l~~~l~~~~ii-~d   89 (279)
T PRK07417         67 I---GLLLPPSEQLIPALPPEAIV-TD   89 (279)
T ss_pred             H---HHHHHHHHHHHHhCCCCcEE-Ee
Confidence            4   34566788888888887554 44

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=95.17  E-value=0.082  Score=53.52  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~  202 (535)
                      ..+.++.+||-.|+|++|..++.+|+.  .|+ +|+.++.+++..+.+++    .| ...-+.....+..+ +.  ....
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LG-ATIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEECCCccCHHHHHHHHhCCC
Confidence            456788999999999999999999994  577 89999999998887765    35 21111112222111 11  1113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+|+|+-...-      ...+....+.|++||.++.-..
T Consensus       241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence            49999864322      2367788889999999987543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.15  E-value=0.049  Score=58.51  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~FD  205 (535)
                      -.|++|||||-||+  |++|-+....|+- .++-++.++..-+....+.+..+ . ........|+..-..++   +.||
T Consensus       112 fapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~yt  187 (484)
T COG5459         112 FAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADLYT  187 (484)
T ss_pred             cCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCccceee
Confidence            46788999999964  7777766555643 46667888888888877777665 2 33445555554322222   2488


Q ss_pred             eEEec-cccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILA-ALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfia-ALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++. -+++|  ..+-...+++++..+.|||.|++-.
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            88754 44455  2333558999999999999988865

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.13  E-value=0.022  Score=59.20  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.-++++|||-+=++.      ..|.+.++|.|++...+..|++    .|.  +  ....+|+..++.....||.++.
T Consensus        44 ~~gsv~~d~gCGngky~~------~~p~~~~ig~D~c~~l~~~ak~----~~~--~--~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG------VNPLCLIIGCDLCTGLLGGAKR----SGG--D--NVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             CCcceeeecccCCcccCc------CCCcceeeecchhhhhcccccc----CCC--c--eeehhhhhcCCCCCCccccchh
Confidence            458999999999643332      1378899999999988877663    331  1  4567999999988888999997


Q ss_pred             ccccCC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGN---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      -|..|+   ......+++++.++++|||-..+-
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            666653   788899999999999999976553

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.05  E-value=0.085  Score=54.24  Aligned_cols=89  Identities=12%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+++|+-||.|.+|.+.+..+++  .|++|+.+|.+++..+.++    ..| .    +++.  ..++......+|+||..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~~~~~~~~----~~G-~----~~~~--~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKSAHLARIT----EMG-L----SPFH--LSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HcC-C----eeec--HHHHHHHhCCCCEEEEC
Confidence            68999999999999999888874  5899999999988655543    456 2    2221  11223334679999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .-.+      -+-+...+.|+||++++-
T Consensus       218 ~p~~------~i~~~~l~~~~~g~vIID  239 (296)
T PRK08306        218 IPAL------VLTKEVLSKMPPEALIID  239 (296)
T ss_pred             CChh------hhhHHHHHcCCCCcEEEE
Confidence            3221      233556678999887653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.92  E-value=0.18  Score=55.28  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             CCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCC--c--CCCeEEEEcccccccc
Q 041205          132 LKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDE--I--EKRMKFLTCDIMEVKE  199 (535)
Q Consensus       132 pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~--L--s~rI~Fi~GDA~el~~  199 (535)
                      -++|.+||+|.+|.+- ..++.   .|..|+.+|++++..+...+..+       .+..  +  ..++++. .|.   ..
T Consensus         4 i~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~e   76 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AE   76 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HH
Confidence            3689999999887663 23334   57899999999999876443211       1110  0  0124432 222   12


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ...+.|+|+.+ ...-.+-|..++..+...++|+.+|.. +..|
T Consensus        77 a~~~aD~Viea-vpe~~~vk~~l~~~l~~~~~~~~iI~S-sTsg  118 (495)
T PRK07531         77 AVAGADWIQES-VPERLDLKRRVLAEIDAAARPDALIGS-STSG  118 (495)
T ss_pred             HhcCCCEEEEc-CcCCHHHHHHHHHHHHhhCCCCcEEEE-cCCC
Confidence            23568999975 432234488899999888888765544 4334

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=94.91  E-value=0.064  Score=60.32  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc------CC-----CcEEEEEeCCh--------------hHHHHHHHHHhh-----
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH------MK-----STHFDNIDIDE--------------TANNLARRIVSS-----  179 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~------l~-----Ga~VtGIDIDp--------------eAIelAR~li~~-----  179 (535)
                      ...-+|+|+|=| .|+-.+...+..      -+     .-+++++|.+|              +..+.+.++...     
T Consensus        56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (662)
T PRK01747         56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL  134 (662)
T ss_pred             CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence            345799999999 588666555422      12     24899999865              223334444432     


Q ss_pred             cCC----c-CC--CeEEEEccccccccCC-CCcceEEeccccCC-hh--hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          180 DDE----I-EK--RMKFLTCDIMEVKEKL-GEYDCIILAALAGN-EE--EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       180 lG~----L-s~--rI~Fi~GDA~el~~dL-~~FDvVfiaALVgm-~e--dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .|.    + +.  .+++..||+.+....+ ..||++|+|+.-.- .+  =-.++|.++++.++|||+++.-+.
T Consensus       135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~  207 (662)
T PRK01747        135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS  207 (662)
T ss_pred             CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence            120    0 12  4557889998776666 35999999976521 11  127899999999999999998774

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.89  E-value=0.12  Score=54.19  Aligned_cols=82  Identities=20%  Similarity=0.123  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----CC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----GE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~~  203 (535)
                      +.++...+|.=-|.+|.|-..|-+ +.+.++++|+|.|+.+++.|++.....+   +|++|++++-.++...+     +.
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i~~   96 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGIGK   96 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCCCc
Confidence            467788888877888999999876 4446779999999999999999988866   69999998765543322     35


Q ss_pred             cceEEeccccC
Q 041205          204 YDCIILAALAG  214 (535)
Q Consensus       204 FDvVfiaALVg  214 (535)
                      +|-|++|-.|.
T Consensus        97 vDGiL~DLGVS  107 (314)
T COG0275          97 VDGILLDLGVS  107 (314)
T ss_pred             eeEEEEeccCC
Confidence            77777776663

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.87  E-value=0.15  Score=51.13  Aligned_cols=96  Identities=17%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++.+||-.|+|.+|..++.+|++  .|. +|++++.+++..+.+++    .| ...-+.....+..+.......||+|+-
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd~vld  237 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFDVVFE  237 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCccEEEE
Confidence            78999999999889999999994  477 79999999888776654    34 211111111111112222234999986


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ....      ...+..+.+.|+++|+++.-
T Consensus       238 ~~g~------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         238 ASGA------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             CCCC------HHHHHHHHHHHhcCCEEEEE
Confidence            4322      34578888999999999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.81  E-value=0.1  Score=55.69  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~F  204 (535)
                      ....+++.|+-+|||.+|+++|.-|+ .....+|++||++++..++|+++=.... +..+ +.  +|+.+...++  +..
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~fGAT~~-vn~~-~~--~~vv~~i~~~T~gG~  255 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKKFGATHF-VNPK-EV--DDVVEAIVELTDGGA  255 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHhcCCcee-ecch-hh--hhHHHHHHHhcCCCC
Confidence            45689999999999999999999999 4656789999999999999987633222 1110 00  0333333332  258


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++|-.  +|    ..++++.....+.++|..++-.
T Consensus       256 d~~~e~--~G----~~~~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         256 DYAFEC--VG----NVEVMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             CEEEEc--cC----CHHHHHHHHHHHhcCCeEEEEe
Confidence            888753  22    2448888888888899888755

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.72  E-value=0.15  Score=51.14  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CCCCC--CEEEEEcc-CCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CC
Q 041205          128 GVAQL--KKVAFVGS-GPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KL  201 (535)
Q Consensus       128 ~l~~p--kRVLeIGS-GplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL  201 (535)
                      .+.++  ++||-.|. |++|..++.+|++  .|+ +|++++.+++..+.+++   .+| ...-+.....+..+...  ..
T Consensus       149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~---~lG-a~~vi~~~~~~~~~~i~~~~~  222 (345)
T cd08293         149 HITPGANQTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKS---ELG-FDAAINYKTDNVAERLRELCP  222 (345)
T ss_pred             cCCCCCCCEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH---hcC-CcEEEECCCCCHHHHHHHHCC
Confidence            34544  89999996 9999999999994  577 89999999887666554   245 22111111112111111  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .++|+||-.  +|   ..  .+....+.|++||+++.-
T Consensus       223 ~gvd~vid~--~g---~~--~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         223 EGVDVYFDN--VG---GE--ISDTVISQMNENSHIILC  253 (345)
T ss_pred             CCceEEEEC--CC---cH--HHHHHHHHhccCCEEEEE
Confidence            469999843  22   11  357788899999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=94.70  E-value=0.18  Score=48.95  Aligned_cols=97  Identities=20%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..+.++.+||-.|+|++|..++.+|++  .|.+ |++++.+++..+.++++    | ..+.+.....+   . ....++|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~----g-~~~~~~~~~~~---~-~~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEAL----G-PADPVAADTAD---E-IGGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHc----C-CCccccccchh---h-hcCCCCC
Confidence            355789999999999999999999994  4677 99999999988777654    3 11222111111   1 1224699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-....      ...+....+.|+++|.++.-.
T Consensus       162 ~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASGS------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence            98864332      236788888999999998643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.66  E-value=0.2  Score=49.78  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=57.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC---CCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE---KRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls---~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|+.||+|.+|.+......  ..|..|+.+|.+++.++..++    .| +.   ..... .....+-+.+...+|+||+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~----~g-~~~~~~~~~~-~~~~~~~~~~~~~~d~vil   72 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALA--QAGHDVTLVARRGAHLDALNE----NG-LRLEDGEITV-PVLAADDPAELGPQDLVIL   72 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCeEEEEECChHHHHHHHH----cC-CcccCCceee-cccCCCChhHcCCCCEEEE
Confidence            47999999998865433322  257899999998877654443    24 21   11111 0001111112357999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      + ...  .+-..++..+.+.+.++..++.
T Consensus        73 a-~k~--~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         73 A-VKA--YQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             e-ccc--ccHHHHHHHHhhhcCCCCEEEE
Confidence            6 332  3567888999988888866654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.65  E-value=0.11  Score=51.89  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEcccc-ccccCCCCcce
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIM-EVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~-el~~dL~~FDv  206 (535)
                      ++|+.||+|++|.+.-. |++   .|..|+.++. ++.++..++    .|.    ......+ ...+. +.......+|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~   71 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL   71 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence            48999999998885443 444   4778999999 666554332    231    0011111 11111 11111257999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ||++.--   .+-..++..+...+.++.+|+.
T Consensus        72 vilavk~---~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         72 VILAVKA---YQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             EEEEecc---cCHHHHHHHHHhhcCCCCEEEE
Confidence            9996333   3567788889888888876654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.033  Score=54.36  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=76.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc---CCcCCCeEEEEcccc--ccccCCCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD---DEIEKRMKFLTCDIM--EVKEKLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l---G~Ls~rI~Fi~GDA~--el~~dL~~F  204 (535)
                      -.+.+|+++|.|-.|++++++|. ..|...|.-.|-++++++--++....-   + + .+...+.-+..  .....-..|
T Consensus        28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-~-tsc~vlrw~~~~aqsq~eq~tF  104 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNMASS-L-TSCCVLRWLIWGAQSQQEQHTF  104 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhcccccc-c-ceehhhHHHHhhhHHHHhhCcc
Confidence            34689999999999999999998 688899999999999998887765542   2 1 22212111110  011122369


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+|+.+-=+=..+..+.+.+-|+.+|+|.|.=++-++
T Consensus       105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP  141 (201)
T KOG3201|consen  105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP  141 (201)
T ss_pred             cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence            9998652221257788899999999999998666665

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.61  E-value=0.22  Score=55.04  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             CCCCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEcc
Q 041205          130 AQLKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCD  193 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GD  193 (535)
                      .+-++|..||+|.+|..-- .+|.   .|..|+.+|++++.++.+++.+++       .|.+        -.++++. .|
T Consensus         3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~   78 (503)
T TIGR02279         3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD   78 (503)
T ss_pred             CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence            4567899999999885533 3344   688999999999999988654332       1211        0234442 23


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .    ..+.+.|+|+-+ .....+-|..+|.++.+.++|+.+|...+
T Consensus        79 ~----~~l~~aDlVIEa-v~E~~~vK~~vf~~l~~~~~~~~IlasnT  120 (503)
T TIGR02279        79 L----HALADAGLVIEA-IVENLEVKKALFAQLEELCPADTIIASNT  120 (503)
T ss_pred             H----HHhCCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence            2    233578999985 33324679999999999999998887655

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.59  E-value=0.23  Score=42.64  Aligned_cols=93  Identities=12%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceEEec
Q 041205          135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCIILA  210 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvVfia  210 (535)
                      |+-+|+|.+|....-...  ..+..|+.||.|++.++.++    ..|     +.++.||+.+...    ....+|.|++.
T Consensus         1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~----~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELR----EEG-----VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHH----HTT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHH----hcc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence            678999876655544444  13348999999999977665    334     4689999976321    33568888876


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..-   ....-.+....+.+.|...++++..
T Consensus        70 ~~~---d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   70 TDD---DEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             SSS---HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             cCC---HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            443   3445555566677889998888764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.57  E-value=0.27  Score=53.80  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=82.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CC-CCcce
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KL-GEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL-~~FDv  206 (535)
                      ..++.||||.-+-|+|=|+- +|.-+--.+.|.+-|.+...+..=+.++.++| + ++.-....|+.+++. .. +.||-
T Consensus       239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v-~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLG-V-TNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhC-C-CceEEEccCcccccccccCcccce
Confidence            47899999999999998864 44423345789999999999999999999999 5 555567788876542 22 26999


Q ss_pred             EEecccc-C--C--hh-----h------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALA-G--N--EE-----E------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALV-g--m--~e-----d------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |.++|-- |  +  .+     .            -.++|......++|||+||+-+
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            9998653 2  1  11     1            1356777788999999999866

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.56  E-value=0.02  Score=49.72  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCcceEEeccccCChhhH
Q 041205          143 MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEYDCIILAALAGNEEEK  219 (535)
Q Consensus       143 lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~FDvVfiaALVgm~edK  219 (535)
                      +|+.++.+|+.  -|++|+++|.+++..+.++++    | ...-+.....|..+...   ...++|+||-....      
T Consensus         2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~~----G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------   68 (130)
T PF00107_consen    2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKEL----G-ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------   68 (130)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT----T-ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------
T ss_pred             hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHhh----c-ccccccccccccccccccccccccceEEEEecCc------
Confidence            68899999994  459999999999998777654    4 11111111111111111   11369999976443      


Q ss_pred             HHHHHHHHhhcccCeEEEEEcccc
Q 041205          220 AKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       220 ~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ...++...+.++|||.+++-...+
T Consensus        69 ~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHHhccCCEEEEEEccC
Confidence            568999999999999999976543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PLN02494 adenosylhomocysteinase

Probab=94.53  E-value=0.091  Score=58.03  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             chhhHHhHHHHHHHHHHhhCC-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENTGV-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~~l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|-.-+-+.-++.+.+...+ ..+++|+-+|+|++|......++  ..|++|+.+|+|+.....|.    ..| +    
T Consensus       230 fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~----~~G-~----  298 (477)
T PLN02494        230 FDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQAL----MEG-Y----  298 (477)
T ss_pred             hhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHH----hcC-C----
Confidence            344333333335666655432 57899999999999999888888  35899999999987644443    345 2    


Q ss_pred             EEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.  +..++   +...|+|+....     .+.-+.....+.||+||+|+.-.
T Consensus       299 ~vv--~leEa---l~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        299 QVL--TLEDV---VSEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             eec--cHHHH---HhhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcC
Confidence            111  22222   245899987422     23334477788999999998753

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.52  E-value=0.13  Score=53.34  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             HHHHhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          122 ALIENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      .+.....+.++++||-.| +|..|..++.||++  .|++++++--+++-.+.    ++++| -..-|.+...|..+....
T Consensus       133 ~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~----~~~lG-Ad~vi~y~~~~~~~~v~~  205 (326)
T COG0604         133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLEL----LKELG-ADHVINYREEDFVEQVRE  205 (326)
T ss_pred             HHHHhcCCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHH----HHhcC-CCEEEcCCcccHHHHHHH
Confidence            333345578899999999 88899999999994  45466666666644444    44556 223345555554433222


Q ss_pred             C---CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 L---GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L---~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +   ..+|+||-  .+|     ...+....+.|++||++++-..
T Consensus       206 ~t~g~gvDvv~D--~vG-----~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         206 LTGGKGVDVVLD--TVG-----GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             HcCCCCceEEEE--CCC-----HHHHHHHHHHhccCCEEEEEec
Confidence            2   25999986  344     4566667888999999988554

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=94.48  E-value=0.23  Score=50.57  Aligned_cols=97  Identities=16%  Similarity=0.173  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-------ccccccCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-------IMEVKEKL  201 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-------A~el~~dL  201 (535)
                      .++++||-.|+|++|..++.+|+.  .|. +|++++.+++..+.++    .+| ...-+.....+       +.+.. +.
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~~~-~~  247 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRDIT-GG  247 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHHHh-CC
Confidence            478999999999999999999994  577 9999999988776654    455 31111111111       11111 12


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+||-...-      ...+....+.|+++|+++.-.
T Consensus       248 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         248 RGADVVIEASGH------PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCcEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence            359998864221      346778888999999998754

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=94.46  E-value=0.16  Score=53.62  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccc-cc--c
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIME-VK--E  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~e-l~--~  199 (535)
                      ..+.++++||-.|+|++|..++.+|+.  .|++ |+.+|.+++..++|++    +| . +  .+...   +..+ +.  .
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~----~G-a-~--~v~~~~~~~~~~~v~~~~  250 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARS----FG-C-E--TVDLSKDATLPEQIEQIL  250 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHH----cC-C-e--EEecCCcccHHHHHHHHc
Confidence            345789999999999999999999993  4665 6667899888887775    46 2 2  12211   1111 11  1


Q ss_pred             CCCCcceEEeccccC--------ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAG--------NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVg--------m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+||-.....        +..+....+++..+.+++||.+++-.
T Consensus       251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            123599998643321        12234568899999999999998853

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.45  E-value=0.18  Score=51.75  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHH--H--hhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRI--V--SSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i--~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +||+.||+|++|.. +..|++   .|..|+-++..++.++.-++.  +  ...|   ....+. .... .......||+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g---~~~~~~-~~~~-~~~~~~~~D~v   74 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQAGGLTLVEQG---QASLYA-IPAE-TADAAEPIHRL   74 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhcCCeEEeeCC---cceeec-cCCC-CcccccccCEE
Confidence            68999999998764 445555   578899999987655433321  1  1112   112211 1111 11233579999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+. .+.  .+-..++..+.+.+.|++.++.
T Consensus        75 iv~-vK~--~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         75 LLA-CKA--YDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEE-CCH--HhHHHHHHHHHhhCCCCCEEEE
Confidence            995 664  3556788999999999886654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.43  E-value=0.21  Score=50.39  Aligned_cols=102  Identities=13%  Similarity=0.047  Sum_probs=68.2

Q ss_pred             hhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccC--C
Q 041205          126 NTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEK--L  201 (535)
Q Consensus       126 ~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~d--L  201 (535)
                      ...+.++++||-.|. |++|..++.+|+.  .|++|++++.+++..+.+++.   +| ...-+..... |..+....  .
T Consensus       146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~---lG-a~~vi~~~~~~~~~~~i~~~~~  219 (338)
T cd08295         146 VCKPKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK---LG-FDDAFNYKEEPDLDAALKRYFP  219 (338)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh---cC-CceeEEcCCcccHHHHHHHhCC
Confidence            345688999999996 8999999999994  689999999998876666542   45 2211221111 21111111  1


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+||-  .+|   .  ..+....+.|++||.++.-.
T Consensus       220 ~gvd~v~d--~~g---~--~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         220 NGIDIYFD--NVG---G--KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             CCcEEEEE--CCC---H--HHHHHHHHHhccCcEEEEec
Confidence            46999884  233   1  45788889999999998653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.40  E-value=0.02  Score=53.63  Aligned_cols=100  Identities=16%  Similarity=0.083  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc----------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD----------------  193 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD----------------  193 (535)
                      .+|.+|+.+|.|..|..|..++..  -|++|+.+|..++..+....+...      .+.....+                
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERPERLRQLESLGAY------FIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSHHHHHHHHHTTTE------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCHHHHHhhhcccCc------eEEEcccccccccccchhhhhHHH
Confidence            578999999999999999999995  589999999999887765543221      12221000                


Q ss_pred             ---ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          194 ---IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       194 ---A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                         -..+......+|+|+..++..-...+.-+-++..+.|+||.+++
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv  136 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV  136 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence               00111122457888876665212233334456667788766554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK10083 putative oxidoreductase; Provisional

Probab=94.33  E-value=0.28  Score=49.19  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~F  204 (535)
                      ..+.++++|+-.|+|++|..++.+|+. ..|+ .|+++|.+++..+.++++    | ...-+.....+..+..... .++
T Consensus       156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~~----G-a~~~i~~~~~~~~~~~~~~g~~~  229 (339)
T PRK10083        156 TGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKES----G-ADWVINNAQEPLGEALEEKGIKP  229 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHh----C-CcEEecCccccHHHHHhcCCCCC
Confidence            456789999999999999999999983 2366 588999999888777653    4 2111121111211111111 124


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+||-...      ....+....+.|++||+++.-..
T Consensus       230 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        230 TLIIDAAC------HPSILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             CEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence            56654322      13467888899999999987543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.30  E-value=0.33  Score=49.60  Aligned_cols=96  Identities=18%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC--------CCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE--------KRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls--------~rI~Fi~GDA~e  196 (535)
                      ++|..||+|.+|.+- ..+++   .|.+|+.+|.+++.++.++..++       ..|.+.        .++++. .|..+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~~   78 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLAD   78 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHHH
Confidence            489999999888663 33444   57899999999999888765322       233110        123332 23222


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEE
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvL  236 (535)
                         ...+.|+|+.+..-. ..-|..++..+.+..+++.++
T Consensus        79 ---a~~~ad~Vi~avpe~-~~~k~~~~~~l~~~~~~~~ii  114 (308)
T PRK06129         79 ---AVADADYVQESAPEN-LELKRALFAELDALAPPHAIL  114 (308)
T ss_pred             ---hhCCCCEEEECCcCC-HHHHHHHHHHHHHhCCCcceE
Confidence               235689999863321 235888888887766555444

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.26  E-value=0.17  Score=51.74  Aligned_cols=96  Identities=8%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c----CCCeEEEEcc--ccccccCCCCcc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I----EKRMKFLTCD--IMEVKEKLGEYD  205 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L----s~rI~Fi~GD--A~el~~dL~~FD  205 (535)
                      ++|..||+|.+|.+--....  ..|.+|+.+|.++.. +.    ++..|. +    .....+....  ..........+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~--~~G~~V~~~~r~~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   75 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLA--AAGADVTLIGRARIG-DE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATAD   75 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHH--hcCCcEEEEecHHHH-HH----HHhcCceeecCCCcceecccceeEeccChhhccCCC
Confidence            58999999998865444333  257889999997532 22    222331 0    0011110000  001112335799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +||+.- ..  .+...+++.+.+.+++|.+++.
T Consensus        76 ~vil~v-k~--~~~~~~~~~l~~~~~~~~iii~  105 (341)
T PRK08229         76 LVLVTV-KS--AATADAAAALAGHARPGAVVVS  105 (341)
T ss_pred             EEEEEe-cC--cchHHHHHHHHhhCCCCCEEEE
Confidence            999863 32  4667889999999988876654

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.23  E-value=0.2  Score=50.16  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|..||+|.+|.+-...........+|+++|.+++..+.++    ..| ..+.    ..+..++    ...|+||++--
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g-~~~~----~~~~~~~----~~aD~Vilavp   67 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELG-LVDE----IVSFEEL----KKCDVIFLAIP   67 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCC-CCcc----cCCHHHH----hcCCEEEEeCc
Confidence            479999999888764332221111247999999999877654    355 2111    1222221    23899999744


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEE
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      .   ..-..++.++.+ ++||.+|+
T Consensus        68 ~---~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         68 V---DAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             H---HHHHHHHHHHhc-cCCCCEEE
Confidence            4   456778888888 88887554

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.22  E-value=0.047  Score=60.11  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-------CCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-------KLG  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-------dL~  202 (535)
                      ..+.++|-||-|.+++++.....  +|..++|+|++||++++.|++.+.-.-  +++..++-.|+.+...       +..
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~  369 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI  369 (482)
T ss_pred             cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence            34567778887777888877644  789999999999999999999987654  2466777777764332       223


Q ss_pred             CcceEEeccc----cCC-hhhH----HHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAAL----AGN-EEEK----AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaAL----Vgm-~edK----~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+++++-.    .|| .++.    ..+|..+...+.|-|++++.-
T Consensus       370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            5999997622    355 3332    356777888999999998854

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=94.19  E-value=0.26  Score=49.57  Aligned_cols=100  Identities=21%  Similarity=0.290  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc----cccccCCC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI----MEVKEKLG  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA----~el~~dL~  202 (535)
                      .+.++.+||-.|+|++|..++.+|+.  .| .+|+++|.+++..+.+++    .| ...-+.....+.    .++. ...
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~-~~~  234 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQL--YSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELT-DGR  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHh-CCC
Confidence            45788999999999999999999993  56 789999999988776664    45 322222222221    1111 223


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+|+|+-..  +   . ...+..+.+.|+++|.++.-..
T Consensus       235 ~~d~vld~~--g---~-~~~~~~~~~~l~~~g~~v~~g~  267 (345)
T cd08286         235 GVDVVIEAV--G---I-PATFELCQELVAPGGHIANVGV  267 (345)
T ss_pred             CCCEEEECC--C---C-HHHHHHHHHhccCCcEEEEecc
Confidence            599988542  2   1 2257888899999999986543

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.14  E-value=0.33  Score=48.32  Aligned_cols=94  Identities=15%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+.++.+||-.|+|++|..++.+|++  .|.+|++++.+++..+.++    ..| ..   .++..+.  .  ...++|+
T Consensus       163 ~~~~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~--~--~~~~vD~  228 (329)
T cd08298         163 AGLKPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELAR----ELG-AD---WAGDSDD--L--PPEPLDA  228 (329)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHH----HhC-Cc---EEeccCc--c--CCCcccE
Confidence            456788999999999999999999984  6799999999987665553    456 21   1111111  1  1235898


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+..+..      ...+..+.+.|++||.++.-.
T Consensus       229 vi~~~~~------~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         229 AIIFAPV------GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEEcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence            8864333      247888999999999998743

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=94.08  E-value=0.23  Score=57.36  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=72.7

Q ss_pred             CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEcccc
Q 041205          132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIM  195 (535)
Q Consensus       132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~  195 (535)
                      -++|.-||+|.+|-. +.++|.   .|..|+-+|.++++++.+.+.+++.       |.+.        .+|++. .|. 
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-  409 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-  409 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-
Confidence            368999999998876 444545   6899999999999999987765531       2111        345443 222 


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                         ..+.+.|+|+=+ .....+-|.+++.++-++++|+++|...+.
T Consensus       410 ---~~~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS  451 (737)
T TIGR02441       410 ---SGFKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTS  451 (737)
T ss_pred             ---HHhccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence               234678988854 333357899999999999999999988764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.04  E-value=0.45  Score=51.50  Aligned_cols=100  Identities=18%  Similarity=0.244  Sum_probs=62.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-----------hcCCcCCCeEEEEccccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS-----------SDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-----------~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      .++++|.+||.|-+|++.-....   .+-+|+|+|+|++.++.-++-..           ..|    +..|. .+. +  
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~-~--   72 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI-E--   72 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH-H--
Confidence            46799999999988887544322   35799999999999887652111           111    22231 221 1  


Q ss_pred             cCCCCcceEEeccccCC----hhhHHH---HHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGN----EEEKAK---ILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm----~edK~~---VL~eL~rvLKPGGvLVvRsa  241 (535)
                       .....|+||+.---..    .++-..   ..+.+.+.+++|.++|..+.
T Consensus        73 -~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST  121 (425)
T PRK15182         73 -KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST  121 (425)
T ss_pred             -HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence             2346899997532211    122233   34678899999999999884

>PLN02256 arogenate dehydrogenase

Probab=94.04  E-value=0.27  Score=50.98  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=61.3

Q ss_pred             hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          112 YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       112 Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      |+.-.+.|...       ...++|..||+|-+|.+-.....  ..|.+|+++|.++. .    ......| .    .+ .
T Consensus        23 ~~~~~~~~~~~-------~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~g-v----~~-~   82 (304)
T PLN02256         23 YESRLQEELEK-------SRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELG-V----SF-F   82 (304)
T ss_pred             hHhHHhHhhcc-------CCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcC-C----ee-e
Confidence            45445555443       46789999999987776433333  24678999999963 2    2333456 2    22 2


Q ss_pred             ccccccccCCCCcceEEeccccCChhhHHHHHHHH-HhhcccCeEE
Q 041205          192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHI-RKYMKEGGVL  236 (535)
Q Consensus       192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL-~rvLKPGGvL  236 (535)
                      .|..++..  ...|+|+++.-.   ..-..++.++ ...++||++|
T Consensus        83 ~~~~e~~~--~~aDvVilavp~---~~~~~vl~~l~~~~l~~~~iv  123 (304)
T PLN02256         83 RDPDDFCE--EHPDVVLLCTSI---LSTEAVLRSLPLQRLKRSTLF  123 (304)
T ss_pred             CCHHHHhh--CCCCEEEEecCH---HHHHHHHHhhhhhccCCCCEE
Confidence            33332211  357999996544   3557777877 5668888754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.02  E-value=0.12  Score=56.94  Aligned_cols=101  Identities=16%  Similarity=0.255  Sum_probs=70.1

Q ss_pred             CCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccc
Q 041205          131 QLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDI  194 (535)
Q Consensus       131 ~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA  194 (535)
                      +-++|..||.|.+|.. +..+|.   .|..|+.+|++++.++.+.+.+++       .|.+        -.++++. .|.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   81 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL   81 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence            4578999999998854 334444   588999999999999998665542       1211        0235543 232


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                          .+..+.|+|+-+ .....+-|..+|.++.+.++||.+|++.+
T Consensus        82 ----~~~~~aDlViEa-v~E~~~vK~~vf~~l~~~~~~~ailasnt  122 (507)
T PRK08268         82 ----ADLADCDLVVEA-IVERLDVKQALFAQLEAIVSPDCILATNT  122 (507)
T ss_pred             ----HHhCCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence                234578999975 33335679999999999999998887654

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=93.93  E-value=0.23  Score=50.66  Aligned_cols=89  Identities=15%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+-. .|++   .|.+|+++|++++.++...+    .| ..   .  ..+..++...+...|+||+.-
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g-~~---~--~~s~~~~~~~~~~~dvIi~~v   67 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DR-TT---G--VANLRELSQRLSAPRVVWVMV   67 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cC-Cc---c--cCCHHHHHhhcCCCCEEEEEc
Confidence            4799999998876532 2333   57899999999988766553    34 10   0  123333333334579999852


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      -.   ..-..+++++...+++|.+++
T Consensus        68 p~---~~~~~v~~~l~~~l~~g~ivi   90 (298)
T TIGR00872        68 PH---GIVDAVLEELAPTLEKGDIVI   90 (298)
T ss_pred             Cc---hHHHHHHHHHHhhCCCCCEEE
Confidence            22   245677888888898886554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.88  E-value=0.3  Score=49.16  Aligned_cols=98  Identities=14%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCC--cCCCeEEEEccccccccCCCCcceE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDE--IEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~--Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ++|.+||+|.+|..-.....  ..|..|+.+|.+++.++..++.-..   .+.  +..++.+ ..|..+   ...+.|+|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~v   75 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA--RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLI   75 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEE
Confidence            48999999988766433222  2577899999999887655442100   000  0012222 122211   22468999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+. ...  .....++..+.+.++||.+++.-
T Consensus        76 i~~-v~~--~~~~~v~~~l~~~~~~~~~vi~~  104 (325)
T PRK00094         76 LVA-VPS--QALREVLKQLKPLLPPDAPIVWA  104 (325)
T ss_pred             EEe-CCH--HHHHHHHHHHHhhcCCCCEEEEE
Confidence            985 332  46778888888888888776654

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=93.87  E-value=0.32  Score=50.10  Aligned_cols=99  Identities=19%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cc----ccccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DI----MEVKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA----~el~~  199 (535)
                      ..+.++.+||-.|+|++|..++.+|+.  .|+ .|++++.+++..+.+++    +| ...-+.....  +.    .++. 
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~-  250 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKA--AGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMT-  250 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHh-
Confidence            456788999999999999999999994  466 58999999988777754    44 2111211111  11    1111 


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcc-cCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMK-EGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLK-PGGvLVvRs  240 (535)
                      . +.+|+|+-.  +|    ....+....+.|+ +||+++.-.
T Consensus       251 ~-~~~d~vid~--~g----~~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         251 D-GGVDYAFEV--IG----SADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             C-CCCcEEEEC--CC----CHHHHHHHHHHhccCCCEEEEEe
Confidence            2 469999853  22    1346777888999 999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.85  E-value=0.23  Score=51.17  Aligned_cols=92  Identities=18%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      -++|..||.|-+|.+-....+..-...+|+|+|.+.+..+.|..    +| +.+.    ..+.. ........|+|+++-
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence            46899999999988866665643445667888888777766653    34 2111    11110 012335689999986


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvL  236 (535)
                      -+   ..-.++++++.+.|+||.+|
T Consensus        73 Pi---~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          73 PI---EATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             cH---HHHHHHHHHhcccCCCCCEE
Confidence            66   67889999999999998766

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.82  E-value=0.43  Score=51.30  Aligned_cols=94  Identities=17%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHH------------HHh---hcCCcCCCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARR------------IVS---SDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~---~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ++|..||.|-+|.+.- .|++   .|-+|+++|+|++.++.-++            ++.   ..|    +..+.      
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence            6899999998877643 3445   57899999999999885221            000   111    12221      


Q ss_pred             cccCCCCcceEEeccccC------C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAG------N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVg------m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        .+....|+||+.--..      . ...-..+++.+.+.+++|.+++..+.
T Consensus        71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              1223579999864431      0 13445667889999999999988874

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.81  E-value=0.41  Score=47.51  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+.++.+||-.|+|++|..++.+|+.  .|.+|++++.+++..+.+++    .| ....+.+     .+. .....||+
T Consensus       151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~~~~-----~~~-~~~~~~d~  217 (319)
T cd08242         151 VPITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARR----LG-VETVLPD-----EAE-SEGGGFDV  217 (319)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-CcEEeCc-----ccc-ccCCCCCE
Confidence            345788999999999999999999984  68899999999988877775    45 3211111     111 12246999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+-..  |    -...+....+.++++|.++.
T Consensus       218 vid~~--g----~~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         218 VVEAT--G----SPSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             EEECC--C----ChHHHHHHHHHhhcCCEEEE
Confidence            98642  2    13467778889999999987

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.74  E-value=0.23  Score=54.88  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc-CCCcEEE------EEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH-MKSTHFD------NIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~Vt------GIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      -.+++|+-||||..|-   ..|..+ -.|..|+      +||.+...-+.|.    ..| +    .  .++..++   ..
T Consensus        34 LkgKtIaIIGyGSqG~---AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~dG-F----~--v~~~~Ea---~~   96 (487)
T PRK05225         34 LKGKKIVIVGCGAQGL---NQGLNMRDSGLDISYALRKEAIAEKRASWRKAT----ENG-F----K--VGTYEEL---IP   96 (487)
T ss_pred             hCCCEEEEEccCHHHH---HHhCCCccccceeEEeccccccccccchHHHHH----hcC-C----c--cCCHHHH---HH
Confidence            4579999999998877   222211 2355566      5566666655543    346 3    1  2343333   34


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..|+|++..--   .....+.+++.+.||||..|.+  .||
T Consensus        97 ~ADvVviLlPD---t~q~~v~~~i~p~LK~Ga~L~f--sHG  132 (487)
T PRK05225         97 QADLVINLTPD---KQHSDVVRAVQPLMKQGAALGY--SHG  132 (487)
T ss_pred             hCCEEEEcCCh---HHHHHHHHHHHhhCCCCCEEEe--cCC
Confidence            68999974322   2467777999999999999988  465

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=93.69  E-value=0.55  Score=46.75  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+||-+|+|.+|..++.+|+.  .|.+|++++.+++..+.+++    .| ...-+.....+....  ..+.+|+|
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~--~~~~~d~v  229 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARK----LG-ADEVVDSGAELDEQA--AAGGADVI  229 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----hC-CcEEeccCCcchHHh--ccCCCCEE
Confidence            45788999999999999999999884  58899999999988776644    34 111111111111100  11469988


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +-. ..     ....+..+.+.|+++|.++.-.
T Consensus       230 i~~-~~-----~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         230 LVT-VV-----SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEC-CC-----cHHHHHHHHHhcccCCEEEEEC
Confidence            853 22     1346788889999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.68  E-value=0.039  Score=59.35  Aligned_cols=100  Identities=24%  Similarity=0.322  Sum_probs=60.5

Q ss_pred             EEEEEccCCChhhHHH---HHhh-cCCCcEEEEEeCChhHHHHHHHHHhhcC-CcCCCeEEE-EccccccccCCCCcceE
Q 041205          134 KVAFVGSGPMPLTSII---LASQ-HMKSTHFDNIDIDETANNLARRIVSSDD-EIEKRMKFL-TCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       134 RVLeIGSGplPlTAI~---LAk~-~l~Ga~VtGIDIDpeAIelAR~li~~lG-~Ls~rI~Fi-~GDA~el~~dL~~FDvV  207 (535)
                      +|..||.|.+|+|.-.   ++.. ...|.+|+-+|+|++.++.....+++.- ......++. +.|..   ..+.+.|+|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~---eal~~AD~V   78 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRR---EALDGADFV   78 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHH---HHhcCCCEE
Confidence            7999999998888444   4422 3567899999999998887766544320 011223443 44532   234678999


Q ss_pred             EeccccCC---------hhhHHHHHHHHHhhcccCeEE
Q 041205          208 ILAALAGN---------EEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       208 fiaALVgm---------~edK~~VL~eL~rvLKPGGvL  236 (535)
                      +.+..++-         .+-|..++.++-+.+.|||++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~  116 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF  116 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence            98877532         233444454444455555543

linked to 3D####ucture

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.59  E-value=0.57  Score=50.18  Aligned_cols=101  Identities=17%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCcC-----CCeEEEE-ccccccccCCCC
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEIE-----KRMKFLT-CDIMEVKEKLGE  203 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~Ls-----~rI~Fi~-GDA~el~~dL~~  203 (535)
                      ++|..||.|-+|++.-.+..   .|-.|+++|+|++.++..++-...   -| +.     .+.+|.. .|..+   ...+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~-l~~~l~~~~~~l~~t~~~~~---~~~~   73 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKE-IQQFLQSDKIHFNATLDKNE---AYRD   73 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcC-HHHHHHhCCCcEEEecchhh---hhcC
Confidence            47999999988876554433   267899999999999988762111   01 00     1122221 11111   1245


Q ss_pred             cceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .|+||+.-.-..        ...-..+++.+.+ ++||.+++..+.
T Consensus        74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST  118 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST  118 (388)
T ss_pred             CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee
Confidence            799987522111        1233566777877 799998888874

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.58  E-value=0.25  Score=49.46  Aligned_cols=100  Identities=22%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCCC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLGE  203 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~~  203 (535)
                      .+.++.+||-.|+|++|..++.+|+.  .|. .|++++.+++..+.++++    | ...-+.....+..+ +.  ....+
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~i~~~~~~~~  236 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKEA----G-ATDIINPKNGDIVEQILELTGGRG  236 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHh----C-CcEEEcCCcchHHHHHHHHcCCCC
Confidence            45678999999999999999999994  464 899999998887776653    3 11111111111111 11  11245


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+||-.  ++    -...+....+.|+++|+++.-.
T Consensus       237 ~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         237 VDCVIEA--VG----FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CcEEEEc--cC----CHHHHHHHHHHhhcCCEEEEEc
Confidence            9988853  22    1247888889999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.56  E-value=0.54  Score=49.70  Aligned_cols=95  Identities=18%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf  208 (535)
                      ++|+.+|+|.+|........  ..|..|+.+|.|++.++.+++   ..|     +.++.||+.+..    .....+|.|+
T Consensus         1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~~-----~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RLD-----VRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hcC-----EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            58999999988777655433  257899999999998776553   234     578889986421    1245799888


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...-   .+...++....+.+.|...++++.
T Consensus        71 ~~~~~---~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         71 AVTDS---DETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             EecCC---hHHHHHHHHHHHHhcCCCeEEEEE
Confidence            75332   344555666677776776666664

>PRK15076 alpha-galactosidase; Provisional

Probab=93.44  E-value=0.093  Score=56.90  Aligned_cols=79  Identities=24%  Similarity=0.316  Sum_probs=52.8

Q ss_pred             CEEEEEccCCChhhHHHH---H-hhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEE-EccccccccCCCCcce
Q 041205          133 KKVAFVGSGPMPLTSIIL---A-SQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFL-TCDIMEVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L---A-k~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi-~GDA~el~~dL~~FDv  206 (535)
                      .+|..||+|.+|+|.-++   + ...+++.+|+-+|+|++..+.+..++++.-. ....+++. ++|..   ..+.+.|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf   78 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY   78 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence            489999999888775442   2 1125677999999999999876666554210 11235555 45532   33467899


Q ss_pred             EEeccccC
Q 041205          207 IILAALAG  214 (535)
Q Consensus       207 VfiaALVg  214 (535)
                      |+..+.+|
T Consensus        79 Vv~ti~vg   86 (431)
T PRK15076         79 VINAIQVG   86 (431)
T ss_pred             EeEeeeeC
Confidence            99988886

>PLN02688 pyrroline-5-carboxylate reductase

Probab=93.41  E-value=0.38  Score=47.53  Aligned_cols=90  Identities=21%  Similarity=0.314  Sum_probs=56.1

Q ss_pred             CEEEEEccCCChhhHHH-HHhh-cCCCcEEEEE-eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSII-LASQ-HMKSTHFDNI-DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~-~l~Ga~VtGI-DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|.+||+|.+|.+-.. |.+. +.+...|+.+ |.+++..+.+    ...| .    .. ..+..++   ....|+||+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~g-~----~~-~~~~~e~---~~~aDvVil   67 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF----QSLG-V----KT-AASNTEV---VKSSDVIIL   67 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHcC-C----EE-eCChHHH---HhcCCEEEE
Confidence            57999999988765322 2221 1122378888 9998876443    2346 2    22 2232222   235799998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .- ..  .....++..+...++||.+++.
T Consensus        68 ~v-~~--~~~~~vl~~l~~~~~~~~~iIs   93 (266)
T PLN02688         68 AV-KP--QVVKDVLTELRPLLSKDKLLVS   93 (266)
T ss_pred             EE-Cc--HHHHHHHHHHHhhcCCCCEEEE
Confidence            64 32  5678888888888888877664

>PHA01634 hypothetical protein

Probab=93.40  E-value=0.42  Score=45.29  Aligned_cols=74  Identities=8%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      -.+++|++||.+ +|-|||+++-   .| -.|++++.++...++.+++++-.....+.+.  .   .+++...++||+..
T Consensus        27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~--~---~eW~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM--K---GEWNGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhheeeeceee--c---ccccccCCCcceEE
Confidence            468999999997 8999999976   45 4799999999999999998765431111111  1   13555667899988


Q ss_pred             eccc
Q 041205          209 LAAL  212 (535)
Q Consensus       209 iaAL  212 (535)
                      ++.-
T Consensus        98 iDCe  101 (156)
T PHA01634         98 MDCE  101 (156)
T ss_pred             EEcc
Confidence            8854

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.38  E-value=0.33  Score=52.65  Aligned_cols=89  Identities=13%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|+.|| +|.+|.+......  ..|..|+++|.+++..   .+.....| .    .+ ..|..   ......|+|+++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~g-v----~~-~~~~~---e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELG-V----EY-ANDNI---DAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcC-C----ee-ccCHH---HHhccCCEEEEec
Confidence            4799997 7887776544443  2567899999998764   22333445 2    22 22222   2235689999975


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -.   ..-..++..+.+.++||.+|+-
T Consensus        67 p~---~~~~~vl~~l~~~l~~~~iViD   90 (437)
T PRK08655         67 PI---NVTEDVIKEVAPHVKEGSLLMD   90 (437)
T ss_pred             CH---HHHHHHHHHHHhhCCCCCEEEE
Confidence            54   3557888999999999886654

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=93.27  E-value=0.4  Score=48.43  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc----cccccc--
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD----IMEVKE--  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD----A~el~~--  199 (535)
                      ..+.++.+||-.|+|++|..++.+|+.  .|.+ |+.++.+++..+.++++    | ...-+....-+    ..++..  
T Consensus       158 ~~~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         158 AGVRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKEL----G-ATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHc----C-CcEEeccccccchhHHHHHHHHh
Confidence            456789999999999999999999994  5776 99999998887766553    4 21111111111    111111  


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....||+|+-...-      ...+....+.|+++|.++.-.
T Consensus       231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            11349999864222      236788899999999988643

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.26  E-value=0.35  Score=52.10  Aligned_cols=102  Identities=21%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfia  210 (535)
                      +.+|+|-=|| .|+=+|.+|.. .+..+|+-=|++|+++++.+++++... . .+...+..|+..+.... ..||+|=+|
T Consensus        53 ~~~v~Dalsa-tGiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSA-TGIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeecccc-cchhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecchHHHHHHhcCCCccEEecC
Confidence            8999999998 58999999884 333489999999999999999999873 1 35556668987776654 459999888


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       -.|   ....+++...+-++.||+|.+--.
T Consensus       129 -PFG---SPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         129 -PFG---SPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             -CCC---CCchHHHHHHHHhhcCCEEEEEec
Confidence             444   578899999999999999988553

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=93.22  E-value=0.31  Score=49.17  Aligned_cols=99  Identities=20%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-c--ccCCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-V--KEKLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l--~~dL~~F  204 (535)
                      ..++.+|+-.|+|++|..++.+|+.  .|.+ |++++.+++..+.++++    | ...-+.....+..+ +  .....+|
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~l~~~~~~~~~  231 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKKM----G-ATYVVNPFKEDVVKEVADLTDGEGV  231 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHh----C-CcEEEcccccCHHHHHHHhcCCCCC
Confidence            4678999999999999999999994  5776 88998888777766543    5 21111111122111 1  1122359


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-...-      ...+..+.+.|+++|.++.-.
T Consensus       232 d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       232 DVFLEMSGA------PKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CEEEECCCC------HHHHHHHHHhhcCCCEEEEEc
Confidence            999864221      345788889999999988754

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.21  E-value=0.35  Score=46.87  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          112 YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       112 Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      |++-+-+..+....++...+.-+.+|+|||- |-  |.+|- +.-| -.-+|+|++|=.+..+|-..-+.| .+++..|.
T Consensus        53 YVpAtteQv~nVLSll~~n~~GklvDlGSGD-GR--iVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~  127 (199)
T KOG4058|consen   53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGD-GR--IVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFR  127 (199)
T ss_pred             ccCccHHHHHHHHHHccCCCCCcEEeccCCC-ce--eehhh-hhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhh
Confidence            4666655555555556557778999999995 33  33333 1123 456899999999999998888889 88999999


Q ss_pred             EccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          191 TCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       191 ~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .-|.-  ..++.+|..|.+...-.|   ...+-..+..-|+.|..++.
T Consensus       128 Rkdlw--K~dl~dy~~vviFgaes~---m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  128 RKDLW--KVDLRDYRNVVIFGAESV---MPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             hhhhh--hccccccceEEEeehHHH---HhhhHHHHHhhCcCCCeEEE
Confidence            99984  456777765555422211   22333445556777776654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.20  E-value=0.54  Score=53.18  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=69.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvV  207 (535)
                      ..+|+-+|+|.+|........  ..|..++.||.|++.++.+++    .|     ...+.||+.+..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            479999999998887654433  257789999999999998875    35     367889998632    234568988


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-   .+....+-...|.+.|+..+++|..
T Consensus       469 vv~~~d---~~~n~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        469 INAIDD---PQTSLQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             EEEeCC---HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            875332   3455555566777889988888875

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=93.19  E-value=0.27  Score=50.66  Aligned_cols=100  Identities=15%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc-CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE-KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~-dL~~F  204 (535)
                      .+.++++||-.|+|++|..++.+|+.  .|. .|+++|.+++..+.+++    .| ...-+.....+..+ +.. ...+|
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~--~G~~~v~~~~~~~~k~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~  255 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKI--AGCTTIIAVDIVDSRLELAKE----LG-ATHVINPKEEDLVAAIREITGGGV  255 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CcEEecCCCcCHHHHHHHHhCCCC
Confidence            45778999999999999999999994  567 69999999988776654    34 21001110111111 110 12359


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-...-      ...+....+.++++|.++.-.
T Consensus       256 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         256 DYALDTTGV------PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             cEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence            998864322      246788899999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=93.16  E-value=0.34  Score=53.59  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             chhhHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      ++|-.-+...-...+.+.. ..-.+++|+-||+|.+|......++  ..|++|+.+|+|+.....|..    .| .    
T Consensus       230 aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G-~----  298 (476)
T PTZ00075        230 FDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EG-Y----  298 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cC-c----
Confidence            3443333333333433322 2357899999999999988877777  368999999999876544332    35 2    


Q ss_pred             EEEEccccccccCCCCcceEEeccccCChhhHHHHH-HHHHhhcccCeEEEEE
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKIL-GHIRKYMKEGGVLLVR  239 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL-~eL~rvLKPGGvLVvR  239 (535)
                      ++  .+..++   +...|+|+....      ...++ .+....||||++|+--
T Consensus       299 ~~--~~leel---l~~ADIVI~atG------t~~iI~~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        299 QV--VTLEDV---VETADIFVTATG------NKDIITLEHMRRMKNNAIVGNI  340 (476)
T ss_pred             ee--ccHHHH---HhcCCEEEECCC------cccccCHHHHhccCCCcEEEEc
Confidence            22  122222   356899998632      23355 3677789999998663

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.14  E-value=0.62  Score=51.34  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHH---HhhcCC-------cCCCeEEEEccccccccCC
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRI---VSSDDE-------IEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~l---i~~lG~-------Ls~rI~Fi~GDA~el~~dL  201 (535)
                      ++|.-||+|-+|++. .+||. .-.|..|+|+|+|++.++.-++-   +..-|+       .+.+.+|. .|..   ...
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence            689999999988764 45555 23468899999999998874432   111120       01234342 2221   123


Q ss_pred             CCcceEEecccc-----------CC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALA-----------GN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALV-----------gm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...|+||+.--.           .. ...-..+.+.+.+++++|.++++++.
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            457999875211           11 23457888889999999999999884

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=93.14  E-value=0.63  Score=49.54  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|..||.|.+|..-...++  -.|.+|++.|......    ..+...| +    ++  .+..++   ....|+|++
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~--d~G~~ViV~~r~~~s~----~~A~~~G-~----~v--~sl~Ea---ak~ADVV~l   77 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLR--DSGVEVVVGVRPGKSF----EVAKADG-F----EV--MSVSEA---VRTAQVVQM   77 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHH--HCcCEEEEEECcchhh----HHHHHcC-C----EE--CCHHHH---HhcCCEEEE
Confidence            45899999999998876544444  3688999988554333    3344456 2    22  243332   245799998


Q ss_pred             ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205          210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..-.  ... ..++ ..+...|+||.+|++  +||
T Consensus        78 lLPd--~~t-~~V~~~eil~~MK~GaiL~f--~hg  107 (335)
T PRK13403         78 LLPD--EQQ-AHVYKAEVEENLREGQMLLF--SHG  107 (335)
T ss_pred             eCCC--hHH-HHHHHHHHHhcCCCCCEEEE--CCC
Confidence            5332  234 4555 579999999999888  564

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.03  E-value=0.37  Score=49.29  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++|+.||+|++|.+--. |++   .|..|+-+..++.  +.    +...|.    ......+....+...+.....||
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D   74 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCD   74 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCC
Confidence            4579999999998875333 333   5788888888763  21    223231    00111221111111122345799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +||++ .+.  .+-..++..+...++|++.++.
T Consensus        75 ~vila-vK~--~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         75 WVLVG-LKT--TANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             EEEEE-ecC--CChHhHHHHHhhhcCCCCEEEE
Confidence            99996 443  2346688888888999887654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.01  E-value=0.39  Score=55.32  Aligned_cols=102  Identities=21%  Similarity=0.234  Sum_probs=72.1

Q ss_pred             CCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCc--------CCCeEEEEccc
Q 041205          131 QLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEI--------EKRMKFLTCDI  194 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~L--------s~rI~Fi~GDA  194 (535)
                      +-++|.-||+|.+|-.--. +|.   .|..|+-+|.++++++.+++.+++.       |.+        -.+|++. .| 
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-  386 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSAS---KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS-  386 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC-
Confidence            3468999999998765433 334   6899999999999999887765421       211        1244442 12 


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        + ..+.+.|+|+=+ .....+-|.++|.++-++++|+++|...+.
T Consensus       387 --~-~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS  429 (714)
T TIGR02437       387 --Y-AGFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTS  429 (714)
T ss_pred             --H-HHhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence              1 234678999864 333357899999999999999999988764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.01  E-value=0.55  Score=49.98  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHH------------Hhh-cCCcCCCeEEEEccccccc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRI------------VSS-DDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~l------------i~~-lG~Ls~rI~Fi~GDA~el~  198 (535)
                      ++|..||+|.+|.+.-. |++   .|.+|+++|++++.++.-++-            +.+ ..  ..++++. .|..+  
T Consensus         1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~~--   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYED--   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHHH--
Confidence            47999999998876433 344   678999999999987653321            000 00  0124432 22221  


Q ss_pred             cCCCCcceEEeccccCC-------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIILAALAGN-------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm-------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       .....|+||+.-.-..       ...-..+++.+.+.+++|.+++..+
T Consensus        73 -~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        73 -AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             -HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence             1356899998633211       1135667788888999998888766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=92.97  E-value=0.43  Score=49.59  Aligned_cols=100  Identities=24%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---c----cccccc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---D----IMEVKE  199 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---D----A~el~~  199 (535)
                      .+.++.+||-.|+|++|..++.+|+.  .|+ +|++++.+++..+.+++    .| ...-+.....   +    +.++. 
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~~v~~~~-  271 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE----MG-ADYVFNPTKMRDCLSGEKVMEVT-  271 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcccccccccHHHHHHHhc-
Confidence            56788999999999999999999994  567 79999999886655554    45 3111111110   1    11111 


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...++|+|+-.  .|   .+...+.++.+.|+++|+++.-.
T Consensus       272 ~g~gvDvvld~--~g---~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         272 KGWGADIQVEA--AG---APPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCCCEEEEC--CC---CcHHHHHHHHHHHHcCCEEEEEC
Confidence            11359988743  33   34567888889999999998754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.89  E-value=0.4  Score=51.55  Aligned_cols=74  Identities=9%  Similarity=-0.049  Sum_probs=49.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+++|+.||.|..|+++..++.  ..|.+|+.+|.++. ......+.+++.|     |++..++..+   ....+|+|++
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv~   84 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVVT   84 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEEE
Confidence            4689999999998887665554  36889999996653 3222223344555     6777776433   2245899998


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      +..+.
T Consensus        85 s~Gi~   89 (480)
T PRK01438         85 SPGWR   89 (480)
T ss_pred             CCCcC
Confidence            86663

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=92.87  E-value=0.54  Score=47.91  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+- ..|++   .|.+|+.+|.+++.++...    ..| .    .. ..+..++.......|+|++.-
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g-~----~~-~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEG-A----TG-ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCC-C----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence            479999999887653 22333   5789999999998876543    345 2    21 233333332222358888753


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..+  +.-..++..+...+++|.+++--
T Consensus        68 ~~~--~~~~~v~~~l~~~l~~g~ivid~   93 (301)
T PRK09599         68 PAG--EITDATIDELAPLLSPGDIVIDG   93 (301)
T ss_pred             cCC--cHHHHHHHHHHhhCCCCCEEEeC
Confidence            221  24466778888889998766543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=92.85  E-value=0.77  Score=46.15  Aligned_cols=103  Identities=20%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcC-CC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-----CC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHM-KS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-----KL  201 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l-~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-----dL  201 (535)
                      .+|+-|.|+|+ ..|.|++++|.-+. -|  .+|+++|||-...+.+-.-       ..+|.|+.|+..+..-     .+
T Consensus        68 ~~P~lvIE~Gs-~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~  139 (237)
T COG3510          68 LQPSLVIEFGS-RHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRL  139 (237)
T ss_pred             cCCceeEeecc-ccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHH
Confidence            57999999999 58999999987432 24  7899999997665443221       1479999999865221     11


Q ss_pred             -CCcc--eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 -GEYD--CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 -~~FD--vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       +.|-  +|++++..+| +.--..++-+.+.|..|-.+++-+.
T Consensus       140 ~~~y~kIfvilDsdHs~-~hvLAel~~~~pllsaG~Y~vVeDs  181 (237)
T COG3510         140 KNEYPKIFVILDSDHSM-EHVLAELKLLAPLLSAGDYLVVEDS  181 (237)
T ss_pred             hcCCCcEEEEecCCchH-HHHHHHHHHhhhHhhcCceEEEecc
Confidence             2343  5567777755 5555666677889999999988763

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=92.82  E-value=0.97  Score=44.98  Aligned_cols=98  Identities=21%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc----ccCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV----KEKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el----~~dL  201 (535)
                      ..+.++.+||-+|+|.+|..++.+|+.  .|.+ |+.++.+++..+.+++    .| ..   .++..+-.+.    ....
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~~~~~~~~~~~~~~~~~  224 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKL--NGASRVTVAEPNEEKLELAKK----LG-AT---ETVDPSREDPEAQKEDNP  224 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-Ce---EEecCCCCCHHHHHHhcC
Confidence            456788999999999889999999994  5776 8999999888776643    45 21   2222111110    1122


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+|+|+-.  ++    ....+....+.|+++|.++.-.
T Consensus       225 ~~vd~v~~~--~~----~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         225 YGFDVVIEA--TG----VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CCCcEEEEC--CC----ChHHHHHHHHHHhcCCEEEEEe
Confidence            459999863  21    2457788889999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.82  E-value=1.2  Score=46.44  Aligned_cols=105  Identities=23%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +.+.+|.-||+|.+|.+..+.... .+- .+++-+|++++. -..+..+..... +..++.+..+|.    .++.+.|+|
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adiv   77 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLV   77 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEE
Confidence            567899999999999887775542 222 379999998875 466666665554 324566665553    235679999


Q ss_pred             Eecccc----CC-h----hhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          208 ILAALA----GN-E----EEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       208 fiaALV----gm-~----edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      ++.+.+    || .    ..-..++.++...+   .|+|.+++-+
T Consensus        78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            988776    33 1    12234444444333   3677766644

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.81  E-value=0.59  Score=47.80  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC-eEEEEccccccccCC--CCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR-MKFLTCDIMEVKEKL--GEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r-I~Fi~GDA~el~~dL--~~FDv  206 (535)
                      .+++.+||||+-++|+|-.++-+   ...+|.+||..-.-+...-+.       +.| +.+...|+..+..+.  +..|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~~~~~~d~  147 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPEDFTEKPDL  147 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHHcccCCCe
Confidence            67899999999999999877744   446899999986554433221       123 344455554433221  23678


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +++|-..   -.-..+|..+...++||+-++..-
T Consensus       148 ~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         148 IVIDVSF---ISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             EEEEeeh---hhHHHHHHHHHHhcCCCceEEEEe
Confidence            8877433   356889999999999998777643

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=92.80  E-value=0.29  Score=49.01  Aligned_cols=96  Identities=17%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             CCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcc
Q 041205          131 QLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FD  205 (535)
                      ++.+++-+  |+|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....+..+..   ....++|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKK----IG-AEYVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CcEEEECCCccHHHHHHHHhCCCCCc
Confidence            45566664  899999999999993  68999999999988777765    46 2111111111211111   1113589


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-.  +|   .  .......+.+++||+++.-.
T Consensus       215 ~vid~--~g---~--~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         215 IFFDA--VG---G--GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             EEEEC--CC---c--HHHHHHHHhhCCCCEEEEEE
Confidence            88853  22   1  12345577889999988754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.65  E-value=1  Score=46.55  Aligned_cols=100  Identities=21%  Similarity=0.255  Sum_probs=62.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|.-||+|..|.+.......  .|  .+|+-+|++++..+ .|..+..... +.....+..+|-    .++.+.|+|++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence            479999999988887665442  34  68999999998765 5555554433 223344444543    24577999999


Q ss_pred             ccccCChh--h-----------HHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEE--E-----------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~e--d-----------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.....+  .           ...+...+.+ ..|.|++++.+
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence            87763211  1           2344444454 34677777653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.54  E-value=0.66  Score=52.19  Aligned_cols=96  Identities=17%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvV  207 (535)
                      ..+|+-+|+|++|........  ..|-.|+.||.|++.++.+++    .|     ...+.||+.+..    ....+.|+|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence            368999999998887554433  257789999999999988764    46     367899998632    133568888


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-   .+....+-...|.+.|...+++|..
T Consensus       469 v~~~~d---~~~n~~i~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNE---PEDTMKIVELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCC---HHHHHHHHHHHHHHCCCCeEEEEeC
Confidence            775332   3334344455667899999999875

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.48  E-value=0.58  Score=53.74  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=72.3

Q ss_pred             CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEcccc
Q 041205          132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIM  195 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~  195 (535)
                      -++|.-||+|.+|-.--. +|.  ..|..|+-+|.+++.++.++..+++.       |.+.        .+|++. .|  
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~--  383 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD--  383 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence            478999999998766333 442  26899999999999999987765431       2111        245543 12  


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       + ..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus       384 -~-~~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS  426 (708)
T PRK11154        384 -Y-RGFKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTS  426 (708)
T ss_pred             -h-HHhccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence             1 234678998864 333357899999999999999999988763

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.46  E-value=0.54  Score=54.07  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~e  196 (535)
                      ++|.-||+|.+|-.-- ++|.   .|..|+-+|+++++++.++..+++       .|.+        -.+|++. .|.  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  387 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY--  387 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence            6899999999876633 3444   689999999999999988765432       1211        1345542 222  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        ..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus       388 --~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTS  429 (715)
T PRK11730        388 --AGFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTS  429 (715)
T ss_pred             --HHhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence              234678998864 333358899999999999999999988763

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.43  E-value=0.58  Score=46.97  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~~  203 (535)
                      ..+.++.+||-.|+|.+|..++.+|+.  .|.+|+++..+++..+..++    .| ...-+.....+..+ +.  .....
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~  227 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEG  227 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCC
Confidence            356788999999999899999999994  58999999888887776654    33 21112222212111 11  11235


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+|+-...-      ...+..+.+.|+++|.++.-.
T Consensus       228 vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         228 ADVVIDATGN------PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence            8999864221      346788889999999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=92.42  E-value=0.88  Score=47.30  Aligned_cols=99  Identities=15%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--c----ccccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--I----MEVKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A----~el~~  199 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+.+|.+++..+.+++    +| ...-+.....+  .    .++. 
T Consensus       186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~-  257 (373)
T cd08299         186 AKVTPGSTCAVFGLGGVGLSAIMGCKA--AGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMT-  257 (373)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHh-
Confidence            456788999999999999999999994  577 89999999988766644    45 31112211111  1    1111 


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHH-HHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGH-IRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~e-L~rvLKPGGvLVvRs  240 (535)
                      . ..+|+|+-....      ...+.. +...+++||+++.-.
T Consensus       258 ~-~~~d~vld~~g~------~~~~~~~~~~~~~~~G~~v~~g  292 (373)
T cd08299         258 D-GGVDFSFEVIGR------LDTMKAALASCHEGYGVSVIVG  292 (373)
T ss_pred             C-CCCeEEEECCCC------cHHHHHHHHhhccCCCEEEEEc
Confidence            1 358988754221      334555 344456788888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.31  E-value=0.45  Score=50.53  Aligned_cols=75  Identities=19%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh-hHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE-TANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp-eAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+++|+.+|+|.+|++......  ..|..|+++|.++ +.++....-+...|     ++++.+|..+  ...+.+|+|+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~   74 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV   74 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence            4689999999987775444333  3689999999986 33222111223334     5677788654  23356999998


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      ++.+.
T Consensus        75 ~~g~~   79 (450)
T PRK14106         75 SPGVP   79 (450)
T ss_pred             CCCCC
Confidence            77653

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.22  E-value=0.76  Score=46.74  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=57.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHH--HhhcCCcCCCeEEE-EccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRI--VSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~l--i~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|..||+|.+|.+....+...-.+ +|+-+|++++.. .+...  ...........++. ++|.    .++.+.|+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~-~~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP-QGKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh-HHHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence            6899999999888866544421113 999999999875 33322  22211011223343 2342    23467899998


Q ss_pred             ccccCC-------------hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGN-------------EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm-------------~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+.+..             .+-+..++..+.+.. |++++++
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv  117 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIV  117 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            764421             134667777777765 5564444

>PLN02702 L-idonate 5-dehydrogenase

Probab=92.20  E-value=0.65  Score=47.53  Aligned_cols=101  Identities=15%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE--Eccccc----cc-
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFL--TCDIME----VK-  198 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi--~GDA~e----l~-  198 (535)
                      ..+.++.+||-+|+|++|..++.+|++  .|+ .|+++|.+++..+.+++    .| ....+.+.  ..+..+    +. 
T Consensus       177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~  249 (364)
T PLN02702        177 ANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQK  249 (364)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHhh
Confidence            345788999999999999999999994  465 48999999888776665    34 22222221  112111    10 


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .....+|+|+-....      ...+....+.|+++|+++.-.
T Consensus       250 ~~~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        250 AMGGGIDVSFDCVGF------NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             hcCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence            011358988864221      346888899999999988754

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=92.18  E-value=0.68  Score=47.23  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+-.. +++   .|..|+.+|.+++..+...    ..| .    . ...+..++.......|+|++.-
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g-~----~-~~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLG-I----T-ARHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCC-C----e-ecCCHHHHHHhCCCCCEEEEEe
Confidence            47999999988775322 223   5778999999998766543    345 1    1 1233333332222368998742


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .-.  +.-..+++.+...+++|.+++--
T Consensus        68 p~~--~~~~~v~~~i~~~l~~g~ivid~   93 (299)
T PRK12490         68 PAG--EVTESVIKDLYPLLSPGDIVVDG   93 (299)
T ss_pred             cCc--hHHHHHHHHHhccCCCCCEEEEC
Confidence            221  24567778888888888766544

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=92.16  E-value=1.2  Score=42.83  Aligned_cols=95  Identities=16%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCc
Q 041205          128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~F  204 (535)
                      .+.++.+|+-.|+ |++|..++.+|+.  .|.+|++++.++ ..+.+    +..| ..   .++.....+..  .....+
T Consensus       141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~  209 (309)
T cd05289         141 GLKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGV  209 (309)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCc
Confidence            3578899999995 8999999999884  688999988766 44444    3455 21   12111111111  122358


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-.  .+   .  .......+.++++|.++.-.
T Consensus       210 d~v~~~--~~---~--~~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         210 DAVLDT--VG---G--ETLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             eEEEEC--Cc---h--HHHHHHHHHHhcCcEEEEEc
Confidence            988853  22   1  16778888999999988653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.12  E-value=0.23  Score=54.92  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE  167 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp  167 (535)
                      ...+++|+-||+||.|+++...+.+  .|.+|+.+|..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            3678999999999999999988774  578999999543

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=92.03  E-value=0.66  Score=46.70  Aligned_cols=101  Identities=20%  Similarity=0.204  Sum_probs=67.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccc-ccc-CCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIME-VKE-KLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~e-l~~-dL~~  203 (535)
                      ..+.++.+|+-.|+|++|..++.+|+.  .|.+|++++.+++..+.++    ..| ...-+.... .+..+ +.. ..+.
T Consensus       161 ~~~~~~~~vlV~g~g~vg~~~~~~a~~--~G~~vi~~~~~~~~~~~~~----~~g-~~~~i~~~~~~~~~~~~~~~~~~~  233 (345)
T cd08260         161 ARVKPGEWVAVHGCGGVGLSAVMIASA--LGARVIAVDIDDDKLELAR----ELG-AVATVNASEVEDVAAAVRDLTGGG  233 (345)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHH----HhC-CCEEEccccchhHHHHHHHHhCCC
Confidence            345788999999999999999999994  5899999999988776664    345 311111111 11111 100 1126


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+|+-.  ++    ....+....+.|+++|.++.-.
T Consensus       234 ~d~vi~~--~g----~~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         234 AHVSVDA--LG----IPETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             CCEEEEc--CC----CHHHHHHHHHHhhcCCEEEEeC
Confidence            9988853  32    1346778889999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.02  E-value=1.3  Score=46.18  Aligned_cols=76  Identities=18%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHH--HhhcCCcCCCeEEEE-ccccccccCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRI--VSSDDEIEKRMKFLT-CDIMEVKEKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~l--i~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDv  206 (535)
                      +.++|..||+|.+|.+....+.  ..| ..|+-+|++++.. .|+.+  .......+...++.. +|.    .++.+.|+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDi   77 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDV   77 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCE
Confidence            4579999999999887766544  245 4799999999953 22222  111110112345553 553    24567899


Q ss_pred             EEecccc
Q 041205          207 IILAALA  213 (535)
Q Consensus       207 VfiaALV  213 (535)
                      |++.+.+
T Consensus        78 VI~tag~   84 (321)
T PTZ00082         78 VIVTAGL   84 (321)
T ss_pred             EEECCCC
Confidence            9987654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.00  E-value=0.8  Score=50.71  Aligned_cols=95  Identities=11%  Similarity=0.028  Sum_probs=65.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf  208 (535)
                      .+|+-+|+|+.|.......+  ..|..|+.||.|++.++.+++    .|     ...++||+.+..    ...+++|.|+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence            78999999998877554433  257789999999999888764    35     478899998632    2345789887


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +...-   .+....+-...+.+.|+..++.|..
T Consensus       487 v~~~~---~~~~~~iv~~~~~~~~~~~iiar~~  516 (558)
T PRK10669        487 LTIPN---GYEAGEIVASAREKRPDIEIIARAH  516 (558)
T ss_pred             EEcCC---hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            75322   1222233334566789989988763

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=91.99  E-value=0.73  Score=46.62  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc----ccccCC-C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM----EVKEKL-G  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~----el~~dL-~  202 (535)
                      ..++++||-.|+|++|..++.+|+.  .|+ .|+.++.+++..+.+++    .| . +  .++..+-.    .+.... +
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~~~~~~~~~~~~~~~  242 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKA--LGPANIIVVDIDEAKLEAAKA----AG-A-D--VVVNGSDPDAAKRIIKAAGG  242 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-C-c--EEecCCCccHHHHHHHHhCC
Confidence            3478999999999999999999994  577 79999999887766643    45 2 1  12111100    011111 2


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+|+-....      ...+....+.|+++|+++.-.
T Consensus       243 ~~d~vid~~g~------~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         243 GVDAVIDFVNN------SATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             CCcEEEECCCC------HHHHHHHHHHhhcCCeEEEEC
Confidence            58998843221      346888899999999998653

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.98  E-value=0.89  Score=44.56  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+++||-||.|..++..+...-  ..|+.|+-|+-+..  +.-+.+. ..|    +++++.++..  ..++.++|+||++
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l~-~~~----~i~~~~~~~~--~~dl~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLLA-EQG----GITWLARCFD--ADILEGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHHH-HcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence            4789999999988877554433  36899999976543  1112222 223    6889888864  3456789999987


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ...      .++-..+....+.-|+++
T Consensus        77 t~d------~~ln~~i~~~a~~~~ilv   97 (205)
T TIGR01470        77 TDD------EELNRRVAHAARARGVPV   97 (205)
T ss_pred             CCC------HHHHHHHHHHHHHcCCEE
Confidence            443      222334444444456665

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.95  E-value=0.52  Score=47.35  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=57.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEE--eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNI--DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI--DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..+++||-||.|..+..-+...-  -.|++|+-|  +++++..+++.     .|    +|+++..+..  +.++.++++|
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll--~~gA~VtVVap~i~~el~~l~~-----~~----~i~~~~r~~~--~~dl~g~~LV   89 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFL--KKGCYVYILSKKFSKEFLDLKK-----YG----NLKLIKGNYD--KEFIKDKHLI   89 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCCCHHHHHHHh-----CC----CEEEEeCCCC--hHHhCCCcEE
Confidence            46889999999988776554332  257776666  88888765432     33    6888887653  3456789999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      |.+..-      ..+=+.++...+.-+.++
T Consensus        90 iaATdD------~~vN~~I~~~a~~~~~lv  113 (223)
T PRK05562         90 VIATDD------EKLNNKIRKHCDRLYKLY  113 (223)
T ss_pred             EECCCC------HHHHHHHHHHHHHcCCeE
Confidence            987433      344445555554434333

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.93  E-value=0.84  Score=50.31  Aligned_cols=99  Identities=14%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      .+|.+||.|.+|.+-.. |++   .|.+|+++|++++.++...+.....| .  .+. ...+..++...+...|+||+..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~~g-~--~i~-~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKEGN-T--RVK-GYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhhcC-C--cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence            47999999988766322 223   57799999999999876655433334 1  222 2345555544444679888752


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .-+  ..-..+++.+...|+||-++ ++..
T Consensus        75 ~~~--~~v~~vi~~l~~~L~~g~iI-ID~g  101 (470)
T PTZ00142         75 KAG--EAVDETIDNLLPLLEKGDII-IDGG  101 (470)
T ss_pred             CCh--HHHHHHHHHHHhhCCCCCEE-EECC
Confidence            322  34567888999999988665 4443

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.90  E-value=0.85  Score=46.39  Aligned_cols=91  Identities=18%  Similarity=0.275  Sum_probs=55.2

Q ss_pred             CEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|.+||||-+|.+-..- .+. +.+..+|+++|.+++..+.   +.++.| .    +. +.|..++.   ...|+||++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~---l~~~~g-~----~~-~~~~~e~~---~~aDiIiLa   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN---ASDKYG-I----TI-TTNNNEVA---NSADILILS   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH---HHHhcC-c----EE-eCCcHHHH---hhCCEEEEE
Confidence            589999999887664331 121 1234579999999877544   333345 2    22 23332222   357999996


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                       ...  ..-..+++++...+++|.+++.
T Consensus        71 -vkP--~~~~~vl~~l~~~~~~~~lvIS   95 (272)
T PRK12491         71 -IKP--DLYSSVINQIKDQIKNDVIVVT   95 (272)
T ss_pred             -eCh--HHHHHHHHHHHHhhcCCcEEEE
Confidence             432  5667778888887777654443

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.80  E-value=0.29  Score=54.04  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=51.4

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      --||+||+|+ |+-+++.++.  .+-.|++++.--.|.+.||++..+.| ++++|+++.---+++.
T Consensus        68 v~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   68 VFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccccceee
Confidence            4689999996 7777766662  35579999999999999999999999 9999999876655544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=91.78  E-value=0.5  Score=47.77  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-----cCCCeEEEEccccccccCC---
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-----IEKRMKFLTCDIMEVKEKL---  201 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-----Ls~rI~Fi~GDA~el~~dL---  201 (535)
                      ++.--++||||| .|.-.+-|+. .+|++-|.|.+|-....+.-+..++.++-     .-.+|.+...+++......   
T Consensus        59 ~~kvefaDIGCG-yGGLlv~Lsp-~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k  136 (249)
T KOG3115|consen   59 NKKVEFADIGCG-YGGLLMKLAP-KFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK  136 (249)
T ss_pred             cccceEEeeccC-ccchhhhccc-cCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh
Confidence            345678999999 5555577887 69999999999999998888888776541     1256778888876544322   


Q ss_pred             CC-cceEEeccccCC--hhhH-----HHHHHHHHhhcccCeEEEEEc
Q 041205          202 GE-YDCIILAALAGN--EEEK-----AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~-FDvVfiaALVgm--~edK-----~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +. +-..|+.-.-|.  ...|     ...+.++.=++++||.+..-+
T Consensus       137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            11 333333333332  1222     235677778899999887765

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=91.74  E-value=0.92  Score=44.94  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc----cccccCC
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI----MEVKEKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA----~el~~dL  201 (535)
                      ..+.++.+||-.| +|++|..++.+|++  .|++|++++.+++..+.+++.   .| ...-+.....+.    .+.. . 
T Consensus       141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~~~~~v~~~~-~-  212 (329)
T cd05288         141 GKPKPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE---LG-FDAAINYKTPDLAEALKEAA-P-  212 (329)
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh---cC-CceEEecCChhHHHHHHHhc-c-
Confidence            3456789999999 69999999999994  688999999999876665542   34 211111111111    1111 1 


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+|+-.  +|     ...+....+.++++|.++.-.
T Consensus       213 ~~~d~vi~~--~g-----~~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         213 DGIDVYFDN--VG-----GEILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             CCceEEEEc--ch-----HHHHHHHHHhcCCCceEEEEe
Confidence            468988842  33     136788889999999988653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=91.72  E-value=0.93  Score=45.45  Aligned_cols=95  Identities=22%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             CCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++.+|+-.| +|++|..++.+|+.  .|++|+++..+ +.    +..++..| ...-+.....+..+.......+|+|+-
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~-~~----~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~  233 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKA--WGAHVTTTCST-DA----IPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD  233 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH--CCCeEEEEeCc-ch----HHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence            489999999 79999999999984  57888888744 33    33445556 311111111111111112246899985


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .  ++   ..  .+..+.+.++++|.++.-.
T Consensus       234 ~--~g---~~--~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         234 T--VG---GD--TEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             C--CC---hH--HHHHHHHHhccCCEEEEec
Confidence            3  32   12  6788889999999998753

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=91.67  E-value=0.82  Score=45.89  Aligned_cols=100  Identities=21%  Similarity=0.289  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~F  204 (535)
                      .+.++.+||-.|+|.+|..++.+|++  .|.. |++++.+++..+..+    ..| ...-+........++..  .-.++
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVAR----ELG-ADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHH----HcC-CCEEecCccccHHHHHHHhCCCCC
Confidence            45788999999999999999999994  5776 999999887766554    345 21111111111111111  11249


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-.  ++    ....+..+.+.|+++|+++.-.
T Consensus       229 d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         229 DLVIEA--AG----SPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CEEEEC--CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence            999864  22    1346788889999999988754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK06545 prephenate dehydrogenase; Validated

Probab=91.64  E-value=0.61  Score=48.98  Aligned_cols=91  Identities=23%  Similarity=0.292  Sum_probs=55.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|.+||+|.+|.+-.....+  .|..|..+|.|+...+.+..  ...| ..+.   ...|.   .......|+||++.-
T Consensus         1 ~~I~iIG~GliG~siA~~L~~--~G~~v~i~~~~~~~~~~~~a--~~~~-~~~~---~~~~~---~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKA--AGPDVFIIGYDPSAAQLARA--LGFG-VIDE---LAADL---QRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHh--cCCCeEEEEeCCCHHHHHHH--hcCC-CCcc---cccCH---HHHhcCCCEEEEeCC
Confidence            479999999988776554442  34466667777665554442  2233 1111   11121   112356899999755


Q ss_pred             cCChhhHHHHHHHHHh-hcccCeEEE
Q 041205          213 AGNEEEKAKILGHIRK-YMKEGGVLL  237 (535)
Q Consensus       213 Vgm~edK~~VL~eL~r-vLKPGGvLV  237 (535)
                      .   .....++.++.+ .++||.+|.
T Consensus        70 ~---~~~~~vl~~l~~~~l~~~~ivt   92 (359)
T PRK06545         70 V---DATAALLAELADLELKPGVIVT   92 (359)
T ss_pred             H---HHHHHHHHHHhhcCCCCCcEEE
Confidence            5   567888898887 488875443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.60  E-value=0.68  Score=46.57  Aligned_cols=87  Identities=21%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+ +..+++   .|.+|+++|.+++.++...    ..| .    .+ +.+..++   ....|+||+..
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~----~~g-~----~~-~~~~~e~---~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVI----AAG-A----ET-ASTAKAV---AEQCDVIITML   66 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHH----HCC-C----ee-cCCHHHH---HhcCCEEEEeC
Confidence            58999999998865 334444   6789999999998766543    234 1    11 2232222   24689999864


Q ss_pred             ccCChhhHHHHH---HHHHhhcccCeEEE
Q 041205          212 LAGNEEEKAKIL---GHIRKYMKEGGVLL  237 (535)
Q Consensus       212 LVgm~edK~~VL---~eL~rvLKPGGvLV  237 (535)
                      ...  ..-..++   +.+...++||.+++
T Consensus        67 p~~--~~~~~v~~~~~~~~~~~~~g~iii   93 (296)
T PRK11559         67 PNS--PHVKEVALGENGIIEGAKPGTVVI   93 (296)
T ss_pred             CCH--HHHHHHHcCcchHhhcCCCCcEEE
Confidence            331  1223343   44667788877776

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=91.57  E-value=0.72  Score=47.28  Aligned_cols=102  Identities=21%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE--KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~--dL~  202 (535)
                      ..+.++.+||-.|+|++|..++.+|+.  .|.. |++++.+++..+.++    ..| ...-+.....+..+ +..  +..
T Consensus       178 ~~~~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~----~~g-~~~vv~~~~~~~~~~l~~~~~~~  250 (363)
T cd08279         178 ARVRPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELAR----RFG-ATHTVNASEDDAVEAVRDLTDGR  250 (363)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHH----HhC-CeEEeCCCCccHHHHHHHHcCCC
Confidence            456788999999999999999999994  5775 999999988776654    345 21111111111111 111  123


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+|+|+-...      ....+..+.+.|+++|+++.-..
T Consensus       251 ~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g~  283 (363)
T cd08279         251 GADYAFEAVG------RAATIRQALAMTRKGGTAVVVGM  283 (363)
T ss_pred             CCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEec
Confidence            5998875322      13567888999999999987543

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.54  E-value=0.86  Score=44.85  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccc-cc--cCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIME-VK--EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~e-l~--~dL~  202 (535)
                      ..+.++.+|+-.|+|++|..++.+|+.  .|++|+.++.+++..+.++.+    | ...-+.... .+..+ +.  ....
T Consensus       156 ~~~~~g~~vli~g~g~~g~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~  228 (336)
T cd08276         156 GPLKPGDTVLVQGTGGVSLFALQFAKA--AGARVIATSSSDEKLERAKAL----G-ADHVINYRTTPDWGEEVLKLTGGR  228 (336)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc----C-CCEEEcCCcccCHHHHHHHHcCCC
Confidence            345788999999999999999999994  689999999999888777653    5 211111111 11111 01  1113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+|+++-.  ++     ...+....+.++++|.++.-.
T Consensus       229 ~~d~~i~~--~~-----~~~~~~~~~~l~~~G~~v~~g  259 (336)
T cd08276         229 GVDHVVEV--GG-----PGTLAQSIKAVAPGGVISLIG  259 (336)
T ss_pred             CCcEEEEC--CC-----hHHHHHHHHhhcCCCEEEEEc
Confidence            58998853  22     235777889999999988654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=91.52  E-value=0.6  Score=52.59  Aligned_cols=107  Identities=18%  Similarity=0.277  Sum_probs=78.2

Q ss_pred             CCEEEEEccCCChhh--HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          132 LKKVAFVGSGPMPLT--SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIGSGplPlT--AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ...|+-+|.|-+|+-  ++..|+......++.+||-+|.|+-.=.. ....+ .+++|+++.+|-.++..+....|+++.
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMRKWNAPREQADIIVS  445 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEeccccccCCchhhccchHH
Confidence            456777788776664  44445533346789999999999866554 33334 558999999999888755456898876


Q ss_pred             cccc---CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALA---GNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALV---gm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      . ++   |.-+--.+.|+.+-+.|||+|+-|=+++
T Consensus       446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             H-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            5 44   3356678999999999999999887764

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=91.48  E-value=0.25  Score=45.32  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             CeEEEEccccccccCC-CCcceEEeccccCC-hh--hHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCc
Q 041205          186 RMKFLTCDIMEVKEKL-GEYDCIILAALAGN-EE--EKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDF  259 (535)
Q Consensus       186 rI~Fi~GDA~el~~dL-~~FDvVfiaALVgm-~e--dK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GF  259 (535)
                      .+++..||+.+....+ ..||+||+|+.-.- .+  =-.+++..+++.++|||+++.-+..|.       |-.  ...||
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~-------Vr~~L~~aGF  104 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGA-------VRRALQQAGF  104 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHH-------HHHHHHHCTE
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHH-------HHHHHHHcCC
Confidence            4677899998766655 46999999965421 11  126799999999999999999776551       222  23799


Q ss_pred             EEEEEEc
Q 041205          260 KVLSIFH  266 (535)
Q Consensus       260 eil~v~h  266 (535)
                      ++...-.
T Consensus       105 ~v~~~~g  111 (124)
T PF05430_consen  105 EVEKVPG  111 (124)
T ss_dssp             EEEEEE-
T ss_pred             EEEEcCC
Confidence            9854433

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=91.43  E-value=0.82  Score=45.84  Aligned_cols=136  Identities=10%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccc------c--
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVK------E--  199 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~------~--  199 (535)
                      +.|+++|||+|+.|+..|-...-+ .-|.+-|.|||+=.-           .. . ..++++++ |+.+-.      .  
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr-~~p~g~v~gVDllh~-----------~p-~-~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQR-VNPNGMVLGVDLLHI-----------EP-P-EGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHh-hCCCceEEEEeeeec-----------cC-C-CCcccccccccCCHHHHHHHHHhC
Confidence            478999999999987666544422 358999999998531           12 1 34677777 665411      1  


Q ss_pred             CCCCcceEEecccc---CC-hhhHHHHHHHH-------HhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEEcC
Q 041205          200 KLGEYDCIILAALA---GN-EEEKAKILGHI-------RKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIFHP  267 (535)
Q Consensus       200 dL~~FDvVfiaALV---gm-~edK~~VL~eL-------~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~hP  267 (535)
                      +....|+|+.+-.-   |. ..|-.+.++-+       ...++|+|.+++...+|-..-.   +..++ .-|+.+..+.|
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r~l~~~f~~Vk~vKP  209 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQRRLQAVFTNVKKVKP  209 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHHHHHHHhhhcEeeCC
Confidence            11348999876222   44 45555555555       4567899999998876621100   00022 45777777777


Q ss_pred             CC---cceeeeEEEecC
Q 041205          268 TN---DVINSVVLLQLP  281 (535)
Q Consensus       268 ~~---eVINSVVvARK~  281 (535)
                      +.   +-..++.++++.
T Consensus       210 ~Asr~eS~E~y~v~~~~  226 (232)
T KOG4589|consen  210 DASRDESAETYLVCLNF  226 (232)
T ss_pred             ccccccccceeeeeeec
Confidence            54   333456777654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.34  E-value=2.6  Score=43.95  Aligned_cols=104  Identities=22%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHhhcCCcCCCeEEEE-ccccccccCCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-ANNLARRIVSSDDEIEKRMKFLT-CDIMEVKEKLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-AIelAR~li~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDvVf  208 (535)
                      +..+|.-||+|.+|.|..+.+...--..+++=+|++++ +-..+..+..... +.....+.. +|..    ++.+.|+|+
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy~----~~~~adivv   76 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDYS----VTANSKVVI   76 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCHH----HhCCCCEEE
Confidence            45799999999999987765542223457999999886 3355555555543 222224443 5542    356789999


Q ss_pred             ecccc----CC-h----hh----HHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALA----GN-E----EE----KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALV----gm-~----ed----K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+..    || .    ..    ...+...+.++ .|.|++++-+
T Consensus        77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs  120 (312)
T cd05293          77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS  120 (312)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence            86554    33 1    11    23344444554 5667666644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=91.34  E-value=1.1  Score=43.19  Aligned_cols=98  Identities=17%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--d  200 (535)
                      ..+.++.+||-.| +|++|..++.+|+.  .|+.|++++.+++..+.+++    .| . +.+ +...  +..+ +..  .
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~~-~~~~~~~~~~~~~~~~~  202 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA----AG-A-DHV-INYRDEDFVERVREITG  202 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----CC-C-CEE-EeCCchhHHHHHHHHcC
Confidence            4567889999999 79999999999994  58999999999887766543    45 2 111 1111  1111 111  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..++|+|+-.  ++   .  ..+....+.|+++|.++.-.
T Consensus       203 ~~~~d~vl~~--~~---~--~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         203 GRGVDVVYDG--VG---K--DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             CCCeeEEEEC--CC---c--HhHHHHHHhhccCcEEEEEe
Confidence            2359999853  22   1  35667788999999988643

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=91.30  E-value=0.78  Score=47.01  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccc--cCCCC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVK--EKLGE  203 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~--~dL~~  203 (535)
                      .+.++.+||-.|+|++|..++.+|+.  .|.. |++++.+++..+.+++    .| ...-+.....+.. ++.  .....
T Consensus       184 ~~~~g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~  256 (367)
T cd08263         184 DVRPGETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKE----LG-ATHTVNAAKEDAVAAIREITGGRG  256 (367)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CceEecCCcccHHHHHHHHhCCCC
Confidence            44678999999999999999999994  4677 9999999887776654    34 2111111111111 111  11245


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|+-.  ++   .. ..+..+.+.|+++|.++.-.
T Consensus       257 ~d~vld~--vg---~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         257 VDVVVEA--LG---KP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             CCEEEEe--CC---CH-HHHHHHHHHHhcCCEEEEEc
Confidence            9999843  32   11 36788899999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.28  E-value=2  Score=45.52  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FD  205 (535)
                      ...++|+.+|+|.+|.+......  ..|..|+.||.|++.++..++.    +   ..+.++.||+.+..    .....+|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence            34689999999988777544433  2578999999999988766553    2   23578899987531    2335689


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .|++...-   ....-+...+.+.+.+. .++++.
T Consensus       300 ~vi~~~~~---~~~n~~~~~~~~~~~~~-~ii~~~  330 (453)
T PRK09496        300 AFIALTND---DEANILSSLLAKRLGAK-KVIALV  330 (453)
T ss_pred             EEEECCCC---cHHHHHHHHHHHHhCCC-eEEEEE
Confidence            88864332   22333344445666655 444443

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=91.20  E-value=1.9  Score=43.31  Aligned_cols=99  Identities=19%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccc--cCCCC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVK--EKLGE  203 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~--~dL~~  203 (535)
                      .+.++.+||-.|+|++|..++.+|+.  .|. +|++++.+++..+.+++    +| . .-+.....+.. .+.  ....+
T Consensus       164 ~~~~~~~vlI~g~g~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~~----~g-~-~~~~~~~~~~~~~l~~~~~~~~  235 (344)
T cd08284         164 QVRPGDTVAVIGCGPVGLCAVLSAQV--LGAARVFAVDPVPERLERAAA----LG-A-EPINFEDAEPVERVREATEGRG  235 (344)
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----hC-C-eEEecCCcCHHHHHHHHhCCCC
Confidence            34678999999999999999999994  575 89999888877666554    55 2 11111111110 111  11235


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+|+-...      ....+....+.|+++|.++.-.
T Consensus       236 ~dvvid~~~------~~~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         236 ADVVLEAVG------GAAALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             CCEEEECCC------CHHHHHHHHHhcccCCEEEEEC
Confidence            998876422      1346778888999999988654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.20  E-value=1.7  Score=42.35  Aligned_cols=100  Identities=17%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .+.++.+|+-.|+ |++|..++.+|+.  .|++|++++-+ +..+    .++..| ...-+.....+..........+|+
T Consensus       140 ~~~~g~~vli~g~~g~~g~~~~~la~~--~g~~v~~~~~~-~~~~----~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~  211 (319)
T cd08267         140 KVKPGQRVLINGASGGVGTFAVQIAKA--LGAHVTGVCST-RNAE----LVRSLG-ADEVIDYTTEDFVALTAGGEKYDV  211 (319)
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHH--cCCEEEEEeCH-HHHH----HHHHcC-CCEeecCCCCCcchhccCCCCCcE
Confidence            3578999999997 8899999999983  68899999854 4433    344556 311111111111000112245899


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+-...-    ........+. .++++|.++.-.
T Consensus       212 vi~~~~~----~~~~~~~~~~-~l~~~g~~i~~g  240 (319)
T cd08267         212 IFDAVGN----SPFSLYRASL-ALKPGGRYVSVG  240 (319)
T ss_pred             EEECCCc----hHHHHHHhhh-ccCCCCEEEEec
Confidence            9854221    1233333333 399999988754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=91.19  E-value=1  Score=44.09  Aligned_cols=86  Identities=24%  Similarity=0.351  Sum_probs=53.2

Q ss_pred             EEEEEccCCChhhHHHHHh----hcCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEE-EccccccccCCCCc
Q 041205          134 KVAFVGSGPMPLTSIILAS----QHMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEY  204 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk----~~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~F  204 (535)
                      ||.+||.|..-++-.++.-    ..+++.+|+=+|+|++.++.    +++++++.| .  .++|. +.|-.   ..+.+.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~--~~~v~~ttd~~---eAl~gA   74 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-A--DLKVEATTDRR---EALEGA   74 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-T--SSEEEEESSHH---HHHTTE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-C--CeEEEEeCCHH---HHhCCC
Confidence            6899999986666444422    12567899999999998875    455566667 3  45553 33433   334678


Q ss_pred             ceEEeccccCChhhHHHHHHHHH
Q 041205          205 DCIILAALAGNEEEKAKILGHIR  227 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~  227 (535)
                      |+|+....+|  ..+.+.+++=.
T Consensus        75 DfVi~~irvG--g~~~r~~De~I   95 (183)
T PF02056_consen   75 DFVINQIRVG--GLEAREIDEEI   95 (183)
T ss_dssp             SEEEE---TT--HHHHHHHHHHT
T ss_pred             CEEEEEeeec--chHHHHHHHHH
Confidence            9999998887  34555555443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.16  E-value=0.6  Score=51.02  Aligned_cols=72  Identities=10%  Similarity=0.027  Sum_probs=51.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|+.+|.|+.|++++.++.  ..|+.|++.|..+...+.    ++..|     +.++.++..  ...+..+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~~--~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSDA--VQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcch--HhHhhcCCEEEE
Confidence            46789999999999999998766  378999999987664332    33345     455554321  223356899999


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      +..+.
T Consensus        77 SpGi~   81 (488)
T PRK03369         77 SPGFR   81 (488)
T ss_pred             CCCCC
Confidence            87774

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.16  E-value=0.48  Score=42.58  Aligned_cols=94  Identities=10%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             EEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEccccccc-cCCCCcceEEe
Q 041205          135 VAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIMEVK-EKLGEYDCIIL  209 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~el~-~dL~~FDvVfi  209 (535)
                      |+-+|+|++|..--+.-.  ..|..|+.++..+ .++.    +++.|.    ...+..+......... .....||+||+
T Consensus         1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv   73 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV   73 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred             CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence            678999976655333322  2789999999998 4443    222230    0001111111111111 23357999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      . .+.  .+-..+++.+.+.+.|++.+++
T Consensus        74 ~-vKa--~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   74 A-VKA--YQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             --SSG--GGHHHHHHHHCTGEETTEEEEE
T ss_pred             E-ecc--cchHHHHHHHhhccCCCcEEEE
Confidence            6 543  4667799999999999965554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=91.14  E-value=1.6  Score=42.49  Aligned_cols=99  Identities=14%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCCCc
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLGEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~~F  204 (535)
                      ..+.++.+||-.|. |++|..++.+|+.  .|++|++++.+++..+.++    ..| . +.+-....+..+ +.....++
T Consensus       138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~  209 (320)
T cd08243         138 LGLQPGDTLLIRGGTSSVGLAALKLAKA--LGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGF  209 (320)
T ss_pred             cCCCCCCEEEEEcCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCc
Confidence            34578899999996 8999999999994  6899999999987765553    456 3 222101111111 11112459


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-.  ++   .  ..+..+.+.++++|+++.-.
T Consensus       210 d~vl~~--~~---~--~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         210 DKVLEL--VG---T--ATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             eEEEEC--CC---h--HHHHHHHHHhccCCEEEEEc
Confidence            988842  32   1  36788889999999987754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.04  E-value=1.3  Score=46.15  Aligned_cols=103  Identities=17%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHH-HhhcCC-cCCCeEEEE-ccccccccCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRI-VSSDDE-IEKRMKFLT-CDIMEVKEKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~l-i~~lG~-Ls~rI~Fi~-GDA~el~~dL~~FDv  206 (535)
                      +..+|.-||+|.+|++...++..  .| +.++=+|++++..+ +..+ ...... .+....+.. +|-    ..+.+.|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~----~~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY----EDIKDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH----HHhCCCCE
Confidence            46799999999999997665542  34 68999999987644 4333 111110 112344443 332    24467899


Q ss_pred             EEeccccCC-h------------hhHHHHHHHHHhhcccCe-EEEEEcc
Q 041205          207 IILAALAGN-E------------EEKAKILGHIRKYMKEGG-VLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm-~------------edK~~VL~eL~rvLKPGG-vLVvRsa  241 (535)
                      |++.+.++- .            +-+.++...+.++ .|.+ ++++-|+
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP  124 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNP  124 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence            999876632 1            2244566666665 4666 4444443

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=90.98  E-value=1.3  Score=42.84  Aligned_cols=100  Identities=19%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCC
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~  202 (535)
                      ..+.++.+|+-.|+ |++|..++.+|+.  .|++|++++.+++..+.+++    .| ...-+.....+..+..   ....
T Consensus       135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~  207 (323)
T cd08241         135 ARLQPGETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARA----LG-ADHVIDYRDPDLRERVKALTGGR  207 (323)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHH----cC-CceeeecCCccHHHHHHHHcCCC
Confidence            44578899999998 8899999889884  68999999999988776643    35 2111111111111100   1113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+|+|+-.  ++     ...+..+.+.++++|.++.-.
T Consensus       208 ~~d~v~~~--~g-----~~~~~~~~~~~~~~g~~v~~~  238 (323)
T cd08241         208 GVDVVYDP--VG-----GDVFEASLRSLAWGGRLLVIG  238 (323)
T ss_pred             CcEEEEEC--cc-----HHHHHHHHHhhccCCEEEEEc
Confidence            58988743  22     134566788899999988754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=90.94  E-value=0.78  Score=52.22  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=59.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|..||+|.+|.+.......  .|  .+|+++|.+++.++.++    ..| ...  . ...|.   .......|+||++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~--~G~~~~V~~~d~~~~~~~~a~----~~g-~~~--~-~~~~~---~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRE--RGLAREVVAVDRRAKSLELAV----SLG-VID--R-GEEDL---AEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHh--cCCCCEEEEEECChhHHHHHH----HCC-CCC--c-ccCCH---HHHhcCCCEEEEC
Confidence            689999999988876555442  33  47999999998877654    345 211  0 11121   1223568999996


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      .-.   .....++..+.+.++++.+|+
T Consensus        71 vp~---~~~~~vl~~l~~~~~~~~ii~   94 (735)
T PRK14806         71 VPV---LAMEKVLADLKPLLSEHAIVT   94 (735)
T ss_pred             CCH---HHHHHHHHHHHHhcCCCcEEE
Confidence            444   456788888888888876554

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=90.86  E-value=0.94  Score=45.64  Aligned_cols=111  Identities=14%  Similarity=0.064  Sum_probs=64.7

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH---HH-HH--HHHhhcCCcCCCeEEEEccccccc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN---NL-AR--RIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI---el-AR--~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      .+.++++++.|.|+=-| +|+-+-.++...-+.+.|.++=-++-..   .. .+  ...+..+  -.+++.+-.+...+.
T Consensus        42 ~FaGlkpg~tVid~~PG-gGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~--~aN~e~~~~~~~A~~  118 (238)
T COG4798          42 AFAGLKPGATVIDLIPG-GGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV--YANVEVIGKPLVALG  118 (238)
T ss_pred             EEeccCCCCEEEEEecC-CccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh--hhhhhhhCCcccccC
Confidence            34578999999999888 5676677888555666888775443311   11 11  1111112  123333333332222


Q ss_pred             cCCCCcceEEe--------ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIIL--------AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfi--------aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ..+.-|+++.        ...+| ..--.++...+++.|||||++++-+
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             -CCCcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEe
Confidence             2233444443        33333 2455788999999999999999976

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.85  E-value=0.79  Score=47.02  Aligned_cols=95  Identities=16%  Similarity=0.062  Sum_probs=55.7

Q ss_pred             CCCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhc----CC-cCCCeEEEEccccccccCCCC
Q 041205          130 AQLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSD----DE-IEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l----G~-Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      +..++|..||+|++|.+-.. |++   .|..|+.++.+++..+..++.-...    |. +..++.. ..|..+   ....
T Consensus         2 ~~~m~I~iIG~G~mG~~ia~~L~~---~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~-~~~~~e---~~~~   74 (328)
T PRK14618          2 HHGMRVAVLGAGAWGTALAVLAAS---KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYP-TADPEE---ALAG   74 (328)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE-eCCHHH---HHcC
Confidence            34679999999998866433 333   5778999999988766555431110    20 1111221 222222   2356


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .|+|++. ..      ...++.+.+.++|+..++.
T Consensus        75 aD~Vi~~-v~------~~~~~~v~~~l~~~~~vi~  102 (328)
T PRK14618         75 ADFAVVA-VP------SKALRETLAGLPRALGYVS  102 (328)
T ss_pred             CCEEEEE-Cc------hHHHHHHHHhcCcCCEEEE
Confidence            8999884 43      1135666677888865553

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.80  E-value=1.8  Score=46.19  Aligned_cols=74  Identities=11%  Similarity=0.131  Sum_probs=48.7

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH-HHHHhhcCCcCCCeEEEEcccccc---ccCCCCcceEEe
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA-RRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEYDCIIL  209 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA-R~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~FDvVfi  209 (535)
                      +|+.||.|+.|+++..++.  ..|..|++.|..+..-... ...+...|     +++..+...++   ...+.++|+|+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999999999999877766  3789999999876532211 12233445     56666553221   012456999998


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      ...+.
T Consensus        75 s~gi~   79 (459)
T PRK02705         75 SPGIP   79 (459)
T ss_pred             CCCCC
Confidence            76664

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.78  E-value=0.34  Score=49.77  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=56.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccccccC-----CCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVKEK-----LGE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~~d-----L~~  203 (535)
                      .+.-++||||.|+--+=.|+=  .|..|.+++|-|+|+.+++.|+.++..- + ++..|++....-.+..+.     ...
T Consensus        77 ~~~i~~LDIGvGAnCIYPliG--~~eYgwrfvGseid~~sl~sA~~ii~~N~~-l~~~I~lr~qk~~~~if~giig~nE~  153 (292)
T COG3129          77 GKNIRILDIGVGANCIYPLIG--VHEYGWRFVGSEIDSQSLSSAKAIISANPG-LERAIRLRRQKDSDAIFNGIIGKNER  153 (292)
T ss_pred             cCceEEEeeccCccccccccc--ceeecceeecCccCHHHHHHHHHHHHcCcc-hhhheeEEeccCccccccccccccce
Confidence            367899999999732222211  2356899999999999999999999887 5 777888865543322221     134


Q ss_pred             cceEEeccccC
Q 041205          204 YDCIILAALAG  214 (535)
Q Consensus       204 FDvVfiaALVg  214 (535)
                      ||+++..--.|
T Consensus       154 yd~tlCNPPFh  164 (292)
T COG3129         154 YDATLCNPPFH  164 (292)
T ss_pred             eeeEecCCCcc
Confidence            88888764443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.73  E-value=1.4  Score=44.34  Aligned_cols=93  Identities=15%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             CCEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          132 LKKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++|.+||+|.+|.+-..- .+. .....+|+.+|.+++.  .+..+....| .    +. ..|..++   ....|+||+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~~g-~----~~-~~~~~e~---~~~aDvVil   71 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQKYG-V----KG-THNKKEL---LTDANILFL   71 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHhcC-c----eE-eCCHHHH---HhcCCEEEE
Confidence            4799999999887654332 121 0123678899987532  2233333445 2    22 2333222   245799999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      + ...  .+-.+++..+...+++|.+|+.
T Consensus        72 a-v~p--~~~~~vl~~l~~~~~~~~liIs   97 (279)
T PRK07679         72 A-MKP--KDVAEALIPFKEYIHNNQLIIS   97 (279)
T ss_pred             E-eCH--HHHHHHHHHHHhhcCCCCEEEE
Confidence            6 332  4556777888887888776654

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=90.63  E-value=0.91  Score=46.97  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=66.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~  202 (535)
                      ..+.++++|+-.|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    .| . .-+.....+..+ +.  .. .
T Consensus       172 ~~~~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~----~g-~-~~v~~~~~~~~~~i~~~~~-~  242 (375)
T cd08282         172 AGVQPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAES----IG-A-IPIDFSDGDPVEQILGLEP-G  242 (375)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-C-eEeccCcccHHHHHHHhhC-C
Confidence            345788999999999999999999983  565 79999999888776654    44 1 111111111111 11  11 3


Q ss_pred             CcceEEeccccCC-----hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGN-----EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm-----~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+|+|+-...-..     ...+...+..+.+.++++|.++.-
T Consensus       243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  284 (375)
T cd08282         243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV  284 (375)
T ss_pred             CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence            5898885422210     013445688889999999998653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=90.60  E-value=2.3  Score=41.38  Aligned_cols=101  Identities=18%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|..|| +|.+|.+......  ..|.+|+.++.+++..+.... .....+..+-.+.+...+..+   .....|+||++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~--~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e---a~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLA--KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE---AAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH--hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH---HHhcCCEEEEE
Confidence            4799997 8988776444322  256789999999987655433 222222001112222222222   23468999996


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      .-.   ..-..++..+...++ + .+++.-..|
T Consensus        76 vp~---~~~~~~l~~l~~~l~-~-~vvI~~~ng  103 (219)
T TIGR01915        76 VPW---DHVLKTLESLRDELS-G-KLVISPVVP  103 (219)
T ss_pred             CCH---HHHHHHHHHHHHhcc-C-CEEEEeccC
Confidence            333   345566666666554 3 555555455

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=90.56  E-value=0.89  Score=49.69  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             CEEEEEccCCChhhHHHHH---hh--cCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          133 KKVAFVGSGPMPLTSIILA---SQ--HMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LA---k~--~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      +||..||.|.. +|..++-   +.  .+++++|+=+|||+++++.    +++.+++.| .  .++|...  ++....+.+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g-~--~~~v~~T--tdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY-P--EIKFVYT--TDPEEAFTD   74 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CeEEEEE--CCHHHHhCC
Confidence            58999999975 8755442   21  2568999999999998887    555556666 2  4555432  233445577


Q ss_pred             cceEEeccccC
Q 041205          204 YDCIILAALAG  214 (535)
Q Consensus       204 FDvVfiaALVg  214 (535)
                      .|+||....+|
T Consensus        75 ADfVi~~irvG   85 (437)
T cd05298          75 ADFVFAQIRVG   85 (437)
T ss_pred             CCEEEEEeeeC
Confidence            99999998886

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.52  E-value=1.1  Score=37.30  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCC---cEEE-EEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKS---THFD-NIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~G---a~Vt-GIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ||.+||+|-+|.+-..  .....|   .+|. +.+.+++..+...   ++.|     +.+...+..++.   ...|+||+
T Consensus         1 kI~iIG~G~mg~al~~--~l~~~g~~~~~v~~~~~r~~~~~~~~~---~~~~-----~~~~~~~~~~~~---~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALAR--GLLASGIKPHEVIIVSSRSPEKAAELA---KEYG-----VQATADDNEEAA---QEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHH--HHHHTTS-GGEEEEEEESSHHHHHHHH---HHCT-----TEEESEEHHHHH---HHTSEEEE
T ss_pred             CEEEECCCHHHHHHHH--HHHHCCCCceeEEeeccCcHHHHHHHH---Hhhc-----cccccCChHHhh---ccCCEEEE
Confidence            6899999976655332  211245   7888 5599998765443   3444     234333433333   35799999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      + ...  ..-..++..+ ....+|.+|+-
T Consensus        68 a-v~p--~~~~~v~~~i-~~~~~~~~vis   92 (96)
T PF03807_consen   68 A-VKP--QQLPEVLSEI-PHLLKGKLVIS   92 (96)
T ss_dssp             --S-G--GGHHHHHHHH-HHHHTTSEEEE
T ss_pred             E-ECH--HHHHHHHHHH-hhccCCCEEEE
Confidence            6 332  5678888888 77888887764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=2.9  Score=43.63  Aligned_cols=109  Identities=19%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC---CcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCC-
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK---STHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGE-  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~---Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~-  203 (535)
                      +..+....|+|||.---|.+++-. +.+   -.+.+-||+|...+.-.-+ +.....  +-.|.=++||-...+..+.. 
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda-~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~  152 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDA-LAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRG  152 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHH-hhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCC
Confidence            466899999999988888887743 211   2689999999998865444 444432  23577788886543333322 


Q ss_pred             --cceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 --YDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 --FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ==++|+-+..|-  ..+...+|.++...|+||-.+++--
T Consensus       153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence              335667777774  6788889999999999999888743

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=90.39  E-value=1.6  Score=47.04  Aligned_cols=72  Identities=19%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++++|+.||+|++|...+..+..  .|. +|+.++.+++..   ..+....| .    .++.  ..+......++|+||
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~--~G~~~V~v~~r~~~ra---~~la~~~g-~----~~~~--~~~~~~~l~~aDvVI  247 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAE--KGVRKITVANRTLERA---EELAEEFG-G----EAIP--LDELPEALAEADIVI  247 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHH--CCCCeEEEEeCCHHHH---HHHHHHcC-C----cEee--HHHHHHHhccCCEEE
Confidence            567999999999988877766552  454 899999998653   34444555 1    1211  112223345799999


Q ss_pred             ecccc
Q 041205          209 LAALA  213 (535)
Q Consensus       209 iaALV  213 (535)
                      .+...
T Consensus       248 ~aT~s  252 (423)
T PRK00045        248 SSTGA  252 (423)
T ss_pred             ECCCC
Confidence            87543

>PLN02712 arogenate dehydrogenase

Probab=90.28  E-value=1.1  Score=51.44  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      +..++|..||+|-+|.+-.....  ..|.+|+++|.+... +    .+...| +    .+ ..|..++..  ...|+|++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~----~A~~~G-v----~~-~~d~~e~~~--~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-L----AARSLG-V----SF-FLDPHDLCE--RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-H----HHHHcC-C----EE-eCCHHHHhh--cCCCEEEE
Confidence            46789999999988776433323  246799999998543 2    233456 2    22 233322211  34799999


Q ss_pred             ccccCChhhHHHHHHHHH-hhcccCeEEE
Q 041205          210 AALAGNEEEKAKILGHIR-KYMKEGGVLL  237 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~-rvLKPGGvLV  237 (535)
                      +.-.   ..-..++..+. ..++||.+|+
T Consensus       115 avP~---~~~~~vl~~l~~~~l~~g~iVv  140 (667)
T PLN02712        115 CTSI---ISTENVLKSLPLQRLKRNTLFV  140 (667)
T ss_pred             cCCH---HHHHHHHHhhhhhcCCCCeEEE
Confidence            7444   45677777775 5688887443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.25  E-value=1.1  Score=51.63  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~e  196 (535)
                      ++|.-||+|.+|-.--. +|.  ..|..|+-+|+|+++++.++..+.+       .|.+        -.+|++. .|.  
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~--  379 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY--  379 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence            68999999998876433 332  2588999999999999998766532       1211        1345543 222  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        ..+.+.|+|+=+ .....+-|.++|.++-++++|+.+|...+.
T Consensus       380 --~~~~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS  421 (699)
T TIGR02440       380 --RGFKDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIFASNTS  421 (699)
T ss_pred             --HHhccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEEEeCCC
Confidence              234678999864 333358899999999999999999988663

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.17  E-value=3.1  Score=42.78  Aligned_cols=75  Identities=19%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|.-||+|.+|.+....+.  ..|  .+|+.+|++++.. ..+..+-.........+.+..++..    ++.++|+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~----~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS----DCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH----HhCCCCEEEE
Confidence            37999999988888766544  234  4899999988753 3333333322211234455544432    3467999998


Q ss_pred             cccc
Q 041205          210 AALA  213 (535)
Q Consensus       210 aALV  213 (535)
                      .+..
T Consensus        75 tag~   78 (306)
T cd05291          75 TAGA   78 (306)
T ss_pred             ccCC
Confidence            8766

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=90.13  E-value=0.99  Score=41.94  Aligned_cols=91  Identities=16%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||.|.+|..   ||+++ ..|..|+++|++++..+...+    .|     +. .+.+..++.   ...|+||+. 
T Consensus         2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~-~~~s~~e~~---~~~dvvi~~-   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AE-VADSPAEAA---EQADVVILC-   64 (163)
T ss_dssp             BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EE-EESSHHHHH---HHBSEEEE--
T ss_pred             CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hh-hhhhhhhHh---hcccceEee-
Confidence            58999999977654   33332 258899999999977654432    24     12 233443333   246999974 


Q ss_pred             ccCChhhHHHHHHH--HHhhcccCeEEEEEcc
Q 041205          212 LAGNEEEKAKILGH--IRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 LVgm~edK~~VL~e--L~rvLKPGGvLVvRsa  241 (535)
                      +.. ...-..++..  +...|++|.+++--+.
T Consensus        65 v~~-~~~v~~v~~~~~i~~~l~~g~iiid~sT   95 (163)
T PF03446_consen   65 VPD-DDAVEAVLFGENILAGLRPGKIIIDMST   95 (163)
T ss_dssp             SSS-HHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred             ccc-chhhhhhhhhhHHhhccccceEEEecCC
Confidence            221 1445677887  8889999888876553

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=90.12  E-value=0.74  Score=48.24  Aligned_cols=92  Identities=20%  Similarity=0.264  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+++|..||+|.+|.+...++.  ..|.+|+++|.++....         + .   +++ ..+..   .-+...|+|++.
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~-~---~~~-~~~l~---ell~~aDiVil~  205 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D-F---LTY-KDSVK---EAIKDADIISLH  205 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h-h---hhc-cCCHH---HHHhcCCEEEEe
Confidence            5789999999999887555544  36899999999975421         1 0   111 12222   223568999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      .-.. .+-+.-+...+...|+||++| +..+.|
T Consensus       206 lP~t-~~t~~li~~~~l~~mk~gavl-IN~aRG  236 (330)
T PRK12480        206 VPAN-KESYHLFDKAMFDHVKKGAIL-VNAARG  236 (330)
T ss_pred             CCCc-HHHHHHHhHHHHhcCCCCcEE-EEcCCc
Confidence            4442 123556677888999998865 444555

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=90.12  E-value=1.1  Score=48.73  Aligned_cols=76  Identities=24%  Similarity=0.391  Sum_probs=53.8

Q ss_pred             CEEEEEccCCChhhHHHHHh----h-cCCCcEEEEEeCChhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          133 KKVAFVGSGPMPLTSIILAS----Q-HMKSTHFDNIDIDETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk----~-~l~Ga~VtGIDIDpeAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      .+|..||.|.. +|.-++-.    . -+++.+|+-+|+|+++++.    +++++++.| .  .++|...  ++....+.+
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-~--~~~v~~t--tD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-A--DIKFEKT--MDLEDAIID   74 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-C--CeEEEEe--CCHHHHhCC
Confidence            48999999975 88655421    1 2678999999999988886    666677777 2  4555432  223345567


Q ss_pred             cceEEeccccC
Q 041205          204 YDCIILAALAG  214 (535)
Q Consensus       204 FDvVfiaALVg  214 (535)
                      .|+||....+|
T Consensus        75 ADfVi~~irvG   85 (425)
T cd05197          75 ADFVINQFRVG   85 (425)
T ss_pred             CCEEEEeeecC
Confidence            99999998886

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=90.02  E-value=1.1  Score=44.86  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=59.8

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccCC-
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEKL-  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~dL-  201 (535)
                      ..+.++++||-.|. |++|..++.+|++  .|.+|+.+..+++-.+..+..++++| ...-+.....   +..+....+ 
T Consensus       142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i~~~~  218 (341)
T cd08290         142 VKLQPGDWVIQNGANSAVGQAVIQLAKL--LGIKTINVVRDRPDLEELKERLKALG-ADHVLTEEELRSLLATELLKSAP  218 (341)
T ss_pred             cccCCCCEEEEccchhHHHHHHHHHHHH--cCCeEEEEEcCCCcchhHHHHHHhcC-CCEEEeCcccccccHHHHHHHHc
Confidence            34578899999985 8999999999994  47777776655522222333344456 2111111111   111111111 


Q ss_pred             -CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 -GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 -~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       +.+|+|+-.  +|   .  ..+..+.+.++++|.++.-.
T Consensus       219 ~~~~d~vld~--~g---~--~~~~~~~~~l~~~G~~v~~g  251 (341)
T cd08290         219 GGRPKLALNC--VG---G--KSATELARLLSPGGTMVTYG  251 (341)
T ss_pred             CCCceEEEEC--cC---c--HhHHHHHHHhCCCCEEEEEe
Confidence             158988843  22   1  13446778899999988754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK13243 glyoxylate reductase; Reviewed

Probab=90.00  E-value=0.74  Score=48.17  Aligned_cols=94  Identities=17%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|..||.|.+|......++  ..|.+|+++|.++....     ....|     +.+  .+..++   +...|+|++
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~el---l~~aDiV~l  210 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLEEL---LRESDFVSL  210 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHHHH---HhhCCEEEE
Confidence            35899999999999887666555  35889999999875421     12333     122  233222   356799998


Q ss_pred             ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205          210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..-..  ++-..++ .+....||||++|+- .+.|
T Consensus       211 ~lP~t--~~T~~~i~~~~~~~mk~ga~lIN-~aRg  242 (333)
T PRK13243        211 HVPLT--KETYHMINEERLKLMKPTAILVN-TARG  242 (333)
T ss_pred             eCCCC--hHHhhccCHHHHhcCCCCeEEEE-CcCc
Confidence            65442  3334444 577888999887754 3444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=89.99  E-value=0.44  Score=45.05  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|.-||+|.+|-....+++  ..|++|+++|.+...-.    .....+     +++  .+..++.   ...|+|++
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~ell---~~aDiv~~   97 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDELL---AQADIVSL   97 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHHH---HH-SEEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhhc---chhhhhhh
Confidence            46899999999999988888877  36899999999998765    222333     222  2333332   45799987


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..-..- +.+.-+=++....||||++|| ..+.|
T Consensus        98 ~~plt~-~T~~li~~~~l~~mk~ga~lv-N~aRG  129 (178)
T PF02826_consen   98 HLPLTP-ETRGLINAEFLAKMKPGAVLV-NVARG  129 (178)
T ss_dssp             -SSSST-TTTTSBSHHHHHTSTTTEEEE-ESSSG
T ss_pred             hhcccc-ccceeeeeeeeeccccceEEE-eccch
Confidence            644310 111122234456899988764 45555

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=89.99  E-value=2.3  Score=42.51  Aligned_cols=96  Identities=23%  Similarity=0.322  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .+.++.+|+-.|+ |++|..++.+|++  .|.+|++++.+++..+.++++ ...- +..+ .+    ..++. .++.+|+
T Consensus       159 ~~~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~~~-~~~~-~~----~~~v~-~~~~~d~  228 (334)
T PRK13771        159 GVKKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-ADYV-IVGS-KF----SEEVK-KIGGADI  228 (334)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HHHh-cCch-hH----HHHHH-hcCCCcE
Confidence            4578899999999 8999999999994  589999999999998888776 2111 1111 11    11111 1235888


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++-.  ++   .  ..+..+.+.+++||.++.-.
T Consensus       229 ~ld~--~g---~--~~~~~~~~~l~~~G~~v~~g  255 (334)
T PRK13771        229 VIET--VG---T--PTLEESLRSLNMGGKIIQIG  255 (334)
T ss_pred             EEEc--CC---h--HHHHHHHHHHhcCCEEEEEe
Confidence            8842  32   1  24678888999999988754

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.95  E-value=1.8  Score=43.78  Aligned_cols=97  Identities=24%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCCCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL~~FDv  206 (535)
                      .+.++.+|+-.|+|++|..++.+|+.  .|.+|++++.+++..+.+++    .| . +.+ +...+ .+. .....++|+
T Consensus       166 ~~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~-~~v-i~~~~-~~~~~~~~~~~d~  235 (337)
T cd05283         166 GVGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALK----LG-A-DEF-IATKD-PEAMKKAAGSLDL  235 (337)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-C-cEE-ecCcc-hhhhhhccCCceE
Confidence            35788999999999999999999994  58899999999988777653    34 1 111 11111 000 111246999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-....      ...+..+.+.|+++|.++.-.
T Consensus       236 v~~~~g~------~~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         236 IIDTVSA------SHDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             EEECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence            9853222      124677788999999888754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.92  E-value=1.5  Score=44.77  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             EEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHH-HhhcCC-cCCCeEEEE-ccccccccCCCCcceEEec
Q 041205          135 VAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRI-VSSDDE-IEKRMKFLT-CDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       135 VLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~l-i~~lG~-Ls~rI~Fi~-GDA~el~~dL~~FDvVfia  210 (535)
                      |..||+|.+|.+.......  .+. +|+-+|+|++.. .+... +...+. .....++.. +|.    .++.+.|+|++.
T Consensus         1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence            4679999988886554331  332 999999998753 33332 111111 112344442 442    234678999986


Q ss_pred             cccC------------C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAG------------N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVg------------m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +...            . .+-+..++..+.+...++-++++-|+
T Consensus        74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP  117 (300)
T cd01339          74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP  117 (300)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            5431            1 24466788888886644444455444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=89.84  E-value=0.42  Score=53.93  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-----------------HHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-----------------ANNLARRIVSSDDEIEKRMKFLTCD  193 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-----------------AIelAR~li~~lG~Ls~rI~Fi~GD  193 (535)
                      .+++|+-||+||.|+++...+.+  .|.+|+-+|.++.                 .++.-.+.+++.|     ++|..+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~  398 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELNC  398 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECCC
Confidence            57899999999999999887774  6888999997643                 3444445566666     4554332


Q ss_pred             cc----ccccCCCCcceEEecccc
Q 041205          194 IM----EVKEKLGEYDCIILAALA  213 (535)
Q Consensus       194 A~----el~~dL~~FDvVfiaALV  213 (535)
                      ..    .+......||.||++...
T Consensus       399 ~v~~~i~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        399 EVGKDISLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             EeCCcCCHHHHHhcCCEEEEeCCC
Confidence            11    111112469999986543

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.73  E-value=0.58  Score=49.90  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-----ccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-----DIM  195 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-----DA~  195 (535)
                      ++......+.+++.|+-+|.|..|++.+.-|+ ....++|+|||++++-.+.|+++    | .   .+|+.-     .+.
T Consensus       182 GAa~~~Akv~~GstvAVfGLG~VGLav~~Gak-a~GAsrIIgvDiN~~Kf~~ak~f----G-a---Te~iNp~d~~~~i~  252 (375)
T KOG0022|consen  182 GAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAK-AAGASRIIGVDINPDKFEKAKEF----G-A---TEFINPKDLKKPIQ  252 (375)
T ss_pred             hhhhhhcccCCCCEEEEEecchHHHHHHHhHH-hcCcccEEEEecCHHHHHHHHhc----C-c---ceecChhhccccHH
Confidence            33334456789999999999999999999999 45557899999999999998865    4 1   122221     122


Q ss_pred             ccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEE
Q 041205          196 EVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVR  239 (535)
Q Consensus       196 el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvR  239 (535)
                      ++..+.  +++|+-|=.  .|    ...++.+...-.+.| |.-++-
T Consensus       253 evi~EmTdgGvDysfEc--~G----~~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  253 EVIIEMTDGGVDYSFEC--IG----NVSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             HHHHHHhcCCceEEEEe--cC----CHHHHHHHHHHhhcCCCeEEEE
Confidence            222222  458877732  12    356677777777887 655443

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=89.73  E-value=2.5  Score=41.67  Aligned_cols=98  Identities=11%  Similarity=0.075  Sum_probs=65.3

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--c-ccc-ccc--
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--D-IME-VKE--  199 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--D-A~e-l~~--  199 (535)
                      ..+.++.+||-.| +|++|..++.+|+.  .|+.++.++.+++..+.+++    .| .  ...+...  | ..+ +..  
T Consensus       136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~--~~~~~~~~~~~~~~~~~~~~  206 (334)
T PTZ00354        136 GDVKKGQSVLIHAGASGVGTAAAQLAEK--YGAATIITTSSEEKVDFCKK----LA-A--IILIRYPDEEGFAPKVKKLT  206 (334)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-C--cEEEecCChhHHHHHHHHHh
Confidence            4557889999999 78999999999984  67888889989887766643    55 2  1112111  1 111 111  


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...++|+|+-. . +     ...+..+.+.|+++|.++.-.
T Consensus       207 ~~~~~d~~i~~-~-~-----~~~~~~~~~~l~~~g~~i~~~  240 (334)
T PTZ00354        207 GEKGVNLVLDC-V-G-----GSYLSETAEVLAVDGKWIVYG  240 (334)
T ss_pred             CCCCceEEEEC-C-c-----hHHHHHHHHHhccCCeEEEEe
Confidence            12358999853 2 2     246778888999999998743

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=89.69  E-value=1.7  Score=43.13  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-ccccccCCCCc
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-IMEVKEKLGEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A~el~~dL~~F  204 (535)
                      ..+.++.+|+-+|+ |++|..++.+|+.  .|++|++++.+        +.++.+| ...  .+-..+ ...+......+
T Consensus       158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~G~~v~~~~~~--------~~~~~~g-~~~--~~~~~~~~~~l~~~~~~~  224 (325)
T cd08264         158 AGLGPGETVVVFGASGNTGIFAVQLAKM--MGAEVIAVSRK--------DWLKEFG-ADE--VVDYDEVEEKVKEITKMA  224 (325)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHH--cCCeEEEEeHH--------HHHHHhC-CCe--eecchHHHHHHHHHhCCC
Confidence            34678999999997 9999999999994  57889888621        3334456 211  111111 11111111468


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-.  .+   .  ..+....+.|+++|.++.-.
T Consensus       225 d~vl~~--~g---~--~~~~~~~~~l~~~g~~v~~g  253 (325)
T cd08264         225 DVVINS--LG---S--SFWDLSLSVLGRGGRLVTFG  253 (325)
T ss_pred             CEEEEC--CC---H--HHHHHHHHhhccCCEEEEEe
Confidence            998743  32   2  47888899999999998754

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=89.68  E-value=2.8  Score=45.60  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=52.5

Q ss_pred             CEEEEEccCCChhhHHHHHh-----hcCCCcEEEEEeCC-hhHHHH----HHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          133 KKVAFVGSGPMPLTSIILAS-----QHMKSTHFDNIDID-ETANNL----ARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk-----~~l~Ga~VtGIDID-peAIel----AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      .+|..||.|.. +|..++-.     ..+++.+|+-+|+| ++.++.    +++.+++.|   ..++|...  .+....+.
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~---~~~~v~~t--~d~~~al~   74 (419)
T cd05296           1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG---LPIKVHLT--TDRREALE   74 (419)
T ss_pred             CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhC
Confidence            48999999975 77655432     12567999999999 788755    666777777   24566533  12233446


Q ss_pred             CcceEEeccccC
Q 041205          203 EYDCIILAALAG  214 (535)
Q Consensus       203 ~FDvVfiaALVg  214 (535)
                      +-|+|++...+|
T Consensus        75 gadfVi~~~~vg   86 (419)
T cd05296          75 GADFVFTQIRVG   86 (419)
T ss_pred             CCCEEEEEEeeC
Confidence            679999988885

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=89.68  E-value=1.2  Score=46.30  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=39.7

Q ss_pred             CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHH
Q 041205          128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARR  175 (535)
Q Consensus       128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~  175 (535)
                      .+.++.+|+-.|+ |++|..++.+|+.  .|+.++.++.+++..+.+++
T Consensus       190 ~~~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~  236 (393)
T cd08246         190 TVKPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRA  236 (393)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH
Confidence            4567899999997 9999999999994  68999999999998888776

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.66  E-value=1.9  Score=44.13  Aligned_cols=102  Identities=21%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHH---Hhhc-CC-cCCCeEEEEccccccccCCCCcce
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRI---VSSD-DE-IEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~l---i~~l-G~-Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ++|..||+|++|.+--. |++   .|..|+-++.+++.++.-++.   .... |. +..++.+. .|..+..  .+++|+
T Consensus         1 MkI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~Dl   74 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL--SDNATC   74 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH--hCCCCE
Confidence            47999999998875433 334   577899999998766544431   1111 10 12233332 2322211  146899


Q ss_pred             EEeccccCChhhHHHHHHHHHh-hcccCeEEEEEccccc
Q 041205          207 IILAALAGNEEEKAKILGHIRK-YMKEGGVLLVRSAKGA  244 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~r-vLKPGGvLVvRsa~Gl  244 (535)
                      ||++ ...  .+-..+++.+.. .++++..+++- ..|+
T Consensus        75 iiia-vks--~~~~~~l~~l~~~~l~~~~~vv~~-~nGi  109 (326)
T PRK14620         75 IILA-VPT--QQLRTICQQLQDCHLKKNTPILIC-SKGI  109 (326)
T ss_pred             EEEE-eCH--HHHHHHHHHHHHhcCCCCCEEEEE-EcCe
Confidence            9985 442  356678888887 88887755542 3454

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.57  E-value=4.1  Score=38.50  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=61.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----------
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----------  199 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----------  199 (535)
                      .+++|+-.|++  |.....+++.+ -.|.+|++++.+++..+...+.....+    ++.++.+|..+...          
T Consensus         4 ~~~~vlItGa~--g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          4 KGKKVAIIGVS--EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG----NIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CCcEEEEECCC--chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEECCCCCHHHHHHHHHHHHH
Confidence            46799999985  23333444432 368999999999876654433333222    57888999874211          


Q ss_pred             CCCCcceEEeccccCC---hhhH--------------HHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGN---EEEK--------------AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm---~edK--------------~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+..|.|+..+....   ..+.              ..+++.+.+.+++||.+++-+
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            1234687776543210   1111              133556666777787776655

>PRK08324 short chain dehydrogenase; Validated

Probab=89.57  E-value=3.3  Score=47.10  Aligned_cols=104  Identities=18%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----------
Q 041205          131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----------  199 (535)
Q Consensus       131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----------  199 (535)
                      .+++||-.|+ |.+|........  ..|++|+.+|++++..+.....+...    .++.++.+|+.+...          
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5689999994 555554333222  25899999999998766554433221    368888899865221          


Q ss_pred             CCCCcceEEeccccCC---hh----------------hHHHHHHHHHhhccc---CeEEEEEc
Q 041205          200 KLGEYDCIILAALAGN---EE----------------EKAKILGHIRKYMKE---GGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm---~e----------------dK~~VL~eL~rvLKP---GGvLVvRs  240 (535)
                      ..+++|+|+..+....   ..                ....+++.+.+.|++   ||.|++-+
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            1346899987655321   00                134567777888877   67676655

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.47  E-value=2.1  Score=37.19  Aligned_cols=87  Identities=17%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+++||-||.|+.+..-+...-  -.|++|+-|..+.+..+         +    .+++..-..   ..++.++|+||.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~~~~~---------~----~i~~~~~~~---~~~l~~~~lV~~   66 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLL--EAGAKVTVISPEIEFSE---------G----LIQLIRREF---EEDLDGADLVFA   66 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHC--CCTBEEEEEESSEHHHH---------T----SCEEEESS----GGGCTTESEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEECCchhhhh---------h----HHHHHhhhH---HHHHhhheEEEe
Confidence            35799999999987776665543  46899999998871111         3    456655443   345678999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +..-      ..+-+.+++..+.-|+++-..
T Consensus        67 at~d------~~~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   67 ATDD------PELNEAIYADARARGILVNVV   91 (103)
T ss_dssp             -SS-------HHHHHHHHHHHHHTTSEEEET
T ss_pred             cCCC------HHHHHHHHHHHhhCCEEEEEC
Confidence            6332      334455555555455555443

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=89.45  E-value=2.1  Score=42.58  Aligned_cols=97  Identities=11%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---cc--C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~--d  200 (535)
                      ..+.++++|+-+| +|++|..++.+|+.  .|.+|++++.+++..+.+++    +| . +.  ++..+-.+.   ..  .
T Consensus       135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~--v~~~~~~~~~~~~~~~~  204 (329)
T cd08250         135 GEMKSGETVLVTAAAGGTGQFAVQLAKL--AGCHVIGTCSSDEKAEFLKS----LG-C-DR--PINYKTEDLGEVLKKEY  204 (329)
T ss_pred             cCCCCCCEEEEEeCccHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHH----cC-C-ce--EEeCCCccHHHHHHHhc
Confidence            3567899999999 68999999999994  58899999988877665543    45 2 11  111111110   00  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..++|+|+-.  +|     ...+..+.+.++++|.++.-.
T Consensus       205 ~~~vd~v~~~--~g-----~~~~~~~~~~l~~~g~~v~~g  237 (329)
T cd08250         205 PKGVDVVYES--VG-----GEMFDTCVDNLALKGRLIVIG  237 (329)
T ss_pred             CCCCeEEEEC--Cc-----HHHHHHHHHHhccCCeEEEEe
Confidence            1458988853  32     246788889999999988654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=89.44  E-value=1.8  Score=43.81  Aligned_cols=93  Identities=9%  Similarity=0.097  Sum_probs=53.4

Q ss_pred             CEEEEEccCCChhhHHHH-Hhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIIL-ASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L-Ak~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+|.+||||.+|.+-..- .+.. .+..+|+.++.+++.  ..+.+....+    .+.+ ..|..+.   ....|+||++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~--~~~~l~~~~~----~~~~-~~~~~e~---~~~aDvVila   71 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNE--HFNQLYDKYP----TVEL-ADNEAEI---FTKCDHSFIC   71 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHH--HHHHHHHHcC----CeEE-eCCHHHH---HhhCCEEEEe
Confidence            479999999988754332 2210 122579999987642  2233333322    1222 2343222   2468999985


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .-.   ..-..++.++.+.+++|..|+.
T Consensus        72 vpp---~~~~~vl~~l~~~l~~~~~ivS   96 (277)
T PRK06928         72 VPP---LAVLPLLKDCAPVLTPDRHVVS   96 (277)
T ss_pred             cCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence            332   3456778888888887765554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.41  E-value=0.99  Score=46.42  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|+.||.|.+|.+....++  ..|++|+.+|.+++..+.+    ...| .    ..+.  ..++...+.++|+|+.
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~----~~~g-~----~~~~--~~~l~~~l~~aDiVin  215 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARI----TEMG-L----IPFP--LNKLEEKVAEIDIVIN  215 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHH----HHCC-C----eeec--HHHHHHHhccCCEEEE
Confidence            35799999999988887777666  3578999999998765443    2334 2    1111  1222333467999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ..-.++      +-......|+||++++
T Consensus       216 t~P~~i------i~~~~l~~~k~~aliI  237 (287)
T TIGR02853       216 TIPALV------LTADVLSKLPKHAVII  237 (287)
T ss_pred             CCChHH------hCHHHHhcCCCCeEEE
Confidence            643322      1123456788875543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=89.37  E-value=0.91  Score=47.28  Aligned_cols=92  Identities=16%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      .+|.|||-|-+|.+   ||+++ -.|..|+..|++++..   .+.+...|.     ..... ..+   .-...|+||+. 
T Consensus         1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a~s-~~e---aa~~aDvVitm-   64 (286)
T COG2084           1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVAAS-PAE---AAAEADVVITM-   64 (286)
T ss_pred             CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----cccCC-HHH---HHHhCCEEEEe-
Confidence            48999999998877   45543 3578999999998873   233334451     11111 111   11457999973 


Q ss_pred             ccCChhhHHHHH---HHHHhhcccCeEEEEEcc
Q 041205          212 LAGNEEEKAKIL---GHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 LVgm~edK~~VL---~eL~rvLKPGGvLVvRsa  241 (535)
                       +...++-..++   .-+...++||.++|--+.
T Consensus        65 -v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST   96 (286)
T COG2084          65 -LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST   96 (286)
T ss_pred             -cCCHHHHHHHHhCccchhhcCCCCCEEEECCC
Confidence             32225566666   467888999999887663

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.36  E-value=1.2  Score=47.78  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ...+|..||. |-+|-+--...+. ..+.+|+|+|.+.            .+ .        .+.   .......|+|++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~-~~~~~V~g~D~~d------------~~-~--------~~~---~~~v~~aDlVil   57 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRT-RMQLEVIGHDPAD------------PG-S--------LDP---ATLLQRADVLIF   57 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh-cCCCEEEEEcCCc------------cc-c--------CCH---HHHhcCCCEEEE
Confidence            3569999999 9887764444442 2478999999841            11 0        011   112356899999


Q ss_pred             ccccCChhhHHHHHHHHHhh---cccCeEEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKY---MKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rv---LKPGGvLVvR  239 (535)
                      +.-+   ..-.+++.++.+.   |+||.+| ++
T Consensus        58 avPv---~~~~~~l~~l~~~~~~l~~~~iV-tD   86 (370)
T PRK08818         58 SAPI---RHTAALIEEYVALAGGRAAGQLW-LD   86 (370)
T ss_pred             eCCH---HHHHHHHHHHhhhhcCCCCCeEE-EE
Confidence            8777   5778899998876   6886655 44

>PLN02712 arogenate dehydrogenase

Probab=89.35  E-value=26  Score=40.51  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+++|.+||.|-+|.+-.....  ..|.+|+++|.++.. +.    +...| .    .+ ..|..++..  ...|+||+
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----a~~~G-v----~~-~~~~~el~~--~~aDvVIL  431 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMV--KQGHTVLAYSRSDYS-DE----AQKLG-V----SY-FSDADDLCE--EHPEVILL  431 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHH--HCcCEEEEEECChHH-HH----HHHcC-C----eE-eCCHHHHHh--cCCCEEEE
Confidence            46799999999988775433322  246789999999643 22    33456 2    22 234333221  24799999


Q ss_pred             ccccCChhhHHHHHHHHHh-hcccCeEEE
Q 041205          210 AALAGNEEEKAKILGHIRK-YMKEGGVLL  237 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~r-vLKPGGvLV  237 (535)
                      +.-.   ..-..++.++.. .++||.+|+
T Consensus       432 avP~---~~~~~vi~~l~~~~lk~g~ivv  457 (667)
T PLN02712        432 CTSI---LSTEKVLKSLPFQRLKRSTLFV  457 (667)
T ss_pred             CCCh---HHHHHHHHHHHHhcCCCCcEEE
Confidence            7554   455677777764 578876554

>cd05281 TDH Threonine dehydrogenase

Probab=89.34  E-value=1.3  Score=44.67  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDv  206 (535)
                      .++.+||-.|+|++|..++.+|+.  .|. +|++++-+++..+.+++    +| ...-+.....+...+.  ....++|+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~vd~  234 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKA--AGASLVIASDPNPYRLELAKK----MG-ADVVINPREEDVVEVKSVTDGTGVDV  234 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-cceeeCcccccHHHHHHHcCCCCCCE
Confidence            578999999999999999999994  566 78899888877766664    44 2111111111111011  11235999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-...-      ......+.+.|+++|.++.-.
T Consensus       235 vld~~g~------~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         235 VLEMSGN------PKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             EEECCCC------HHHHHHHHHHhccCCEEEEEc
Confidence            9864221      345777788999999988653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK05442 malate dehydrogenase; Provisional

Probab=89.31  E-value=1.7  Score=45.65  Aligned_cols=107  Identities=13%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcc-CCChhhHHHHH-hhcCCC----cEEEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          130 AQLKKVAFVGS-GPMPLTSIILA-SQHMKS----THFDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       130 ~~pkRVLeIGS-GplPlTAI~LA-k~~l~G----a~VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      +.|.+|.-||+ |.+|.+..+.. ..-+-+    ..++=+|+++.   +-..|..+......+..++.+..+|-    .+
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y----~~   77 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPN----VA   77 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChH----HH
Confidence            56889999998 99999865532 211111    27999999653   45566666554411223455544432    34


Q ss_pred             CCCcceEEecccc----CC-h----hhHHHHHHHHH----hhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALA----GN-E----EEKAKILGHIR----KYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALV----gm-~----edK~~VL~eL~----rvLKPGGvLVvRs  240 (535)
                      +.+.|+|++.+.+    |+ .    ..-.++++++.    ++-.|.|++++-+
T Consensus        78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            5678999987775    33 1    22234444444    4444678777754

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=89.14  E-value=2  Score=46.27  Aligned_cols=73  Identities=18%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ..++++|+.||+|++|.........  .| .+|+.++.+++.   +..+.+..|.  .   .+.  ..++.....++|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~--~G~~~V~v~~rs~~r---a~~la~~~g~--~---~i~--~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLR--KGVGKILIANRTYER---AEDLAKELGG--E---AVK--FEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHH--CCCCEEEEEeCCHHH---HHHHHHHcCC--e---Eee--HHHHHHHHhhCCEE
Confidence            3568999999999998877766552  45 789999999864   3444445551  1   111  12223334579999


Q ss_pred             Eecccc
Q 041205          208 ILAALA  213 (535)
Q Consensus       208 fiaALV  213 (535)
                      |.+...
T Consensus       245 i~aT~s  250 (417)
T TIGR01035       245 ISSTGA  250 (417)
T ss_pred             EECCCC
Confidence            987443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=89.13  E-value=1.8  Score=45.32  Aligned_cols=106  Identities=12%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             CCCEEEEEcc-CCChhhHHHHHhhcCCCc-----EEEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          131 QLKKVAFVGS-GPMPLTSIILASQHMKST-----HFDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga-----~VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      +|.+|.-||+ |.+|.|..+..-..---.     +++=+|+.+.   +-..|..+......+..++.+..+|    ..++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~   76 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF   76 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence            4789999999 999998766433111123     7999999543   4556666655442122345554433    2355


Q ss_pred             CCcceEEecccc----CC-h----hhHHHHHHHHHhhc---c-cCeEEEEEc
Q 041205          202 GEYDCIILAALA----GN-E----EEKAKILGHIRKYM---K-EGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALV----gm-~----edK~~VL~eL~rvL---K-PGGvLVvRs  240 (535)
                      .+.|+|++.+..    |+ .    ..-.+++.++.+.+   . |.|++++-+
T Consensus        77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            779999988776    33 1    12233444444433   3 577777754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=89.09  E-value=4.7  Score=43.67  Aligned_cols=122  Identities=17%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             HHHHHHHH--HhhCCCCCCEEEEEccCCChhhHHHHHhhcCC--CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          117 KLEYGALI--ENTGVAQLKKVAFVGSGPMPLTSIILASQHMK--STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       117 rlE~~lL~--~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~--Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      +.|...+.  .++++.++.+|||.=.-|+|-|+-++..-|..  .+.|++=|.|+.++..=+.-..++.  +..+.+...
T Consensus       139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~~~~~v~~~  216 (375)
T KOG2198|consen  139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--SPNLLVTNH  216 (375)
T ss_pred             hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--Ccceeeecc
Confidence            34544433  23467999999999999998888777553322  3589999999999887777776655  245566666


Q ss_pred             cccccccCC---------CCcceEEecccc---C-C-----h--------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          193 DIMEVKEKL---------GEYDCIILAALA---G-N-----E--------------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       193 DA~el~~dL---------~~FDvVfiaALV---g-m-----~--------------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+...+...         -.||-|++|.--   | +     +              .--.++|..-.+.||+||.||+-+
T Consensus       217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence            665443321         139999987421   1 1     0              112467888899999999999866

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.08  E-value=4  Score=40.95  Aligned_cols=96  Identities=14%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc---cc-ccCC
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM---EV-KEKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~---el-~~dL  201 (535)
                      ..+.++.+||-.|+ |++|..++.+|++  .|++|++++.+. ..+    .++..| . +  .+...+-.   +. ....
T Consensus       173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~g~~vi~~~~~~-~~~----~~~~~g-~-~--~~~~~~~~~~~~~~~~~~  241 (350)
T cd08274         173 AGVGAGETVLVTGASGGVGSALVQLAKR--RGAIVIAVAGAA-KEE----AVRALG-A-D--TVILRDAPLLADAKALGG  241 (350)
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHh--cCCEEEEEeCch-hhH----HHHhcC-C-e--EEEeCCCccHHHHHhhCC
Confidence            35678999999998 9999999999994  578899988553 333    334556 3 1  22211100   00 1122


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+|+|+-.  ++   .  ..+....+.|+++|.++.-.
T Consensus       242 ~~~d~vi~~--~g---~--~~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         242 EPVDVVADV--VG---G--PLFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             CCCcEEEec--CC---H--HHHHHHHHHhccCCEEEEec
Confidence            459998853  22   1  35788899999999988643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.00  E-value=1.4  Score=47.70  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             CEEEEEccCCChhhHHHH-HhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIIL-ASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L-Ak~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FDvVf  208 (535)
                      ++||-||||-+|-+.... |+  -.+.+|+..|.+.+.++.+....   +   .++++++-|+.+..   .-+.+||+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~---~---~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAELI---G---GKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhhc---c---ccceeEEecccChHHHHHHHhcCCEEE
Confidence            689999999999888776 44  23389999999988877665442   2   27889999987643   2346789999


Q ss_pred             ecccc
Q 041205          209 LAALA  213 (535)
Q Consensus       209 iaALV  213 (535)
                      ..+.-
T Consensus        74 n~~p~   78 (389)
T COG1748          74 NAAPP   78 (389)
T ss_pred             EeCCc
Confidence            76443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=88.97  E-value=1.5  Score=46.49  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=58.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|.+||+|.+|.+-..-.+  -.|..|+..+.+....   ...+...| +    .  ..|..++   ....|+|++
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~--~sG~~Vvv~~r~~~~s---~~~A~~~G-~----~--~~s~~ea---a~~ADVVvL   79 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLR--DSGVDVVVGLREGSKS---WKKAEADG-F----E--VLTVAEA---AKWADVIMI   79 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHH--HCCCEEEEEECCchhh---HHHHHHCC-C----e--eCCHHHH---HhcCCEEEE
Confidence            35789999999988876544333  2567888777664322   22233456 2    1  1243332   245799998


Q ss_pred             ccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205          210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..--   ..-..++ +++...|+||.+|++  .+|
T Consensus        80 aVPd---~~~~~V~~~~I~~~Lk~g~iL~~--a~G  109 (330)
T PRK05479         80 LLPD---EVQAEVYEEEIEPNLKEGAALAF--AHG  109 (330)
T ss_pred             cCCH---HHHHHHHHHHHHhcCCCCCEEEE--CCC
Confidence            5322   2336677 778899999988855  455

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=88.95  E-value=1.3  Score=44.54  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FD  205 (535)
                      .++++|+-.|+|++|..++.+|++  .|. +|++++.+++..+.+++    +| ...-+.....+..+..   ....++|
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----lg-~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKH--VGARHVVITDVNEYRLELARK----MG-ATRAVNVAKEDLRDVMAELGMTEGFD  234 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHHHhcCCCCCC
Confidence            478999999999999999999994  566 68888888877666554    45 2111111111111111   1223589


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-...      ....+..+.+.|+++|.++.-.
T Consensus       235 ~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        235 VGLEMSG------APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             EEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence            8886322      2456788888999999998864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.92  E-value=3.5  Score=40.92  Aligned_cols=85  Identities=18%  Similarity=0.140  Sum_probs=57.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--cc--CCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KE--KLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~--dL~~FDvVf  208 (535)
                      ++|+-||+|.+|++..-...  ..|-.|+.||.|++.++....-  ..+     ...++||+++.  +.  ...++|+|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~~--~~~-----~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLAD--ELD-----THVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhhh--hcc-----eEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            58999999999988554433  2567999999999997663321  122     46778888752  22  235699999


Q ss_pred             eccccCChhhHHHHHHHHHhh
Q 041205          209 LAALAGNEEEKAKILGHIRKY  229 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rv  229 (535)
                      .+...   .+-.-++..+...
T Consensus        72 a~t~~---d~~N~i~~~la~~   89 (225)
T COG0569          72 AATGN---DEVNSVLALLALK   89 (225)
T ss_pred             EeeCC---CHHHHHHHHHHHH
Confidence            87655   2445556666554

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=88.85  E-value=2.1  Score=42.79  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccCCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEKLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~dL~~F  204 (535)
                      +.++++||-.|+|++|..++.+|+.  .| .+|++++.+++..+..+    ..| ...-+.....   ...++. ...++
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~i~~~~-~~~~~  236 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRA--LTPATVIAVDRSEEALKLAE----RLG-ADHVLNASDDVVEEVRELT-GGRGA  236 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHH----HhC-CcEEEcCCccHHHHHHHHh-CCCCC
Confidence            4678999999999999999999984  35 89999999887765554    455 3111111100   011111 11359


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+-...-      ...+....+.|+++|.++.-.
T Consensus       237 dvvld~~g~------~~~~~~~~~~l~~~g~~i~~g  266 (340)
T cd05284         237 DAVIDFVGS------DETLALAAKLLAKGGRYVIVG  266 (340)
T ss_pred             CEEEEcCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence            998864221      346788888999999998754

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=88.74  E-value=2.5  Score=42.11  Aligned_cols=93  Identities=10%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             CCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccc-cc-cCCCCcce
Q 041205          132 LKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIME-VK-EKLGEYDC  206 (535)
Q Consensus       132 pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~e-l~-~dL~~FDv  206 (535)
                      +.+||-.| +|++|..++.+|+. +.|++|+++..+++..+.++    .+| . +.  ++.  .+..+ +. ....++|+
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~-~~G~~vi~~~~~~~~~~~l~----~~g-~-~~--~~~~~~~~~~~i~~~~~~~vd~  219 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQ-LTGLTVIATASRPESQEWVL----ELG-A-HH--VIDHSKPLKAQLEKLGLEAVSY  219 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHHH----HcC-C-CE--EEECCCCHHHHHHHhcCCCCCE
Confidence            88999998 58899999999994 23899999988887655554    356 3 11  111  11111 11 11135998


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+- ..-     ....+..+.+.|+++|+++.-
T Consensus       220 vl~-~~~-----~~~~~~~~~~~l~~~G~~v~~  246 (336)
T TIGR02817       220 VFS-LTH-----TDQHFKEIVELLAPQGRFALI  246 (336)
T ss_pred             EEE-cCC-----cHHHHHHHHHHhccCCEEEEE
Confidence            884 221     134577888899999999864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.70  E-value=2.3  Score=40.23  Aligned_cols=61  Identities=10%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      +++++|-+|+ |.+|........  -.|.+|+.+|.+++..+.+.+.++..|   .++.++.+|+.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~   65 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTD   65 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence            4689999997 555554433222  258899999999987766666665555   467788888653

>PRK07680 late competence protein ComER; Validated

Probab=88.65  E-value=2.1  Score=42.94  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             CEEEEEccCCChhhHHHH-Hhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIIL-ASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L-Ak~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|.+||+|.+|.+-..- .+. +.....|+.+|.+++..+..   ....+    .+.+ ..|..++   ....|+||+.
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~---~~~~~----g~~~-~~~~~~~---~~~aDiVila   69 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHI---KERYP----GIHV-AKTIEEV---ISQSDLIFIC   69 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHH---HHHcC----CeEE-ECCHHHH---HHhCCEEEEe
Confidence            379999999887653322 221 01124789999998765433   23321    1333 2333332   2468999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      . ..  ..-..+++.+...+++|.+++.
T Consensus        70 v-~p--~~~~~vl~~l~~~l~~~~~iis   94 (273)
T PRK07680         70 V-KP--LDIYPLLQKLAPHLTDEHCLVS   94 (273)
T ss_pred             c-CH--HHHHHHHHHHHhhcCCCCEEEE
Confidence            3 32  3456788888888888775543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.62  E-value=0.38  Score=53.50  Aligned_cols=106  Identities=20%  Similarity=0.199  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~F  204 (535)
                      .++-+|||.=|+ .|+=+|..|+ +.+| ..|++-|.|+.+++.-+++++.-+ .++.++-..+|+..+-.    ....|
T Consensus       108 ~~~l~vLealsA-tGlrslRya~-El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  108 EKSLRVLEALSA-TGLRSLRYAK-ELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             cCcchHHHHhhh-hhHHHHHHHH-HhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhcccccccc
Confidence            456788887775 5899999999 4555 579999999999999999999888 78889999999864332    22469


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      |+|=+|-. |   -...+|+...+.++.||+|++-..+
T Consensus       185 DvIDLDPy-G---s~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  185 DVIDLDPY-G---SPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ceEecCCC-C---CccHHHHHHHHHhhcCCEEEEEecc
Confidence            99999844 4   4688999999999999999997654

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=88.57  E-value=1.2  Score=44.70  Aligned_cols=101  Identities=18%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-ccccc--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKE--KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~--dL~  202 (535)
                      ..+.++.+|+-.|+|++|..++.+|++  .|. .|++++.+++..+.+++    +| ...-+....-+. .++..  ...
T Consensus       164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~v~~~~~~~~~~~i~~~~~~~  236 (345)
T cd08287         164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALARE----FG-ATDIVAERGEEAVARVRELTGGV  236 (345)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CceEecCCcccHHHHHHHhcCCC
Confidence            355778999999999999999999994  577 49999999876655554    45 211111111111 11111  123


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+|+-.  ++    ....+..+.+.++++|.++.-.
T Consensus       237 ~~d~il~~--~g----~~~~~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         237 GADAVLEC--VG----TQESMEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             CCCEEEEC--CC----CHHHHHHHHHhhccCCEEEEec
Confidence            58988843  32    2457888899999999998754

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=88.56  E-value=2.3  Score=41.89  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc--cCCC
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK--EKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~--~dL~  202 (535)
                      ..+.++.+|+-.| +|++|..++.+|+.  .|.+|++++.+++..+.+++    .| ...-+.....+..+ +.  ....
T Consensus       138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~  210 (324)
T cd08244         138 ATLTPGDVVLVTAAAGGLGSLLVQLAKA--AGATVVGAAGGPAKTALVRA----LG-ADVAVDYTRPDWPDQVREALGGG  210 (324)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-CCEEEecCCccHHHHHHHHcCCC
Confidence            3457889999999 69999999999994  58999999999988766543    45 21111111111111 11  1113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+|+-.  +|   ..  ......+.|+++|.++.-.
T Consensus       211 ~~d~vl~~--~g---~~--~~~~~~~~l~~~g~~v~~g  241 (324)
T cd08244         211 GVTVVLDG--VG---GA--IGRAALALLAPGGRFLTYG  241 (324)
T ss_pred             CceEEEEC--CC---hH--hHHHHHHHhccCcEEEEEe
Confidence            59999853  32   22  3577889999999988754

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=88.55  E-value=2.7  Score=41.82  Aligned_cols=95  Identities=13%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             CCEEEEEc-cCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cc-cCCCCcceE
Q 041205          132 LKKVAFVG-SGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VK-EKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIG-SGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~-~dL~~FDvV  207 (535)
                      +.+|+-+| +|++|..++.+|+.  .| .+|++++.+++..+.+++    .| ...-+... .+..+ +. ....++|+|
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~-~~~~~~i~~~~~~~~d~v  221 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQ--LTGLTVIATASRPESIAWVKE----LG-ADHVINHH-QDLAEQLEALGIEPVDYI  221 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHH--cCCcEEEEEcCChhhHHHHHh----cC-CcEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence            89999998 68899999999994  57 999999999888766643    55 21111111 01111 11 111358988


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +-.  ++    ....+..+.+.++++|.++.-.
T Consensus       222 l~~--~~----~~~~~~~~~~~l~~~g~~v~~g  248 (336)
T cd08252         222 FCL--TD----TDQHWDAMAELIAPQGHICLIV  248 (336)
T ss_pred             EEc--cC----cHHHHHHHHHHhcCCCEEEEec
Confidence            743  32    1357888899999999998753

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=88.50  E-value=2  Score=42.78  Aligned_cols=97  Identities=8%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------c
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------E  199 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~  199 (535)
                      ..+.++.+|+-.| +|++|..++.+|++  .|++|++++.+++..+.++    ..| ..   .++..+-.+..      .
T Consensus       136 ~~~~~g~~vlI~g~~g~ig~~~~~lak~--~G~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~~~~~~~~~~~~  205 (327)
T PRK10754        136 YEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGSAQKAQRAK----KAG-AW---QVINYREENIVERVKEIT  205 (327)
T ss_pred             cCCCCCCEEEEEeCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----HCC-CC---EEEcCCCCcHHHHHHHHc
Confidence            3457889999985 78899999999994  6899999999988766654    355 21   12211111110      1


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+|+- + ++    . ..+....+.++++|.++.-.
T Consensus       206 ~~~~~d~vl~-~-~~----~-~~~~~~~~~l~~~g~~v~~g  239 (327)
T PRK10754        206 GGKKVRVVYD-S-VG----K-DTWEASLDCLQRRGLMVSFG  239 (327)
T ss_pred             CCCCeEEEEE-C-Cc----H-HHHHHHHHHhccCCEEEEEc
Confidence            1135897773 2 32    1 35677888999999998754

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.46  E-value=2.4  Score=46.36  Aligned_cols=101  Identities=22%  Similarity=0.355  Sum_probs=69.2

Q ss_pred             CEEEEEccCCChh-hHHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPL-TSIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPl-TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      |||.-||+|=.|+ ++.|||+   -|-.|+|+|+|+.-++.=++            ++++.. ...|++|- .|..   .
T Consensus         1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~~---~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDYE---E   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCHH---H
Confidence            6899999998887 4678888   57899999999999887553            222222 23456663 3332   2


Q ss_pred             CCCCcceEEecccc-----CC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALA-----GN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALV-----gm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .....|++|++-.-     |.  ..--+.+.+.+..+++...++++.+.
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST  121 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST  121 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence            23467999986332     11  23446778888888888899999883

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=88.31  E-value=2.4  Score=42.54  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCC--hhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDID--ETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDID--peAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL  201 (535)
                      ..+.++.+||--|+|.+|..++.+|+.  .|.+|+.+..+  ++..+.    +..+| . +.+.....|..+..   ...
T Consensus       160 ~~~~~g~~vlI~g~g~~g~~~~~la~~--~G~~v~~~~~~~~~~~~~~----~~~~g-~-~~~~~~~~~~~~~l~~~~~~  231 (306)
T cd08258         160 SGIRPGDTVVVFGPGPIGLLAAQVAKL--QGATVVVVGTEKDEVRLDV----AKELG-A-DAVNGGEEDLAELVNEITDG  231 (306)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHH----HHHhC-C-cccCCCcCCHHHHHHHHcCC
Confidence            345788999999999999999999994  57888776443  334433    33445 3 11111122221111   112


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+|+-.  ++    ....+....+.|+++|.++.-.
T Consensus       232 ~~vd~vld~--~g----~~~~~~~~~~~l~~~G~~v~~g  264 (306)
T cd08258         232 DGADVVIEC--SG----AVPALEQALELLRKGGRIVQVG  264 (306)
T ss_pred             CCCCEEEEC--CC----ChHHHHHHHHHhhcCCEEEEEc
Confidence            358998754  22    2457888889999999998654

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=88.25  E-value=2.1  Score=42.38  Aligned_cols=95  Identities=13%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--cccccc-CCCCcce
Q 041205          131 QLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--IMEVKE-KLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A~el~~-dL~~FDv  206 (535)
                      .+.+||-+|+ |++|..++.+|++  .|.+|++++.+++..+.+++    .| . +.+ +-..+  ...+.. ....+|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~  216 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAK--LGYEVVASTGKADAADYLKK----LG-A-KEV-IPREELQEESIKPLEKQRWAG  216 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHH----cC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence            4679999998 9999999999994  57899999999887666643    45 2 111 10111  000100 1135898


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+-.  +|   .  ..+....+.|+++|+++.-..
T Consensus       217 vld~--~g---~--~~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         217 AVDP--VG---G--KTLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             EEEC--Cc---H--HHHHHHHHHhhcCCEEEEEee
Confidence            8732  32   2  357788899999999988653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.24  E-value=0.96  Score=42.21  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=51.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVf  208 (535)
                      ....||.|||-|--+-.|..|++   .|..|+++|+++.       .+. .|     +.|+.-|+.+-... ..+.|+||
T Consensus        12 ~~~~kiVEVGiG~~~~vA~~L~~---~G~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l~iY~~a~lIY   75 (127)
T PF03686_consen   12 NNYGKIVEVGIGFNPEVAKKLKE---RGFDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNLEIYEGADLIY   75 (127)
T ss_dssp             S-SSEEEEET-TT--HHHHHHHH---HS-EEEEE-SS-S------------S-----TTEE---SSS--HHHHTTEEEEE
T ss_pred             CCCCcEEEECcCCCHHHHHHHHH---cCCcEEEEECccc-------ccc-cC-----cceeeecccCCCHHHhcCCcEEE
Confidence            44569999999999999999988   5799999999998       122 44     57888888752212 14678888


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .--.-   ++-...+-.+++  +-|+-++++.
T Consensus        76 SiRPP---~El~~~il~lA~--~v~adlii~p  102 (127)
T PF03686_consen   76 SIRPP---PELQPPILELAK--KVGADLIIRP  102 (127)
T ss_dssp             EES-----TTSHHHHHHHHH--HHT-EEEEE-
T ss_pred             EeCCC---hHHhHHHHHHHH--HhCCCEEEEC
Confidence            64332   455666666666  3466677765

; PDB: 2K4M_A.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.18  E-value=0.61  Score=52.63  Aligned_cols=76  Identities=20%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-----------------HHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-----------------ANNLARRIVSSDDEIEKRMKFLTCD  193 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-----------------AIelAR~li~~lG~Ls~rI~Fi~GD  193 (535)
                      .+++|+-||+||.|+++...+.+  .|.+|+-+|..+.                 .++.-.+.+...|     |+|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC  381 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence            47999999999999999887763  5788999987653                 3444445566666     4454332


Q ss_pred             cc--c--cccCCCCcceEEecccc
Q 041205          194 IM--E--VKEKLGEYDCIILAALA  213 (535)
Q Consensus       194 A~--e--l~~dL~~FDvVfiaALV  213 (535)
                      ..  +  +......||.||++...
T Consensus       382 ~v~~~~~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        382 EIGRDITFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             ccCCcCCHHHHHhcCCEEEEeCCC
Confidence            11  1  11112469999987544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=88.16  E-value=3.9  Score=43.53  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             CCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++|..|| .|-+|.+--....  ..|..|+++|.++.            .           +..+.   ..+.|+||+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~------------~-----------~~~~~---~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDW------------D-----------RAEDI---LADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcc------------h-----------hHHHH---HhcCCEEEE
Confidence            348999999 8988877544333  25778999998641            0           11111   235799999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.-+   .....++..+.. ++||.+| ++.
T Consensus       149 avP~---~~~~~~~~~l~~-l~~~~iv-~Dv  174 (374)
T PRK11199        149 SVPI---HLTEEVIARLPP-LPEDCIL-VDL  174 (374)
T ss_pred             eCcH---HHHHHHHHHHhC-CCCCcEE-EEC
Confidence            8666   467888888888 7776654 544

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=88.00  E-value=2.1  Score=43.43  Aligned_cols=100  Identities=20%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-cccc--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKE--KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~--dL~  202 (535)
                      ..+.++++|+-.|+|.+|..++.+|+.  .|+ .|+++|.+++..+.+.    ..| ...-+.....+.. ++..  .-.
T Consensus       170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~  242 (350)
T cd08256         170 ANIKFDDVVVLAGAGPLGLGMIGAARL--KNPKKLIVLDLKDERLALAR----KFG-ADVVLNPPEVDVVEKIKELTGGY  242 (350)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCHHHHHHHH----HcC-CcEEecCCCcCHHHHHHHHhCCC
Confidence            456788999999999999999999994  454 5889999987765554    445 2110111111111 1111  112


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++|+|+-.  ++   . ...+....+.++++|.++.-
T Consensus       243 ~vdvvld~--~g---~-~~~~~~~~~~l~~~G~~v~~  273 (350)
T cd08256         243 GCDIYIEA--TG---H-PSAVEQGLNMIRKLGRFVEF  273 (350)
T ss_pred             CCCEEEEC--CC---C-hHHHHHHHHHhhcCCEEEEE
Confidence            48988753  32   1 23577788899999998874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=87.93  E-value=1.9  Score=47.96  Aligned_cols=99  Identities=12%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      -.+|-+||.|.||.. +..|++   .|..|+..|++++.++.-.+.....| . ..+ ....+..++...+...|+||+.
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~---~G~~V~V~NRt~~k~~~l~~~~~~~G-a-~~~-~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERAKKEG-N-LPL-YGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHhhhhcC-C-ccc-ccCCCHHHHHhcCCCCCEEEEE
Confidence            357999999988755 233333   58899999999988765443222224 1 111 1234455555555568999974


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -.-+  +.-..+++.+...|+||.++|-
T Consensus        80 v~~~--~aV~~Vi~gl~~~l~~G~iiID  105 (493)
T PLN02350         80 VKAG--APVDQTIKALSEYMEPGDCIID  105 (493)
T ss_pred             CCCc--HHHHHHHHHHHhhcCCCCEEEE
Confidence            2222  4456677888889999876653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=87.86  E-value=2.2  Score=39.57  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh---hcCC--cCCCeEEEEccccccccCCCCcceEE
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS---SDDE--IEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~---~lG~--Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +|.-||+|.+|.+.-.+..  ..|-+|+-...+++.++.=++.-.   .+..  +..++.+ +.|..+.   +.+.|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---LEDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---HTT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---hCcccEEE
Confidence            6889999998876554444  267899999999976654443211   1110  2345544 4554333   25679999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++--.   ..-..+++++.+++++|..++.-
T Consensus        75 iavPs---~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   75 IAVPS---QAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             E-S-G---GGHHHHHHHHTTTSHTT-EEEET
T ss_pred             ecccH---HHHHHHHHHHhhccCCCCEEEEe
Confidence            86433   34578999999999888877763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=87.82  E-value=2  Score=44.51  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ...++|+.||||..|.+-+.......+..+|+.++++++..+.-.+.+++.| .  .+.. +.+..+   ...++|+|+.
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-~--~~~~-~~~~~~---av~~aDIVi~  195 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-F--DAEV-VTDLEA---AVRQADIISC  195 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-C--ceEE-eCCHHH---HHhcCCEEEE
Confidence            5679999999998777665422212456889999999876443333333334 1  2332 233332   2357999976


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .....     ..++..  ..++||..+.+-
T Consensus       196 aT~s~-----~pvl~~--~~l~~g~~i~~i  218 (314)
T PRK06141        196 ATLST-----EPLVRG--EWLKPGTHLDLV  218 (314)
T ss_pred             eeCCC-----CCEecH--HHcCCCCEEEee
Confidence            54331     233322  567999865543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.77  E-value=3.6  Score=40.25  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCCChhhHHH-HHhhcCCCc-EEEEEeCC---hhHHH---------------HHHHHHhhcCCcCCCeEEE
Q 041205          131 QLKKVAFVGSGPMPLTSII-LASQHMKST-HFDNIDID---ETANN---------------LARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga-~VtGIDID---peAIe---------------lAR~li~~lG~Ls~rI~Fi  190 (535)
                      ...+|+-||||.+|..... +|+   .|. +|+-+|.|   +.-+.               .+.+.+.+.. ..-+++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~   95 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY   95 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence            3689999999977765443 444   455 79999999   32222               1223333332 12234443


Q ss_pred             Eccccc--cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          191 TCDIME--VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       191 ~GDA~e--l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ..+..+  +...+.++|+|+-+.  .-.+-|..+++.+.+.+++.-++.
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a~--Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEAF--DNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEECC--CCHHHHHHHHHHHHHHcCCCcEEE
Confidence            333321  111235799999762  223678888899998887644444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.76  E-value=1.6  Score=47.47  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=47.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+++|+.+|+|..|++...+..  ..|..|++.|.++...   .++....|     |.+..+...  ...+.++|+|+.+
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~S   81 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVTS   81 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEeC
Confidence            3578999999988886555544  3688999999765432   22334445     566655321  1223579999998


Q ss_pred             cccC
Q 041205          211 ALAG  214 (535)
Q Consensus       211 ALVg  214 (535)
                      ..+.
T Consensus        82 pgi~   85 (473)
T PRK00141         82 PGWR   85 (473)
T ss_pred             CCCC
Confidence            7773

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.70  E-value=2.5  Score=42.42  Aligned_cols=100  Identities=21%  Similarity=0.304  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEccCC-ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-cccc--CCCC
Q 041205          128 GVAQLKKVAFVGSGP-MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKE--KLGE  203 (535)
Q Consensus       128 ~l~~pkRVLeIGSGp-lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~--dL~~  203 (535)
                      .+.++.+||-.|.|+ +|..++.+|++  .|.+|+.+..+++..+.++    .+| ...-+.....|.. ++..  ...+
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~~  234 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKA--MGLRVIAIDVGDEKLELAK----ELG-ADAFVDFKKSDDVEAVKELTGGGG  234 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH----HcC-CcEEEcCCCccHHHHHHHHhcCCC
Confidence            567889999999876 89999999994  5789999999987766553    345 2111111111111 1111  1246


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+|+-++.-      ...+..+.+.|+++|+++.-.
T Consensus       235 vd~vl~~~~~------~~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         235 AHAVVVTAVS------AAAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             CCEEEEcCCc------hHHHHHHHHHhhcCCEEEEec
Confidence            9999864332      346778889999999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=87.63  E-value=1.4  Score=44.82  Aligned_cols=100  Identities=19%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             EEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceEEecc
Q 041205          134 KVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCIILAA  211 (535)
Q Consensus       134 RVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvVfiaA  211 (535)
                      +|+++-||.+|++.=+. .  ..-..|.++|+|+.+++.-+.++...        ++++|+.++...  ...+|+|+...
T Consensus         2 ~v~dLFsG~Gg~~~gl~-~--~G~~~v~a~e~~~~a~~~~~~N~~~~--------~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLE-K--AGFEIVAANEIDKSAAETYEANFPNK--------LIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHH-H--cCCEEEEEEeCCHHHHHHHHHhCCCC--------CccCccccCchhhcCCCCCEEEeCC
Confidence            68999999877764333 3  12235788999999999888876432        456777665542  35699998753


Q ss_pred             c------c----CChhhHHHHHH---HHHhhcccCeEEEEEcccccc
Q 041205          212 L------A----GNEEEKAKILG---HIRKYMKEGGVLLVRSAKGAR  245 (535)
Q Consensus       212 L------V----gm~edK~~VL~---eL~rvLKPGGvLVvRsa~GlR  245 (535)
                      -      .    +...++...+.   .+.+.++|- .+++-+..|+.
T Consensus        71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~  116 (275)
T cd00315          71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLL  116 (275)
T ss_pred             CChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchh
Confidence            1      1    11122332332   334456775 56677776653

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	535
3fpe_A	298	Crystal Structure Of Mtnas In Complex With Thermoni		8e-10
3fpg_A	298	Crystal Structure Of E81q Mutant Of Mtnas Length =		2e-09
3o31_A	296	E81q Mutant Of Mtnas In Complex With A Reaction Int		2e-09

>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With Thermonicotianamine Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85  LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
           LE+E A  + +   P   L  F +Y  Y++L K E        G    ++  F+G GP+P
Sbjct: 80  LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 135
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
           LT I+L+  H+     + ++I+     L+R+++         +  +T D   V + L E+
Sbjct: 136 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 189
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
           D +++AALA   E K ++  +I +Y+     ++ R+  G RA LY PV + ++  F+   
Sbjct: 190 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 264 IFHPTNDVINS 274
           +  P+  V N+
Sbjct: 247 VVLPSGKVNNT 257

>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas Length = 298

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85  LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
           L++E A  + +   P   L  F +Y  Y++L K E        G    ++  F+G GP+P
Sbjct: 80  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 135
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
           LT I+L+  H+     + ++I+     L+R+++         +  +T D   V + L E+
Sbjct: 136 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 189
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
           D +++AALA   E K ++  +I +Y+     ++ R+  G RA LY PV + ++  F+   
Sbjct: 190 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 264 IFHPTNDVINS 274
           +  P+  V N+
Sbjct: 247 VVLPSGKVNNT 257

>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction Intermediate Length = 296

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 85  LELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMP 144
           L++E A  + +   P   L  F +Y  Y++L K E        G    ++  F+G GP+P
Sbjct: 79  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG----ERAVFIGGGPLP 134
Query: 145 LTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY 204
           LT I+L+  H+     + ++I+     L+R+++         +  +T D   V + L E+
Sbjct: 135 LTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG--VDGVNVITGD-ETVIDGL-EF 188
Query: 205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY-PVVEHELFDFKVLS 263
           D +++AALA   E K ++  +I +Y+     ++ R+  G RA LY PV + ++  F+   
Sbjct: 189 DVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 264 IFHPTNDVINS 274
           +  P+  V N+
Sbjct: 246 VVLPSGKVNNT 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	3e-04

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score =  203 bits (516), Expect = 2e-61
 Identities = 56/275 (20%), Positives = 114/275 (41%), Gaps = 21/275 (7%)

Query: 18  LIARIMQIHASISKLESLRPSKQVNILFSHLVKL--CILPSSIDIKALPQ-----EVQQM 70
              +I +I + +  +         + +   L ++      S+ID ++        E+   
Sbjct: 6   YWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHA 65

Query: 71  RQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVA 130
              +          LE+E A  + +   P   L  F +Y  Y++L K E           
Sbjct: 66  LSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALG----RFR 121

Query: 131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL 190
           + ++  F+G GP+PLT I+L+  H+     + ++I+     L+R+++         +   
Sbjct: 122 RGERAVFIGGGPLPLTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITG 179

Query: 191 TCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYP 250
              +++      E+D +++AALA   E K ++  +I +Y+     ++ R+  G RA LY 
Sbjct: 180 DETVID----GLEFDVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYA 232

Query: 251 VVEHELFD-FKVLSIFHPTNDVINSVVLLQLPKDP 284
            V  +    F+   +  P+  V N+ VL+    D 
Sbjct: 233 PVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDK 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.1 bits (207), Expect = 4e-17
 Identities = 80/576 (13%), Positives = 155/576 (26%), Gaps = 182/576 (31%)

Query: 59  DIKALPQEVQQMRQSLIILCARAESLLE--------------------------LEFATY 92
            I      V    +    L ++ E +++                          +    Y
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 93  LSKISLPLNDLNRFPYY-----ENYVKLAKLEYGALIENTGVAQLKKVAFV------GSG 141
           + +     ND   F  Y     + Y+KL             + +L+    V      GSG
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKL----------RQALLELRPAKNVLIDGVLGSG 162

Query: 142 PMPLTSIILASQHMKSTHFDNI------------DIDETANNLARRIVSSDDEIEKRMKF 189
              +   +  S  ++      I             + E    L  +I  +          
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 190 LTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLL----VRSAKGAR 245
           +   I  ++ +L                   + L   + Y      LL    V++AK   
Sbjct: 223 IKLRIHSIQAEL-------------------RRLLKSKPYEN---CLLVLLNVQNAKAWN 260

Query: 246 AFLYPVVEHELFDF--KVL------SIFHPTNDVINSVVLLQLPKDPPKLVLKDKESVSQ 297
           A          F+   K+L       +     D +++     +  D   + L   E  S 
Sbjct: 261 A----------FNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 298 LQENRPRITSQLLH---DKLLPQASPNNKPYLFN--GNSCPCNHLEALDASKRAKITGKK 352
           L         + L      L  +    N P   +    S      + L      K     
Sbjct: 307 L--------LKYLDCRPQDLPREVLTTN-PRRLSIIAESIR----DGLATWDNWKHVNCD 353

Query: 353 KMARAEKASEEA--PSSSQANTSK---FQSDQWLEIESTSSGLTLADL-LREKRAEVEHL 406
           K+    ++S     P+  +    +   F     +          L+ +     +++V  +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI------LLSLIWFDVIKSDVMVV 407

Query: 407 VPLIQKADRVIPKSHAADAEKIPLSTTW---DIALANLLRVAYLLELHRPL-----AMKS 458
           V  + K       S     EK P  +T     I L   +++     LHR +       K+
Sbjct: 408 VNKLHK------YS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 459 F----------DGYI-----------QMAQNLEAAQKQVTELS---EKIRSEQDKNRQLR 494
           F          D Y            +  + +   +    +     +KIR +        
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNAS 517

Query: 495 NCILQLTQSLQAEEKRRFEVEAELETLKQKVDDQLK 530
             IL   Q L+  +    + + + E   + V+  L 
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYE---RLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 4e-13
 Identities = 84/551 (15%), Positives = 168/551 (30%), Gaps = 157/551 (28%)

Query: 4   HQNLNFQGQIPGEFLIARIMQIHASISKLESLRPS------------KQV---NILFSHL 48
              L    Q+  ++ ++R+         L  LRP+            K     ++  S+ 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 49  VKLCILPSSI---DIKAL--PQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLND- 102
           V+ C +   I   ++K    P+ V +M Q    L  + +       + + S I L ++  
Sbjct: 176 VQ-CKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWT-SRSDHSSNIKLRIHSI 230

Query: 103 ---LNRFPYYENYVKLAKLEYGALI-----ENTGVAQLKKVAFVGSGPMPLT----SIIL 150
              L R    + Y          L+     +N         AF  S  + LT     +  
Sbjct: 231 QAELRRLLKSKPYEN-------CLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTD 279

Query: 151 ASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM-KFLTCDIMEVKEKLGEYDCII- 208
                 +TH   I +D  +  L      + DE++  + K+L C      + L        
Sbjct: 280 FLSAATTTH---ISLDHHSMTL------TPDEVKSLLLKYLDCRP----QDLPREVLTTN 326

Query: 209 ---LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIF 265
              L+ +A +  +      + +    +    L    + +   L P    ++  F  LS+F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSLNVLEPAEYRKM--FDRLSVF 381

Query: 266 HPTNDVINSVVL----LQLPKDPPKLVLKDKESVSQLQENRPRITSQL------------ 309
            P +  I +++L      + K    +V+      S +++     T  +            
Sbjct: 382 -PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 310 ----LHDKLL-----PQASPNNKP-------YLFN--GNSCPCNHLEALDASKRAKITGK 351
               LH  ++     P+   ++         Y ++  G     +HL              
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----HHL-------------- 481

Query: 352 KKMARAEKASEEAPSSSQANTSKFQSDQWLEIESTSSGLTLADLLREKRAEVEHLVPLIQ 411
           K +   E+ +             F   ++LE       +            + + +  ++
Sbjct: 482 KNIEHPERMTL--------FRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLK 528

Query: 412 KADRVIPKSHAADAEKIPLSTTWDI------ALANLLRVAYLLELHRPLAMKSFDGYIQM 465
                I  +       +       I         NL+   Y   L   +A+ + D  I  
Sbjct: 529 FYKPYICDNDPKYERLVN-----AILDFLPKIEENLICSKYTDLLR--IALMAEDEAI-- 579

Query: 466 AQNLEAAQKQV 476
               E A KQV
Sbjct: 580 ---FEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 56/318 (17%), Positives = 100/318 (31%), Gaps = 74/318 (23%)

Query: 254 HELFDFKVLSIFHPTNDVINSVVLLQLPK--------DPPKLVLKDKESVSQLQENRPRI 305
           H   DF+     +   D++ SV               D PK +L  +E    +       
Sbjct: 4   HHHMDFETGEHQYQYKDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 306 TSQLLHDKLLPQASPNNKPYLFNGNSCPCNHLEALDASKRAKITGKKKMARAEKASEEAP 365
            +  L   LL +         F       N+               K +    K  +  P
Sbjct: 63  GTLRLFWTLLSK--QEEMVQKFVEEVLRINY---------------KFLMSPIKTEQRQP 105

Query: 366 SSSQANTSKFQSDQWLEIESTSSGLTLADLLREKRAEV--EHLVPLIQKADRVIP----- 418
           S     T  +  +Q   + + +      ++ R +      + L+ L + A  V+      
Sbjct: 106 S---MMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLG 160

Query: 419 --KSH-AADA-------EKIPLSTTWDIALANLLRVAYLLELHRPLAMKSFDGYIQMAQN 468
             K+  A D         K+     W + L N      +LE+ + L         Q+  N
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKL-------LYQIDPN 212

Query: 469 LEAAQKQVTELSEKIRSEQD------KNRQLRNCILQL-----TQSLQAEEKRRFEVEAE 517
             +     + +  +I S Q       K++   NC+L L      ++  A     F +  +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----FNLSCK 267

Query: 518 --LETLKQKVDDQLKAAN 533
             L T  ++V D L AA 
Sbjct: 268 ILLTTRFKQVTDFLSAAT 285

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 13/128 (10%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 115 LAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR 174
           L +     ++     +  ++V  +G G   L  I+L            +D+   +  +A+
Sbjct: 13  LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFF--EQITGVDVSYRSLEIAQ 70

Query: 175 RIVSSD---DEIEKRMKFLTCDIMEVKEKLGEYDCIILAALA--GNEEEKAKILGHIRKY 229
             +          +R++ +   +    ++   YD   +  +    +          + ++
Sbjct: 71  ERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEF 130

Query: 230 MKEGGVLL 237
            +   V++
Sbjct: 131 AQPKIVIV 138

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 23/140 (16%)

Query: 138 VGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV 197
           +G G   L S  L        +  ++D         +   +       ++++ T D+ ++
Sbjct: 49  LGCGNSAL-SYELFLGGFP--NVTSVDYSSVVVAAMQACYAHV----PQLRWETMDVRKL 101

Query: 198 KEKLGEYDCII----LAALAGNEEEKA-----------KILGHIRKYMKEGGVLLVRSAK 242
                 +D ++    L AL   E +             ++L  + + +  GG  +  ++ 
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS- 160

Query: 243 GARAFLYPVVEHELFDFKVL 262
            A  F         + + + 
Sbjct: 161 AAPHFRTRHYAQAYYGWSLR 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.71
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.7
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.69
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.67
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.66
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.66
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.66
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.66
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.66
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.65
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.65
3ocj_A	305	Putative exported protein; structural genomics, PS	99.65
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.64
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.63
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.62
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.62
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.61
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.61
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.61
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.61
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.6
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.6
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.6
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.59
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.59
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.59
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.59
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.58
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.57
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.57
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.56
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.56
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.55
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.55
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.55
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.54
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.54
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.54
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.54
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.54
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.54
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.54
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.53
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.53
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.52
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.52
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.52
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.51
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.51
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.51
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.5
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.5
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.5
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.5
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.49
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.49
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.49
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.48
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.48
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.48
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.48
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.47
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.47
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.47
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.47
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.46
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.46
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.46
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.46
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.46
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.45
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.45
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.45
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.45
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.45
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.44
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.44
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.44
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.44
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.44
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.44
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.44
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.43
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.43
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.43
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.43
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.43
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.42
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.42
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.42
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.42
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.42
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.41
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.41
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.41
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.41
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.4
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.4
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.4
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.4
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.4
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.4
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.4
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.39
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.38
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.38
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.38
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.38
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.38
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.38
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.38
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.38
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.37
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.37
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.37
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.36
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.36
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.36
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.36
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.36
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.35
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.35
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.35
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.35
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.34
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.34
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.34
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.34
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.34
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.34
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.34
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.34
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.33
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.33
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.33
2o07_A	304	Spermidine synthase; structural genomics, structur	99.33
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.32
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.32
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.32
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.32
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.32
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.31
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.31
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.31
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.31
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.31
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.3
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.3
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.3
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.28
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.28
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.28
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.27
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.27
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.27
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.27
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.27
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.26
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.26
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.25
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.25
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.24
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.23
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.23
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.23
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.22
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.22
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.21
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.21
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.2
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.2
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.19
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.19
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.18
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.18
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.16
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.16
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.16
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.16
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.15
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.15
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.15
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.15
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.14
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.13
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.13
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.12
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.12
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.11
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.08
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.07
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.07
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.06
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.04
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.04
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.03
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.02
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.02
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.02
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.01
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.01
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.01
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.0
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.99
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.98
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.98
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.97
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.95
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.94
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.94
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.94
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.93
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.92
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.88
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.86
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.84
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.83
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.82
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.79
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.78
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.77
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.74
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.73
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.72
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.72
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.71
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.64
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.62
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.6
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.59
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.59
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.59
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.51
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.4
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.38
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.36
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.33
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.32
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.3
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.25
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.21
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.11
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.88
3khk_A	544	Type I restriction-modification system methylation	97.79
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.75
3lkd_A	542	Type I restriction-modification system methyltrans	97.74
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.69
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.6
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.57
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.55
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.51
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.5
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.47
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.42
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.42
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.42
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.41
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.4
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.36
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.32
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.31
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.31
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.29
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.28
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.27
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.27
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.26
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.26
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.25
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.23
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.16
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.14
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.11
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.1
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.06
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.06
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.02
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.99
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.98
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.97
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.96
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.96
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.94
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.94
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.93
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.93
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.92
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.91
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.9
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.89
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.88
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.84
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.84
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.83
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.81
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.81
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.75
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.75
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.74
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.74
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.73
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.7
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.65
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.65
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.64
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.63
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.63
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.62
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.58
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.56
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.55
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.55
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.55
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.55
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.54
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.51
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.49
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.49
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.48
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.43
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.4
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.38
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.36
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.36
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.32
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.31
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.26
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.25
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.25
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.23
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.19
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.19
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.17
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.16
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.16
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.13
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.13
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.1
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.08
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.08
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.07
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.07
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.05
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.04
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.04
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.98
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.93
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.93
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.85
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.8
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.77
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.75
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.74
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.74
3ufb_A	530	Type I restriction-modification system methyltran	95.74
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	95.7
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.62
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.57
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.55
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.52
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.51
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.51
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.49
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	95.49
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.41
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.38
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.34
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.3
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.29
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.22
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.2
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.17
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.15
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.07
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.06
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.03
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.99
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.9
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.88
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.86
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.83
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.8
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.67
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.65
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.63
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.62
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.59
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.56
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.56
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.55
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.49
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.38
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.33
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.32
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.3
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.29
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.28
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.26
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.22
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.18
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	94.18
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.17
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.14
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.13
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.99
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.93
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.93
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.91
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.88
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.84
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.84
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.81
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.76
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.7
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.66
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.53
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.51
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.5
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.41
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	93.4
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	93.37
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.32
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.26
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	93.25
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.19
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.17
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.12
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.04
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.04
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.96
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.93
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	92.92
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.85
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.82
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.75
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.75
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	92.53
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.52
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	92.43
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	92.42
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.35
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.34
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.31
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	92.28
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.26
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	92.25
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.18
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	91.94
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	91.91
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.88

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=100.00  E-value=1.9e-48  Score=392.80  Aligned_cols=252  Identities=21%  Similarity=0.337  Sum_probs=231.8

Q ss_pred             HHHHHHHHHHHHHccCCCCCCchhHHHHHHHHHHh---hc----CCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhHH
Q 041205           17 FLIARIMQIHASISKLESLRPSKQVNILFSHLVKL---CI----LPSSIDIKALPQEVQQMRQSLIILCARAESLLELEF   89 (535)
Q Consensus        17 ~LI~~I~~ly~~Is~L~sL~PS~~VNaLFt~LV~l---C~----~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h~   89 (535)
                      ....+|.++|+.|+++++|+|++.||+||+.|.++   |.    .....+.+.-+|+++++++.+|+.|+.|+..+|.+|
T Consensus         5 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~w   84 (298)
T 3fpf_A            5 IYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEK   84 (298)
T ss_dssp             HHHHHHHHHHHHHGGGTTCGGGCCTTTTHHHHHHHHHHHTCTTSCHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcccCCcCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999966665   43    333455566789999999999999999999999999


Q ss_pred             HhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhH
Q 041205           90 ATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETA  169 (535)
Q Consensus        90 A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeA  169 (535)
                      |++|+++++||++|..||||+||+++++.|+.+    +.+.++++||||||||+|+|++++|+  .+|++|+|||+|+++
T Consensus        85 a~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~l----a~l~~g~rVLDIGcG~G~~ta~~lA~--~~ga~V~gIDis~~~  158 (298)
T 3fpf_A           85 AQEVIESDSPWETLRSFYFYPRYLELLKNEAAL----GRFRRGERAVFIGGGPLPLTGILLSH--VYGMRVNVVEIEPDI  158 (298)
T ss_dssp             HHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHH----TTCCTTCEEEEECCCSSCHHHHHHHH--TTCCEEEEEESSHHH
T ss_pred             HHHHhccCChHHhhccCCCcccHHHHHHHHHHH----cCCCCcCEEEEECCCccHHHHHHHHH--ccCCEEEEEECCHHH
Confidence            999999999999999999999999999999853    46789999999999999999999988  579999999999999


Q ss_pred             HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccC
Q 041205          170 NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLY  249 (535)
Q Consensus       170 IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLY  249 (535)
                      ++.||+++++.| + ++|+|++||+.+++  .+.||+||+++.+   ++|.++++++.++|||||+|++++++|++.++|
T Consensus       159 l~~Ar~~~~~~g-l-~~v~~v~gDa~~l~--d~~FDvV~~~a~~---~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~  231 (298)
T 3fpf_A          159 AELSRKVIEGLG-V-DGVNVITGDETVID--GLEFDVLMVAALA---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILY  231 (298)
T ss_dssp             HHHHHHHHHHHT-C-CSEEEEESCGGGGG--GCCCSEEEECTTC---SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSS
T ss_pred             HHHHHHHHHhcC-C-CCeEEEECchhhCC--CCCcCEEEECCCc---cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhcc
Confidence            999999999999 6 89999999999865  4679999998776   799999999999999999999999999999999


Q ss_pred             CCCcc-ccCCcEEEEEEcCCCcceeeeEEEecC
Q 041205          250 PVVEH-ELFDFKVLSIFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       250 P~Vdp-dl~GFeil~v~hP~~eVINSVVvARK~  281 (535)
                      |.+++ +..||+.+.+.||.++|+|+||++||.
T Consensus       232 ~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          232 APVSDDDITGFRRAGVVLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             CCCCTGGGTTEEEEEEECCCTTCCCEEEEEEEC
T ss_pred             ccCChhhhhhhhheeEECCCCCcCcEEEEEEcc
Confidence            99999 789999999999999999999999995

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.71  E-value=9.5e-18  Score=159.20  Aligned_cols=104  Identities=14%  Similarity=0.269  Sum_probs=93.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccCC--CCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEKL--GEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~dL--~~FDvVfi  209 (535)
                      .+||||||| .|+++++||++..++++|++||+|+++++.|++++++.| +. ++|+|++||+.+....+  +.||+||+
T Consensus        58 ~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPA-AGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-YSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTT-HHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            399999999 599999999954468999999999999999999999999 77 79999999998876554  57999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++..   .++..+++.+.+.|+|||+|++.+.
T Consensus       136 d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          136 QVSP---MDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             CCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             cCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            9776   5788899999999999999999885

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=8e-17  Score=157.10  Aligned_cols=125  Identities=15%  Similarity=0.193  Sum_probs=99.2

Q ss_pred             ccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCC
Q 041205          107 PYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEK  185 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~  185 (535)
                      |+|+....++..   ++..+  +.++.+|||||||+ |..++.+|++. .+|++|+|||+|++|++.||+.+...| ...
T Consensus        51 P~Y~~~~~~i~~---l~~~~--~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~  123 (261)
T 4gek_A           51 PGYSNIISMIGM---LAERF--VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT  123 (261)
T ss_dssp             TTHHHHHHHHHH---HHHHH--CCTTCEEEEETCTT-THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSS
T ss_pred             CCHHHHHHHHHH---HHHHh--CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCc
Confidence            676655444432   22222  36899999999996 67777888743 368899999999999999999999988 678


Q ss_pred             CeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          186 RMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       186 rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+|+++|+.+++.  .+||+|++....+.  .+++..+|++++++|||||+|++.+
T Consensus       124 ~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          124 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             CEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            99999999987654  57999997655543  5677899999999999999999864

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.70  E-value=1.5e-16  Score=145.74  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=114.6

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+.....+.++.+|||||||+ |..+..+++...++.+|+|+|+|+++++.|++.+...| + .+++|+++|+.+++...
T Consensus        28 ~~~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           28 KVLKEFGLKEGMTVLDVGTGA-GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-L-KNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHTCCTTCEEEESSCTT-CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECBTTBCSSCS
T ss_pred             HHHHHhCCCCCCEEEEEecCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEecccccCCCCC
Confidence            334445567889999999996 66667777744467899999999999999999999988 5 48999999998877666


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccccccccc----CCCCcc-------ccCCcEEEEEEcCCCc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFL----YPVVEH-------ELFDFKVLSIFHPTND  270 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fL----YP~Vdp-------dl~GFeil~v~hP~~e  270 (535)
                      +.||+|++....+..++...+++++.+.|+|||.+++.+........    ....+.       .-.||++..+..-.+ 
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-  183 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK-  183 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT-
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC-
Confidence            77999998766644578899999999999999999997632111111    111111       127999877655333 


Q ss_pred             ceeeeEEEecC
Q 041205          271 VINSVVLLQLP  281 (535)
Q Consensus       271 VINSVVvARK~  281 (535)
                      . ..++++||+
T Consensus       184 ~-~~~~~~~k~  193 (219)
T 3dh0_A          184 Y-CFGVYAMIV  193 (219)
T ss_dssp             T-EEEEEEECC
T ss_pred             c-eEEEEEEec
Confidence            2 347778875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.69  E-value=1.1e-16  Score=150.99  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=94.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-C-CCCcc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-K-LGEYD  205 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-d-L~~FD  205 (535)
                      ...++++|||||||+ |++++++|+ ..++++|++||+|+++++.|++.++..| +.++|+|+++|+.+... . .+.||
T Consensus        68 ~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD  144 (232)
T 3ntv_A           68 RMNNVKNILEIGTAI-GYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNALEQFENVNDKVYD  144 (232)
T ss_dssp             HHHTCCEEEEECCSS-SHHHHHHHT-TCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCHHHHTTSCEE
T ss_pred             hhcCCCEEEEEeCch-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhhccCCcc
Confidence            345789999999995 888899998 5779999999999999999999999999 77899999999987544 2 35799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +||+++..   ..+..+++.+.+.|+|||+|++.+.
T Consensus       145 ~V~~~~~~---~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          145 MIFIDAAK---AQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             EEEEETTS---SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             EEEEcCcH---HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            99998766   5788999999999999999999875

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.68  E-value=2.8e-17  Score=157.70  Aligned_cols=109  Identities=14%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC------C
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK------L  201 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d------L  201 (535)
                      ...++++|||||||+ |+++++||+...++++|++||+++++++.|+++++..| +.++|+|++||+.+....      .
T Consensus        57 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~~~~~~~~  134 (242)
T 3r3h_A           57 RLTRAKKVLELGTFT-GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKIKLRLGPALDTLHSLLNEGGE  134 (242)
T ss_dssp             HHHTCSEEEEEESCC-SHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTTTEEEEESCHHHHHHHHHHHHCS
T ss_pred             hhcCcCEEEEeeCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHhhccCC
Confidence            345789999999995 89999999843348999999999999999999999999 788999999999876554      3


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+||+++..   .++..+++.+.++|+|||+|++.+.
T Consensus       135 ~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          135 HQFDFIFIDADK---TNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             SCEEEEEEESCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CCEeEEEEcCCh---HHhHHHHHHHHHhcCCCeEEEEECC
Confidence            679999999776   6889999999999999999999885

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.67  E-value=1.3e-16  Score=147.56  Aligned_cols=107  Identities=14%  Similarity=0.255  Sum_probs=93.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----G  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~  202 (535)
                      ..++.+|||||||+ |++++++|++ ++ +++|+++|+++++++.|++++...| +.++++|+++|+.+....+     +
T Consensus        56 ~~~~~~vLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           56 IQGARNILEIGTLG-GYSTIWLARG-LSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTT-CCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hhCCCEEEEecCCc-cHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            35789999999995 7888999984 44 8999999999999999999999999 7788999999997654322     4


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+||+++..   +....+++.+.++|+|||+|++.+.
T Consensus       133 ~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          133 PFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            69999998765   6889999999999999999999875

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=2.6e-16  Score=150.48  Aligned_cols=107  Identities=16%  Similarity=0.291  Sum_probs=93.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~F  204 (535)
                      ..++++|||||||+ |++++.+|+. ++ +++|++||+|+++++.|++++++.| +.++|+|+++|+.+....+   +.|
T Consensus        61 ~~~~~~VLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           61 LTQAKRILEIGTLG-GYSTIWMARE-LPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTT-SCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hcCCCEEEEecCCc-hHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            45789999999995 8888999984 44 8999999999999999999999999 7789999999998754432   369


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+||+++..   +++..+++.+.+.|+|||+|++.+.
T Consensus       138 D~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          138 DLIFIDADK---PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             SEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEEEECCch---HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            999998765   6889999999999999999999885

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.66  E-value=1.9e-16  Score=149.78  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=93.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC------C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL------G  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL------~  202 (535)
                      ..++++||||||| .|++++++|+...++++|+++|+|+++++.|+++++..| +.++|+|+++|+.+....+      +
T Consensus        70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~l~~l~~~~~~~  147 (232)
T 3cbg_A           70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKISLRLGPALATLEQLTQGKPLP  147 (232)
T ss_dssp             HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred             hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            3568999999999 589999999843337899999999999999999999999 7778999999987643322      5


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+||+++..   +++..+++.+.+.|+|||+|++.+.
T Consensus       148 ~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          148 EFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             CEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             CcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            79999998765   6899999999999999999999885

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.66  E-value=4.6e-16  Score=148.08  Aligned_cols=108  Identities=20%  Similarity=0.279  Sum_probs=94.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-------C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-------L  201 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-------L  201 (535)
                      ..++++||||||| .|++++++|+.+.++++|+++|+|+++++.|++++++.| +.++|+|+++|+.+....       .
T Consensus        68 ~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~  145 (237)
T 3c3y_A           68 LVNAKKTIEVGVF-TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDAMLALDNLLQGQESE  145 (237)
T ss_dssp             HTTCCEEEEECCT-TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred             hhCCCEEEEeCCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhccCCC
Confidence            3578999999999 589999999953348999999999999999999999999 777899999999875432       3


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+||+++..   .++..+++.+.+.|+|||+|++.+.
T Consensus       146 ~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          146 GSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             TCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            579999999766   6899999999999999999999885

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.66  E-value=4.6e-16  Score=149.68  Aligned_cols=108  Identities=16%  Similarity=0.236  Sum_probs=94.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-------C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-------L  201 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-------L  201 (535)
                      ..++++||||||| .|++++++|+.+.++++|++||+|+++++.|++++++.| +.++|+|+++|+.+....       .
T Consensus        77 ~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           77 LINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             HTTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hhCcCEEEEeCCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHHHHHhccCCC
Confidence            3578999999999 599999999953348999999999999999999999999 778999999999875432       3


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+||+++.+   .++..+++.+.++|+|||+|++.+.
T Consensus       155 ~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          155 GSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             TCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             CCEEEEEEcCch---HHHHHHHHHHHHhCCCCeEEEEecC
Confidence            579999999776   5789999999999999999999874

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.66  E-value=1.6e-16  Score=148.07  Aligned_cols=112  Identities=12%  Similarity=0.184  Sum_probs=92.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----  201 (535)
                      ....++++|||||||+ |.+++.+|+...++++|++||+++++++.|+++++..| +.++|+|+++|+.+....+     
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~  131 (221)
T 3u81_A           54 IREYSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYD  131 (221)
T ss_dssp             HHHHCCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGTTTTSC
T ss_pred             HHhcCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCceEEEECCHHHHHHHHHHhcC
Confidence            3346789999999995 88889999843458999999999999999999999999 7788999999997754433     


Q ss_pred             -CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 -GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 -~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       +.||+||+++..+...+..+++..+ ++|+|||+|++.+.
T Consensus       132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~  171 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV  171 (221)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred             CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence             4699999987664334445677777 99999999999875

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.65  E-value=2e-16  Score=146.02  Aligned_cols=108  Identities=20%  Similarity=0.267  Sum_probs=93.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC------C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL------G  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL------~  202 (535)
                      ..++++|||||||+ |++++.+|+++.++++|+++|+++++++.|++.++..| +.++++|+++|+.+.....      +
T Consensus        62 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (225)
T 3tr6_A           62 LMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-LSDKIGLRLSPAKDTLAELIHAGQAW  139 (225)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred             hhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeCCHHHHHHHhhhccCCC
Confidence            35789999999995 88889998843338999999999999999999999999 7788999999997654322      5


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+||+++..   .++..+++.+.++|+|||+|++.+.
T Consensus       140 ~fD~v~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          140 QYDLIYIDADK---ANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             CEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CccEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            79999988765   6789999999999999999999885

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.65  E-value=2e-15  Score=142.99  Aligned_cols=133  Identities=17%  Similarity=0.273  Sum_probs=106.4

Q ss_pred             cCccchh------hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh
Q 041205          105 RFPYYEN------YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVS  178 (535)
Q Consensus       105 ~FpYy~N------Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~  178 (535)
                      ++.||++      +....+.-...+...+.+.++.+|||||||+ |..++.++++  .+++|+|+|+|+++++.|++.+.
T Consensus        29 ~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~  105 (273)
T 3bus_A           29 HFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGI-GKPAVRLATA--RDVRVTGISISRPQVNQANARAT  105 (273)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTT-SHHHHHHHHH--SCCEEEEEESCHHHHHHHHHHHH
T ss_pred             eEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHH
Confidence            5677754      3333333344555555667899999999996 6666777774  37999999999999999999999


Q ss_pred             hcCCcCCCeEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          179 SDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       179 ~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..| +.++++|+++|+.+++...+.||+|+.....+..+++..+++++.++|+|||++++.+.
T Consensus       106 ~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          106 AAG-LANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             HTT-CTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hcC-CCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            989 77899999999988776667899999776555457889999999999999999998763

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.65  E-value=1e-15  Score=149.37  Aligned_cols=110  Identities=18%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+|||||||+ |..++.+|....++++|+|+|+|+.+++.|++.+...| +.++++|+++|+.+++.+ +.||+|
T Consensus       115 ~l~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~fD~v  191 (305)
T 3ocj_A          115 HLRPGCVVASVPCGW-MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDAWKLDTR-EGYDLL  191 (305)
T ss_dssp             HCCTTCEEEETTCTT-CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCGGGCCCC-SCEEEE
T ss_pred             hCCCCCEEEEecCCC-CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECchhcCCcc-CCeEEE
Confidence            357899999999995 67777776334689999999999999999999999999 778899999999988766 789999


Q ss_pred             EeccccCChhhH---HHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEK---AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK---~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++....+..++.   ..++++++++|+|||++++.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            986544322333   358999999999999999876

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.64  E-value=2.4e-16  Score=145.10  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=91.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvV  207 (535)
                      .++++||||||| .|++++.+|+. ++ +++|+++|+|+++++.|+++++..| +.++++|+++|+.+.... .+ ||+|
T Consensus        55 ~~~~~vLdiG~G-~G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~-fD~v  130 (210)
T 3c3p_A           55 KQPQLVVVPGDG-LGCASWWFARA-ISISSRVVMIDPDRDNVEHARRMLHDNG-LIDRVELQVGDPLGIAAGQRD-IDIL  130 (210)
T ss_dssp             HCCSEEEEESCG-GGHHHHHHHTT-SCTTCEEEEEESCHHHHHHHHHHHHHHS-GGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred             hCCCEEEEEcCC-ccHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHCC-CCceEEEEEecHHHHhccCCC-CCEE
Confidence            468899999999 58899999984 45 8999999999999999999999999 777899999999875333 24 9999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++..   .++..+++.+.++|+|||+|++.+.
T Consensus       131 ~~~~~~---~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          131 FMDCDV---FNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EEETTT---SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EEcCCh---hhhHHHHHHHHHhcCCCeEEEEECc
Confidence            998665   5789999999999999999999774

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.63  E-value=1.1e-15  Score=143.09  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=97.0

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++.+|||||||+ |..++.+|+. + +++|+|+|+++++++.|++.++..| +.++++|+++|+.+++.
T Consensus        25 ~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~  100 (256)
T 1nkv_A           25 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARD-H-GITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYVA  100 (256)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHH-T-CCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCCC
T ss_pred             HHHHHHhcCCCCCCEEEEECCCC-CHHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECChHhCCc
Confidence            44444555668899999999997 6667778774 3 7899999999999999999999999 77799999999988766


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       .+.||+|++....+..++...+|+++.++|||||++++...
T Consensus       101 -~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A          101 -NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             -SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             -CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence             56799999754443346789999999999999999998653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.62  E-value=2.2e-15  Score=136.09  Aligned_cols=111  Identities=21%  Similarity=0.290  Sum_probs=94.0

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ......++ +|||||||+ |..+..++++  ++.+|+|+|+|+++++.|++.+...| +..+++|+++|+.+++...+.|
T Consensus        38 ~~~~~~~~-~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~  112 (219)
T 3dlc_A           38 NRFGITAG-TCIDIGSGP-GALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVHNIPIEDNYA  112 (219)
T ss_dssp             HHHCCCEE-EEEEETCTT-SHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTTBCSSCTTCE
T ss_pred             HhcCCCCC-EEEEECCCC-CHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHHHCCCCcccc
Confidence            33443444 999999996 6667778773  78999999999999999999999999 6789999999998877666789


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++....+..++...++++++++|+|||.+++.+
T Consensus       113 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          113 DLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            999987655445788999999999999999999865

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.62  E-value=3.3e-15  Score=143.70  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=105.0

Q ss_pred             cCccchhh------HHhHHHHHHHHHHhh----CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 041205          105 RFPYYENY------VKLAKLEYGALIENT----GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR  174 (535)
Q Consensus       105 ~FpYy~NY------v~LirlE~~lL~~~~----~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR  174 (535)
                      ++.||++.      ....+.....+...+    .+.++.+|||||||+ |..++.+++.  .|++|+|+|+++.+++.|+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~  122 (297)
T 2o57_A           46 HVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGY-GGAARFLVRK--FGVSIDCLNIAPVQNKRNE  122 (297)
T ss_dssp             CSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHH
T ss_pred             EEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCC-CHHHHHHHHH--hCCEEEEEeCCHHHHHHHH
Confidence            45676542      333334444455555    667899999999996 5666677773  2789999999999999999


Q ss_pred             HHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          175 RIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       175 ~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.++..| +..+++|+++|+.+++...+.||+|+.....+..+++..+|.++.++|||||+|++...
T Consensus       123 ~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          123 EYNNQAG-LADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             HHHHHHT-CTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHhcC-CCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999989 77899999999998877667899999865544346789999999999999999998763

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.62  E-value=1.4e-15  Score=140.75  Aligned_cols=109  Identities=18%  Similarity=0.263  Sum_probs=93.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC------
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL------  201 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL------  201 (535)
                      ...++++||||||| .|++++.+|+...++++|+++|+|+++++.|+++++..| +.++++|+++|+.+....+      
T Consensus        66 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           66 RLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             HHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             HhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCeEEEEEcCHHHHHHHHHhcCCC
Confidence            34678999999999 589999999843338999999999999999999999999 7789999999997653322      


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+||+++..   ..+..+++.+.+.|+|||++++.+.
T Consensus       144 ~~~D~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          144 GTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             TCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            579999998765   5789999999999999999999875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=2.7e-15  Score=141.68  Aligned_cols=142  Identities=13%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---CCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---LGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---L~~FDv  206 (535)
                      .++.+|||||||+ |+.++.+|. ..++++|+|||+|+++++.|+++++..| +. +++|+++|+.+++..   .+.||+
T Consensus        69 ~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGA-GFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEeccHHHhcccccccCCccE
Confidence            5789999999995 788888886 3578999999999999999999999999 54 699999999887643   357999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-----ccCCcEEEE---EEcCCCcceeeeEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-----ELFDFKVLS---IFHPTNDVINSVVLL  278 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-----dl~GFeil~---v~hP~~eVINSVVvA  278 (535)
                      |++.+ +   .+...+++.+.++|+|||++++-.+....    ..+..     ...||++..   +.+|..+....++++
T Consensus       145 V~~~~-~---~~~~~~l~~~~~~LkpgG~l~~~~g~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  216 (240)
T 1xdz_A          145 VTARA-V---ARLSVLSELCLPLVKKNGLFVALKAASAE----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVI  216 (240)
T ss_dssp             EEEEC-C---SCHHHHHHHHGGGEEEEEEEEEEECC-CH----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEec-c---CCHHHHHHHHHHhcCCCCEEEEEeCCCch----HHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEE
Confidence            99876 3   47899999999999999999885321100    00110     236887754   346765544567777


Q ss_pred             ecCCC
Q 041205          279 QLPKD  283 (535)
Q Consensus       279 RK~~~  283 (535)
                      +|..+
T Consensus       217 ~k~~~  221 (240)
T 1xdz_A          217 RKIKN  221 (240)
T ss_dssp             EECSC
T ss_pred             EecCC
Confidence            77533

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.61  E-value=1.6e-15  Score=143.26  Aligned_cols=128  Identities=14%  Similarity=0.197  Sum_probs=98.6

Q ss_pred             ccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205          107 PYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR  186 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r  186 (535)
                      .|..........++..+...+...++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++.++..| + .+
T Consensus        13 ~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~-~~   86 (260)
T 1vl5_A           13 MYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGG-GHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNG-H-QQ   86 (260)
T ss_dssp             ----------CCCHHHHHHHHTCCSCCEEEEETCTT-CHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-C-CS
T ss_pred             eeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCC-CHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHhcC-C-Cc
Confidence            565555555556666666667668899999999996 6666778773   3599999999999999999999888 4 47


Q ss_pred             eEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          187 MKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       187 I~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+++|+.+++...+.||+|+.....+..++...+|.++.++|+|||+|++..
T Consensus        87 v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A           87 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999999877766789999987555445788999999999999999999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.61  E-value=1.1e-14  Score=140.80  Aligned_cols=140  Identities=11%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---CCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---LGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---L~~FDv  206 (535)
                      .++.+|||||||+ |+.++.+|. ..++++|++||+|+++++.|+++++..| +. +|+|+++|+.++...   .+.||+
T Consensus        79 ~~~~~vLDiG~G~-G~~~i~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~-~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGA-GFPGLPLKI-VRPELELVLVDATRKKVAFVERAIEVLG-LK-GARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTT-TTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-ceEEEECcHHHhhcccccCCCceE
Confidence            5689999999995 888899988 4689999999999999999999999999 64 599999999887653   257999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-----ccCCcEEEE---EEcCCCcceeeeEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-----ELFDFKVLS---IFHPTNDVINSVVLL  278 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-----dl~GFeil~---v~hP~~eVINSVVvA  278 (535)
                      |+..+..    +...+++.+.++|+|||++++-.+...    ...+..     ...||++..   +..|..+....+++.
T Consensus       155 I~s~a~~----~~~~ll~~~~~~LkpgG~l~~~~g~~~----~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~  226 (249)
T 3g89_A          155 AVARAVA----PLCVLSELLLPFLEVGGAAVAMKGPRV----EEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVL  226 (249)
T ss_dssp             EEEESSC----CHHHHHHHHGGGEEEEEEEEEEECSCC----HHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCcC----CHHHHHHHHHHHcCCCeEEEEEeCCCc----HHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEE
Confidence            9987543    678999999999999999887443110    001111     124887654   334765555667777


Q ss_pred             ecC
Q 041205          279 QLP  281 (535)
Q Consensus       279 RK~  281 (535)
                      +|.
T Consensus       227 ~k~  229 (249)
T 3g89_A          227 EKT  229 (249)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            775

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.61  E-value=7e-16  Score=144.16  Aligned_cols=107  Identities=19%  Similarity=0.325  Sum_probs=92.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---CCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---LGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---L~~FD  205 (535)
                      ..++++|||||||+ |+.++.+|+ ..++++|+++|+++++++.|++.++..| +.++++|+++|+.+....   .+.||
T Consensus        52 ~~~~~~vLdiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD  128 (233)
T 2gpy_A           52 MAAPARILEIGTAI-GYSAIRMAQ-ALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDALQLGEKLELYPLFD  128 (233)
T ss_dssp             HHCCSEEEEECCTT-SHHHHHHHH-HCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred             ccCCCEEEEecCCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhcccCCCcc
Confidence            35789999999995 788888888 4678999999999999999999999999 777899999999874332   35799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +||+++..   .+...+++.+.+.|+|||+|++.+.
T Consensus       129 ~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          129 VLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             EEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            99998776   5789999999999999999999864

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.61  E-value=6.1e-15  Score=134.81  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             HHHHH-HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc
Q 041205          116 AKLEY-GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI  194 (535)
Q Consensus       116 irlE~-~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA  194 (535)
                      ++.|. ..+...+.+.++.+|||||||+ |..++.+|+. .++++|+++|+|+++++.|+++++..| + ++++++++|+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~   99 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGS-ASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFA   99 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTT-CHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCC-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCCh
Confidence            55554 4444455668899999999996 6777888883 677999999999999999999999999 5 7899999999


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.......||+||+....   .+...+++++.+.|+|||++++...
T Consensus       100 ~~~~~~~~~~D~i~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          100 PEGLDDLPDPDRVFIGGSG---GMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             TTTCTTSCCCSEEEESCCT---TCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             hhhhhcCCCCCEEEECCCC---cCHHHHHHHHHHhcCCCeEEEEEec
Confidence            7766656779999998655   4788999999999999999998653

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.60  E-value=2.9e-15  Score=142.48  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=89.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvV  207 (535)
                      .++.|||||||| .|+++..+|++  .+.+|+|||+|+++++.|++.++..+   .+++|+.+|+.++..+  .+.||.|
T Consensus        59 ~~G~rVLdiG~G-~G~~~~~~~~~--~~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFG-MAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHTTS--CEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCC-ccHHHHHHHHh--CCcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccccccCCceE
Confidence            678999999999 58999999883  45799999999999999999998877   4789999999876543  3569999


Q ss_pred             EeccccC----C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAG----N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVg----m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++....    . ..++..++++++|+|||||+|++-+.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~  171 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEec
Confidence            9875432    1 57899999999999999999998763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.60  E-value=7.1e-15  Score=135.16  Aligned_cols=127  Identities=13%  Similarity=0.220  Sum_probs=96.0

Q ss_pred             hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----C
Q 041205          111 NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----R  186 (535)
Q Consensus       111 NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----r  186 (535)
                      .|.++...-+..+...+...++.+|||||||+ |..+..+++ ..+..+|+|+|+|+.+++.|++.+...| +..    +
T Consensus         9 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~   85 (219)
T 3jwg_A            9 KKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGE-GNLLSLLLK-DKSFEQITGVDVSYSVLERAKDRLKIDR-LPEMQRKR   85 (219)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCCEEEEETCTT-CHHHHHHHT-STTCCEEEEEESCHHHHHHHHHHHTGGG-SCHHHHTT
T ss_pred             cCCcchHHHHHHHHHHHhhcCCCEEEEecCCC-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHHHhhc-cccccCcc
Confidence            33444444444444444446789999999996 666677777 3556899999999999999999998877 554    8


Q ss_pred             eEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          187 MKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       187 I~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+++|+...+...+.||+|++....+.  .++...+++++.++|+|||++++..
T Consensus        86 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             eEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99999999766655578999997765543  3355899999999999999777644

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.60  E-value=8.8e-15  Score=133.10  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=102.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |..++.++. ..++.+|+|+|+|+++++.|++.+...| +. +++|+++|+.+.+ ..+.||+|+..
T Consensus        65 ~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~-~~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGP-GLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELK-LE-NIEPVQSRVEEFP-SEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-CS-SEEEEECCTTTSC-CCSCEEEEECS
T ss_pred             CCCeEEEECCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEecchhhCC-ccCCcCEEEEe
Confidence            478999999996 666677777 4678999999999999999999999988 54 4999999998755 33579999975


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCccccCCcEEEE---EEcCCCcceeeeEEEecC
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLS---IFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl~GFeil~---v~hP~~eVINSVVvARK~  281 (535)
                      +.    .+...++..+.+.|+|||.+++......    ...+..-..||++..   ...|...-...+++.+|.
T Consensus       140 ~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          140 AF----ASLNDMVSWCHHLPGEQGRFYALKGQMP----EDEIALLPEEYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             CS----SSHHHHHHHHTTSEEEEEEEEEEESSCC----HHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             cc----CCHHHHHHHHHHhcCCCcEEEEEeCCCc----hHHHHHHhcCCceeeeeeeccCCCCCceEEEEEEec
Confidence            43    4688999999999999999998643110    000110124898764   356765556778888774

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.59  E-value=2e-15  Score=142.19  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=91.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--------
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--------  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--------  200 (535)
                      ..++++|||||||+ |+.++.+|+...++++|+++|+|+++++.|++.++..| +.++++|+++|+.+....        
T Consensus        58 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           58 ISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            35789999999995 88888998843337899999999999999999999999 677899999999764321        


Q ss_pred             --------C-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 --------L-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 --------L-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                              . +.||+||+++..   ++...+++.+.+.|+|||+|++.+.
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             cccccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                    1 579999998655   6788999999999999999999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.59  E-value=3.4e-14  Score=127.18  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=90.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+...++.+|||||||+ |..++.+++   .+.+|+|+|+|+.+++.|++.+...| + .+++|+++|+.+.+. .+.||
T Consensus        27 ~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~-~~~~D   99 (199)
T 2xvm_A           27 AVKVVKPGKTLDLGCGN-GRNSLYLAA---NGYDVDAWDKNAMSIANVERIKSIEN-L-DNLHTRVVDLNNLTF-DRQYD   99 (199)
T ss_dssp             HTTTSCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECCGGGCCC-CCCEE
T ss_pred             HhhccCCCeEEEEcCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhCC-C-CCcEEEEcchhhCCC-CCCce
Confidence            34446788999999996 667778888   37899999999999999999998888 4 579999999988765 56799


Q ss_pred             eEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+.....+.  .++...+++++.++|+|||.+++-+
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9998765543  4588999999999999999977654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.59  E-value=6.6e-15  Score=137.88  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=93.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+|||||||+ |..++.+++. .+ ++|+|+|+|+.+++.|++.+...| +.++++|+++|+.+++...+.||+|
T Consensus        43 ~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v  118 (257)
T 3f4k_A           43 ELTDDAKIADIGCGT-GGQTLFLADY-VK-GQITGIDLFPDFIEIFNENAVKAN-CADRVKGITGSMDNLPFQNEELDLI  118 (257)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHH-CC-SEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             cCCCCCeEEEeCCCC-CHHHHHHHHh-CC-CeEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCCCCCCEEEE
Confidence            567889999999996 6777788873 33 599999999999999999999999 7788999999998877666789999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++....+.. +...+++++.++|+|||++++...
T Consensus       119 ~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          119 WSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             EEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            987666543 788999999999999999999763

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.59  E-value=1.9e-14  Score=134.06  Aligned_cols=118  Identities=8%  Similarity=0.109  Sum_probs=96.2

Q ss_pred             HhHHHHH-HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          114 KLAKLEY-GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       114 ~LirlE~-~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      .++..+. ..+...+.+.++++|||||||+ |..++.+|+.   +++|+|||+|+++++.|+++++..| +.++++|+++
T Consensus        37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~  111 (204)
T 3njr_A           37 QITKSPMRALTLAALAPRRGELLWDIGGGS-GSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQG  111 (204)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEETCTT-CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEES
T ss_pred             CCCcHHHHHHHHHhcCCCCCCEEEEecCCC-CHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeC
Confidence            4444443 3334445668899999999996 7778888882   8999999999999999999999999 6668999999


Q ss_pred             cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          193 DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       193 DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+.+.......||+||+....    +.. +++++.+.|+|||++++...
T Consensus       112 d~~~~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          112 TAPAALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             CTTGGGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             chhhhcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            998855555679999987633    455 99999999999999998664

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.59  E-value=6e-15  Score=140.19  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||||||+ |..++.+|+.  ++++|+|+|+|+.+++.|++.++..| +.++++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~i~  119 (267)
T 3kkz_A           44 LTEKSLIADIGCGT-GGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSG-LQNRVTGIVGSMDDLPFRNEELDLIW  119 (267)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcC-CCcCcEEEEcChhhCCCCCCCEEEEE
Confidence            67899999999996 6777888883  77899999999999999999999999 77889999999988776667899999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +....+.. +...+++++.++|+|||++++.+.
T Consensus       120 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          120 SEGAIYNI-GFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             ESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EcCCceec-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            87655433 789999999999999999998763

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.58  E-value=1.1e-14  Score=134.00  Aligned_cols=109  Identities=10%  Similarity=0.162  Sum_probs=89.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC----CeEEEEccccccccCCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK----RMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~----rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..++.+|||||||+ |..+..+++ ..+.++|+|+|+|+++++.|++.+...| +..    +++|+++|+...+...+.|
T Consensus        27 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~f  103 (217)
T 3jwh_A           27 QSNARRVIDLGCGQ-GNLLKILLK-DSFFEQITGVDVSYRSLEIAQERLDRLR-LPRNQWERLQLIQGALTYQDKRFHGY  103 (217)
T ss_dssp             HTTCCEEEEETCTT-CHHHHHHHH-CTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHHHHTTEEEEECCTTSCCGGGCSC
T ss_pred             hcCCCEEEEeCCCC-CHHHHHHHh-hCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcccCcceEEEeCCcccccccCCCc
Confidence            36789999999996 566677777 3556899999999999999999998888 554    8999999987655555689


Q ss_pred             ceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++....+.  .++...+++++.++|+|||++++..
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99998766543  3455899999999999999887754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.58  E-value=1e-14  Score=142.68  Aligned_cols=116  Identities=9%  Similarity=0.201  Sum_probs=96.1

Q ss_pred             HHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          120 YGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       120 ~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      ...+...+. +.++.+|||||||+ |..++.++++  .+++|+|+|+++++++.|++.++..| +..+++|+++|+.+++
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~  180 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGR-GGSMVMAHRR--FGSRVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNMLDTP  180 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCC
T ss_pred             HHHHHHHhccCCCCCEEEEecCCC-CHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhcCC
Confidence            334444444 67899999999996 5666777774  27899999999999999999999999 7789999999998877


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+.||+|+.....+.. +...+++++.++|||||++++-+
T Consensus       181 ~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          181 FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence            666789999986554333 59999999999999999999866

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.57  E-value=3.8e-14  Score=128.27  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvV  207 (535)
                      +.++++|||+|||+ |..++.++++..++++|+|+|+|+++++.|+++++..| +..+++|+++|+.+++. ..+.||+|
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHhhhccCCceEE
Confidence            46789999999997 66777787744466899999999999999999999998 67799999999987763 33569999


Q ss_pred             Eecccc---------CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALA---------GNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALV---------gm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++...         ....+...++.++.+.|+|||++++...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            976422         1123567899999999999999988754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.57  E-value=4.5e-15  Score=137.63  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC------C----cCCCeEEEEcccccc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD------E----IEKRMKFLTCDIMEV  197 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG------~----Ls~rI~Fi~GDA~el  197 (535)
                      .+.++.+|||||||+ |..+++||+   .|.+|+|||+|++|++.|++.....+      .    ...+++|+++|+.++
T Consensus        19 ~~~~~~~vLD~GCG~-G~~~~~la~---~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           19 NVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             CCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             ccCCCCEEEEeCCCC-cHhHHHHHH---CCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            346789999999996 677788988   37899999999999999998765310      0    025799999999987


Q ss_pred             ccCC-CCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeE
Q 041205          198 KEKL-GEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGV  235 (535)
Q Consensus       198 ~~dL-~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGv  235 (535)
                      +... +.||+|+..... ++ .+++..++++++++|||||+
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            7654 679999964333 34 46778899999999999998

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.3e-14  Score=140.56  Aligned_cols=108  Identities=18%  Similarity=0.138  Sum_probs=92.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccccccCC------C
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVKEKL------G  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~~dL------~  202 (535)
                      .++.+|||||||+ |..++.+|+.+.++++|+|||+|+.+++.|++.++.. | ...+++|+++|+.+++...      +
T Consensus        35 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD-TYKNVSFKISSSDDFKFLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC-CCCceEEEEcCHHhCCccccccccCC
Confidence            6889999999996 6777888863238899999999999999999999887 4 4579999999999877665      6


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+|++....++. +...++.++.++|+|||.|++-.
T Consensus       113 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          113 KIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence            79999987666555 89999999999999999998843

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.57  E-value=2.2e-14  Score=132.09  Aligned_cols=102  Identities=16%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+.+++.|++.+...| +  +++|+++|+.+++.. +.||+|++
T Consensus        36 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~~~~~D~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~-~~fD~v~~  107 (246)
T 1y8c_A           36 LVFDDYLDLACGT-GNLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQG-L--KPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTT-C--CCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---CCCcEEEEECCHHHHHHHHHHHhhcC-C--CeEEEecccccCCcc-CCceEEEE
Confidence            3789999999996 566677777   36899999999999999999998877 3  799999999887655 67999998


Q ss_pred             cc-ccCCh---hhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AA-LAGNE---EEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aA-LVgm~---edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .. ..+..   ++...+++++.++|+|||++++.
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            75 44332   78899999999999999999984

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.56  E-value=4.1e-14  Score=135.52  Aligned_cols=115  Identities=12%  Similarity=0.170  Sum_probs=94.2

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++.+|||||||+ |..++.+|+.  .|++|+|||+|+++++.|++.+...| +..+++|+++|+.+++ 
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~-  127 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGW-GATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD-  127 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC-
T ss_pred             HHHHHHHcCCCCcCEEEEECCcc-cHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCC-
Confidence            33444445567889999999996 6666777753  36799999999999999999999988 6789999999997654 


Q ss_pred             CCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        +.||+|+....++.  .+++..+++++.++|||||++++...
T Consensus       128 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          128 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             --CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence              67999997755533  36889999999999999999998663

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.56  E-value=4e-14  Score=124.90  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CC
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GE  203 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~  203 (535)
                      ..+.+.++++|||||||+ |..++.+++ ..++++|+++|+|+++++.|++.++..| +.+++ ++++|+.+..... +.
T Consensus        19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGS-GSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHCCCTTEEEEEESTTT-THHHHHHHT-TSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTGGGGGCCSC
T ss_pred             HHhcccCCCeEEEeCCCC-CHHHHHHHH-HCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHhhhhccCCC
Confidence            344567889999999996 777788887 4578999999999999999999999999 66689 8999986543333 67


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|++....+   . ..+++++.+.|+|||++++...
T Consensus        95 ~D~i~~~~~~~---~-~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           95 PDVIFIGGGLT---A-PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CSEEEECC-TT---C-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEECCccc---H-HHHHHHHHHhcCCCCEEEEEee
Confidence            99999876664   2 7899999999999999998653

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.55  E-value=3e-14  Score=136.63  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=91.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~~FDvVf  208 (535)
                      .++.+|||||||+ |..+..+++   .|.+|+|+|+++++++.|++.+...| +..+++|+++|+.+++ ...+.||+|+
T Consensus        67 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           67 PQKLRVLDAGGGE-GQTAIKMAE---RGHQVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             SSCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             CCCCEEEEeCCcc-hHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            3478999999996 677788888   38899999999999999999999998 7789999999998876 4456799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +....+..++...+++++.++|+|||++++...
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            876665457889999999999999999998663

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.55  E-value=3.6e-14  Score=129.89  Aligned_cols=100  Identities=12%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+++++++.|++.+.      .+++|+++|+.+++.. +.||+|++
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~  112 (220)
T 3hnr_A           44 KSFGNVLEFGVGT-GNLTNKLLL---AGRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVS  112 (220)
T ss_dssp             TCCSEEEEECCTT-SHHHHHHHH---TTCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHh---CCCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEE
Confidence            5789999999996 666677777   37899999999999999998865      3689999999987766 78999998


Q ss_pred             ccccCChhhH--HHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEK--AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK--~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+..++.  ..++.++.++|+|||.+++..
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            7666443444  449999999999999999875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.55  E-value=3.3e-14  Score=127.52  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvV  207 (535)
                      +.++++|||||||+ |..++.+|++   +++|+|||+|+++++.|++.++..| + .+++|+++|+.++.. ..+.||+|
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~~~~~l~~~~~~~fD~v   93 (185)
T 3mti_A           20 LDDESIVVDATMGN-GNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELILDGHENLDHYVREPIRAA   93 (185)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEESCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCcHHHHHhhccCCcCEE
Confidence            46789999999996 7777888882   8999999999999999999999999 6 789999988876542 23469999


Q ss_pred             Eecc-ccC--------ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAA-LAG--------NEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaA-LVg--------m~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++.. .+.        ...+...+++++.++|||||++++-..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            8762 111        125667889999999999999988654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=9.4e-14  Score=122.64  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=101.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+|||||||+ |..+..+++.   +.+|+|+|+++++++.|++.    .   .+++|+++|   .+...+.||+|
T Consensus        14 ~~~~~~~vLDiG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~----~---~~v~~~~~d---~~~~~~~~D~v   79 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGN-GFYCKYLLEF---ATKLYCIDINVIALKEVKEK----F---DSVITLSDP---KEIPDNSVDFI   79 (170)
T ss_dssp             HSSCCEEEEEETCTT-CTTHHHHHTT---EEEEEEECSCHHHHHHHHHH----C---TTSEEESSG---GGSCTTCEEEE
T ss_pred             CcCCCCeEEEECCCC-CHHHHHHHhh---cCeEEEEeCCHHHHHHHHHh----C---CCcEEEeCC---CCCCCCceEEE
Confidence            347889999999996 6666777773   25999999999999999988    2   478999999   34555679999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCC----Ccc-----ccCCcEEEEEEcCCCcceeeeEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPV----VEH-----ELFDFKVLSIFHPTNDVINSVVLL  278 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~----Vdp-----dl~GFeil~v~hP~~eVINSVVvA  278 (535)
                      ++....+..++...+++++.+.|+|||++++.+...-.....|.    .+.     -+.||++..+..... . ...+++
T Consensus        80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~-~-~~~l~~  157 (170)
T 3i9f_A           80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTP-Y-HFGLVL  157 (170)
T ss_dssp             EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSST-T-EEEEEE
T ss_pred             EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCC-c-eEEEEE
Confidence            98766655578899999999999999999997642211111111    111     124999987776554 2 335666


Q ss_pred             ecCCCCC
Q 041205          279 QLPKDPP  285 (535)
Q Consensus       279 RK~~~~~  285 (535)
                      ++..++|
T Consensus       158 ~~~~~~~  164 (170)
T 3i9f_A          158 KRKTSEG  164 (170)
T ss_dssp             EECCCCS
T ss_pred             ecCCCCc
Confidence            6654333

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.54  E-value=3e-14  Score=133.69  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .++..+...++..++.+|||||||+ |..+..+++.  ...+|+|+|+++++++.|++.+.  +   .+++|+++|+.++
T Consensus        31 ~~~~~l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~---~~~~~~~~d~~~~  102 (253)
T 3g5l_A           31 GEWHELKKMLPDFNQKTVLDLGCGF-GWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTT--S---PVVCYEQKAIEDI  102 (253)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEETCTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCC--C---TTEEEEECCGGGC
T ss_pred             hhHHHHHHhhhccCCCEEEEECCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhc--c---CCeEEEEcchhhC
Confidence            3455555555556889999999996 6666777772  22399999999999999999876  3   5799999999887


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...+.||+|++....+..++...+++++.++|+|||++++..
T Consensus       103 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          103 AIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            7666789999987655445789999999999999999999964

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1e-13  Score=125.51  Aligned_cols=107  Identities=13%  Similarity=0.107  Sum_probs=89.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvV  207 (535)
                      .++.+|||+|||+ |..++.++.  .+..+|+|||+|+++++.|+++++..| + ++++|+++|+.+.+..  .+.||+|
T Consensus        43 ~~~~~vLDlgcG~-G~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~fD~i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGS-GALGLEALS--RGAASVLFVESDQRSAAVIARNIEALG-L-SGATLRRGAVAAVVAAGTTSPVDLV  117 (189)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHH--TTCSEEEEEECCHHHHHHHHHHHHHHT-C-SCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred             CCCCEEEEeCCCc-CHHHHHHHH--CCCCeEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEccHHHHHhhccCCCccEE
Confidence            5789999999996 555565655  255689999999999999999999999 5 7899999999887542  3579999


Q ss_pred             EeccccCC-hhhHHHHHHHHHh--hcccCeEEEEEcc
Q 041205          208 ILAALAGN-EEEKAKILGHIRK--YMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm-~edK~~VL~eL~r--vLKPGGvLVvRsa  241 (535)
                      +++...+. .++...++..+.+  +|+|||++++...
T Consensus       118 ~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          118 LADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             EECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            99866554 4789999999999  9999999999764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.54  E-value=3.2e-14  Score=135.23  Aligned_cols=110  Identities=24%  Similarity=0.324  Sum_probs=94.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+|||||||+ |..+..+++ ..|+++|+|+|+|+.+++.|++.+...| + .+++|+++|+.+++...+.||+|
T Consensus        34 ~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~fD~v  109 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGI-GAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNG-I-KNVKFLQANIFSLPFEDSSFDHI  109 (276)
T ss_dssp             CCCTTCEEEETTCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGCCSCTTCEEEE
T ss_pred             cCCCCCeEEEecCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CCcEEEEcccccCCCCCCCeeEE
Confidence            457889999999996 566677777 3778999999999999999999999988 4 57999999999877766789999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++....+..++...++.++.++|+|||++++...
T Consensus       110 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          110 FVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9876654456788999999999999999999764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.54  E-value=4.2e-14  Score=132.16  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++.+|||||||+ |..++.+++   .+++|+|+|+|+++++.|++.+ ..+  ..+++|+++|+.+++...+.||+|
T Consensus        36 ~~~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~-~~~--~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           36 PKGEEPVFLELGVGT-GRIALPLIA---RGYRYIALDADAAMLEVFRQKI-AGV--DRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             CSSSCCEEEEETCTT-STTHHHHHT---TTCEEEEEESCHHHHHHHHHHT-TTS--CTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCcC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHh-hcc--CCceEEEEcccccCCCCCCCeeEE
Confidence            457889999999997 566677777   3789999999999999999998 322  368999999998877666779999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++....+..++...++.++.++|+|||.+++.
T Consensus       109 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          109 IVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            98766655568899999999999999999875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.54  E-value=8.9e-14  Score=135.61  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++.+|||||||+ |..++.+++.+  |++|+|+|+|+++++.|++.+...| +.++++|+++|+.+++ 
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC-
T ss_pred             HHHHHHhcCCCCcCEEEEEcccc-hHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChHHCC-
Confidence            34444445667889999999997 66667787742  7899999999999999999999999 7788999999997753 


Q ss_pred             CCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        +.||+|+.....+.  .++...+++++.++|+|||++++...
T Consensus       154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence              67999997755543  37899999999999999999998654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.54  E-value=9e-14  Score=134.90  Aligned_cols=115  Identities=10%  Similarity=0.069  Sum_probs=94.1

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+...+.+.++.+|||||||+ |..++.+|++ + |++|+|+|+|+++++.|++.+...| +.++++|+++|+.++  
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGW-GSTMRHAVAE-Y-DVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHH-H-CCEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCGGGC--
T ss_pred             HHHHHHHcCCCCcCEEEEeeccC-cHHHHHHHHh-C-CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCHHHc--
Confidence            34444445668899999999997 6666778773 2 5899999999999999999999999 778999999999875  


Q ss_pred             CCCCcceEEeccccCCh---------hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNE---------EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~---------edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       .+.||+|+.....+..         ++...+++++.++|+|||++++...
T Consensus       135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence             4679999987555333         4458999999999999999998663

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=4e-14  Score=131.80  Aligned_cols=105  Identities=18%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |..++.+++   ++.+|+|+|+|+.+++.|++.+...| ...+++|+++|+.+.+. ...||+|+..
T Consensus        66 ~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~fD~v~~~  139 (235)
T 3lcc_A           66 PLGRALVPGCGG-GHDVVAMAS---PERFVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFTWRP-TELFDLIFDY  139 (235)
T ss_dssp             CCEEEEEETCTT-CHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTTCCC-SSCEEEEEEE
T ss_pred             CCCCEEEeCCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhcCCC-CCCeeEEEEC
Confidence            456999999996 666677877   78999999999999999999998876 56789999999987653 3479999987


Q ss_pred             cccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.  .++...+++++.+.|+|||+|++...
T Consensus       140 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          140 VFFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             SSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            66544  45899999999999999999988553

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.54  E-value=1.5e-13  Score=131.72  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=87.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++   .|.+|+|+|+|+.+++.|++.+...| +  +++|+++|+.+.+. .+.||+|++
T Consensus       119 ~~~~~vLD~GcG~-G~~~~~l~~---~g~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~-~~~fD~i~~  190 (286)
T 3m70_A          119 ISPCKVLDLGCGQ-GRNSLYLSL---LGYDVTSWDHNENSIAFLNETKEKEN-L--NISTALYDINAANI-QENYDFIVS  190 (286)
T ss_dssp             SCSCEEEEESCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEeccccccc-cCCccEEEE
Confidence            5789999999996 666778888   37899999999999999999999988 4  89999999987665 567999998


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+.  .++...+++++.++|+|||++++-.
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            765543  4677899999999999999976644

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.53  E-value=5.5e-14  Score=130.20  Aligned_cols=105  Identities=18%  Similarity=0.322  Sum_probs=87.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||+ |..+..+++ ..|+++|+|+|+|+.+++.|++.+...+    +++|+++|+.+++.. +.||+|+
T Consensus        42 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~~-~~fD~v~  114 (234)
T 3dtn_A           42 DTENPDILDLGAGT-GLLSAFLME-KYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYDFE-EKYDMVV  114 (234)
T ss_dssp             SCSSCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCCCC-SCEEEEE
T ss_pred             CCCCCeEEEecCCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccCCC-CCceEEE
Confidence            46789999999997 555666767 3679999999999999999999986654    799999999887766 7899999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +....+.  .+++..+++++.++|+|||++++.+
T Consensus       115 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8765543  3455579999999999999999865

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.53  E-value=4.7e-14  Score=127.83  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||++.++..+++.   ++.+|+|+|+|+++++.|++.+...+   .+++|+++|+.+++...+.||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEE
Confidence            57899999999976555666666   67899999999999999999998877   4799999999887665667999997


Q ss_pred             cccc-CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALA-GN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALV-gm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .... ++ .++...++++++++|+|||++++..
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6444 33 4789999999999999999999866

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.52  E-value=5.4e-14  Score=132.14  Aligned_cols=109  Identities=13%  Similarity=0.188  Sum_probs=92.7

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ...+.++.+|||||||+ |..++.+++   .+.+|+|+|+|+.+++.|++.+...| + .+++|+++|+.+++...+.||
T Consensus        16 ~~~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD   89 (239)
T 1xxl_A           16 TAECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTAESLPFPDDSFD   89 (239)
T ss_dssp             HHTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBTTBCCSCTTCEE
T ss_pred             HhCcCCCCEEEEEccCc-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CCeEEEecccccCCCCCCcEE
Confidence            34568899999999996 677778877   34699999999999999999999888 4 589999999988776667899


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+.....++.++...++.++.++|+|||.+++.+
T Consensus        90 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           90 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99987555444788999999999999999999865

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.52  E-value=4.2e-14  Score=132.06  Aligned_cols=112  Identities=23%  Similarity=0.298  Sum_probs=93.0

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+.+.++.+|||||||+ |..++.+++++  +++|+|+|+|+++++.|++.+...    .+++|+++|+.+.+.+.+
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  119 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGL-GGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPEN  119 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTT-SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCTT
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCCC
Confidence            33344567889999999995 66777787743  789999999999999999887654    479999999988776667


Q ss_pred             CcceEEeccccCCh--hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNE--EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~--edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+|+.....+..  ++...++.++.++|+|||.+++...
T Consensus       120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          120 NFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            89999987665444  8999999999999999999998763

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.52  E-value=1.5e-13  Score=129.35  Aligned_cols=155  Identities=17%  Similarity=0.246  Sum_probs=112.4

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      +...+.....+.++++|||+|||+ |..++.+++...++++|+++|+++++++.|+++++..| +.++++|+++|+.+. 
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-  157 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYEG-  157 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGGC-
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhhc-
Confidence            444555556678899999999997 66667777744678999999999999999999999999 777899999999864 


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc---------ccccc--CCCCcc---ccCCcEEEE-
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG---------ARAFL--YPVVEH---ELFDFKVLS-  263 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G---------lR~fL--YP~Vdp---dl~GFeil~-  263 (535)
                      ...+.||+|+++.     ++...+++++.+.|+|||++++-.+..         ++..-  |..+..   ....|++.. 
T Consensus       158 ~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~~~~~~  232 (255)
T 3mb5_A          158 IEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKE  232 (255)
T ss_dssp             CCCCSEEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCCCCCEEEETT
T ss_pred             cCCCCcCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEeeeeeEecCC
Confidence            3445699999852     356789999999999999999865311         11122  333322   235676653 


Q ss_pred             EEcCCCcce-e--eeEEEecC
Q 041205          264 IFHPTNDVI-N--SVVLLQLP  281 (535)
Q Consensus       264 v~hP~~eVI-N--SVVvARK~  281 (535)
                      ..+|....+ +  -++++||.
T Consensus       233 ~~rp~~~~~~htg~l~~ark~  253 (255)
T 3mb5_A          233 CMRPRTTALVHTGYITFARRI  253 (255)
T ss_dssp             EEEECSCCCCCSCEEEEEEBC
T ss_pred             ccCCCcccccccEEEEEEEEe
Confidence            556665322 2  26777773

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.51  E-value=8.6e-14  Score=135.07  Aligned_cols=105  Identities=13%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---------cCC------cCCCeEEEEccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---------DDE------IEKRMKFLTCDI  194 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---------lG~------Ls~rI~Fi~GDA  194 (535)
                      .++.+|||||||+ |..+++||+   .|.+|+|||+|+.|++.|++....         .+.      ...+|+|+++|+
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~---~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFAD---RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHH---CCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            5789999999995 777889998   488999999999999999876541         000      125899999999


Q ss_pred             cccccCC-CCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          195 MEVKEKL-GEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       195 ~el~~dL-~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+++... +.||+|+..+.. ++ .++...+++++.++|||||++++
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9887754 689999965433 34 56788999999999999999864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.51  E-value=1.1e-13  Score=125.72  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCC-cc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGE-YD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~-FD  205 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+++.+++.|++.    +    ++.++++|+.++   +...+. ||
T Consensus        51 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~----~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGE-GWLLRALAD---RGIEAVGVDGDRTLVDAARAA----G----AGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHT----C----SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHH---CCCEEEEEcCCHHHHHHHHHh----c----ccccchhhHHhhcccccccCCCcc
Confidence            5679999999996 667778877   378999999999999999987    3    467889998876   333444 99


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++....+ .++...++.+++++|+|||++++...
T Consensus       119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALL-HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            999876655 57889999999999999999999764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.51  E-value=2e-13  Score=126.43  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=101.5

Q ss_pred             CCCCCEEEEEccC-CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCCCcce
Q 041205          129 VAQLKKVAFVGSG-PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSG-plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~~FDv  206 (535)
                      +.++.+||||||| + |..++.+|+. . +.+|+|+|+|+++++.|++++...| +  +++|+++|+..+. ...+.||+
T Consensus        53 ~~~~~~vLDlG~G~~-G~~~~~la~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           53 LRGGEVALEIGTGHT-AMMALMAEKF-F-NCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             CCSSCEEEEECCTTT-CHHHHHHHHH-H-CCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCSSTTTCCSCEEE
T ss_pred             cCCCCEEEEcCCCHH-HHHHHHHHHh-c-CCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchhhhhcccCceeE
Confidence            4688999999999 6 6677788874 2 7899999999999999999999998 5  8999999974332 12257999


Q ss_pred             EEeccccCC-------------------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCC-cc-ccCCcEEEEEE
Q 041205          207 IILAALAGN-------------------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVV-EH-ELFDFKVLSIF  265 (535)
Q Consensus       207 VfiaALVgm-------------------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~V-dp-dl~GFeil~v~  265 (535)
                      |++......                   ......+++++.++|+|||++++-..++...  ...+ .. .-.||++..+.
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~l~~~g~~~~~~~  204 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKL--LNVIKERGIKLGYSVKDIK  204 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHH--HHHHHHHHHHTTCEEEEEE
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhH--HHHHHHHHHHcCCceEEEE
Confidence            997622211                   1335889999999999999998854432100  0001 11 23689876654


Q ss_pred             cCCCcceeeeEEEecCC
Q 041205          266 HPTNDVINSVVLLQLPK  282 (535)
Q Consensus       266 hP~~eVINSVVvARK~~  282 (535)
                      ...+..+..++...|..
T Consensus       205 ~~~g~~~~~~l~f~~~~  221 (230)
T 3evz_A          205 FKVGTRWRHSLIFFKGI  221 (230)
T ss_dssp             ECCCC-CEEEEEEECCC
T ss_pred             ecCCCeEEEEEEEeccc
Confidence            44444445566666543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.50  E-value=3e-13  Score=119.60  Aligned_cols=116  Identities=22%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVK  198 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~  198 (535)
                      ...+...+...++.+|||||||+ |..++.+++.   +.+|+|+|+|+++++.|++.+...| +.+ +++|+++|+.+..
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGY-GVIGIALADE---VKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTT-SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTC
T ss_pred             HHHHHHHcccCCCCeEEEeCCCC-CHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECchhccc
Confidence            34444445557889999999996 6666778772   7899999999999999999999888 544 5999999997633


Q ss_pred             cCCCCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       ..+.||+|++....+. ..+...+++++.+.|+|||.+++-..
T Consensus       116 -~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          116 -KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             -TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence             3457999998765554 56788999999999999999998764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.50  E-value=1e-13  Score=132.88  Aligned_cols=101  Identities=11%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc--CCCeEEEEccccccc---------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI--EKRMKFLTCDIMEVK---------  198 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L--s~rI~Fi~GDA~el~---------  198 (535)
                      .++++|||||||   +|++|||+  .++++|++||.|++..+.|++++++.| +  .++|+++.||+.+..         
T Consensus        29 ~~a~~VLEiGtG---ySTl~lA~--~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           29 EEAEVILEYGSG---GSTVVAAE--LPGKHVTSVESDRAWARMMKAWLAANP-PAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHCSEEEEESCS---HHHHHHHT--STTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             hCCCEEEEECch---HHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCceEEEEeCchhhhcccccccch
Confidence            468999999995   79999998  348999999999999999999999999 7  789999999976531         


Q ss_pred             --------------c-CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 --------------E-KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 --------------~-dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                                    . ..+.||+||+++.+     ...++..+.+.|+|||+|++++.
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETTG
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeCC
Confidence                          0 12569999999876     24777778899999999999884

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=5e-14  Score=131.71  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=89.8

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+...++.+|||||||+ |..+..++++ +|+++|+|+|+|+++++.|++.    .   .+++|+++|+.+++ ..+
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~v~~~D~s~~~~~~a~~~----~---~~~~~~~~d~~~~~-~~~   94 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDR-YGVNVITGIDSDDDMLEKAADR----L---PNTNFGKADLATWK-PAQ   94 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHH-HCTTSEEEEESCHHHHHHHHHH----S---TTSEEEECCTTTCC-CSS
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHh----C---CCcEEEECChhhcC-ccC
Confidence            34444557889999999996 5666677773 5789999999999999999987    2   46899999998876 556


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+|++....++.++...++.++.++|+|||.+++..+
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            799999876665567899999999999999999998653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.50  E-value=1.8e-13  Score=125.20  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .....++.+|||||||+ |..+..+++   .+.+|+|+|+++++++.|++.+...+    +++|+++|+.+.+ ..+.||
T Consensus        46 ~~~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~-~~~~fD  116 (216)
T 3ofk_A           46 SLSSGAVSNGLEIGCAA-GAFTEKLAP---HCKRLTVIDVMPRAIGRACQRTKRWS----HISWAATDILQFS-TAELFD  116 (216)
T ss_dssp             HTTTSSEEEEEEECCTT-SHHHHHHGG---GEEEEEEEESCHHHHHHHHHHTTTCS----SEEEEECCTTTCC-CSCCEE
T ss_pred             HcccCCCCcEEEEcCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHhcccCC----CeEEEEcchhhCC-CCCCcc
Confidence            34456789999999996 666677777   35799999999999999999987644    7999999998876 456799


Q ss_pred             eEEeccccCCh---hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNE---EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~---edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++....+..   +....++.++.++|+|||++++...
T Consensus       117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            99987555432   3346889999999999999998664

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=3.3e-13  Score=123.46  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...|   .+++|+++|+.+++...+.||+|++
T Consensus        37 ~~~~~vLDlG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGV-GGFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             CSCCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCCCCCcEEEEEE
Confidence            4589999999997 455577777   24499999999999999999998876   5899999999876655567999998


Q ss_pred             ccc--cCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AAL--AGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aAL--Vgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...  ....++...++.++.+.|+|||++++...
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            755  32357788999999999999999988764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=2.2e-13  Score=120.57  Aligned_cols=159  Identities=15%  Similarity=0.181  Sum_probs=108.1

Q ss_pred             ccchhhHHhHHH------HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc
Q 041205          107 PYYENYVKLAKL------EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD  180 (535)
Q Consensus       107 pYy~NYv~Lirl------E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l  180 (535)
                      .|++.|......      +...+..+  +.++.+|||||||+ |..++.+++   .+.+|+|+|+|+.+++.|++.+   
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~~~~~~~~a~~~~---   88 (195)
T 3cgg_A           18 NYAQRWRNLAAAGNDIYGEARLIDAM--APRGAKILDAGCGQ-GRIGGYLSK---QGHDVLGTDLDPILIDYAKQDF---   88 (195)
T ss_dssp             CHHHHHHHHHHHCCCCCHHHHHHHHH--SCTTCEEEEETCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHh--ccCCCeEEEECCCC-CHHHHHHHH---CCCcEEEEcCCHHHHHHHHHhC---
Confidence            344555554442      22344433  36889999999996 666677877   3789999999999999999865   


Q ss_pred             CCcCCCeEEEEccccccccCCCCcceEEec-cccC-C-hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc---
Q 041205          181 DEIEKRMKFLTCDIMEVKEKLGEYDCIILA-ALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH---  254 (535)
Q Consensus       181 G~Ls~rI~Fi~GDA~el~~dL~~FDvVfia-ALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp---  254 (535)
                          .+++|+++|+.+.+...+.||+|++. ...+ + .++...++..+.+.|+|||++++....+-   .|..-+.   
T Consensus        89 ----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---~~~~~~~~~~  161 (195)
T 3cgg_A           89 ----PEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR---GWVFGDFLEV  161 (195)
T ss_dssp             ----TTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS---SCCHHHHHHH
T ss_pred             ----CCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---CcCHHHHHHH
Confidence                24789999998766555679999986 3333 3 46779999999999999999998654321   0111111   


Q ss_pred             -ccCCcEEEEEEcCCC------cceeeeEEEecC
Q 041205          255 -ELFDFKVLSIFHPTN------DVINSVVLLQLP  281 (535)
Q Consensus       255 -dl~GFeil~v~hP~~------eVINSVVvARK~  281 (535)
                       ...||++.......+      ..-.-++++||+
T Consensus       162 l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          162 AERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             HHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             HHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence             236999876654321      122346677763

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=1.2e-13  Score=129.55  Aligned_cols=106  Identities=17%  Similarity=0.134  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--ccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~dL~~FDvV  207 (535)
                      .++.+|||||||+ |..++.+++  ....+|+|||+|+++++.|++.++..|   .+++|+++|+.++  +...+.||+|
T Consensus        59 ~~~~~vLDiGcGt-G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           59 SKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCeEEEEeccC-CHHHHHHHh--cCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEEE
Confidence            5789999999996 666677776  244599999999999999999988877   5799999999887  5555679999


Q ss_pred             Eeccc---cC-C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAAL---AG-N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaAL---Vg-m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++..   .+ . ..++..++.+++++|||||+|++-+.
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            98211   11 1 45677899999999999999998664

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.49  E-value=1.1e-13  Score=126.73  Aligned_cols=106  Identities=20%  Similarity=0.277  Sum_probs=88.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc----CCCeEEEEccccccccCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI----EKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L----s~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .++.+|||||||+ |..++.+++   .+.+|+|+|+++.+++.|++.+...| +    ..+++|+++|+.+++...+.||
T Consensus        29 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGS-GKISLELAS---KGYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecccccCCCCCcee
Confidence            5789999999996 667778878   37899999999999999999998877 4    3479999999988776667799


Q ss_pred             eEEeccccCChhhHH---HHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKA---KILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~---~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++....+..++..   .+++++.+.|+|||++++..
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            999876554333444   99999999999999999864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.49  E-value=2.8e-13  Score=119.63  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+.+.++.+|||||||+ |..++.+++.   +.+|+++|+|+++++.|++.+...| +..+++|+++|+.+.....+.||
T Consensus        28 ~~~~~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D  102 (192)
T 1l3i_A           28 LAEPGKNDVAVDVGCGT-GGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKIPDID  102 (192)
T ss_dssp             HHCCCTTCEEEEESCTT-SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTSCCEE
T ss_pred             hcCCCCCCEEEEECCCC-CHHHHHHHHh---cCEEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecCHHHhcccCCCCC
Confidence            34567899999999997 6777778773   3899999999999999999999988 66799999999977333335799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++....   .+...+++.+.+.|+|||.+++...
T Consensus       103 ~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          103 IAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             EEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCch---HHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99987554   4678999999999999999998654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.49  E-value=1.2e-13  Score=132.46  Aligned_cols=109  Identities=19%  Similarity=0.269  Sum_probs=80.4

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCC-c----------------------
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDE-I----------------------  183 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~-L----------------------  183 (535)
                      +..++++|||||||+ |.-++.++.   .|+ +|+|+|+|+.+++.|++.++.... +                      
T Consensus        52 ~~~~g~~vLDiGCG~-G~~~~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~  127 (263)
T 2a14_A           52 GGLQGDTLIDIGSGP-TIYQVLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK  127 (263)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCCCCceEEEeCCCc-cHHHHHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhH
Confidence            346789999999998 444445545   454 799999999999999987754320 1                      


Q ss_pred             ----CCCeE-EEEcccccc-cc---CCCCcceEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          184 ----EKRMK-FLTCDIMEV-KE---KLGEYDCIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       184 ----s~rI~-Fi~GDA~el-~~---dL~~FDvVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                          ..+|. |+++|+.+. +.   ..+.||+|+.....+.    .++...++.+++++|||||.|++..
T Consensus       128 ~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          128 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                01344 999999863 21   2457999998644432    3678899999999999999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.49  E-value=4.6e-13  Score=125.33  Aligned_cols=104  Identities=22%  Similarity=0.430  Sum_probs=85.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++   .|.+|+|+|+|+++++.|++.+...| +  +++|+++|+.+++.+ +.||+|++
T Consensus        40 ~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           40 REVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERN-L--KIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEECChhhcccC-CCccEEEE
Confidence            5678999999997 566677777   37899999999999999999998877 3  799999999876543 57999996


Q ss_pred             c-cc-cCC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 A-AL-AGN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 a-AL-Vgm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      . +. ... .++...+++++.++|+|||++++...
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            4 22 222 46789999999999999999998643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.48  E-value=4e-13  Score=127.08  Aligned_cols=98  Identities=14%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+.       +++|+++|+.+++. .+.||+|++
T Consensus        49 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~-~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGT-GMHLRHLAD---SFGTVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFSL-GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHTT---TSSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred             CCCCcEEEeCCcC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCCc-cCCcCEEEE
Confidence            4679999999996 666677777   36799999999999999998743       58999999988665 467999998


Q ss_pred             cc-ccCC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AA-LAGN---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aA-LVgm---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .. .++.   .++...+++++.++|+|||+|++.
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            75 4433   257789999999999999999995

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.48  E-value=1.4e-13  Score=132.89  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=93.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .+.++.+|||||||+ |..++.+++. ++ +++|+|+|+|+.+++.|++.+...+ .  +++|+++|+.+++.+ +.||+
T Consensus        19 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~   92 (284)
T 3gu3_A           19 KITKPVHIVDYGCGY-GYLGLVLMPL-LPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSEFLEGDATEIELN-DKYDI   92 (284)
T ss_dssp             CCCSCCEEEEETCTT-THHHHHHTTT-SCTTCEEEEEESCHHHHHHHHHHHHSSS-S--EEEEEESCTTTCCCS-SCEEE
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcchhhcCcC-CCeeE
Confidence            457899999999996 7777888873 45 6899999999999999999998877 3  899999999987653 57999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      |++....+..++...++.+++++|+|||.+++..+.
T Consensus        93 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            998766655578899999999999999999987654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.48  E-value=1.3e-13  Score=133.53  Aligned_cols=118  Identities=12%  Similarity=0.204  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC--CCeEEEEccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE--KRMKFLTCDI  194 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls--~rI~Fi~GDA  194 (535)
                      ..+...+...+. .++.+|||||||+ |..++.+++   .|.+|+|||+|+.+++.|++.+...| ++  .+++|+++|+
T Consensus        69 ~~~~~~~~~~~~-~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~  142 (299)
T 3g2m_A           69 TSEAREFATRTG-PVSGPVLELAAGM-GRLTFPFLD---LGWEVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHHHHC-CCCSCEEEETCTT-TTTHHHHHT---TTCCEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBT
T ss_pred             cHHHHHHHHhhC-CCCCcEEEEeccC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCch
Confidence            344555555554 3456999999996 677778877   37899999999999999999998877 33  6899999999


Q ss_pred             cccccCCCCcceEEec-cccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          195 MEVKEKLGEYDCIILA-ALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       195 ~el~~dL~~FDvVfia-ALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+++. .+.||+|++. ...++  .++...+|+++.++|+|||+|++...
T Consensus       143 ~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          143 SAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             TBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            88765 4679988864 33344  34679999999999999999999764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.48  E-value=7.9e-14  Score=136.26  Aligned_cols=108  Identities=19%  Similarity=0.286  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-------------------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-------------------------  184 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-------------------------  184 (535)
                      .++++|||||||+ |..++.+|+ .+++.+|+|||+|+.+++.|++.++..+ ..                         
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~-~~~~~~v~gvDis~~~i~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIAC-KWGPSRMVGLDIDSRLIHSARQNIRHYL-SEELRLPPQTLEGDPGAEGEEGTTTVR  121 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHH-HTCCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHHHHhhh-hhhcccccccccccccccccccccccc
Confidence            3689999999996 677778887 4678999999999999999999987655 22                         


Q ss_pred             --------------------------------CCeEEEEccccccc-----cCCCCcceEEeccccCC------hhhHHH
Q 041205          185 --------------------------------KRMKFLTCDIMEVK-----EKLGEYDCIILAALAGN------EEEKAK  221 (535)
Q Consensus       185 --------------------------------~rI~Fi~GDA~el~-----~dL~~FDvVfiaALVgm------~edK~~  221 (535)
                                                      .+|+|+++|+.+..     ...+.||+|++.....+      .++..+
T Consensus       122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                            58999999987533     23467999998765422      237889


Q ss_pred             HHHHHHhhcccCeEEEEEc
Q 041205          222 ILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       222 VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++++++++|+|||+|++..
T Consensus       202 ~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            9999999999999999964

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.47  E-value=6.5e-13  Score=140.32  Aligned_cols=153  Identities=15%  Similarity=0.165  Sum_probs=111.7

Q ss_pred             HHhHhhhhHHHhHhhccCCCccccccCccc--hhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC
Q 041205           80 RAESLLELEFATYLSKISLPLNDLNRFPYY--ENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS  157 (535)
Q Consensus        80 ~AE~~LE~h~A~~Lls~~~pl~~L~~FpYy--~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G  157 (535)
                      -+..+|..-|.+.+.   ++ +.|+.+.-|  ..|.++...-+..+...+.+.++++|||||||. |..++.+|.. .+.
T Consensus       124 ~~~~Il~~~Y~r~V~---~~-~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~-~g~  197 (438)
T 3uwp_A          124 LLRHILQQVYNHSVT---DP-EKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAA-TNC  197 (438)
T ss_dssp             HHHHHHHHHHHHHCS---CG-GGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHH-CCC
T ss_pred             HHHHHHHHHHhhcCC---CH-HHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHH-CCC
Confidence            334555555555553   22 345554322  236777766666666767788999999999995 6777788763 333


Q ss_pred             cEEEEEeCChhHHHHHHHHH-------hhcCCcC-CCeEEEEccccccccCC--CCcceEEeccccCChhhHHHHHHHHH
Q 041205          158 THFDNIDIDETANNLARRIV-------SSDDEIE-KRMKFLTCDIMEVKEKL--GEYDCIILAALAGNEEEKAKILGHIR  227 (535)
Q Consensus       158 a~VtGIDIDpeAIelAR~li-------~~lG~Ls-~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~  227 (535)
                      .+|+|||++++++++|++++       +..| +. .+|+|++||+.++++..  ..||+||+..... .++....|.+++
T Consensus       198 ~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~  275 (438)
T 3uwp_A          198 KHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERF  275 (438)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECcccCCccccccCCccEEEEccccc-CchHHHHHHHHH
Confidence            46999999999999999865       3456 43 68999999998876543  4699999865432 378899999999


Q ss_pred             hhcccCeEEEEEc
Q 041205          228 KYMKEGGVLLVRS  240 (535)
Q Consensus       228 rvLKPGGvLVvRs  240 (535)
                      +.|||||+|++-.
T Consensus       276 RvLKPGGrIVssE  288 (438)
T 3uwp_A          276 ANMKEGGRIVSSK  288 (438)
T ss_dssp             TTSCTTCEEEESS
T ss_pred             HcCCCCcEEEEee
Confidence            9999999999854

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.47  E-value=3.1e-13  Score=122.48  Aligned_cols=103  Identities=13%  Similarity=0.239  Sum_probs=87.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++ +|||||||+ |..+..+++   .|.+|+|+|+|+.+++.|++.+...| +  +++|+++|+.+.+...+.||+|++
T Consensus        29 ~~~-~vLdiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           29 PQG-KILCLAEGE-GRNACFLAS---LGYEVTAVDQSSVGLAKAKQLAQEKG-V--KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             CSS-EEEECCCSC-THHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHT-C--CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCC-CEEEECCCC-CHhHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcChhhcCCCcCCccEEEE
Confidence            455 999999996 666678877   37899999999999999999998888 3  899999999887655567999998


Q ss_pred             ccccCC-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGN-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      . ..++ .++...++.++.+.|+|||++++...
T Consensus       101 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A          101 I-FCHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             E-CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             E-hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4 4444 57889999999999999999998763

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.47  E-value=2.5e-13  Score=129.15  Aligned_cols=108  Identities=17%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVf  208 (535)
                      .++.+|||||||++.++ +.+++.  +..+|+|+|+++.+++.|++.+...| +..+++|+++|+.+.+. ..+.||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~-~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDL-LKYERA--GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             CTTCEEEEETCTTTTTH-HHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHH-HHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEEECCccccccCCCCCcCEEE
Confidence            67899999999975555 557663  45699999999999999999999888 66789999999987765 346799999


Q ss_pred             eccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +....+.    .++...+++++.++|+|||++++..+
T Consensus       139 ~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          139 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            7654432    57789999999999999999998764

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.47  E-value=3.7e-13  Score=127.53  Aligned_cols=121  Identities=17%  Similarity=0.039  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh------HHHHHHHHHhhcCCcCCCeEEEE
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET------ANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe------AIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      .-...+...+.+.++++|||||||+ |..++.++++..++++|+|+|+|++      +++.|++.+...| +..+++|++
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~  107 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQ-GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHF  107 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTT-SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEE
Confidence            3344444555668899999999996 6666778774335689999999998      9999999999988 677999999


Q ss_pred             cc---ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          192 CD---IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       192 GD---A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|   ...++...+.||+|++....+..++...+++.+.++++|||.+++.+
T Consensus       108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          108 NTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             SCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             CChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            98   44455555679999987655444556667777777777799999865

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.46  E-value=4.4e-13  Score=123.92  Aligned_cols=108  Identities=19%  Similarity=0.164  Sum_probs=88.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvV  207 (535)
                      .++.+|||||||+ |..++.+|+ ..|+++|+|||+++++++.|++.+...| + .+++|+++|+.+++  ...+.||+|
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCc-CHHHHHHHH-HCCCCCEEEEEcCHHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            5688999999996 666677877 4678999999999999999999999988 5 78999999998865  344579999


Q ss_pred             EeccccCChh--------hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEE--------EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~e--------dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++.....+..        ....++..+.++|+|||+|++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            9864332201        126899999999999999999753

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.46  E-value=1.8e-13  Score=125.73  Aligned_cols=102  Identities=16%  Similarity=0.232  Sum_probs=84.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+..      +++|+++|+.+. ...+.||+|+
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~-~~~~~fD~v~  108 (250)
T 2p7i_A           40 FFRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGRLKD------GITYIHSRFEDA-QLPRRYDNIV  108 (250)
T ss_dssp             GCCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGC-CCSSCEEEEE
T ss_pred             hcCCCcEEEECCCC-CHHHHHHHH---hCCcEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHc-CcCCcccEEE
Confidence            35788999999996 666777877   356899999999999999987543      689999999876 3446799999


Q ss_pred             eccccCChhhHHHHHHHHH-hhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIR-KYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~-rvLKPGGvLVvRsa  241 (535)
                      +...++..++...+++++. ++|||||.+++..+
T Consensus       109 ~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          109 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            8766654578899999999 99999999998764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.46  E-value=3.5e-13  Score=123.15  Aligned_cols=106  Identities=20%  Similarity=0.229  Sum_probs=87.3

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ...+.+.++.+|||||||+ |+.++.+++.   +++|+++|+|+++++.|++.++..| + .+++|+++|+.+.....+.
T Consensus        70 ~~~l~~~~~~~vLdiG~G~-G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           70 TELLELTPQSRVLEIGTGS-GYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLD-L-HNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCC
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-C-CceEEEECCcccCCccCCC
Confidence            3345567899999999996 7777888883   7899999999999999999999998 5 4899999999876655567


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|++....+..+      +.+.+.|+|||++++--.
T Consensus       144 ~D~i~~~~~~~~~~------~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          144 FDAIIVTAAPPEIP------TALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             EEEEEESSBCSSCC------THHHHTEEEEEEEEEEEC
T ss_pred             ccEEEEccchhhhh------HHHHHhcccCcEEEEEEc
Confidence            99999986664322      268899999999998654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.46  E-value=5.2e-13  Score=134.40  Aligned_cols=129  Identities=22%  Similarity=0.263  Sum_probs=95.9

Q ss_pred             cCccchhhHHhHHHH-----------H-HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH
Q 041205          105 RFPYYENYVKLAKLE-----------Y-GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL  172 (535)
Q Consensus       105 ~FpYy~NYv~LirlE-----------~-~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel  172 (535)
                      .+.||+.|...-..+           + ..+.....+.++++|||||||+ |.-++.+|++  ...+|+|||+++ +++.
T Consensus        26 d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~gvD~s~-~~~~  101 (340)
T 2fyt_A           26 DGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGT-GILSMFAAKA--GAKKVLGVDQSE-ILYQ  101 (340)
T ss_dssp             ----CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTT-SHHHHHHHHT--TCSEEEEEESST-HHHH
T ss_pred             hhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccC-cHHHHHHHHc--CCCEEEEEChHH-HHHH
Confidence            455777776542211           1 3444444457889999999996 5666778772  345999999997 9999


Q ss_pred             HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc---cCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          173 ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL---AGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       173 AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL---Vgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |++.++..| +.++|+|+++|+.+++.+.+.||+|+....   .........++..+.+.|+|||+++.
T Consensus       102 a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          102 AMDIIRLNK-LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             HHHHHHHTT-CTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             HHHHHHHcC-CCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            999999999 778999999999887666567999997642   11145678899999999999999983

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=2.9e-13  Score=125.12  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=90.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ..+...+...++.+|||||||+ |..+..++++   +. +|+|+|+|+++++.|++....     .+++|+++|+.+++.
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~  103 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH---GASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHL  103 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTT-CHHHHHHHHT---TCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCC
T ss_pred             HHHHHhccccCCCEEEEEcCcC-CHHHHHHHHC---CCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccC
Confidence            3455555556889999999996 5566777772   55 999999999999999987543     368999999988765


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..+.||+|++....+..++...+++++.++|+|||++++...
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            556799999876554456889999999999999999998654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.46  E-value=9.8e-14  Score=132.65  Aligned_cols=101  Identities=9%  Similarity=0.067  Sum_probs=82.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhh---cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCC-
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQ---HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLG-  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~---~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~-  202 (535)
                      .++.+|||||||+ |+++++||+.   ..++++|+|||+++++++.|+      + +..+|+|++||+.+.   +...+ 
T Consensus        80 ~~~~~VLDiG~Gt-G~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~-~~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           80 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S-DMENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             cCCCEEEEEeCCC-CHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------c-cCCceEEEECcchhHHHHHhhccC
Confidence            4678999999996 7777888884   257899999999999999887      2 336899999999874   32223 


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHh-hcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRK-YMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~r-vLKPGGvLVvRsa  241 (535)
                      .||+|++++..   .+...+|.++.+ +|+|||+|++.+.
T Consensus       152 ~fD~I~~d~~~---~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          152 AHPLIFIDNAH---ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSSEEEEESSC---SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCCEEEECCch---HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            69999998764   477889999997 9999999999763

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.46  E-value=2e-13  Score=121.62  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=87.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~~FDvV  207 (535)
                      ..++.+|||||||+ |..++.++++  +..+|+|+|+|+++++.|+++++..| +.++++|+++|+.+.. ...+.||+|
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~i  104 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLV  104 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcHHHhHHhhcCCCCEE
Confidence            46789999999996 6666777773  55799999999999999999999998 6678999999998743 233569999


Q ss_pred             EeccccCChhhHHHHHHHHH--hhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIR--KYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~--rvLKPGGvLVvRsa  241 (535)
                      +++...+ ......++..+.  ++|+|||++++...
T Consensus       105 ~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          105 FLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             EECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            9874431 245677888887  99999999998654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.46  E-value=6.2e-13  Score=123.96  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=89.1

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+...++.+|||||||+ |..+..++++.  ..+|+++|+++.+++.|++.+...    .+++|+++|+.+++...+
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  157 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGI-GRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTT-THHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSS
T ss_pred             HHHhhcccCCCEEEEECCCc-CHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCCCC
Confidence            33334446789999999996 55666666632  568999999999999999987654    479999999988766666


Q ss_pred             CcceEEeccccCCh--hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNE--EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~--edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+|++....+..  ++...++.++.++|+|||++++..
T Consensus       158 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            79999987665443  678999999999999999999876

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.45  E-value=2.4e-13  Score=138.10  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-----C-CcCCCeEEEEcccccc-----
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-----D-EIEKRMKFLTCDIMEV-----  197 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-----G-~Ls~rI~Fi~GDA~el-----  197 (535)
                      +.++.+|||||||+ |..++.+++.+.++++|+|+|+++++++.|++.++..     | ....+++|+++|+.++     
T Consensus        81 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGT-GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTT-SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred             CCCCCEEEEecCcc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence            46789999999996 6777888875447899999999999999999998765     3 1126899999999886     


Q ss_pred             -ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 -KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 -~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       +...+.||+|+.....++.+++..++.+++++|||||+|++.+
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             5555679999987666556789999999999999999999865

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.45  E-value=6.8e-13  Score=129.70  Aligned_cols=106  Identities=17%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++ .+|+.+|+++|++ .+++.|++.+...| +.++|+|+.+|+.+.+.+ +.||+|++
T Consensus       164 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~~-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASH-GLFGIAVAQ-HNPNAEIFGVDWA-SVLEVAKENARIQG-VASRYHTIAGSAFEVDYG-NDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTT-CHHHHHHHH-HCTTCEEEEEECH-HHHHHHHHHHHHHT-CGGGEEEEESCTTTSCCC-SCEEEEEE
T ss_pred             CCCCEEEEECCCc-CHHHHHHHH-HCCCCeEEEEecH-HHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCcEEEE
Confidence            6789999999996 566667777 3688999999999 99999999999988 677899999999765333 34999998


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+.  .++..++++++++.|+|||.+++.+
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            655543  4667899999999999999887755

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.45  E-value=3.2e-13  Score=127.85  Aligned_cols=108  Identities=12%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~FDv  206 (535)
                      .++.+|||||||+ |..++.+|+ ..|++.|+|||+++++++.|++.++..| + .+++|+++|+.++.   .+.+.||.
T Consensus        33 ~~~~~vLDiGcG~-G~~~~~lA~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-l-~nv~~~~~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           33 REAPVTLEIGFGM-GASLVAMAK-DRPEQDFLGIEVHSPGVGACLASAHEEG-L-SNLRVMCHDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             SCCCEEEEESCTT-CHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHTT-C-SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred             CCCCeEEEEeeeC-hHHHHHHHH-HCCCCeEEEEEecHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHcCCCChhe
Confidence            4678999999995 777788888 4788999999999999999999999988 5 57999999998852   34567999


Q ss_pred             EEeccccCC--hhh-H-----HHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN--EEE-K-----AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm--~ed-K-----~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++.....+  ... +     ..+++.+.++|||||+|++.+.
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            997532221  111 1     2599999999999999999764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.45  E-value=5.5e-13  Score=127.46  Aligned_cols=115  Identities=14%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             HHHHHhhCCC-CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVA-QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~-~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      .++..+..+. ++.+|||||||+ |..++.+|++  ..++|+|||+|+.+++.|++++...| +.++++|+++|+.+...
T Consensus        38 ~ll~~~~~~~~~~~~vLDlG~G~-G~~~~~la~~--~~~~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~~~~  113 (259)
T 3lpm_A           38 VLLAKFSYLPIRKGKIIDLCSGN-GIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKKITD  113 (259)
T ss_dssp             HHHHHHCCCCSSCCEEEETTCTT-THHHHHHHTT--CCCEEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGGGGG
T ss_pred             HHHHHHhcCCCCCCEEEEcCCch-hHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHHhhh
Confidence            3444455667 899999999997 6666788773  33499999999999999999999999 78899999999988764


Q ss_pred             C--CCCcceEEecccc------CC--------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 K--LGEYDCIILAALA------GN--------------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 d--L~~FDvVfiaALV------gm--------------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .  .+.||+|++..-.      +.              ..+...+++.+.+.|+|||++++-
T Consensus       114 ~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          114 LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            3  3579999985211      11              134578999999999999999884

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.45  E-value=3.2e-13  Score=122.48  Aligned_cols=102  Identities=15%  Similarity=0.181  Sum_probs=84.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||||||+ |..+..++++   +.+|+|+|+++.+++.|++    .| . .+++|+++|+.++ ...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~-~-~~~~~~~~d~~~~-~~~~~~D~v~  112 (218)
T 3ou2_A           44 GNIRGDVLELASGT-GYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HG-L-DNVEFRQQDLFDW-TPDRQWDAVF  112 (218)
T ss_dssp             TTSCSEEEEESCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GC-C-TTEEEEECCTTSC-CCSSCEEEEE
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cC-C-CCeEEEecccccC-CCCCceeEEE
Confidence            56788999999996 6666778773   7899999999999999998    45 2 5799999999876 4556799999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +....+.  .+....+++++.++|+|||.+++...
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            8765544  33359999999999999999988753

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.45  E-value=9.4e-13  Score=131.51  Aligned_cols=113  Identities=20%  Similarity=0.279  Sum_probs=91.6

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+.......++.+|||||||+ |..++.+++ .+|+.+|+++|+ +.+++.|++.++..| +.++|+|+.+|+.+.+  .
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~--~  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--Y  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTT-CHHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CTTTEEEEECCTTTSC--C
T ss_pred             HHHHhcCCCCCCEEEEECCcc-cHHHHHHHH-HCCCCeEEEEec-HHHHHHHHHHHHhcC-CCCCEEEEeCccccCC--C
Confidence            334444567889999999996 566677777 378899999999 999999999999988 7788999999997653  3


Q ss_pred             CCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+|++....+.  .++..++|+++++.|+|||+|++.+
T Consensus       255 ~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            44699998766643  3448999999999999999997755

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=3.5e-13  Score=124.76  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=87.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .|++|+|+|+++.+++.|++..   .  ..+++|+++|+.+++...+.||+|++
T Consensus        52 ~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           52 KKEAEVLDVGCGD-GYGTYKLSR---TGYKAVGVDISEVMIQKGKERG---E--GPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHTTT---C--BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhc---c--cCCceEEEcchhcCCCCCCCccEEEE
Confidence            5789999999996 666777877   3789999999999999999874   2  25799999999987766678999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+..++...++.++.++|+|||++++..
T Consensus       123 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          123 INSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             ESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            7666555788999999999999999999866

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.44  E-value=2.8e-13  Score=125.45  Aligned_cols=106  Identities=9%  Similarity=0.165  Sum_probs=84.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC--CCC-cce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK--LGE-YDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d--L~~-FDv  206 (535)
                      ++.+|||+|||++.+ ++.++.+  ...+|+|||+|+++++.|+++++..| +. ++++|+++|+.+....  .+. ||+
T Consensus        53 ~~~~vLDlGcGtG~~-~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSL-GFEALSR--QAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHH-HHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHH-HHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhC-CCccceEEEECCHHHHHHhhccCCCCCE
Confidence            578999999997544 4554452  33699999999999999999999988 64 6899999999876543  357 999


Q ss_pred             EEeccccCChhhHHHHHHHH--HhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHI--RKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL--~rvLKPGGvLVvRsa  241 (535)
                      |+++...+ ..+...++..+  .++|+|||++++...
T Consensus       129 I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~  164 (201)
T 2ift_A          129 VFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETE  164 (201)
T ss_dssp             EEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            99875533 35678899999  668999999988654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=1e-13  Score=132.06  Aligned_cols=106  Identities=12%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...++..++.+|||||||+ |..++.+++   ++++|+|+|+|+.+++.|++..        +++|+++|+.+++...+
T Consensus        26 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           26 IINLLNLPKGSVIADIGAGT-GGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-SHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCSCTT
T ss_pred             HHHHhCCCCCCEEEEEcCcc-cHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCCCCC
Confidence            34444557899999999996 677788877   7899999999999988765432        68999999988776667


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+|++....+..++...++++++++|| ||.+++-+.
T Consensus        94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             CBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             CEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence            89999987666545889999999999999 996666553

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.44  E-value=7.8e-13  Score=129.01  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|+|||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|+|++||+.+...+...||+|++
T Consensus        20 ~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDH-AYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCST-THHHHHHHH-TTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccccccccCEEEE
Confidence            5789999999996 777888888 3566799999999999999999999999 888999999999886654346999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccc---cccccCCCCccccCCcEEEEEEc-CCCcceeeeEEEecC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG---ARAFLYPVVEHELFDFKVLSIFH-PTNDVINSVVLLQLP  281 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G---lR~fLYP~Vdpdl~GFeil~v~h-P~~eVINSVVvARK~  281 (535)
                      +..-|  .--.+++....++++++|.|++-.-.+   +|..++      -.||.+....- -.+.-+..+++++++
T Consensus        97 aGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~------~~Gf~i~~E~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A           97 CGMGG--RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLA------ANDFEIVAEDILTENDKRYEILVVKHG  164 (230)
T ss_dssp             EEECH--HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH------HTTEEEEEEEEEEC--CEEEEEEEEEC
T ss_pred             eCCch--HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHH------HCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            74432  457789999999999999998865332   111121      26999875332 222233457777764

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.44  E-value=1e-12  Score=122.93  Aligned_cols=110  Identities=18%  Similarity=0.314  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCC------------------------
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDE------------------------  182 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~------------------------  182 (535)
                      +..++.+|||||||+ |..++.+++   .+ .+|+|+|+++.+++.|++.+...+.                        
T Consensus        53 ~~~~~~~vLDlGcG~-G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
T 2i62_A           53 GAVKGELLIDIGSGP-TIYQLLSAC---ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK  128 (265)
T ss_dssp             SSCCEEEEEEESCTT-CCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred             cccCCCEEEEECCCc-cHHHHHHhh---cccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence            336789999999997 555566666   34 4999999999999999998866430                        


Q ss_pred             ---cCCCe-EEEEcccccccc-CC---CCcceEEeccccC----ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          183 ---IEKRM-KFLTCDIMEVKE-KL---GEYDCIILAALAG----NEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       183 ---Ls~rI-~Fi~GDA~el~~-dL---~~FDvVfiaALVg----m~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                         +..++ +|+++|+.+... ..   +.||+|+....++    ..++...++.++.++|+|||+|++...
T Consensus       129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence               00138 999999987543 23   5699999865554    346889999999999999999998763

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.44  E-value=3.9e-13  Score=126.35  Aligned_cols=105  Identities=12%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~F  204 (535)
                      .+.++++|||||||+ |..+..+|+. .++++|+|||+|+.+++.+.+.++..    .++.++++|+.+.   ....+.|
T Consensus        54 ~~~~g~~VLDlGcGt-G~~~~~la~~-~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAAS-GTTVSHLADI-VDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTT-SHHHHHHHHH-TTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccccce
Confidence            457889999999997 5666777773 44679999999999988777766653    3689999998763   1112579


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+++...  ..+...++.+++++|||||+|++..
T Consensus       128 D~V~~~~~~--~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDIAQ--KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEECCCS--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeccC--hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999987322  1344556999999999999998864

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.44  E-value=1.5e-13  Score=134.16  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=81.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|||||||+ |..+..|++   .+.+|+|||+|++|++.|++     .   .+|+|+++|+.+++.+.+.||+|++
T Consensus        38 ~~~~~vLDvGcGt-G~~~~~l~~---~~~~v~gvD~s~~ml~~a~~-----~---~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGS-GQASLGLAE---FFERVHAVDPGEAQIRQALR-----H---PRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTT-TTTHHHHHT---TCSEEEEEESCHHHHHTCCC-----C---TTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCC-CHHHHHHHH---hCCEEEEEeCcHHhhhhhhh-----c---CCceeehhhhhhhcccCCcccEEEE
Confidence            3567999999996 677788887   46899999999999987653     1   4799999999998888788999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....|+ .+..+++.+++|+|||||+|++-.
T Consensus       106 ~~~~h~-~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHW-FDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTT-CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhH-hhHHHHHHHHHHHcCCCCEEEEEE
Confidence            766665 356789999999999999998754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.44  E-value=7.6e-13  Score=123.88  Aligned_cols=106  Identities=15%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |..++.++++ . +.+|+|+|+|+.+++.|++.+...|  ..+++|+++|+.+++...+.||+|++.
T Consensus        79 ~~~~vLDiGcG~-G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGI-GRITKRLLLP-L-FREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTT-THHHHHTTTT-T-CSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCC-CHHHHHHHHh-c-CCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            589999999996 6666777663 2 5799999999999999999988875  257999999998877665679999987


Q ss_pred             cccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.  .++...++.++.++|+|||++++.+.
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            65543  23456999999999999999998653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.43  E-value=7.9e-13  Score=123.64  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvV  207 (535)
                      .++.+|||||||+ |..++.+|+ ..|++.|+|||+++++++.|++.+...| + .+++|+++|+.+++  .+.+.||.|
T Consensus        37 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-~-~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCC-CHHHHHHHH-HCCCCCEEEEEechHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            4678999999996 667778888 4689999999999999999999999988 5 67999999998765  344679999


Q ss_pred             EeccccCC-hh-------hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGN-EE-------EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm-~e-------dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-.+ ..       ....+++++.++|+|||.|++.+.
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            87432211 00       136899999999999999998763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.43  E-value=8.3e-13  Score=130.31  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||+ |..++.+++ .+|+.+++++|+ +++++.|++.+...| +.++|+|+.+|..+ +.+. .||+|+
T Consensus       167 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~p~-~~D~v~  240 (332)
T 3i53_A          167 WAALGHVVDVGGGS-GGLLSALLT-AHEDLSGTVLDL-QGPASAAHRRFLDTG-LSGRAQVVVGSFFD-PLPA-GAGGYV  240 (332)
T ss_dssp             CGGGSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCCC-SCSEEE
T ss_pred             CCCCCEEEEeCCCh-hHHHHHHHH-HCCCCeEEEecC-HHHHHHHHHhhhhcC-cCcCeEEecCCCCC-CCCC-CCcEEE
Confidence            35678999999996 566667777 478999999999 999999999999988 78899999999863 2222 799999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +....+.  .++..++|+++++.|+|||+|++.+
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            8766654  4446999999999999999998865

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.43  E-value=7e-13  Score=127.02  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=86.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--cCCCeEEEEccccccc---cCCCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--IEKRMKFLTCDIMEVK---EKLGE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--Ls~rI~Fi~GDA~el~---~dL~~  203 (535)
                      ..++.+|||||||+ |..++.+++   .|.+|+|+|+|+++++.|++.+...+.  ...++.|..+|+.+++   ...+.
T Consensus        55 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  130 (293)
T 3thr_A           55 QHGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG  130 (293)
T ss_dssp             HTTCCEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             ccCCCEEEEecCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCC
Confidence            35789999999996 677788888   377999999999999999998754431  1147899999998876   45578


Q ss_pred             cceEEec-cccCChhh-------HHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILA-ALAGNEEE-------KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfia-ALVgm~ed-------K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|++. ...+..++       ...++++++++|+|||++++...
T Consensus       131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999985 33332244       99999999999999999998654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.43  E-value=7.4e-13  Score=120.75  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      +.+...+..+.  .++.+|||||||++.++ ..+      +. +|+|+|+|+++++.|++..       .+++|+++|+.
T Consensus        24 ~~~~~~l~~~~--~~~~~vLdiG~G~G~~~-~~l------~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~   87 (211)
T 2gs9_A           24 AEEERALKGLL--PPGESLLEVGAGTGYWL-RRL------PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGE   87 (211)
T ss_dssp             HHHHHHHHTTC--CCCSEEEEETCTTCHHH-HHC------CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTT
T ss_pred             HHHHHHHHHhc--CCCCeEEEECCCCCHhH-HhC------CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccc
Confidence            34445555443  37899999999975433 332      55 9999999999999999876       25799999998


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++...+.||+|++....+..++...++.++.++|+|||.+++...
T Consensus        88 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           88 ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             SCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            8776666799999876665557889999999999999999998764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.43  E-value=7.8e-13  Score=119.38  Aligned_cols=138  Identities=9%  Similarity=0.164  Sum_probs=97.7

Q ss_pred             hHHHhHhhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 041205           87 LEFATYLSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDID  166 (535)
Q Consensus        87 ~h~A~~Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDID  166 (535)
                      .+|-..-....+    ...|.||..|..+.+    .+..+  +.++.+|||||||+ |..++.+++. .+ .+|+|+|+|
T Consensus         8 ~~W~~~y~~~~~----~~~~~~~~~~~~~~~----~l~~~--~~~~~~vLdiGcG~-G~~~~~l~~~-~~-~~v~~~D~s   74 (215)
T 2pxx_A            8 EYWDQRYQGAAD----SAPYDWFGDFSSFRA----LLEPE--LRPEDRILVLGCGN-SALSYELFLG-GF-PNVTSVDYS   74 (215)
T ss_dssp             HHHHHHTTTTTT----SCCCCTTCCHHHHHH----HHGGG--CCTTCCEEEETCTT-CSHHHHHHHT-TC-CCEEEEESC
T ss_pred             hHHHHHhccCCC----CCCcccccCHHHHHH----HHHHh--cCCCCeEEEECCCC-cHHHHHHHHc-CC-CcEEEEeCC
Confidence            455554433331    134556665554322    12222  26789999999997 6666777773 22 389999999


Q ss_pred             hhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC---------------hhhHHHHHHHHHhhcc
Q 041205          167 ETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN---------------EEEKAKILGHIRKYMK  231 (535)
Q Consensus       167 peAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm---------------~edK~~VL~eL~rvLK  231 (535)
                      +.+++.|++.+...    .+++|+++|+.+++...+.||+|+.....+.               ..+...+++++.++|+
T Consensus        75 ~~~~~~a~~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  150 (215)
T 2pxx_A           75 SVVVAAMQACYAHV----PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV  150 (215)
T ss_dssp             HHHHHHHHHHTTTC----TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHhcccC----CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCc
Confidence            99999999987642    4799999999887655567999997543311               2467899999999999


Q ss_pred             cCeEEEEEcc
Q 041205          232 EGGVLLVRSA  241 (535)
Q Consensus       232 PGGvLVvRsa  241 (535)
                      |||++++...
T Consensus       151 pgG~li~~~~  160 (215)
T 2pxx_A          151 PGGRFISMTS  160 (215)
T ss_dssp             EEEEEEEEES
T ss_pred             CCCEEEEEeC
Confidence            9999999775

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.42  E-value=1.2e-12  Score=127.98  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCC--ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---------
Q 041205          130 AQLKKVAFVGSGP--MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---------  198 (535)
Q Consensus       130 ~~pkRVLeIGSGp--lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---------  198 (535)
                      ....+|||||||+  .|..+..+++ ..|+++|++||+|+.+++.||+.+...    .+++|+++|+.+..         
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~-~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQS-VNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHH-HCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTTCHHHHHHSHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHH-hCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCCCchhhhccchhh
Confidence            3458999999995  0444444444 468999999999999999999988432    57999999997531         


Q ss_pred             --cCCCCcceEEeccccCChh--hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 --EKLGEYDCIILAALAGNEE--EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 --~dL~~FDvVfiaALVgm~e--dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        .+...||+|++...++..+  +...+|+++++.|+|||+|++...
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence              2335799999876665423  489999999999999999998764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.42  E-value=7.2e-13  Score=120.14  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .+.+|||||||+ |..+..+++   .|.+|+|+|+++++++.|++.    .   .+++|+++|+.+++...+.||+|++.
T Consensus        41 ~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~fD~v~~~  109 (203)
T 3h2b_A           41 VDGVILDVGSGT-GRWTGHLAS---LGHQIEGLEPATRLVELARQT----H---PSVTFHHGTITDLSDSPKRWAGLLAW  109 (203)
T ss_dssp             CCSCEEEETCTT-CHHHHHHHH---TTCCEEEECCCHHHHHHHHHH----C---TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred             CCCeEEEecCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHh----C---CCCeEEeCcccccccCCCCeEEEEeh
Confidence            388999999996 566677777   378999999999999999987    2   36899999999887766789999987


Q ss_pred             cccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.  .++...+++++.++|+|||.+++...
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            65544  35899999999999999999998764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=1.1e-12  Score=133.67  Aligned_cols=108  Identities=16%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++++|||||||+ |..++.+|++  ...+|+|||++ ++++.|+++++..| +.++|+|+++|+.++..+ +.||+
T Consensus        59 ~~~~~~~~VLDlGcGt-G~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~  132 (376)
T 3r0q_C           59 KHHFEGKTVLDVGTGS-GILAIWSAQA--GARKVYAVEAT-KMADHARALVKANN-LDHIVEVIEGSVEDISLP-EKVDV  132 (376)
T ss_dssp             TTTTTTCEEEEESCTT-THHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTT-CTTTEEEEESCGGGCCCS-SCEEE
T ss_pred             cccCCCCEEEEeccCc-CHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcC-CCCeEEEEECchhhcCcC-CcceE
Confidence            3457889999999996 6777888882  23499999999 99999999999999 788899999999887655 67999


Q ss_pred             EEeccccCC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGN---EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm---~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+...+.+.   ......++..+.+.|+|||+|+...
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            998643322   2568889999999999999998754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.42  E-value=1.2e-12  Score=127.10  Aligned_cols=141  Identities=14%  Similarity=0.140  Sum_probs=104.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|+|||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|+|+++|+.+.......||+|++
T Consensus        14 ~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l~~l~~~~~~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDH-AYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGLAAFEETDQVSVITI   90 (225)
T ss_dssp             CTTEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEeCCCc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchhhhcccCcCCCEEEE
Confidence            5789999999996 777788888 4667899999999999999999999999 788999999999754332225999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEccccc---ccccCCCCccccCCcEEEEEEc-CCCcceeeeEEEecC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA---RAFLYPVVEHELFDFKVLSIFH-PTNDVINSVVLLQLP  281 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl---R~fLYP~Vdpdl~GFeil~v~h-P~~eVINSVVvARK~  281 (535)
                      +.. | ..--.++++...++|+|||.|++-.-.+.   |..+      .-.||.+....- -.+.-+..+++++++
T Consensus        91 aG~-G-g~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L------~~~Gf~i~~e~lv~e~~~~Yeii~~~~~  158 (225)
T 3kr9_A           91 AGM-G-GRLIARILEEGLGKLANVERLILQPNNREDDLRIWL------QDHGFQIVAESILEEAGKFYEILVVEAG  158 (225)
T ss_dssp             EEE-C-HHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH------HHTTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred             cCC-C-hHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH------HHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence            643 2 13358899999999999999998543321   1111      226998875332 223344567777764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.42  E-value=1.6e-12  Score=119.73  Aligned_cols=99  Identities=13%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..++++   +.+|+|+|+|+++++.|++..       .+++|+++|+.+++. .+.||+|++
T Consensus        39 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGT-GTHLEHFTKE---FGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHHHH---HSEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred             CCCCeEEEecccC-CHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEE
Confidence            5789999999996 5556677773   349999999999999999863       258999999987655 457999994


Q ss_pred             -ccccC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 -AALAG-N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 -aALVg-m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ...++ +  .++...+++++.++|+|||.+++..
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence             32332 3  3677899999999999999999964

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.42  E-value=6.7e-13  Score=133.88  Aligned_cols=107  Identities=19%  Similarity=0.253  Sum_probs=88.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++++|||||||+ |..++.+|++  +..+|+|||++ ++++.|+++++..| +.++|+|+++|+.+++.+.+.||+|+
T Consensus        64 ~~~~~~VLDvGcG~-G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           64 LFKDKVVLDVGSGT-GILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHTTCEEEEESCTT-SHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             cCCCCEEEEEeccc-hHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcC-CCCcEEEEECcHHHccCCCCceEEEE
Confidence            46789999999996 6667888883  45699999999 59999999999999 78889999999998866667899999


Q ss_pred             ecccc---CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALA---GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALV---gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .....   ........++..+.++|+|||+++...
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            75321   114678899999999999999997543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.42  E-value=9.9e-13  Score=128.30  Aligned_cols=106  Identities=11%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL~~  203 (535)
                      +.+.++++|||+|||+ |+++..+|+...++++|+|+|+++++++.+++.+++.+    ++.++.+|+.+..   .....
T Consensus        73 l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           73 LPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEeccCccccccccce
Confidence            3579999999999995 88889999966789999999999999999999887755    7899999986532   23356


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+||.+...+  .++..++.++.+.|||||.+++-
T Consensus       148 vDvVf~d~~~~--~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQP--EQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCT--THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCC--hhHHHHHHHHHHhccCCCEEEEE
Confidence            99999764333  68889999999999999998874

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=2.3e-13  Score=130.39  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=86.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +...++.+|||||||+ |..+..+++   ++++|+|+|+|+.+++.|++..       .+++|+++|+.+++. .+.||+
T Consensus        53 l~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~  120 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGT-GQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLDA  120 (279)
T ss_dssp             HCCCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEEE
T ss_pred             hCCCCCCEEEEecCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcCE
Confidence            3457889999999996 666677777   7899999999999999998864       357899999988765 367999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++....+..++...++.++.++|+|||.+++...
T Consensus       121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          121 VFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            99876665457889999999999999999998653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.41  E-value=1.1e-12  Score=119.61  Aligned_cols=126  Identities=17%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++  .+..+|+|+|+|+.+++.|++.+...| +.+ ++|+++|+.+..  .+.||+|+.
T Consensus        59 ~~~~~vLDiG~G~-G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~~~--~~~fD~i~~  131 (205)
T 3grz_A           59 VKPLTVADVGTGS-GILAIAAHK--LGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLADV--DGKFDLIVA  131 (205)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTTTC--CSCEEEEEE
T ss_pred             cCCCEEEEECCCC-CHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccccC--CCCceEEEE
Confidence            5789999999997 666677877  355699999999999999999999988 544 999999997643  367999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEEEEEcCC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVLSIFHPT  268 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil~v~hP~  268 (535)
                      ....   .....+++++.+.|+|||++++.....-   ....+..  ...||++.......
T Consensus       132 ~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~~~~~~Gf~~~~~~~~~  186 (205)
T 3grz_A          132 NILA---EILLDLIPQLDSHLNEDGQVIFSGIDYL---QLPKIEQALAENSFQIDLKMRAG  186 (205)
T ss_dssp             ESCH---HHHHHHGGGSGGGEEEEEEEEEEEEEGG---GHHHHHHHHHHTTEEEEEEEEET
T ss_pred             CCcH---HHHHHHHHHHHHhcCCCCEEEEEecCcc---cHHHHHHHHHHcCCceEEeeccC
Confidence            7555   5678999999999999999998532110   0000000  23799987655543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.41  E-value=5.3e-13  Score=118.64  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=85.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~F  204 (535)
                      ..++.+|||+|||+ |..++.+++  .+..+|+|+|+|+++++.|++++...| +.++++|+++|+.+...    ..+.|
T Consensus        42 ~~~~~~vLD~GcG~-G~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~f  117 (187)
T 2fhp_A           42 YFDGGMALDLYSGS-GGLAIEAVS--RGMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQFYEEKLQF  117 (187)
T ss_dssp             CCSSCEEEETTCTT-CHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCCEEEeCCcc-CHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhC-CCcceEEEECcHHHHHHHHHhcCCCC
Confidence            35789999999996 555566666  255799999999999999999999988 66789999999987443    14679


Q ss_pred             ceEEeccccCChhhHHHHHHHH--HhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNEEEKAKILGHI--RKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL--~rvLKPGGvLVvRsa  241 (535)
                      |+|+++...+ ......++..+  .++|+|||++++...
T Consensus       118 D~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          118 DLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             EEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            9999874422 23566777777  889999999998654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.41  E-value=2.2e-12  Score=128.50  Aligned_cols=109  Identities=19%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+.++.+|||||||+ |..++.+++ ..++.+++++|+ +.+++.|++.+...| +.++|+|+++|+.+ ..+ ..||+
T Consensus       178 ~~~~~~~~vlDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D~  251 (374)
T 1qzz_A          178 YDWSAVRHVLDVGGGN-GGMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-PLP-VTADV  251 (374)
T ss_dssp             SCCTTCCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCS-CCEEE
T ss_pred             CCCCCCCEEEEECCCc-CHHHHHHHH-HCCCCEEEEEeC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCC-cCC-CCCCE
Confidence            3456789999999996 666677777 367899999999 999999999999988 77799999999875 222 24999


Q ss_pred             EEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++....+.  .++..++++++++.|+|||+|++-+.
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            998766643  34446999999999999998887543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.40  E-value=8e-13  Score=122.32  Aligned_cols=104  Identities=21%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc----CCCeEEEEccccccccCCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI----EKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L----s~rI~Fi~GDA~el~~dL~~F  204 (535)
                      +.++.+|||||||+ |..+..+++...+.++|+++|+++.+++.|++.+...| +    .++++|+++|+.+.....+.|
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECCcccCcccCCCc
Confidence            57889999999997 56666777743355799999999999999999998866 3    368999999997654444679


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++.....      .+++++.+.|+|||++++-.
T Consensus       153 D~i~~~~~~~------~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          153 DAIHVGAAAP------VVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEECSBBS------SCCHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCchH------HHHHHHHHhcCCCcEEEEEE
Confidence            9999876652      34568899999999998854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.40  E-value=2.9e-13  Score=121.93  Aligned_cols=142  Identities=11%  Similarity=0.039  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----L~~FD  205 (535)
                      .++.+|||||||+ |..++.+++ ..++++|+|+|+|+.+++.|++++...| +  +++|+++|+.+...+    .+.||
T Consensus        29 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGS-GCIAVSIAL-ACPGVSVTAVDLSMDALAVARRNAERFG-A--VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSB-CHHHHHHHH-HCTTEEEEEEECC----------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHhC-C--ceEEEEcchHhhhhhhhhccCccc
Confidence            6789999999996 667777877 4678999999999999999999999888 4  899999999873322    26799


Q ss_pred             eEEeccccC-------C-------------------hhhHHHHHHHHHhhcccCeE-EEEEcccccccccCCCCc-c-c-
Q 041205          206 CIILAALAG-------N-------------------EEEKAKILGHIRKYMKEGGV-LLVRSAKGARAFLYPVVE-H-E-  255 (535)
Q Consensus       206 vVfiaALVg-------m-------------------~edK~~VL~eL~rvLKPGGv-LVvRsa~GlR~fLYP~Vd-p-d-  255 (535)
                      +|++.....       +                   ...+..+++++.++|+|||+ +++.....-    ...+. . . 
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~~~~~~l~~  179 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQ----ADEVARLFAP  179 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSC----HHHHHHHTGG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCcc----HHHHHHHHHH
Confidence            999842110       0                   01127899999999999999 665433110    00010 0 2 


Q ss_pred             -cCCcEEEEEEcCCCcceeeeEEEecC
Q 041205          256 -LFDFKVLSIFHPTNDVINSVVLLQLP  281 (535)
Q Consensus       256 -l~GFeil~v~hP~~eVINSVVvARK~  281 (535)
                       ..||....+....... ..+++++|.
T Consensus       180 ~~~gf~~~~~~~~~~~~-~r~~~~~~~  205 (215)
T 4dzr_A          180 WRERGFRVRKVKDLRGI-DRVIAVTRE  205 (215)
T ss_dssp             GGGGTEECCEEECTTSC-EEEEEEEEC
T ss_pred             hhcCCceEEEEEecCCC-EEEEEEEEc
Confidence             3578665544433323 457777764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.40  E-value=1.4e-12  Score=120.59  Aligned_cols=102  Identities=19%  Similarity=0.318  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++.    .+|+|+|+|+++++.|++.+...|   .+++|+++|+.+.+.+ +.||+|++
T Consensus        32 ~~~~~vLdiG~G~-G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGT-GTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVDAITI  102 (243)
T ss_dssp             CTTCEEEEESCTT-CHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcCEEEE
Confidence            4679999999997 5666777772    799999999999999999998877   4799999999876654 67999997


Q ss_pred             cc-cc-CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AA-LA-GN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aA-LV-gm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .. .. ++  .++...+++++.++|+|||++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            53 22 22  3678899999999999999999854

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.40  E-value=8.8e-13  Score=134.01  Aligned_cols=142  Identities=15%  Similarity=0.234  Sum_probs=100.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfia  210 (535)
                      .+||+||||. |..+..+++ ++|+.+|++||+|+++++.||+.+...+  ..+++++++|+.+.....  +.||+|+++
T Consensus        91 ~rVLdIG~G~-G~la~~la~-~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFAD-VYPQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHH-HSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEEEECCc-CHHHHHHHH-HCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            4999999995 777788877 4688999999999999999999986543  368999999998875443  569999998


Q ss_pred             cccCC-hhh---HHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc---cc-CCcEEEEEEc-C----CCcceeeeEE
Q 041205          211 ALAGN-EEE---KAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH---EL-FDFKVLSIFH-P----TNDVINSVVL  277 (535)
Q Consensus       211 ALVgm-~ed---K~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp---dl-~GFeil~v~h-P----~~eVINSVVv  277 (535)
                      ...+. .+.   ..++++.++++|+|||+|++....+..   ++.+..   .+ .-|..+..++ |    ...--|.|++
T Consensus       167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~---~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~  243 (317)
T 3gjy_A          167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSD---LRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILM  243 (317)
T ss_dssp             CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTT---CHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEE
T ss_pred             CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcc---hHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEE
Confidence            65432 111   378999999999999999987653211   110100   11 2254333332 2    2245688999


Q ss_pred             EecC
Q 041205          278 LQLP  281 (535)
Q Consensus       278 ARK~  281 (535)
                      +.+.
T Consensus       244 As~~  247 (317)
T 3gjy_A          244 GSDT  247 (317)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            9874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.40  E-value=7.3e-13  Score=131.70  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-----CeEEEEccc------cccc-
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-----RMKFLTCDI------MEVK-  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-----rI~Fi~GDA------~el~-  198 (535)
                      ++.+|||||||+++.+..+++.   .+++|+|||+|++|++.|++.....+ ...     +++|+++|+      .++. 
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~~~d~~~~~l~~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETIRSDTFVSSVRE  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred             CCCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhcccchhhhhhhc
Confidence            5789999999986556555533   46899999999999999999887766 321     277888887      3332 


Q ss_pred             -cCCCCcceEEeccccCC---hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          199 -EKLGEYDCIILAALAGN---EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       199 -~dL~~FDvVfiaALVgm---~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                       .+.+.||+|++....+.   .++...++++++++|||||++++...+
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             23357999986544432   356789999999999999999997754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.40  E-value=3.4e-12  Score=112.16  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=87.8

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+...++.+|||||||+ |..++.+++   ++.+|+|+|+|+.+++.|++.++..| + .+++|+++|+.+ +.+.+
T Consensus        27 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~-~~~~~   99 (183)
T 2yxd_A           27 SIGKLNLNKDDVVVDVGCGS-GGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KNCQIIKGRAED-VLDKL   99 (183)
T ss_dssp             HHHHHCCCTTCEEEEESCCC-SHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-C-CSEEEEESCHHH-HGGGC
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CcEEEEECCccc-cccCC
Confidence            33344557889999999996 666677777   78999999999999999999999998 5 689999999987 33336


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+|++...    .+...++..+.+.  |||.+++...
T Consensus       100 ~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          100 EFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             CCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             CCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence            7999998755    4678999999997  9999998763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=9.7e-13  Score=127.00  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=91.4

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCcCCCeEEEEccccccc
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~Ls~rI~Fi~GDA~el~  198 (535)
                      ++..++...++.+|||||||+ |..++.+|++ .++.+|+|||+|+++++.|++++..   .| +.++++|+++|+.+..
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~-G~~~l~la~~-~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGA-GAAGMAVAAR-LEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSS-SHHHHHHHHH-CTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCH
T ss_pred             HHHHHhcccCCCEEEEeCChH-hHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHh
Confidence            444555667889999999996 6667788873 6789999999999999999999998   88 7778999999998762


Q ss_pred             -------cCCCCcceEEeccccC-----------------C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 -------EKLGEYDCIILAALAG-----------------N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 -------~dL~~FDvVfiaALVg-----------------m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                             ...+.||+|++.--..                 . ......+++.+.+.|+|||.|++-.
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence                   2235799999861110                 1 1346789999999999999998743

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=3e-13  Score=130.18  Aligned_cols=105  Identities=10%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||. |.+|+.++. ..|+++|+++|+|+.|+++|+++++..| +..+++|  +|..+. ...+.||+|+.
T Consensus        48 ~~~~~VLDlGCG~-GplAl~l~~-~~p~a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~--~d~~~~-~~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGF-NPLALYQWN-ENEKIIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF--LNKESD-VYKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTT-HHHHHHHHC-SSCCCEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE--ECCHHH-HTTSEEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE--eccccc-CCCCCcChhhH
Confidence            5689999999995 566666656 4789999999999999999999999999 6667777  665543 33356999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+..+....+..+++.|+|||++|...
T Consensus       122 ~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          122 LKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            8777765777788889999999999999876

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.39  E-value=9.8e-13  Score=121.81  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcC----CCcEEEEEeCChhHHHHHHHHHhhcCCc----CCCeEEEEccccccc-
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHM----KSTHFDNIDIDETANNLARRIVSSDDEI----EKRMKFLTCDIMEVK-  198 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l----~Ga~VtGIDIDpeAIelAR~li~~lG~L----s~rI~Fi~GDA~el~-  198 (535)
                      .+.++.+|||||||+ |+.++.+++...    ++++|+++|+++++++.|++.++..| +    ..+++|+++|+.+.. 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC-ccccccCCEEEEECChHhccc
Confidence            357889999999997 777778888433    56799999999999999999999877 3    468999999998754 


Q ss_pred             ---cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 ---EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ---~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                         ...+.||+|++.+..+      .+++.+.+.|+|||++++-..
T Consensus       155 ~~~~~~~~fD~I~~~~~~~------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASAS------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBS------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchH------HHHHHHHHhcCCCcEEEEEEc
Confidence               4446799999887663      246888999999999988654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=2.1e-12  Score=120.89  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=92.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~~  199 (535)
                      ..+...+.+.++++|||+|||+ |..++.+++...++++|+++|+++++++.|++.++.. |  ..+++|+++|+.+.+.
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~~~~  162 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEEAEL  162 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGGCCC
T ss_pred             HHHHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhhcCC
Confidence            3444445668899999999996 6666778774456899999999999999999999887 7  2689999999987644


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.+.||+|+++  .   ++...+++++.+.|+|||.+++-.+
T Consensus       163 ~~~~~D~v~~~--~---~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          163 EEAAYDGVALD--L---MEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             CTTCEEEEEEE--S---SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCcCEEEEC--C---cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            44679999985  2   3566899999999999999998664

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.38  E-value=7.9e-14  Score=130.26  Aligned_cols=105  Identities=21%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+|+   .+.+|+|+|+|+.+++.|+++++..| +..+++|+++|+.+++ ....||+|++
T Consensus        77 ~~~~~vLD~gcG~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           77 FKCDVVVDAFCGV-GGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             SCCSEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             cCCCEEEECcccc-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHHhc-ccCCCCEEEE
Confidence            4789999999996 666678888   36999999999999999999999999 6678999999998876 3467999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...+........+.+++++|+|||++++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            8665543444457778999999999988765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.38  E-value=6e-12  Score=122.27  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=94.9

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--C-CCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--K-LGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--d-L~~F  204 (535)
                      .+.++++||||||||+ ..+..+|+...++++|+++|+++.+++...+.+++.    .+|.++++|+.....  . .+.|
T Consensus        73 ~l~~g~~VLDlG~GtG-~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           73 PIRKGTKVLYLGAASG-TTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             SCCTTCEEEEETCTTS-HHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEEeecCC-HHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccce
Confidence            4689999999999985 455667774557889999999999976555554442    479999999975432  1 2469


Q ss_pred             ceEEeccccCChhhHHHHHH-HHHhhcccCeEEEEEcccc-cccccCCC--Ccc-----ccCCcEEEEEEc--CCCccee
Q 041205          205 DCIILAALAGNEEEKAKILG-HIRKYMKEGGVLLVRSAKG-ARAFLYPV--VEH-----ELFDFKVLSIFH--PTNDVIN  273 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~-eL~rvLKPGGvLVvRsa~G-lR~fLYP~--Vdp-----dl~GFeil~v~h--P~~eVIN  273 (535)
                      |+||.+...   ++..+++. .+.+.|||||.|++--..+ ...-..|.  ...     .-.||++.....  |...- .
T Consensus       148 D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~-h  223 (232)
T 3id6_C          148 DVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKD-H  223 (232)
T ss_dssp             EEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSS-C
T ss_pred             EEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCc-e
Confidence            999988554   45555554 5555999999998753211 11112221  111     125899987555  66432 4


Q ss_pred             eeEEEec
Q 041205          274 SVVLLQL  280 (535)
Q Consensus       274 SVVvARK  280 (535)
                      .+|++|+
T Consensus       224 ~~v~~~~  230 (232)
T 3id6_C          224 AIVLSKY  230 (232)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5777776

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.38  E-value=1.8e-12  Score=123.61  Aligned_cols=116  Identities=17%  Similarity=0.212  Sum_probs=93.2

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~  198 (535)
                      ...+...+.+.++.+|||||||+ |..++.+++...++.+|+++|+++++++.|+++++.. |.+..+++|+++|+.+.+
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34444455668899999999996 6666677774456899999999999999999999887 423478999999998775


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.+.||+|+++.     ++...+++++.+.|+|||++++-.+
T Consensus       167 ~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          167 LPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            5556799999842     2456899999999999999999764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.38  E-value=2.1e-12  Score=130.06  Aligned_cols=106  Identities=11%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--ccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~dL~~FDvV  207 (535)
                      ..+.+|||||||+ |..++.+++ .+|+.+|+++|+ +++++.|++.+...| +.++|+|+.+|..+.  +.+ +.||+|
T Consensus       178 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNT-GKWATQCVQ-YNKEVEVTIVDL-PQQLEMMRKQTAGLS-GSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTT-CHHHHHHHH-HSTTCEEEEEEC-HHHHHHHHHHHTTCT-TGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeC-HHHHHHHHHHHHhcC-cccceEEEEccccccCCCCC-CCcCEE
Confidence            4679999999996 667777777 478999999999 999999999999988 778999999999764  223 579999


Q ss_pred             EeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++....+.  .++..++|+++++.|+|||+|++.+
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            98776653  4566799999999999999998865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.38  E-value=1.7e-12  Score=120.19  Aligned_cols=105  Identities=8%  Similarity=0.061  Sum_probs=83.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVfi  209 (535)
                      ++.+|||+|||+ |..++.++.+  ...+|+|||+|+++++.|+++++..| + .+++|+++|+.+... ..+.||+||+
T Consensus        54 ~~~~vLDlgcG~-G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGS-GALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTT-CHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            578999999996 5556665552  23599999999999999999999998 5 789999999987433 3356999998


Q ss_pred             ccccCChhhHHHHHHHHHh--hcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRK--YMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~r--vLKPGGvLVvRsa  241 (535)
                      +...+ ......+++.+.+  +|+|||+|++...
T Consensus       129 ~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFR-RGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            75532 2567788888876  5999999988653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=3.2e-12  Score=117.12  Aligned_cols=110  Identities=19%  Similarity=0.136  Sum_probs=86.4

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+.+.++.+|||||||+ |..++.+++...++.+|+++|+|+++++.|++.+...| + .+++|+++|+.+.....+
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-Y-DNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEESCGGGCCGGGC
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCCCC
Confidence            33344567899999999996 67777787743355899999999999999999999888 4 469999999865333345


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+|++....+...      +++.+.|+|||++++-..
T Consensus       146 ~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred             CeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence            799999886664322      488999999999988654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.38  E-value=7.3e-13  Score=123.95  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=80.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--ccCCCCcce
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KEKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~dL~~FDv  206 (535)
                      +.++.+|||||||+ |..+..+++   .|++|+|||+|+++++.|++.          ++|+++|+.+.  +...+.||+
T Consensus        39 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~  104 (240)
T 3dli_A           39 FKGCRRVLDIGCGR-GEFLELCKE---EGIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDG  104 (240)
T ss_dssp             TTTCSCEEEETCTT-THHHHHHHH---HTCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSE
T ss_pred             hcCCCeEEEEeCCC-CHHHHHHHh---CCCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeE
Confidence            46789999999997 555677877   378999999999999998865          68899999875  334467999


Q ss_pred             EEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+.....+.  .++...++.++.++|||||++++...
T Consensus       105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            998766543  44679999999999999999998764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.38  E-value=1.3e-12  Score=119.46  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=83.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+   +     ++++++|+.+++ ..+.||+|+
T Consensus        41 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           41 LPAGAKILELGCGA-GYQAEAMLA---AGFDVDATDGSPELAAEASRRL---G-----RPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             SCTTCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHH---T-----SCCEECCGGGCC-CCSCEEEEE
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHH---cCCeEEEECCCHHHHHHHHHhc---C-----CceEEeeeccCC-CCCcEEEEE
Confidence            46789999999996 666677877   3789999999999999999886   3     567889998776 556799999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +...++.  .++...++.++.++|+|||++++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            8765543  45888999999999999999998754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.38  E-value=4.8e-12  Score=125.72  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=87.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++.+|||||||+ |..++.+++ ..++.+++++|+ +++++.|++.+...| +.++|+|+++|+.+. .+ ..||+
T Consensus       179 ~~~~~~~~vLDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-~~-~~~D~  252 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGK-GGFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFEP-LP-RKADA  252 (360)
T ss_dssp             SCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTSC-CS-SCEEE
T ss_pred             CCCccCcEEEEeCCcC-cHHHHHHHH-hCCCCEEEEecC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCCC-CC-CCccE
Confidence            3456789999999996 566677777 367899999999 999999999999988 777999999998752 22 24999


Q ss_pred             EEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++...++.  .++..++++++++.|+|||+|++-+
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            998766643  3344799999999999999888754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.37  E-value=2.7e-12  Score=130.18  Aligned_cols=109  Identities=17%  Similarity=0.321  Sum_probs=88.1

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEccccccccC--CCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKEK--LGE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~d--L~~  203 (535)
                      ...+++||+||||. |..++.+++ +.++.+|++||+|+++++.|++.+...  | + ..+++|+++|+.+....  .+.
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~-~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEECCHHHHHHhccCCC
Confidence            36789999999995 778888888 466789999999999999999998763  4 4 36899999999876433  356


Q ss_pred             cceEEeccccCC-hhh---HHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGN-EEE---KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm-~ed---K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|+++..... ..+   ...+++.+.++|+|||+|++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999999765322 122   5899999999999999999974

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.37  E-value=1.1e-12  Score=127.15  Aligned_cols=108  Identities=12%  Similarity=0.186  Sum_probs=81.7

Q ss_pred             CCCCEEEEEccCCChhhHHHH---HhhcCCCcEE--EEEeCChhHHHHHHHHHhhc-CCcCCCe--EEEEccccccc---
Q 041205          130 AQLKKVAFVGSGPMPLTSIIL---ASQHMKSTHF--DNIDIDETANNLARRIVSSD-DEIEKRM--KFLTCDIMEVK---  198 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~L---Ak~~l~Ga~V--tGIDIDpeAIelAR~li~~l-G~Ls~rI--~Fi~GDA~el~---  198 (535)
                      .++.+|||||||++.+|..++   +.+ .++++|  +|+|.|++|++.|++.+... | + .++  .|..+++.+++   
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~-~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~  127 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQ-YPGVCINNEVVEPSAEQIAKYKELVAKTSN-L-ENVKFAWHKETSSEYQSRM  127 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHH-STTCEEEEEEECSCHHHHHHHHHHHHTCSS-C-TTEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhh-CCCceeeEEEEeCCHHHHHHHHHHHHhccC-C-CcceEEEEecchhhhhhhh
Confidence            567899999999865554222   221 367755  99999999999999998765 4 3 445  45577776544   


Q ss_pred             ---cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 ---EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ---~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         +..+.||+|++....++.++...+|++++++|||||.+++-.
T Consensus       128 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             HTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence               234679999988666666889999999999999999998753

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.37  E-value=7.7e-13  Score=121.79  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH----HHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA----RRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA----R~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..++.+|||||||+ |..++.+|+ ..|+++|+|||+|+++++.+    ++.....| + .+++|+++|+.+++...+. 
T Consensus        25 ~~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~l~~~~~~-   99 (218)
T 3mq2_A           25 SQYDDVVLDVGTGD-GKHPYKVAR-QNPSRLVVALDADKSRMEKISAKAAAKPAKGG-L-PNLLYLWATAERLPPLSGV-   99 (218)
T ss_dssp             TTSSEEEEEESCTT-CHHHHHHHH-HCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-C-TTEEEEECCSTTCCSCCCE-
T ss_pred             ccCCCEEEEecCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-C-CceEEEecchhhCCCCCCC-
Confidence            36789999999996 677777888 47899999999999988853    33344456 3 5899999999987765544 


Q ss_pred             ceEEeccccC-----ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAG-----NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVg-----m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |.|++....+     +.++...++.+++++|||||++++..
T Consensus       100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            7776322110     12345899999999999999999853

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.37  E-value=4.1e-12  Score=121.72  Aligned_cols=108  Identities=12%  Similarity=0.181  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh------cCCcCCCeEEEEccccc-cc--cC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS------DDEIEKRMKFLTCDIME-VK--EK  200 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~------lG~Ls~rI~Fi~GDA~e-l~--~d  200 (535)
                      .++.+|||||||. |..++.||+ ..|++.|+|||+++.+++.|++.++.      .+ + .+|+|+++|+.+ ++  .+
T Consensus        45 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~-~-~nv~~~~~d~~~~l~~~~~  120 (235)
T 3ckk_A           45 QAQVEFADIGCGY-GGLLVELSP-LFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG-F-QNIACLRSNAMKHLPNFFY  120 (235)
T ss_dssp             -CCEEEEEETCTT-CHHHHHHGG-GSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC-C-TTEEEEECCTTTCHHHHCC
T ss_pred             CCCCeEEEEccCC-cHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC-C-CeEEEEECcHHHhhhhhCC
Confidence            5678999999995 677788888 46889999999999999999988764      34 3 689999999987 44  34


Q ss_pred             CCCcceEEeccccCC-h--hhH-----HHHHHHHHhhcccCeEEEEEcc
Q 041205          201 LGEYDCIILAALAGN-E--EEK-----AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L~~FDvVfiaALVgm-~--edK-----~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.||.|++...-.+ .  ..|     ..+++++.++|+|||.|++.+.
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            567999987432211 0  011     4799999999999999998764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.36  E-value=2.9e-12  Score=128.05  Aligned_cols=105  Identities=21%  Similarity=0.314  Sum_probs=85.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|||||||+ |..++.+|++  +..+|+|+|++ .+++.|++.++..| +.++|+|+++|+.+++.+.+.||+|+
T Consensus        36 ~~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Iv  110 (328)
T 1g6q_1           36 LFKDKIVLDVGCGT-GILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             hcCCCEEEEecCcc-HHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcC-CCCCEEEEECchhhccCCCCcccEEE
Confidence            45789999999996 5666778772  34599999999 59999999999999 78899999999988766556799999


Q ss_pred             eccccC---ChhhHHHHHHHHHhhcccCeEEEE
Q 041205          209 LAALAG---NEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVg---m~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ......   .......++..+.+.|+|||+++.
T Consensus       111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            763211   134577899999999999999974

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=2.2e-12  Score=125.90  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      +...+...  +.++++|||+|||+ |.-++.+|+. .. .+|+|+|+|+.+++.|+++++..| +.++++|+++|+.+++
T Consensus       115 ~~~~l~~~--~~~~~~VLDlgcG~-G~~~~~la~~-~~-~~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~~~  188 (278)
T 2frn_A          115 ERVRMAKV--AKPDELVVDMFAGI-GHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             HHHHHHHH--CCTTCEEEETTCTT-TTTHHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCC
T ss_pred             HHHHHHHh--CCCCCEEEEecccC-CHHHHHHHHh-CC-CEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHHhc
Confidence            44444433  25789999999996 5556777773 22 279999999999999999999999 7778999999998876


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      . .+.||+|+++...    ....++..+.+.|+|||++++.+.
T Consensus       189 ~-~~~fD~Vi~~~p~----~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          189 G-ENIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             C-CSCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             c-cCCccEEEECCch----hHHHHHHHHHHHCCCCeEEEEEEe
Confidence            6 4579999996443    457899999999999999998764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.36  E-value=2.1e-12  Score=129.87  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEcccccccc-CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKE-KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~-dL~~FD  205 (535)
                      ..+++||+||||. |.+++.+++ +.++.+|++||+|+++++.|++.+...  | + ..+++++++|+.+... ..+.||
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCce
Confidence            5679999999995 778888887 567899999999999999999998765  4 4 4789999999987433 335699


Q ss_pred             eEEeccccCChhhH----HHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEK----AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK----~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++++.-+..+.+    .++++.+.++|+|||++++...
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            99998643221122    7899999999999999999763

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.36  E-value=8.7e-13  Score=115.33  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=81.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----CCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----LGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----L~~FDv  206 (535)
                      ++.+|||+|||+ |..++.+++   .+..|+|+|+|+++++.|++++...| +  +++|+++|+.+....    ...||+
T Consensus        41 ~~~~vLD~GcG~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGS-GAVGLEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-L--GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSS-CHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-C--CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHcC-C--ceEEEeccHHHHHHhhhccCCceEE
Confidence            688999999996 666778877   35569999999999999999999988 5  899999999874321    236999


Q ss_pred             EEeccccCChhhHHHHHHHHH--hhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIR--KYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~--rvLKPGGvLVvRsa  241 (535)
                      |+++...+  .....+++.+.  ++|+|||++++...
T Consensus       114 i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          114 AFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            99875443  34556677777  99999999988653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.36  E-value=1.6e-12  Score=125.51  Aligned_cols=112  Identities=20%  Similarity=0.142  Sum_probs=88.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~Ls~rI~Fi~GDA~el~~  199 (535)
                      ..+...+.+.++++|||+|||+ |..++.+++...++.+|+++|+++++++.|+++++.. | . ++++|+++|+.+ ..
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~-~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-I-GNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-C-TTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-C-CcEEEEECchhc-cC
Confidence            3444445668899999999996 5556677774357899999999999999999999988 7 3 689999999987 33


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.+.||+|+++  .   ++...+++++.+.|+|||++++-..
T Consensus       176 ~~~~fD~Vi~~--~---~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          176 SDQMYDAVIAD--I---PDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             CSCCEEEEEEC--C---SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cCCCccEEEEc--C---cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            33569999984  2   4567999999999999999998664

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.36  E-value=4.2e-12  Score=125.63  Aligned_cols=110  Identities=17%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+...+.+.++++|||||||+ |..++.+|+....+++|+|+|+|+++++.|++.++..| + .+++|+++|+.+.+...
T Consensus        66 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~-~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           66 LFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGG
T ss_pred             HHHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CCeEEEECChhhccccC
Confidence            333445567899999999997 66667888743335789999999999999999999999 5 45999999998755545


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||+|++....+...      +.+.+.|+|||++++..
T Consensus       143 ~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred             CCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEE
Confidence            6799999887664322      57888999999999864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.36  E-value=2.6e-12  Score=126.41  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=104.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|+|+++|+.+...+...||+|++
T Consensus        20 ~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDH-AYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCcc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchhhccCccccccEEEE
Confidence            5789999999996 677788888 3566799999999999999999999999 788999999999876654335999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccc---cccccCCCCccccCCcEEEEEE--cCCCcceeeeEEEecC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG---ARAFLYPVVEHELFDFKVLSIF--HPTNDVINSVVLLQLP  281 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G---lR~fLYP~Vdpdl~GFeil~v~--hP~~eVINSVVvARK~  281 (535)
                      +..-  ..--.+++....++|++++.||+..-.|   +|..++      -.||.+....  --.+ -...++.++++
T Consensus        97 agmG--g~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~------~~Gf~i~~E~lv~e~~-k~Yeii~~~~~  164 (244)
T 3gnl_A           97 AGMG--GTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE------QNNWLITSEAILREDN-KVYEIMVLAPS  164 (244)
T ss_dssp             EEEC--HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH------HHTEEEEEEEEEEETT-EEEEEEEEEEC
T ss_pred             eCCc--hHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH------HCCCEEEEEEEEEECC-EEEEEEEEEeC
Confidence            6333  2456788999999999999999865333   111121      2589885422  2333 33457777664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.36  E-value=4.2e-12  Score=126.53  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+...++.+|||+||||++.| +.+|+.+.++++|+++|+|+.+++.+++++++.| + .+++|+++|+.+++...+.||
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t-~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-V-LNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-C-CSEEEESSCGGGGGGGCCCEE
T ss_pred             HhCCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-C-CeEEEEECChhhcccccccCC
Confidence            446688999999999986666 4566633356899999999999999999999999 5 479999999988765445799


Q ss_pred             eEEeccc---cCC-h--h----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAAL---AGN-E--E----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaAL---Vgm-~--e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++++-   .|+ .  +                ...++|+++.+.|||||+|++-+
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            9998743   222 1  1                12689999999999999999854

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.35  E-value=2.2e-12  Score=126.51  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=84.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc--------CCCeEEEEcccccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI--------EKRMKFLTCDIMEVKE  199 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L--------s~rI~Fi~GDA~el~~  199 (535)
                      ..+++||+||||+ |..++.+++ + +..+|++||+|+++++.|++.+ ..  | +        ..+++++++|+.+...
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~-~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-C-CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhc
Confidence            5689999999995 777788888 4 7789999999999999999998 54  4 3        4689999999976543


Q ss_pred             CCCCcceEEeccccCC-h-hh--HHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGN-E-EE--KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm-~-ed--K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+.||+|+++...+. . ..  ..++++.+.++|+|||++++..
T Consensus       149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            3456999999865422 1 11  3789999999999999999975

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.35  E-value=1.3e-11  Score=117.01  Aligned_cols=118  Identities=15%  Similarity=0.186  Sum_probs=89.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++ ..++++|+|+|+++.+++.|++..       .++.|+.+|+.+++...+.||+|+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHH-TCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeEEEE
Confidence            5789999999997 666677777 357899999999999999998763       3579999999887766678999996


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEccc-----ccccccCCCCcc------ccCCcEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK-----GARAFLYPVVEH------ELFDFKVLS  263 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~-----GlR~fLYP~Vdp------dl~GFeil~  263 (535)
                      ....       ..+.++.++|+|||++++-.+.     .++..+|+....      ...||++..
T Consensus       155 ~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~  212 (269)
T 1p91_A          155 IYAP-------CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQ  212 (269)
T ss_dssp             ESCC-------CCHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEEE
T ss_pred             eCCh-------hhHHHHHHhcCCCcEEEEEEcCHHHHHHHHHHhhcccccccchhhHhcCCcEEE
Confidence            4322       3589999999999999887642     133456664432      236887754

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.35  E-value=1e-11  Score=125.41  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=109.1

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +.......++.+|||||||+ |..++.+++ .+|+.+++++|+ +.+++.|++.+...| +.++|+|+.+|..+ +.+. 
T Consensus       194 l~~~~~~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-l~~~v~~~~~d~~~-~~p~-  267 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGR-GSLMAAVLD-AFPGLRGTLLER-PPVAEEARELLTGRG-LADRCEILPGDFFE-TIPD-  267 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTT-CCCS-
T ss_pred             HHHhCCCccCcEEEEeCCCc-cHHHHHHHH-HCCCCeEEEEcC-HHHHHHHHHhhhhcC-cCCceEEeccCCCC-CCCC-
Confidence            33334557789999999996 666677777 478999999999 999999999999988 78899999999873 2222 


Q ss_pred             CcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc---cc-c-----ccc------cCCCCcc-------ccCC
Q 041205          203 EYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA---KG-A-----RAF------LYPVVEH-------ELFD  258 (535)
Q Consensus       203 ~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa---~G-l-----R~f------LYP~Vdp-------dl~G  258 (535)
                      .||+||+....+.  .++..++|+++++.|+|||+|++.+.   .. .     ..+      .....+.       .-.|
T Consensus       268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG  347 (369)
T 3gwz_A          268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG  347 (369)
T ss_dssp             SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred             CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence            7999998766654  34445899999999999999988652   10 0     000      0001111       1379


Q ss_pred             cEEEEEEcCCCcceeeeEEEec
Q 041205          259 FKVLSIFHPTNDVINSVVLLQL  280 (535)
Q Consensus       259 Feil~v~hP~~eVINSVVvARK  280 (535)
                      |++..+....... .++|.+++
T Consensus       348 f~~~~~~~~~~~~-~svie~~~  368 (369)
T 3gwz_A          348 LRVERSLPCGAGP-VRIVEIRR  368 (369)
T ss_dssp             EEEEEEEECSSSS-EEEEEEEE
T ss_pred             CeEEEEEECCCCC-cEEEEEEe
Confidence            9998776523323 47888876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=6.9e-12  Score=116.75  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=90.8

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+.....+.++++|||||||+ |..++.++++   +.+|+++|+++++++.|+++++..| +..+++++.+|+.+.....
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~  156 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGS-GALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKDAEVPE  156 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTTSCCCT
T ss_pred             HHHHhcCCCCCCEEEEeCCCc-cHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhhcccCC
Confidence            334445567899999999995 7777888883   7899999999999999999999988 7789999999998754233


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+||.+.     ++...+++++.+.|+|||++++-.+
T Consensus       157 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          157 GIFHAAFVDV-----REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TCBSEEEECS-----SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CcccEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            5799999842     3567889999999999999998665

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.35  E-value=4.1e-12  Score=122.31  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      +...+...+.+.++.+|||+|||+ |..++.+++...++++|+++|+++++++.|+++++..| +.++++|+++|+.+. 
T Consensus       100 ~~~~i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-  176 (277)
T 1o54_A          100 DSSFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEG-  176 (277)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGC-
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHc-
Confidence            334445555668899999999997 66667777744568999999999999999999999988 667899999999875 


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.||+||++.     ++...++.++.+.|+|||++++-.+
T Consensus       177 ~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          177 FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3335799999852     3567899999999999999998764

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.35  E-value=3.8e-12  Score=123.77  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----  200 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----  200 (535)
                      .+...++++|||+||||++.|. .+|. ..++ ++|+++|+|+.+++.+++++++.| + .+++++++|+.+++..    
T Consensus        78 ~l~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~  153 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAPGGKTT-HLAQ-LMKNKGTIVAVEISKTRTKALKSNINRMG-V-LNTIIINADMRKYKDYLLKN  153 (274)
T ss_dssp             HHCCCTTCEEEETTCTTCHHHH-HHHH-HTTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCHHHHHHHHHHT
T ss_pred             HhCCCCcCEEEEeCCCccHHHH-HHHH-HcCCCCEEEEECCCHHHHHHHHHHHHHhC-C-CcEEEEeCChHhcchhhhhc
Confidence            3455789999999999876664 5555 2455 899999999999999999999999 5 4899999999876542    


Q ss_pred             CCCcceEEecccc---CC---------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALA---GN---------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALV---gm---------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|++++--   |+               .....++++++.+.|||||+|++-+
T Consensus       154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            4579999988322   21               1345889999999999999999865

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.34  E-value=7.7e-12  Score=122.20  Aligned_cols=110  Identities=12%  Similarity=0.069  Sum_probs=84.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-----cCCCeEEEEccccccc----cC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-----IEKRMKFLTCDIMEVK----EK  200 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-----Ls~rI~Fi~GDA~el~----~d  200 (535)
                      .++.+|||||||++.++ ..+++  .++.+|+|+|+|+++++.|++.....+.     ...+++|+++|+.+.+    ..
T Consensus        33 ~~~~~VLDlGcG~G~~~-~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~  109 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDL-LKWKK--GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR  109 (313)
T ss_dssp             --CCEEEEETCTTTTTH-HHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS
T ss_pred             CCCCEEEEECCCCcHHH-HHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc
Confidence            47889999999975555 45555  2678999999999999999998876420     1247999999998764    22


Q ss_pred             --CCCcceEEeccccCCh----hhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          201 --LGEYDCIILAALAGNE----EEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~----edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                        .+.||+|++...+++.    ++...++.++.++|+|||++++....
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence              2479999987655432    55679999999999999999987653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.9e-12  Score=121.00  Aligned_cols=103  Identities=10%  Similarity=0.059  Sum_probs=83.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-----CC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-----GE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-----~~  203 (535)
                      +.++.+|||||||+ |..+..+|+.   +.+|+|||+|+.+++.|++..   .  ..+++|+++|+.+.....     ..
T Consensus        54 ~~~~~~vLD~GcG~-G~~~~~la~~---~~~v~gvD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~  124 (245)
T 3ggd_A           54 FNPELPLIDFACGN-GTQTKFLSQF---FPRVIGLDVSKSALEIAAKEN---T--AANISYRLLDGLVPEQAAQIHSEIG  124 (245)
T ss_dssp             SCTTSCEEEETCTT-SHHHHHHHHH---SSCEEEEESCHHHHHHHHHHS---C--CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHh---CCCEEEEECCHHHHHHHHHhC---c--ccCceEEECcccccccccccccccC
Confidence            46789999999996 6777788883   349999999999999999987   2  147999999998754321     23


Q ss_pred             cceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|+.....+.  .++...+++++.++|+|||++++.+
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            899998877765  4488999999999999999877755

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.34  E-value=1.6e-11  Score=129.40  Aligned_cols=116  Identities=14%  Similarity=0.134  Sum_probs=90.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHH-------HHHHhhcCCcC-CCeEEEEc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLA-------RRIVSSDDEIE-KRMKFLTC  192 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelA-------R~li~~lG~Ls-~rI~Fi~G  192 (535)
                      ..+...+.+.++++|||||||+ |..++.+|+. .+..+|+|||+++.+++.|       ++.++..| +. .+++|+++
T Consensus       232 ~~ml~~l~l~~g~~VLDLGCGs-G~la~~LA~~-~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~g  308 (433)
T 1u2z_A          232 SDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEES
T ss_pred             HHHHHhcCCCCCCEEEEeCCCc-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEc
Confidence            3334445667899999999995 7777888883 3446899999999999999       88888888 54 78999998


Q ss_pred             cccccc----cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          193 DIMEVK----EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       193 DA~el~----~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |.....    ...+.||+|++.... +.++...+|.++.+.|+|||+|++-+
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEee
Confidence            765321    123579999975333 23788889999999999999999965

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.34  E-value=5.8e-12  Score=118.12  Aligned_cols=104  Identities=11%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc----cccCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME----VKEKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e----l~~dL~  202 (535)
                      +.+.++++|||||||+ |..++.+|+. .+.++|+|||+++++++.|+++++..    .++.|+++|+.+    .+.. .
T Consensus        70 ~~~~~~~~VLDlGcG~-G~~~~~la~~-~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           70 MPIKRDSKILYLGASA-GTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCCCTTCEEEEESCCS-SHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-C
T ss_pred             cCCCCCCEEEEEcccC-CHHHHHHHHH-cCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-c
Confidence            3456889999999996 7777888883 44689999999999999999987653    489999999986    4443 5


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .||+|+.+  +........++.++.+.|+|||++++-
T Consensus       143 ~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          143 KVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            79999943  211133478899999999999999884

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.34  E-value=7.1e-12  Score=126.16  Aligned_cols=111  Identities=21%  Similarity=0.268  Sum_probs=88.0

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +.......++++|||||||+ |.-++.+|+  .+..+|+|||+++ +++.|++.++..| +.++|+++++|+.++..+ +
T Consensus        42 i~~~l~~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~-l~~~v~~~~~d~~~~~~~-~  115 (348)
T 2y1w_A           42 ILQNHTDFKDKIVLDVGCGS-GILSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-E  115 (348)
T ss_dssp             HHHTGGGTTTCEEEEETCTT-SHHHHHHHH--TTCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-S
T ss_pred             HHhccccCCcCEEEEcCCCc-cHHHHHHHh--CCCCEEEEECCHH-HHHHHHHHHHHcC-CCCcEEEEEcchhhCCCC-C
Confidence            33334456889999999997 555677777  2456999999996 8899999999989 788999999999876543 5


Q ss_pred             CcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .||+|+..... ++ .+.....+.++.+.|+|||++++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            69999986443 22 456778889999999999999854

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.34  E-value=7.3e-12  Score=124.00  Aligned_cols=109  Identities=20%  Similarity=0.340  Sum_probs=90.1

Q ss_pred             CCCC-CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcc
Q 041205          128 GVAQ-LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYD  205 (535)
Q Consensus       128 ~l~~-pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FD  205 (535)
                      ...+ +.+|||||||+ |..+..+++ .+|+.+++++|+ +++++.|++.+...| +.++|+|+.+|..+.+. ..++||
T Consensus       175 ~~~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~D  250 (352)
T 3mcz_A          175 GVFARARTVIDLAGGH-GTYLAQVLR-RHPQLTGQIWDL-PTTRDAARKTIHAHD-LGGRVEFFEKNLLDARNFEGGAAD  250 (352)
T ss_dssp             GGGTTCCEEEEETCTT-CHHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CGGGEEEEECCTTCGGGGTTCCEE
T ss_pred             CCcCCCCEEEEeCCCc-CHHHHHHHH-hCCCCeEEEEEC-HHHHHHHHHHHHhcC-CCCceEEEeCCcccCcccCCCCcc
Confidence            3455 89999999996 566667777 478899999999 899999999999988 77899999999987542 235699


Q ss_pred             eEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++....+.  .++...+++++++.|+|||+|++.+
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          251 VVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9998766653  4456999999999999999998865

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.34  E-value=7.3e-12  Score=125.50  Aligned_cols=119  Identities=18%  Similarity=0.138  Sum_probs=96.5

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+....+..++.+|||+|||+ |.-++.+|....++.+|+|+|+|+.+++.|+++++..| +. +|+|+++|+.+++..
T Consensus       193 ~~l~~~~~~~~~~~vLD~gcGs-G~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          193 QALLRLADARPGMRVLDPFTGS-GTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-WIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHTTCCTTCCEEESSCTT-SHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-TCEEEECCGGGGGGT
T ss_pred             HHHHHHhCCCCCCEEEeCCCCc-CHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEeCChhhCccc
Confidence            3444455667889999999997 55667777732367999999999999999999999999 66 999999999998777


Q ss_pred             CCCcceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          201 LGEYDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       201 L~~FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      ...||+|+++--.|.        ...+..+++.+.++|+|||.+++-+.+
T Consensus       270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            777999999654442        123588999999999999999987653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.34  E-value=7.5e-12  Score=124.18  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccC--CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEK--LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~d--L~~FD  205 (535)
                      .++++||+||||. |..+..+++ +.++.+|++||+|+++++.|++.+...  +....+++++++|+.+.+..  .+.||
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLR-HGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            5789999999995 677777777 456789999999999999999987431  11246899999999887653  45799


Q ss_pred             eEEeccccCChhhH----HHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEK----AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK----~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+++......+..    .++++++.++|+|||++++...
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99997654321122    6899999999999999999754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.33  E-value=8.3e-12  Score=115.85  Aligned_cols=103  Identities=15%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cC-CCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EK-LGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~d-L~~FD  205 (535)
                      +.++++|||+|||+ |..++.+|++..++++|+|+|+++++++.++++++..    .+++|+++|+.+..  .. .+.||
T Consensus        71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCCce
Confidence            56889999999996 7777888874445689999999999999999988764    47999999997632  11 24699


Q ss_pred             eEEeccccCChhhHH-HHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGNEEEKA-KILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm~edK~-~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++...   ++.. .++.++.+.|+|||.+++-
T Consensus       146 ~v~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          146 VIFEDVAQ---PTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCCS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCC---HhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99987543   3444 4599999999999998886

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.33  E-value=8.3e-12  Score=116.79  Aligned_cols=105  Identities=9%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~F  204 (535)
                      .+.++++|||||||+ |..++.+|++..++++|+|||+++.+++.+.+.++..    .+++|+++|+.+.   +...+.|
T Consensus        74 ~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           74 HIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred             cCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCcE
Confidence            457889999999996 6777788884346789999999999988888887764    4799999999863   3334579


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+|+++...  ......++.++.+.|+|||++++.
T Consensus       149 D~V~~~~~~--~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          149 DVIFADVAQ--PDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCCC--ccHHHHHHHHHHHHcCCCeEEEEE
Confidence            999986442  134456788999999999999984

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.33  E-value=5.6e-12  Score=125.78  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCc-CCCeEEEEcccccccc-CCCCc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEI-EKRMKFLTCDIMEVKE-KLGEY  204 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~L-s~rI~Fi~GDA~el~~-dL~~F  204 (535)
                      ...+++||+||||. |..++.+++ +.+..+|++||+|+++++.|++.+..  .| + ..+++++++|+.+... ..+.|
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHhhCCCCc
Confidence            35789999999995 777888887 45678999999999999999999876  34 3 4789999999987433 23569


Q ss_pred             ceEEeccccCCh----hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNE----EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~----edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+||+++..+..    ....++++++.++|+|||+|++..
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999998654321    124679999999999999999976

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.32  E-value=3.1e-12  Score=123.38  Aligned_cols=108  Identities=18%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----------------cC---------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE----------------IE---------  184 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----------------Ls---------  184 (535)
                      .++.+|||||||++. ++++++.  .++.+|+|||++++|++.|++.++..+.                ..         
T Consensus        70 ~~~~~vLDiGcG~G~-~~~l~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  146 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV-YQLLSAC--SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  146 (289)
T ss_dssp             SCCSEEEEETCTTCC-GGGTTGG--GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCeEEEECCCcCh-HHHHhhc--cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence            378999999999854 6665554  3578999999999999999986653210                00         


Q ss_pred             ---CCeEEEEccccc-cccC-----CCCcceEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          185 ---KRMKFLTCDIME-VKEK-----LGEYDCIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       185 ---~rI~Fi~GDA~e-l~~d-----L~~FDvVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ..++++++|+.+ .+..     .+.||+|+.....+.    .++...+|.+++++|||||+|++..
T Consensus       147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence               025788889876 4322     234999998755543    4689999999999999999999864

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.32  E-value=1.3e-11  Score=119.04  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=85.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|+++++..| + .+++|+++|+.+.. ..+.||+|+.
T Consensus       108 ~~~~~vLDlG~Gs-G~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~-~~v~~~~~d~~~~~-~~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGT-GAIALALAS-ERPDCEIIAVDRMPDAVSLAQRNAQHLA-I-KNIHILQSDWFSAL-AGQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHH-HCTTSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCSTTGGG-TTCCEEEEEE
T ss_pred             cCCCEEEEecCCc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEcchhhhc-ccCCccEEEE
Confidence            5678999999997 566677776 3688999999999999999999999998 5 47999999997643 2457999998


Q ss_pred             ccccCC-------------------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN-------------------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm-------------------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..-...                         ......++.++.++|+|||.+++-.
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            621100                         1467899999999999999999864

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.32  E-value=6.3e-12  Score=123.61  Aligned_cols=107  Identities=21%  Similarity=0.229  Sum_probs=88.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....+ .+|||||||+ |..++.+++ .+|+.+++++|+ +.+++.|++.+...| +.++|+|+.+|..+ +.+ +.||+
T Consensus       164 ~~~~~-~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D~  236 (334)
T 2ip2_A          164 LDFRG-RSFVDVGGGS-GELTKAILQ-AEPSARGVMLDR-EGSLGVARDNLSSLL-AGERVSLVGGDMLQ-EVP-SNGDI  236 (334)
T ss_dssp             SCCTT-CEEEEETCTT-CHHHHHHHH-HCTTCEEEEEEC-TTCTHHHHHHTHHHH-HTTSEEEEESCTTT-CCC-SSCSE
T ss_pred             CCCCC-CEEEEeCCCc-hHHHHHHHH-HCCCCEEEEeCc-HHHHHHHHHHHhhcC-CCCcEEEecCCCCC-CCC-CCCCE
Confidence            34455 8999999996 566667777 368899999999 999999999998888 67899999999876 333 56999


Q ss_pred             EEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++....+ + .++..++++++++.|+|||+|++.+
T Consensus       237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          237 YLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99876665 3 4455699999999999999998865

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.32  E-value=8.3e-12  Score=118.46  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--------CCcCCCeEEEEccccc-cc-
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--------DEIEKRMKFLTCDIME-VK-  198 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--------G~Ls~rI~Fi~GDA~e-l~-  198 (535)
                      +.++.+|||||||+ |..++.+|+ ..+++.|+|||+++.+++.|++.++..        | + .+++|+++|+.+ ++ 
T Consensus        47 ~~~~~~vLDiGcG~-G~~~~~la~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~nv~~~~~D~~~~l~~  122 (246)
T 2vdv_E           47 MTKKVTIADIGCGF-GGLMIDLSP-AFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-F-QNINVLRGNAMKFLPN  122 (246)
T ss_dssp             BSCCEEEEEETCTT-SHHHHHHHH-HSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-T-TTEEEEECCTTSCGGG
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHH-hCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-C-CcEEEEeccHHHHHHH
Confidence            35788999999996 555677777 357889999999999999999998876        6 4 589999999987 33 


Q ss_pred             -cCCCCcceEEeccccCChhh--------HHHHHHHHHhhcccCeEEEEEc
Q 041205          199 -EKLGEYDCIILAALAGNEEE--------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 -~dL~~FDvVfiaALVgm~ed--------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       .+.+.||.|++...-.+...        ...++..+.++|+|||+|++.+
T Consensus       123 ~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          123 FFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence             33456999885421111000        1589999999999999999864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.32  E-value=8.9e-12  Score=115.41  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=83.3

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+...+.+.++.+|||||||+ |..+..+++.   +.+|+|+|+|+++++.|++.+...|    +++|+++|+.+.....
T Consensus        61 ~~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~~  132 (231)
T 1vbf_A           61 FMLDELDLHKGQKVLEIGTGI-GYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEEE  132 (231)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGGG
T ss_pred             HHHHhcCCCCCCEEEEEcCCC-CHHHHHHHHH---cCEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccccccC
Confidence            333444567889999999997 6666777773   3899999999999999999987765    7999999998733334


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+|++....+...      +++.+.|+|||++++-..
T Consensus       133 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          133 KPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred             CCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEc
Confidence            6799999887664322      468899999999998654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.31  E-value=4.9e-12  Score=124.04  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEccccccccC-CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKEK-LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~d-L~~FD  205 (535)
                      ..+++||+||||. |..++.+++ +.+..+|++||+|+++++.|++.+...  + + ..+++++.+|+.+.... .+.||
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHh-CCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCee
Confidence            4689999999995 777778877 455689999999999999999988642  3 3 36899999999875433 35699


Q ss_pred             eEEeccccCC-hh---hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN-EE---EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm-~e---dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+++...+. .+   ...++++.+.++|+|||++++...
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            9999865432 11   136899999999999999999754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.31  E-value=1e-11  Score=119.41  Aligned_cols=141  Identities=19%  Similarity=0.214  Sum_probs=100.8

Q ss_pred             hHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          112 YVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       112 Yv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      +.+..+.-...+...  +.++++|||||||+ |..++.+++   .|.+|+|+|+|+.+++.|+++++..| +.  ++|++
T Consensus       103 ~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~-G~l~~~la~---~g~~v~gvDi~~~~v~~a~~n~~~~~-~~--v~~~~  173 (254)
T 2nxc_A          103 HHETTRLALKALARH--LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNG-VR--PRFLE  173 (254)
T ss_dssp             CSHHHHHHHHHHHHH--CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTT-CC--CEEEE
T ss_pred             CCHHHHHHHHHHHHh--cCCCCEEEEecCCC-cHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEE
Confidence            334444444555443  36789999999997 666778877   35599999999999999999999988 53  99999


Q ss_pred             ccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEEEEEcCC
Q 041205          192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVLSIFHPT  268 (535)
Q Consensus       192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil~v~hP~  268 (535)
                      +|+.+.. ..+.||+|+.....   .....++.++.++|+|||++++.....-   -.+.+..  .-.||++..+....
T Consensus       174 ~d~~~~~-~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils~~~~~---~~~~v~~~l~~~Gf~~~~~~~~~  245 (254)
T 2nxc_A          174 GSLEAAL-PFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLTGILKD---RAPLVREAMAGAGFRPLEEAAEG  245 (254)
T ss_dssp             SCHHHHG-GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEEEEEGG---GHHHHHHHHHHTTCEEEEEEEET
T ss_pred             CChhhcC-cCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEEeeccC---CHHHHHHHHHHCCCEEEEEeccC
Confidence            9987632 23579999986444   4678999999999999999998532110   0000100  23699987665543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.31  E-value=1e-11  Score=122.02  Aligned_cols=111  Identities=21%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c-CCCeEEEEccccccccC-CCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I-EKRMKFLTCDIMEVKEK-LGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L-s~rI~Fi~GDA~el~~d-L~~FD  205 (535)
                      ...+++||+||||. |..+..+++ +.++.+|++||+|+++++.|++.+...+. + ..+++++++|+.+.... .+.||
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence            35789999999995 667777777 56678999999999999999999876420 2 36899999999875432 35699


Q ss_pred             eEEeccccCC-hhhH---HHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN-EEEK---AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm-~edK---~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++++..+. ....   .++++.+.+.|+|||++++...
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            9999764432 1111   6999999999999999999754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.31  E-value=6.5e-12  Score=125.32  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEccccccc-cCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVK-EKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~-~dL~~FD  205 (535)
                      ..+++||+||||. |..+..+++ +.++.+|++||+|+++++.|++.+...  |.+ ..+++++++|+.+.. ...+.||
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            5689999999995 777788877 456789999999999999999988652  201 368999999998743 2345799


Q ss_pred             eEEeccccCC---hh--h--HHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGN---EE--E--KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm---~e--d--K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++...+.   .+  .  ..++++.+.++|+|||++++..
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999865431   01  1  4799999999999999999964

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.31  E-value=6.9e-12  Score=119.27  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCC-hhHHHHH---HHHHhhcCCcCCCeEEEEccccccccCC-CCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDID-ETANNLA---RRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDID-peAIelA---R~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~F  204 (535)
                      .++.+|||||||+ |..++.+|+ ..++++|+|||+| +.+++.|   ++.+.+.| + .+++|+++|+.+++... +.+
T Consensus        23 ~~~~~vLDiGCG~-G~~~~~la~-~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-~-~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           23 QFDRVHIDLGTGD-GRNIYKLAI-NDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-L-SNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TCSEEEEEETCTT-SHHHHHHHH-TCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-C-SSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCEEEEEeccC-cHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-C-CCeEEEEcCHHHhhhhccCeE
Confidence            6789999999996 677778886 3589999999999 6666665   88888888 4 58999999998875422 335


Q ss_pred             ceEEeccccC-----ChhhHHHHHHHHHhhcccCeEEEE
Q 041205          205 DCIILAALAG-----NEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       205 DvVfiaALVg-----m~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |.|++....+     ...+...+|.+++++|||||++++
T Consensus        99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            5555432110     011235789999999999999998

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.30  E-value=2.7e-11  Score=122.18  Aligned_cols=146  Identities=18%  Similarity=0.179  Sum_probs=105.4

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ...+..+|+|||||+ |..++.+++ .+|+.+++..|. |++++.|++.+...+  .+||+|+.||..+.  +..++|+|
T Consensus       176 ~~~~~~~v~DvGgG~-G~~~~~l~~-~~p~~~~~~~dl-p~v~~~a~~~~~~~~--~~rv~~~~gD~~~~--~~~~~D~~  248 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGA-GALAKECMS-LYPGCKITVFDI-PEVVWTAKQHFSFQE--EEQIDFQEGDFFKD--PLPEADLY  248 (353)
T ss_dssp             CGGGCSEEEEETCTT-SHHHHHHHH-HCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTTS--CCCCCSEE
T ss_pred             CcccCCeEEeeCCCC-CHHHHHHHH-hCCCceeEeccC-HHHHHHHHHhhhhcc--cCceeeecCccccC--CCCCceEE
Confidence            456778999999996 666677777 488999999998 899999999987655  58999999998653  34568999


Q ss_pred             EeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc----ccc---ccc--------cCCCC--cc-c------cCCcEE
Q 041205          208 ILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA----KGA---RAF--------LYPVV--EH-E------LFDFKV  261 (535)
Q Consensus       208 fiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa----~Gl---R~f--------LYP~V--dp-d------l~GFei  261 (535)
                      ++...+|.  .++..++|+++++.|+|||+|++.+.    .+-   ...        +..-.  .. +      -.||+.
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            98866654  45567999999999999998888662    110   000        00100  01 1      279998


Q ss_pred             EEEEcCCCcceeeeEEEecCC
Q 041205          262 LSIFHPTNDVINSVVLLQLPK  282 (535)
Q Consensus       262 l~v~hP~~eVINSVVvARK~~  282 (535)
                      ..+ +|.+.. .++|+|||+.
T Consensus       329 v~v-~~~~~~-~~~i~ArKgt  347 (353)
T 4a6d_A          329 FQF-KKTGAI-YDAILARKGT  347 (353)
T ss_dssp             EEE-ECCSSS-CEEEEEECCC
T ss_pred             EEE-EEcCCc-eEEEEEEecC
Confidence            655 455544 5799999973

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.30  E-value=1.1e-11  Score=127.14  Aligned_cols=114  Identities=13%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC--CeEEEEcccccccc
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK--RMKFLTCDIMEVKE  199 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~--rI~Fi~GDA~el~~  199 (535)
                      .+...+...++.+|||||||+ |..++.+|+ ..|+++|+|||+|+.+++.|+++++..| +.+  +++|+.+|+.+. .
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~-G~~s~~la~-~~p~~~V~gvD~s~~al~~Ar~n~~~ng-l~~~~~v~~~~~D~~~~-~  288 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSG-V  288 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTT-CHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGGGEEEEECSTTTT-C
T ss_pred             HHHHhCcccCCCeEEEEeCcc-hHHHHHHHH-HCCCCEEEEEECcHHHHHHHHHHHHHcC-CCcCceEEEEechhhcc-C
Confidence            344445546679999999996 666677877 4679999999999999999999999988 543  588999999763 3


Q ss_pred             CCCCcceEEeccccC----C-hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAG----N-EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVg----m-~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..+.||+|++....+    + .....+++.++.++|+|||++++-
T Consensus       289 ~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          289 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            345799999864433    1 233457999999999999998884

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.30  E-value=6.7e-12  Score=124.27  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCc-CCCeEEEEcccccccc-CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEI-EKRMKFLTCDIMEVKE-KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~L-s~rI~Fi~GDA~el~~-dL~~FD  205 (535)
                      ..+++||+||||+ |..++.+++ +.++.+|++||+|+++++.|++.+..  .+ + ..+++++++|+.+... ..+.||
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCce
Confidence            4679999999996 667777877 45678999999999999999999865  23 3 3689999999977543 235699


Q ss_pred             eEEeccccC-C----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAG-N----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVg-m----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+++..-+ .    .....++++.+.++|+|||++++...
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            999875422 1    00237899999999999999999754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=3.1e-12  Score=119.42  Aligned_cols=91  Identities=11%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccccC-CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKEK-LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~d-L~~FDvV  207 (535)
                      .++.+|||||||+ |..++.+++   .+++|+|+|+++.+++.|++.    .   .+++|+++|+. .++.. .+.||+|
T Consensus        47 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGH-GPDAARFGP---QAARWAAYDFSPELLKLARAN----A---PHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHH----C---TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHh----C---CCceEEEcchhhccCCcCCCCEEEE
Confidence            5789999999996 677788888   278999999999999999988    2   36899999994 45555 4679999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      +..      .+...++.++.++|+|||+++
T Consensus       116 ~~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             EeC------CCHHHHHHHHHHHcCCCcEEE
Confidence            986      256788999999999999998

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.28  E-value=1.4e-11  Score=126.83  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=87.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++   .+++|++||+|+.+++.|++++...| +  +++|+++|+.+...+.+.||+|++
T Consensus       232 ~~~~~VLDlGcG~-G~~~~~la~---~g~~V~gvDis~~al~~A~~n~~~~~-~--~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          232 VRGRQVLDLGAGY-GALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEANA-L--KAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTTCEEEEETCTT-STTHHHHHH---TTCEEEEEESBHHHHHHHHHHHHHTT-C--CCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCCEEEEEeeeC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-C--CeEEEEcchhhccccCCCeEEEEE
Confidence            4678999999996 666778888   37899999999999999999999988 4  489999999887665567999998


Q ss_pred             ccccCC-----hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN-----EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm-----~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+.     ......++.++.++|+|||++++-.
T Consensus       305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            644432     4678899999999999999998854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.28  E-value=1.8e-11  Score=123.03  Aligned_cols=109  Identities=21%  Similarity=0.235  Sum_probs=86.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEcccccccc-CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKE-KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~-dL~~FD  205 (535)
                      ..+++||+||||+ |..++.+++ +.++.+|+++|+|+++++.|++++...  + + ..+++|+++|+.+... ..+.||
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDis~~~l~~ar~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEEccHHHHHhhcCCCce
Confidence            5679999999996 677778877 457899999999999999999998762  3 3 3689999999977432 235699


Q ss_pred             eEEeccccCC--hhh--HHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN--EEE--KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm--~ed--K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+++..-..  ...  ..++++.+.+.|+|||++++...
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            9998763221  111  17999999999999999999754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.28  E-value=9e-12  Score=107.58  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--------cC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--------EK  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--------~d  200 (535)
                      +.++.+|||||||+ |..++.+++.+.++.+|+|+|+++ +++.            .+++|+++|+.+.+        ..
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCC
Confidence            47889999999997 566667777434678999999999 6421            47899999998764        44


Q ss_pred             CCCcceEEeccccCChhhH-----------HHHHHHHHhhcccCeEEEEEcc
Q 041205          201 LGEYDCIILAALAGNEEEK-----------AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK-----------~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+.||+|+.+...+.....           ..++.++.+.|+|||.+++...
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4679999987554321122           6899999999999999998654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=1.8e-11  Score=114.93  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=82.3

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ...+.+.++.+|||||||+ |+.++.+++. .+ .+|+++|+++++++.|++.+...| + .+++|+++|+.....+...
T Consensus        84 ~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~  158 (235)
T 1jg1_A           84 LEIANLKPGMNILEVGTGS-GWNAALISEI-VK-TDVYTIERIPELVEFAKRNLERAG-V-KNVHVILGDGSKGFPPKAP  158 (235)
T ss_dssp             HHHHTCCTTCCEEEECCTT-SHHHHHHHHH-HC-SCEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCC
T ss_pred             HHhcCCCCCCEEEEEeCCc-CHHHHHHHHH-hC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CCcEEEECCcccCCCCCCC
Confidence            3334567889999999995 7777788773 33 899999999999999999999988 5 4599999998332222235


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|++......      +.+.+.+.|+|||++++-..
T Consensus       159 fD~Ii~~~~~~~------~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          159 YDVIIVTAGAPK------IPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEEEEECSBBSS------CCHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCcHHH------HHHHHHHhcCCCcEEEEEEe
Confidence            999998766632      12368889999999988654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.27  E-value=1.4e-11  Score=117.11  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++...  +    +  |+++|+.+++...+.||+|++.
T Consensus        54 ~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~--~----~--~~~~d~~~~~~~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREKGV--K----N--VVEAKAEDLPFPSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHHTC--S----C--EEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHhhcC--C----C--EEECcHHHCCCCCCCEEEEEEc
Confidence            789999999996 666677777   37899999999999999998753  2    2  8899998877666679999986


Q ss_pred             ccc-CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALA-GNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALV-gm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..+ ++.++...+++++.++|+|||++++...
T Consensus       122 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          122 GDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            433 3335689999999999999999998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.27  E-value=4.7e-11  Score=116.44  Aligned_cols=107  Identities=20%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC-ChhHHHHHHHHH-----hhcCCcC----CCeEEEEccccc-
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI-DETANNLARRIV-----SSDDEIE----KRMKFLTCDIME-  196 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI-DpeAIelAR~li-----~~lG~Ls----~rI~Fi~GDA~e-  196 (535)
                      ...++++|||||||+ |..++.+|+.  ...+|+++|+ |+++++.|++++     +..| +.    .+++++..|..+ 
T Consensus        76 ~~~~~~~vLDlG~G~-G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~-~~~~~~~~v~~~~~~~~~~  151 (281)
T 3bzb_A           76 ELIAGKTVCELGAGA-GLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCS-SETVKRASPKVVPYRWGDS  151 (281)
T ss_dssp             GGTTTCEEEETTCTT-SHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSC
T ss_pred             hhcCCCeEEEecccc-cHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc-cccCCCCCeEEEEecCCCc
Confidence            345788999999996 7777888882  2349999999 999999999999     6666 54    579998666433 


Q ss_pred             ---ccc--CCCCcceEEeccccCChhhHHHHHHHHHhhcc---c--CeEEEE
Q 041205          197 ---VKE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMK---E--GGVLLV  238 (535)
Q Consensus       197 ---l~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLK---P--GGvLVv  238 (535)
                         +..  ..+.||+|++...+...++...++..+.++|+   |  ||++++
T Consensus       152 ~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          152 PDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             THHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             cHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence               211  23579999975444335788999999999999   9  997655

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=1.2e-11  Score=120.63  Aligned_cols=105  Identities=18%  Similarity=0.158  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++++|||+|||+ |.-++.+|++ .++++|+|+|+++++++.|+++++..| + .++.|+++|+.+. ...+.||+|
T Consensus       116 ~~~~~~~VLDlgcG~-G~~s~~la~~-~~~~~V~~vD~s~~av~~a~~n~~~n~-l-~~~~~~~~d~~~~-~~~~~~D~V  190 (272)
T 3a27_A          116 ISNENEVVVDMFAGI-GYFTIPLAKY-SKPKLVYAIEKNPTAYHYLCENIKLNK-L-NNVIPILADNRDV-ELKDVADRV  190 (272)
T ss_dssp             SCCTTCEEEETTCTT-TTTHHHHHHH-TCCSEEEEEECCHHHHHHHHHHHHHTT-C-SSEEEEESCGGGC-CCTTCEEEE
T ss_pred             hcCCCCEEEEecCcC-CHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCEEEEECChHHc-CccCCceEE
Confidence            357889999999996 5556777773 457799999999999999999999988 5 4789999999887 334569999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++...    ....++..+.+.|+|||++++...
T Consensus       191 i~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          191 IMGYVH----KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             EECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCcc----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            997543    456789999999999999987553

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.27  E-value=1.8e-11  Score=121.46  Aligned_cols=115  Identities=20%  Similarity=0.224  Sum_probs=86.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC---------CcCCCeEEEE
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD---------EIEKRMKFLT  191 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG---------~Ls~rI~Fi~  191 (535)
                      ..+...+.+.++++|||||||+ |+.++.+|+...+.++|+++|+++++++.|+++++..|         .+..+++|++
T Consensus        95 ~~~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           95 NMILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3334444568899999999997 66667777743456899999999999999999988632         0236899999


Q ss_pred             cccccccc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          192 CDIMEVKE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       192 GDA~el~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+.+...  ..+.||+|+++..     ....++.++.+.|+|||++++-.+
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             SCTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEES
T ss_pred             CChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99987632  2346999998643     234589999999999999998664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.27  E-value=8.3e-12  Score=118.23  Aligned_cols=107  Identities=15%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhc---CCcCCC-------------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSD---DEIEKR-------------------  186 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~l---G~Ls~r-------------------  186 (535)
                      .++.+|||+|||+ |..++.+++.. .++.+|+|+|+|+.+++.|++.+...   | +..+                   
T Consensus        50 ~~~~~vLD~gcGs-G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           50 DGPVTLWDPCCGS-GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG-LTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             CSCEEEEETTCTT-SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCeEEECCCCC-CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc-ccccchhhhhhhhhcccccchhh
Confidence            4678999999996 66677777731 45789999999999999999998876   5 4333                   


Q ss_pred             ------eE-------------EEEcccccccc-----CCCCcceEEeccccC-C--------hhhHHHHHHHHHhhcccC
Q 041205          187 ------MK-------------FLTCDIMEVKE-----KLGEYDCIILAALAG-N--------EEEKAKILGHIRKYMKEG  233 (535)
Q Consensus       187 ------I~-------------Fi~GDA~el~~-----dL~~FDvVfiaALVg-m--------~edK~~VL~eL~rvLKPG  233 (535)
                            ++             |+++|+.+...     ....||+|+.....+ .        ...+..+++++.++|+||
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                  77             99999987442     223799999853221 1        256779999999999999


Q ss_pred             eEEEE
Q 041205          234 GVLLV  238 (535)
Q Consensus       234 GvLVv  238 (535)
                      |++++
T Consensus       208 G~l~~  212 (250)
T 1o9g_A          208 AVIAV  212 (250)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            99998

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.26  E-value=1.9e-11  Score=123.50  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEccccccccC----CCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVKEK----LGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~~d----L~~F  204 (535)
                      .++.+|||+|||+ |..++.+|+   .|++|++||+|+.+++.|+++++..| +.+ +++|+++|+.+....    ...|
T Consensus       152 ~~~~~VLDlgcGt-G~~sl~la~---~ga~V~~VD~s~~al~~a~~n~~~~g-l~~~~v~~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYT-GVASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SSCCEEEEETCTT-CHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             CCCCcEEEccccc-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECcHHHHHHHHHhcCCCc
Confidence            4678999999997 555677777   46799999999999999999999988 655 599999999876542    3579


Q ss_pred             ceEEecccc-C---------ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALA-G---------NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALV-g---------m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+++.-. +         ...++..++..+.++|+|||+|++-.
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            999985220 1         13567899999999999999966644

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.26  E-value=1.8e-11  Score=113.27  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++.+|||||||+ |..+..++.   .    +|+|+++++++.|++.         +++|+++|+.+++...+.||+|++.
T Consensus        47 ~~~~vLDiG~G~-G~~~~~l~~---~----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~  109 (219)
T 1vlm_A           47 PEGRGVEIGVGT-GRFAVPLKI---K----IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMV  109 (219)
T ss_dssp             CSSCEEEETCTT-STTHHHHTC---C----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCcEEEeCCCC-CHHHHHHHH---H----hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEc
Confidence            489999999997 555566655   1    9999999999999876         3689999998876655679999987


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ..++..++...++.++.+.|+|||.+++...
T Consensus       110 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A          110 TTICFVDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            6554447789999999999999999998653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.26  E-value=1.1e-11  Score=115.56  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC-----CcEEEEEeCChhHHHHHHHHHhhcCCc----CCCeEEEEcccccccc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK-----STHFDNIDIDETANNLARRIVSSDDEI----EKRMKFLTCDIMEVKE  199 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~-----Ga~VtGIDIDpeAIelAR~li~~lG~L----s~rI~Fi~GDA~el~~  199 (535)
                      +.++.+|||||||+ |+.+..+++....     .++|+++|+++++++.|++.+...| +    ..+++|+++|+.+...
T Consensus        82 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~  159 (227)
T 1r18_A           82 LKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGYP  159 (227)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCCG
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEEECCcccCCC
Confidence            56789999999997 6666777773211     3699999999999999999988765 2    2689999999976322


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.+.||+|++.+..+.      +++++.+.|+|||++++-..
T Consensus       160 ~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPD------TPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GGCSEEEEEECSCBSS------CCHHHHHTEEEEEEEEEEES
T ss_pred             cCCCccEEEECCchHH------HHHHHHHHhcCCCEEEEEEe
Confidence            3357999998866632      34788999999999988654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.25  E-value=3.5e-11  Score=118.74  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=81.5

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+.+.++.+|||||||+ |.-++.+|+   .|++|+|||+|++|++.|++.+....   -.+.+...+........+
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~---~g~~V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~~~~~~~~  109 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALE---RGASVTVFDFSQRMCDDLAEALADRC---VTIDLLDITAEIPKELAG  109 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSCCCGGGTT
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHhcc---ceeeeeecccccccccCC
Confidence            33445667899999999996 777788888   47899999999999999999876542   123332222200011135


Q ss_pred             CcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          203 EYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       203 ~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      .||+|+....++ + .++...++..+.++| |||+|++-...
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            799999876654 3 567888999999999 99999886543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.25  E-value=1.2e-11  Score=130.27  Aligned_cols=99  Identities=16%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             CCCCEEEEEccC------CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---
Q 041205          130 AQLKKVAFVGSG------PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---  200 (535)
Q Consensus       130 ~~pkRVLeIGSG------plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---  200 (535)
                      .++.+|||||||      ++| .++.++++++|+++|+|||+++++.        . .  ..+|+|+++|+.++++.   
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG-~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~--~~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGG-GSLRMWKSFFPRGQIYGLDIMDKSH--------V-D--ELRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCC-HHHHHHHHHCTTCEEEEEESSCCGG--------G-C--BTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCH-HHHHHHHHhCCCCEEEEEECCHHHh--------h-c--CCCcEEEEecccccchhhhh
Confidence            468999999999      444 4556666567899999999999972        1 2  36899999999887654   


Q ss_pred             ---CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 ---LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 ---L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                         .+.||+||.++. +...+...+|++++++|||||++++.+.
T Consensus       283 ~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          283 ARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             HHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             hcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence               478999998754 3457889999999999999999999774

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.24  E-value=2.6e-11  Score=119.35  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc---ce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY---DC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F---Dv  206 (535)
                      .++.+|||||||+ |.-++.+|+.  ++++|+|+|+|+++++.|+++++..| +.++++|+++|+.+...  +.|   |+
T Consensus       122 ~~~~~vLDlG~Gs-G~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~-l~~~v~~~~~D~~~~~~--~~f~~~D~  195 (284)
T 1nv8_A          122 YGIKTVADIGTGS-GAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFK--EKFASIEM  195 (284)
T ss_dssp             HTCCEEEEESCTT-SHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGG--GGTTTCCE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcchhhcc--cccCCCCE
Confidence            3578999999996 6777888884  89999999999999999999999999 77789999999986432  468   99


Q ss_pred             EEeccccC-----------Ch--------hhHHHHHHHHH-hhcccCeEEEEEcc
Q 041205          207 IILAALAG-----------NE--------EEKAKILGHIR-KYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVg-----------m~--------edK~~VL~eL~-rvLKPGGvLVvRsa  241 (535)
                      |+...-..           ..        .+...+++++. +.++|||.+++-..
T Consensus       196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            99851100           00        11237899999 99999999998543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.23  E-value=2.3e-11  Score=110.53  Aligned_cols=99  Identities=17%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~~dL~~FDvV  207 (535)
                      .++.+|||||||+ |..+..+++.   +.+|+|+|+++.+++.|++..         .+|+++|+.+  .+...+.||+|
T Consensus        31 ~~~~~vLdiG~G~-G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSS-GALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEE
Confidence            5789999999996 6666777772   699999999999999888643         2688999876  33334579999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++....+..++...++.++.+.|+|||.+++..+
T Consensus        98 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           98 IFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             EECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9875554446778999999999999999998653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.23  E-value=3.9e-11  Score=124.29  Aligned_cols=128  Identities=26%  Similarity=0.324  Sum_probs=92.5

Q ss_pred             ccchhhHHhHH-HH-----------HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 041205          107 PYYENYVKLAK-LE-----------YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR  174 (535)
Q Consensus       107 pYy~NYv~Lir-lE-----------~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR  174 (535)
                      .||+.|..+.- .|           ..++.+....-++++|||||||+ |+-+++.|+  ....+|++||.++ +++.|+
T Consensus        47 ~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~Gt-GiLs~~Aa~--aGA~~V~ave~s~-~~~~a~  122 (376)
T 4hc4_A           47 LYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGT-GILSIFCAQ--AGARRVYAVEASA-IWQQAR  122 (376)
T ss_dssp             --CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTT-SHHHHHHHH--TTCSEEEEEECST-THHHHH
T ss_pred             hhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCc-cHHHHHHHH--hCCCEEEEEeChH-HHHHHH
Confidence            67788876542 11           12333222234789999999996 666788877  2235899999996 889999


Q ss_pred             HHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc---cCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          175 RIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL---AGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       175 ~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL---Vgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++++..| ++++|+++++|+.++..+ ..||+|+..-+   .........++....+.|+|||+++-..
T Consensus       123 ~~~~~n~-~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          123 EVVRFNG-LEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             HHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             HHHHHcC-CCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            9999999 899999999999876544 57999986322   1112356788888889999999987644

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.23  E-value=7.3e-11  Score=108.12  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||++ ..+..+      +.+|+|+|+++.                 +++|+++|+.+++...+.||+|+
T Consensus        65 ~~~~~~vLDiG~G~G-~~~~~l------~~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~  120 (215)
T 2zfu_A           65 RPASLVVADFGCGDC-RLASSI------RNPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAV  120 (215)
T ss_dssp             SCTTSCEEEETCTTC-HHHHHC------CSCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred             cCCCCeEEEECCcCC-HHHHHh------hccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEE
Confidence            457899999999974 443433      368999999998                 35788999988766666799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-----ccCCcEEEEEEcCCCcceeeeEEEecCC
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-----ELFDFKVLSIFHPTNDVINSVVLLQLPK  282 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-----dl~GFeil~v~hP~~eVINSVVvARK~~  282 (535)
                      +....+. ++...++.++.++|+|||.+++.....    .++..+.     .-.||++.......+ . ..++++||..
T Consensus       121 ~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~----~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~-~~~~~~~k~~  192 (215)
T 2zfu_A          121 FCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS----RFEDVRTFLRAVTKLGFKIVSKDLTNS-H-FFLFDFQKTG  192 (215)
T ss_dssp             EESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG----GCSCHHHHHHHHHHTTEEEEEEECCST-T-CEEEEEEECS
T ss_pred             Eehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC----CCCCHHHHHHHHHHCCCEEEEEecCCC-e-EEEEEEEecC
Confidence            8765553 788999999999999999999875422    1111111     237999876544333 2 3467778753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.22  E-value=5.5e-11  Score=134.32  Aligned_cols=118  Identities=12%  Similarity=0.132  Sum_probs=90.6

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh------cCCcCCCeEEEEcc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS------DDEIEKRMKFLTCD  193 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~------lG~Ls~rI~Fi~GD  193 (535)
                      +..+...+...++.+|||||||+ |..++.||++..+..+|+|||+|+++++.|++.++.      .| + .+|+|+++|
T Consensus       710 le~LLelL~~~~g~rVLDVGCGT-G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~g-l-~nVefiqGD  786 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGS-GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN-V-KSATLYDGS  786 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSS-SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSS-C-SEEEEEESC
T ss_pred             HHHHHHHhcccCCCEEEEECCCC-CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcC-C-CceEEEECc
Confidence            33333334336889999999996 777788888322458999999999999999996653      24 3 489999999


Q ss_pred             ccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          194 IMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.+++...+.||+|++...+++  .+....+++++.++|+|| .+++-.+
T Consensus       787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9998887788999998766644  344557999999999999 6666554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.22  E-value=1.1e-11  Score=125.81  Aligned_cols=128  Identities=12%  Similarity=0.122  Sum_probs=92.7

Q ss_pred             cCccchhhHHhHH----HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc
Q 041205          105 RFPYYENYVKLAK----LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD  180 (535)
Q Consensus       105 ~FpYy~NYv~Lir----lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l  180 (535)
                      .+.|+..+.....    .-...+.....+.++.+|||||||+ |..+..+++   .|.+|+|||+|+.+++.|++.    
T Consensus        77 ~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~gvD~s~~~~~~a~~~----  148 (416)
T 4e2x_A           77 VYPYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCND-GIMLRTIQE---AGVRHLGFEPSSGVAAKAREK----  148 (416)
T ss_dssp             TCCCCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTT-TTTHHHHHH---TTCEEEEECCCHHHHHHHHTT----
T ss_pred             CccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCC-CHHHHHHHH---cCCcEEEECCCHHHHHHHHHc----
Confidence            4556555543333    2233344444557889999999996 667777877   477999999999999999876    


Q ss_pred             CCcCCC-eEEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          181 DEIEKR-MKFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       181 G~Ls~r-I~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      | +... ..|..+++.+++...+.||+|+....++..++...++++++++|||||++++..+
T Consensus       149 ~-~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          149 G-IRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             T-CCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-CCcceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4 2221 2244556655555557899999876665557999999999999999999999754

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.21  E-value=1.5e-11  Score=116.23  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=74.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCC-----CCc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKL-----GEY  204 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL-----~~F  204 (535)
                      ++.+|||||||++.+ ++.+|.+ .++++|+|+|+|+++++.|+++++..| +.++++|+++|+.+. ...+     +.|
T Consensus        65 ~~~~vLDlG~G~G~~-~~~la~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCI-YPLLGAT-LNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTH-HHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHH-HHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            578999999997544 4556652 467999999999999999999999999 777899999998762 2122     469


Q ss_pred             ceEEeccccCC-h--------------hhHHHHHHHHHhhcccCeEEEE
Q 041205          205 DCIILAALAGN-E--------------EEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       205 DvVfiaALVgm-~--------------edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+|++.--... .              ++...++..++++|||||.+.+
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            99998622111 0              1234567788889999887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.21  E-value=3.4e-11  Score=117.94  Aligned_cols=98  Identities=18%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEccccccccCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ..+++||+||||. |.++..+++ + + .+|+++|+|+++++.|++.+...  + + ..+++++.+|+.+..   +.||+
T Consensus        71 ~~~~~VL~iG~G~-G~~~~~ll~-~-~-~~v~~veid~~~i~~ar~~~~~~~~~-~~~~rv~~~~~D~~~~~---~~fD~  142 (262)
T 2cmg_A           71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THIDFVQADEKILDSFISFFPHFHEV-KNNKNFTHAKQLLDLDI---KKYDL  142 (262)
T ss_dssp             SCCCEEEEESSCC-HHHHHHHTT-S-S-CEEEEECSCHHHHGGGTTTSTTHHHH-HTCTTEEEESSGGGSCC---CCEEE
T ss_pred             CCCCEEEEEeCCc-CHHHHHHHh-C-C-CEEEEEECCHHHHHHHHHHHHhhccc-cCCCeEEEEechHHHHH---hhCCE
Confidence            5679999999995 777787877 4 5 89999999999999999987542  2 2 358999999998755   67999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++++..     ...+++.+.+.|+|||++++..
T Consensus       143 Ii~d~~d-----p~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          143 IFCLQEP-----DIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             EEESSCC-----CHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEECCCC-----hHHHHHHHHHhcCCCcEEEEEc
Confidence            9998433     3459999999999999999964

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.20  E-value=8.7e-11  Score=120.43  Aligned_cols=107  Identities=15%  Similarity=0.205  Sum_probs=85.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEccccccccC----CCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVKEK----LGE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~~d----L~~  203 (535)
                      .++++|||+|||+ |.-++.+|+   .|+ +|+|||+|+++++.|+++++..| +.+ +++|+++|+.+....    ...
T Consensus       211 ~~~~~VLDl~cGt-G~~sl~la~---~ga~~V~~vD~s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYT-AAFSVAAAM---GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTT-THHHHHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEeecc-CHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHHhCCC
Confidence            5689999999996 555677777   244 89999999999999999999999 665 899999999875432    236


Q ss_pred             cceEEecccc-----C---C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALA-----G---N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALV-----g---m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+|+++.-.     +   . ...+.+++..+.+.|+|||+|++-..
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999986222     1   1 46677889999999999999988653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.20  E-value=3.5e-11  Score=120.15  Aligned_cols=109  Identities=21%  Similarity=0.237  Sum_probs=83.3

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +.....+.++.+|||||||+ |..++.+++ .+|+.+++++|+ +.++.  ++.++..| +.++|+|+.+|+.+ +.+  
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~--~~~~~~~~-~~~~v~~~~~d~~~-~~p--  246 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGR-GGFLLTVLR-EHPGLQGVLLDR-AEVVA--RHRLDAPD-VAGRWKVVEGDFLR-EVP--  246 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTT-SHHHHHHHH-HCTTEEEEEEEC-HHHHT--TCCCCCGG-GTTSEEEEECCTTT-CCC--
T ss_pred             HHHhCCccCCceEEEECCcc-CHHHHHHHH-HCCCCEEEEecC-HHHhh--cccccccC-CCCCeEEEecCCCC-CCC--
Confidence            33344567889999999996 666677777 478999999999 55555  44455566 67899999999863 222  


Q ss_pred             CcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+|++....+.  .++..++|+++++.|||||+|++.+
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            8999998766654  3344799999999999999998865

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.19  E-value=8.6e-11  Score=116.47  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             CCCEEEEEccCCCh--h-hHHHHHhhcCC----CcEEEEEeCChhHHHHHHHHHhh-----------------------c
Q 041205          131 QLKKVAFVGSGPMP--L-TSIILASQHMK----STHFDNIDIDETANNLARRIVSS-----------------------D  180 (535)
Q Consensus       131 ~pkRVLeIGSGplP--l-TAI~LAk~~l~----Ga~VtGIDIDpeAIelAR~li~~-----------------------l  180 (535)
                      ++.||+++|||++-  | -|+.+++. .+    +.+|+|+|+|++|++.|++.+-.                       .
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~-~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~  183 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADA-LGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  183 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHH-HCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHh-cccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence            46899999999753  2 35667663 22    57999999999999999987510                       0


Q ss_pred             C------CcCCCeEEEEccccccccC-CCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          181 D------EIEKRMKFLTCDIMEVKEK-LGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       181 G------~Ls~rI~Fi~GDA~el~~d-L~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      |      .+.++|+|.++|..+.+.+ .+.||+|++-.... + .+.+.+++..+++.|+|||.|++-...
T Consensus       184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence            1      0124799999999874333 35799999876553 3 567799999999999999999995543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.19  E-value=7.7e-11  Score=119.69  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=82.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccC-CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEK-LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~d-L~~FDvV  207 (535)
                      .++++||||| |+ |..++.+|+ ..++.+|+++|+|+++++.|+++++..| +. +|+|+++|+.+ ++.. .+.||+|
T Consensus       171 ~~~~~VLDlG-G~-G~~~~~la~-~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~l~~~~~~~fD~V  245 (373)
T 2qm3_A          171 LENKDIFVLG-DD-DLTSIALML-SGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRKPLPDYALHKFDTF  245 (373)
T ss_dssp             STTCEEEEES-CT-TCHHHHHHH-HTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTSCCCTTTSSCBSEE
T ss_pred             CCCCEEEEEC-CC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhhhchhhccCCccEE
Confidence            4689999999 96 666777777 3456899999999999999999999999 65 89999999987 4432 3469999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvL  236 (535)
                      +++...+. .....++.++.+.|+|||++
T Consensus       246 i~~~p~~~-~~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          246 ITDPPETL-EAIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             EECCCSSH-HHHHHHHHHHHHTBCSTTCE
T ss_pred             EECCCCch-HHHHHHHHHHHHHcccCCeE
Confidence            99854432 23588999999999999943

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.18  E-value=7e-11  Score=125.18  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ....++++|||||||+ |.-++.+|+  .+..+|+|||+++ +++.|+++++..| +.++|+|+.+|+.++..+ +.||+
T Consensus       154 l~~~~~~~VLDiGcGt-G~la~~la~--~~~~~V~gvD~s~-~l~~A~~~~~~~g-l~~~v~~~~~d~~~~~~~-~~fD~  227 (480)
T 3b3j_A          154 HTDFKDKIVLDVGCGS-GILSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-EQVDI  227 (480)
T ss_dssp             GGGTTTCEEEEESCST-THHHHHHHH--TTCSEEEEEECHH-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEE
T ss_pred             hhhcCCCEEEEecCcc-cHHHHHHHH--cCCCEEEEEEcHH-HHHHHHHHHHHcC-CCCcEEEEECchhhCccC-CCeEE
Confidence            3445789999999996 566677777  3567999999999 9999999999999 788999999999875433 46999


Q ss_pred             EEeccccC-C-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAG-N-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+...... + .++....+.++.+.|+|||+++.
T Consensus       228 Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          228 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99864321 1 25667788899999999999985

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.18  E-value=5.1e-11  Score=119.33  Aligned_cols=113  Identities=17%  Similarity=0.257  Sum_probs=89.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+...++.+|||||||+ |..++.+++ ..++.+|+++|+|+.+++.|++.+...| +  .++|+.+|+.+..  
T Consensus       186 ~~ll~~l~~~~~~~VLDlGcG~-G~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~--~~~~~~~d~~~~~--  258 (343)
T 2pjd_A          186 QLLLSTLTPHTKGKVLDVGCGA-GVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAANG-V--EGEVFASNVFSEV--  258 (343)
T ss_dssp             HHHHHHSCTTCCSBCCBTTCTT-SHHHHHHHH-HCTTCBCEEEESBHHHHHHHHHHHHHTT-C--CCEEEECSTTTTC--
T ss_pred             HHHHHhcCcCCCCeEEEecCcc-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C--CCEEEEccccccc--
Confidence            3444444335678999999996 666677777 3677899999999999999999999888 4  4688999987643  


Q ss_pred             CCCcceEEeccccCC-----hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGN-----EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm-----~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|++....+.     ..+...++.++.++|+|||.+++-.
T Consensus       259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            457999998754432     3567899999999999999998854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.16  E-value=5.4e-11  Score=126.30  Aligned_cols=112  Identities=14%  Similarity=0.079  Sum_probs=87.7

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCC
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGE  203 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~  203 (535)
                      ..+...++.+|||+||||++.| +.+|.....+++|+++|+|+.+++.+++++++.| +.  |.++++|+.++.. ..+.
T Consensus        95 ~~L~~~~g~~VLDlgaGpG~kt-~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~l~~~~~~~  170 (464)
T 3m6w_A           95 VLLDPKPGERVLDLAAAPGGKT-THLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRALAEAFGTY  170 (464)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHHHHHHHCSC
T ss_pred             HhcCcCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHHhhhhcccc
Confidence            3445678999999999997666 4555533345899999999999999999999999 54  9999999988763 3457


Q ss_pred             cceEEecccc---CC---hh----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALA---GN---EE----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|++++--   |+   .+                ...++|+++.+.|||||+|++-+
T Consensus       171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999986432   11   01                12789999999999999999854

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.16  E-value=1.7e-10  Score=120.41  Aligned_cols=111  Identities=24%  Similarity=0.245  Sum_probs=87.2

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--C
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--G  202 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~  202 (535)
                      .+...++++|||+||||++.|. .+|. ..++ ++|+++|+|+.+++.+++++++.| + .+++++++|+.+.+...  +
T Consensus       254 ~l~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~  329 (450)
T 2yxl_A          254 VLDPKPGETVVDLAAAPGGKTT-HLAE-LMKNKGKIYAFDVDKMRMKRLKDFVKRMG-I-KIVKPLVKDARKAPEIIGEE  329 (450)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHH-HHHH-HTTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCTTCCSSSSCSS
T ss_pred             hcCCCCcCEEEEeCCCccHHHH-HHHH-HcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEEEcChhhcchhhccC
Confidence            4456789999999999976665 5555 3455 899999999999999999999999 5 57999999998765323  4


Q ss_pred             CcceEEecccc---CC---hhhH----------------HHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALA---GN---EEEK----------------AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALV---gm---~edK----------------~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+|++++--   |+   .++.                ..++.++.+.|||||+|++-+
T Consensus       330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            69999986322   11   1121                679999999999999999865

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.16  E-value=1.1e-10  Score=116.33  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..|...+....  .++++|||+|||.+++| +.+|++  ..++|+++|+||.+++.++++++..| ++++|+++++|+.+
T Consensus       113 ~~er~ri~~~~--~~g~~VlD~~aG~G~~~-i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~-v~~~v~~~~~D~~~  186 (278)
T 3k6r_A          113 VKERVRMAKVA--KPDELVVDMFAGIGHLS-LPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRD  186 (278)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTTTTT-HHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTT
T ss_pred             HHHHHHHHHhc--CCCCEEEEecCcCcHHH-HHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCcHHH
Confidence            35555555433  68999999999976655 667773  45799999999999999999999999 88999999999988


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +... +.||.|++.-..    ....++....+.++|||+|.+..
T Consensus       187 ~~~~-~~~D~Vi~~~p~----~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          187 FPGE-NIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             CCCC-SCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hccc-cCCCEEEECCCC----cHHHHHHHHHHHcCCCCEEEEEe
Confidence            6543 569999986333    34568888999999999987754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.16  E-value=2.5e-10  Score=103.28  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCC--CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--------
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMK--STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--------  198 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~--Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--------  198 (535)
                      +.++.+|||||||++++| +.++++ .+  +++|+|+|+++.+           . . .+++|+++|+.+..        
T Consensus        20 ~~~~~~vLDlGcG~G~~~-~~l~~~-~~~~~~~v~gvD~s~~~-----------~-~-~~v~~~~~d~~~~~~~~~~~~~   84 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWC-QVILER-TKNYKNKIIGIDKKIMD-----------P-I-PNVYFIQGEIGKDNMNNIKNIN   84 (201)
T ss_dssp             CCTTEEEEEESCTTCHHH-HHHHHH-TTTSCEEEEEEESSCCC-----------C-C-TTCEEEECCTTTTSSCCC----
T ss_pred             CCCCCEEEEeCCCCCHHH-HHHHHH-cCCCCceEEEEeCCccC-----------C-C-CCceEEEccccchhhhhhcccc
Confidence            467899999999986555 566663 45  7999999999942           2 1 46899999998754        


Q ss_pred             -----------------cCCCCcceEEeccccCC----hhhH-------HHHHHHHHhhcccCeEEEEEcc
Q 041205          199 -----------------EKLGEYDCIILAALAGN----EEEK-------AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 -----------------~dL~~FDvVfiaALVgm----~edK-------~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                                       .....||+|+.+...+.    ..+.       ..++..+.+.|+|||.+++...
T Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             -------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                             23357999998754322    1222       2488999999999999998543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.15  E-value=1.3e-09  Score=99.16  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=80.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||+|||+ |..++.+++.  ...+|+|+|+|+.+++.|+++++..| +  +++|+++|+.+++   ..||+|+
T Consensus        47 ~~~~~~vlD~g~G~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~---~~~D~v~  117 (207)
T 1wy7_A           47 DIEGKVVADLGAGT-GVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSEFN---SRVDIVI  117 (207)
T ss_dssp             SSTTCEEEEETCTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGGCC---CCCSEEE
T ss_pred             CCCcCEEEEeeCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHHcC---CCCCEEE
Confidence            45789999999996 5566777772  33589999999999999999999988 5  8999999998753   4799999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++...+.  ......+++.+.+.+  |+++++.
T Consensus       118 ~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          118 MNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             ECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            8755443  234567899999988  7777665

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.15  E-value=8.6e-11  Score=124.46  Aligned_cols=112  Identities=17%  Similarity=0.144  Sum_probs=88.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEY  204 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~F  204 (535)
                      .+...++++|||+||||++.|. .+|.....+++|+++|+|+.+++.+++++++.| + .+|.++++|+.++.. ..+.|
T Consensus       100 ~L~~~~g~~VLDlcaGpGgkt~-~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~-~nv~v~~~Da~~l~~~~~~~F  176 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAPGGKST-QLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-V-SNAIVTNHAPAELVPHFSGFF  176 (456)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-C-SSEEEECCCHHHHHHHHTTCE
T ss_pred             HcCCCCCCEEEEECCCcCHHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhhhccccC
Confidence            4456889999999999976664 555533445899999999999999999999999 5 479999999987653 23579


Q ss_pred             ceEEecccc---CC---hh----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALA---GN---EE----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALV---gm---~e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|++++--   |+   .+                .-.++|.++.+.|||||+|++-+
T Consensus       177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999997541   21   11                11288999999999999999855

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.15  E-value=1.3e-10  Score=123.24  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             hCCC--CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCC
Q 041205          127 TGVA--QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGE  203 (535)
Q Consensus       127 ~~l~--~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~  203 (535)
                      +...  ++.+|||+||||++.|. .+|.....+++|+++|+|+.+++.+++++++.| + .+|.++++|+.++.. ..+.
T Consensus       111 L~~~~~~g~~VLDl~aGpG~kt~-~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~-~nv~~~~~D~~~~~~~~~~~  187 (479)
T 2frx_A          111 LFADGNAPQRVMDVAAAPGSKTT-QISARMNNEGAILANEFSASRVKVLHANISRCG-I-SNVALTHFDGRVFGAAVPEM  187 (479)
T ss_dssp             HTTTTCCCSEEEESSCTTSHHHH-HHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCCSTTHHHHSTTC
T ss_pred             hCcccCCCCEEEEeCCCCCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHhhhhcccc
Confidence            3445  89999999999976665 556633346899999999999999999999999 5 479999999987654 3356


Q ss_pred             cceEEecccc---CC---hh----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALA---GN---EE----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALV---gm---~e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|++++--   |+   .+                ...++|.++.+.|||||+|++-+
T Consensus       188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            9999996322   21   01                13578999999999999999865

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.15  E-value=2.2e-10  Score=114.87  Aligned_cols=107  Identities=15%  Similarity=0.238  Sum_probs=80.0

Q ss_pred             CCCEEEEEccCC--ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----C--CC
Q 041205          131 QLKKVAFVGSGP--MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----K--LG  202 (535)
Q Consensus       131 ~pkRVLeIGSGp--lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----d--L~  202 (535)
                      ...+|||||||.  .|.+. .+|++..|+++|++||.|+.|++.||+++...+  ..+++|+++|+.+...    .  ..
T Consensus        78 g~~q~LDLGcG~pT~~~~~-~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLH-EIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHH-HHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHHH-HHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccChhhhhccccccc
Confidence            458999999994  34443 344445789999999999999999999987654  2579999999987521    0  12


Q ss_pred             Ccc-----eEEeccccCChhh---HHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYD-----CIILAALAGNEEE---KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FD-----vVfiaALVgm~ed---K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||     .|++.+.+|+.++   ...++..+++.|+|||+|++..
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            344     4555555555233   5789999999999999999875

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.14  E-value=1.2e-10  Score=116.61  Aligned_cols=108  Identities=12%  Similarity=0.081  Sum_probs=90.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcC----CCcEEEEEeCCh--------------------------hHHHHHHHHHhh
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHM----KSTHFDNIDIDE--------------------------TANNLARRIVSS  179 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l----~Ga~VtGIDIDp--------------------------eAIelAR~li~~  179 (535)
                      ..+.+|||||+. .|+|+++||....    ++.+|+++|..+                          ..++.+++++++
T Consensus       105 ~~pg~IlEiGv~-~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          105 NVPGDLVETGVW-RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TCCCEEEEECCT-TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             CCCCcEEEeecC-chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            568899999997 7999999987321    588999999642                          257889999999


Q ss_pred             cCCc-CCCeEEEEccccccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          180 DDEI-EKRMKFLTCDIMEVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       180 lG~L-s~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .| + .++|+++.||+.+.+...  +.||+||+|+.+.  +....+|+.+.++|+|||+|++++.
T Consensus       184 ~g-l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 YD-LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TT-CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             cC-CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            99 7 489999999998866554  4699999998763  4567899999999999999999986

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.13  E-value=1.6e-10  Score=118.12  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=86.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc-CCCeEEEEccccccccC----CCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI-EKRMKFLTCDIMEVKEK----LGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L-s~rI~Fi~GDA~el~~d----L~~F  204 (535)
                      .++++|||+|||+++ -++.+|+.  ...+|+|||+|+++++.|+++++..| + .++++|+++|+.+....    ...|
T Consensus       219 ~~~~~VLDl~cG~G~-~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGG-FAVSALMG--GCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCS-HHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEeeccCCH-HHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHhcCCCC
Confidence            478999999999754 55677772  24699999999999999999999988 6 55899999999876543    2469


Q ss_pred             ceEEecccc---------CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALA---------GNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALV---------gm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+|+++.-.         ........++..+.+.|+|||+|++-+.
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999997321         1125778999999999999999988653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.13  E-value=2.2e-10  Score=116.64  Aligned_cols=113  Identities=18%  Similarity=0.091  Sum_probs=86.8

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+.... ..++.+|||+|||+ |..++.+|. ..+.++|+|+|+|+.+++.|+++++..| +.++|+|+++|+.+++..
T Consensus       208 ~~l~~~~-~~~~~~vLD~gCGs-G~~~i~~a~-~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~i~~~~~D~~~~~~~  283 (373)
T 3tm4_A          208 NAMIELA-ELDGGSVLDPMCGS-GTILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDKIKFIQGDATQLSQY  283 (373)
T ss_dssp             HHHHHHH-TCCSCCEEETTCTT-CHHHHHHHH-TTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGGCEEEECCGGGGGGT
T ss_pred             HHHHHhh-cCCCCEEEEccCcC-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCcc
Confidence            3333334 57889999999996 566677777 3444599999999999999999999999 778999999999998876


Q ss_pred             CCCcceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEE
Q 041205          201 LGEYDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       201 L~~FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+.||+|+++-..|.        ..-+..+++.+.++| +|+.+++
T Consensus       284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            678999999644321        233578899999988 4333333

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.12  E-value=1.5e-10  Score=118.00  Aligned_cols=108  Identities=22%  Similarity=0.162  Sum_probs=86.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----L~~FD  205 (535)
                      .++++|||+|||+ |.-++.+|+.  ...+|+|+|+|+++++.|+++++..| +.++++|+++|+.+....    ...||
T Consensus       216 ~~~~~VLDl~~G~-G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYT-GGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCC-CHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHHHHHHHHhhCCCCC
Confidence            3789999999996 5556777772  33599999999999999999999988 666899999999876542    35799


Q ss_pred             eEEecccc-CC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALA-GN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALV-gm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+++.-. +.        ......++..+.+.|+|||+|++-+.
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99997422 10        15678899999999999998888654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.12  E-value=1.4e-10  Score=116.47  Aligned_cols=99  Identities=20%  Similarity=0.255  Sum_probs=83.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|||+|||++++ ++. |+   .+.+|+|+|+|+.+++.|+++++..| +.++++|+++|+.+..   +.||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~-~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~~~---~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPF-SIA-CK---NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVREVD---VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHH-HHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEccCccCHH-HHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHHhc---CCCcEEEE
Confidence            5789999999997544 455 76   57899999999999999999999999 7779999999998765   67999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +-..    .-..++..+.+.|+|||.+++-+.
T Consensus       265 dpP~----~~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          265 NLPK----FAHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             CCTT----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcH----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence            7332    123889999999999999888653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.11  E-value=2.6e-10  Score=118.01  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGE  203 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~  203 (535)
                      .+...++.+|||+||||++.|. .+|+ ..++++|+++|+|+.+++.+++++++.| +  +++++++|+.+..  ...+.
T Consensus       241 ~l~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~--~~~~~~~D~~~~~~~~~~~~  315 (429)
T 1sqg_A          241 WLAPQNGEHILDLCAAPGGKTT-HILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLG-M--KATVKQGDGRYPSQWCGEQQ  315 (429)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHH-HHHH-HCTTCEEEEEESSTTTHHHHHHHHHHTT-C--CCEEEECCTTCTHHHHTTCC
T ss_pred             HcCCCCcCeEEEECCCchHHHH-HHHH-HcCCCEEEEECCCHHHHHHHHHHHHHcC-C--CeEEEeCchhhchhhcccCC
Confidence            4456789999999999966665 5555 3566899999999999999999999999 4  5899999998765  23356


Q ss_pred             cceEEecccc---CC---hhh----------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALA---GN---EEE----------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALV---gm---~ed----------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|++++--   |+   .++                ...++.++.+.|||||+|++-+
T Consensus       316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999986421   11   111                1588999999999999999865

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.10  E-value=1.5e-10  Score=104.40  Aligned_cols=93  Identities=11%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..++.+++   .+ +|+|||+|+++++.        .   .+++|+++|+.+ +...+.||+|+.
T Consensus        22 ~~~~~vLD~GcG~-G~~~~~l~~---~~-~v~gvD~s~~~~~~--------~---~~~~~~~~d~~~-~~~~~~fD~i~~   84 (170)
T 3q87_B           22 LEMKIVLDLGTST-GVITEQLRK---RN-TVVSTDLNIRALES--------H---RGGNLVRADLLC-SINQESVDVVVF   84 (170)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHTT---TS-EEEEEESCHHHHHT--------C---SSSCEEECSTTT-TBCGGGCSEEEE
T ss_pred             CCCCeEEEeccCc-cHHHHHHHh---cC-cEEEEECCHHHHhc--------c---cCCeEEECChhh-hcccCCCCEEEE
Confidence            5678999999996 677788877   34 99999999999987        2   468999999977 333367999998


Q ss_pred             ccccCChh---------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEE---------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~e---------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+...         +...++..+.+.+ |||.+++-.
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            64443211         3467889999988 999998854

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.08  E-value=3e-10  Score=125.57  Aligned_cols=108  Identities=11%  Similarity=0.203  Sum_probs=86.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC-CCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK-LGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d-L~~FDvV  207 (535)
                      .++++|||+|||++++| +.+|.  ....+|++||+|+.+++.|+++++..| +. ++++|+++|+.+.... .+.||+|
T Consensus       538 ~~g~~VLDlg~GtG~~s-l~aa~--~ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~~l~~~~~~fD~I  613 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSAT-VHAGL--GGARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLAWLREANEQFDLI  613 (703)
T ss_dssp             CTTCEEEEESCTTCHHH-HHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             cCCCcEEEeeechhHHH-HHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHhcCCCccEE
Confidence            46899999999986554 66666  123469999999999999999999999 66 6899999999885433 3569999


Q ss_pred             Eecccc-----------CChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALA-----------GNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALV-----------gm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++.-.           ....++.+++..+.++|+|||+|++...
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            997421           1146888999999999999999997653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.07  E-value=2.7e-10  Score=118.05  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      .++++|||+|||++ .-++.+|+   .|+.|+++|+|+.+++.|+++++..| +.  .+|+++|+.+..... +.||+|+
T Consensus       213 ~~g~~VLDlg~GtG-~~sl~~a~---~ga~V~avDis~~al~~a~~n~~~ng-~~--~~~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          213 RPGERVLDVYSYVG-GFALRAAR---KGAYALAVDKDLEALGVLDQAALRLG-LR--VDIRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             CTTCEEEEESCTTT-HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-CC--CEEEESCHHHHHHTCCCCEEEEE
T ss_pred             cCCCeEEEcccchh-HHHHHHHH---cCCeEEEEECCHHHHHHHHHHHHHhC-CC--CcEEEccHHHHHHHhcCCCCEEE
Confidence            45899999999975 55577777   46779999999999999999999988 54  357799998865432 3499999


Q ss_pred             ecccc-C--------ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALA-G--------NEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALV-g--------m~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++... .        ....+.+++..+.+.|+|||+|++-+.
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            87432 0        024678999999999999999986553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.07  E-value=3.5e-10  Score=115.23  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----CCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----LGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----L~~FDv  206 (535)
                      ++++|||+|||+ |.-++.+|+.   +.+|+|+|+|+.+++.|+++++..| +. +++|+++|+.+....    ...||+
T Consensus       209 ~~~~VLDlg~G~-G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~-~~-~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYA-GGFALHLALG---FREVVAVDSSAEALRRAEENARLNG-LG-NVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTT-THHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeecc-CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-CC-CceEEECCHHHHHHHHHhcCCCeeE
Confidence            789999999996 5556777773   6899999999999999999999999 54 499999999876543    357999


Q ss_pred             EEecccc-CC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALA-GN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALV-gm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++.-. +.        ......++..+.+.|+|||+|++-+.
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9997432 10        25678899999999999999988653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.04  E-value=5.1e-10  Score=120.02  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~FDvV  207 (535)
                      .+|-|||||||| +|+-+..||+   .|+.|||||+++.+++.|+..+...|.  -+|+|+++|+.++..  ..+.||+|
T Consensus        65 ~~~~~vLDvGCG-~G~~~~~la~---~ga~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCA-QGFFSLSLAS---KGATIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCT-TSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCC-CcHHHHHHHh---CCCEEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHHHHhhhccCCCccEE
Confidence            467899999999 6889999999   599999999999999999999988873  479999999988743  34579999


Q ss_pred             EeccccCChhhHH--HHHHHHHhhcccCeEEEE
Q 041205          208 ILAALAGNEEEKA--KILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       208 fiaALVgm~edK~--~VL~eL~rvLKPGGvLVv  238 (535)
                      +....+++.++..  .-+..+.+.++++|.-.+
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            9876654333333  334456777888764443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.04  E-value=5.8e-10  Score=109.70  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=65.1

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ..+.+.++++|||||||++.+ +..+++   .+.+|+|||+|+.+++.+++.+...| +..+++|+++|+.+++  +..|
T Consensus        22 ~~~~~~~~~~VLDiG~G~G~l-t~~L~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~D~~~~~--~~~f   94 (285)
T 1zq9_A           22 DKAALRPTDVVLEVGPGTGNM-TVKLLE---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTD--LPFF   94 (285)
T ss_dssp             HHTCCCTTCEEEEECCTTSTT-HHHHHH---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSC--CCCC
T ss_pred             HhcCCCCCCEEEEEcCcccHH-HHHHHh---hCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcceeccc--chhh
Confidence            334557889999999997554 566666   25799999999999999999998877 5568999999997654  3479


Q ss_pred             ceEEecccc
Q 041205          205 DCIILAALA  213 (535)
Q Consensus       205 DvVfiaALV  213 (535)
                      |+|+.....
T Consensus        95 D~vv~nlpy  103 (285)
T 1zq9_A           95 DTCVANLPY  103 (285)
T ss_dssp             SEEEEECCG
T ss_pred             cEEEEecCc
Confidence            999985433

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.04  E-value=5.3e-10  Score=112.38  Aligned_cols=183  Identities=10%  Similarity=0.106  Sum_probs=114.8

Q ss_pred             CchhHHHHHHHHHHhhcCCcchhhhcCChHHHHHHHHHHHHHHHHhHhhhhHHHhHhhccCCCccccccCccchhhHHhH
Q 041205           37 PSKQVNILFSHLVKLCILPSSIDIKALPQEVQQMRQSLIILCARAESLLELEFATYLSKISLPLNDLNRFPYYENYVKLA  116 (535)
Q Consensus        37 PS~~VNaLFt~LV~lC~~~~~~dv~~l~~~vq~l~~~Lr~lca~AE~~LE~h~A~~Lls~~~pl~~L~~FpYy~NYv~Li  116 (535)
                      |-+.+.+.-.+|-..|.-..+    ...|....+..+|++...-+.-..=+.|..++++.-.+..  +.-|.|+..    
T Consensus        53 ~~~a~k~~k~~LH~i~ga~~~----~~~~~~~~~l~~l~~~~~~~d~~~~~~~~~~~l~~H~STr--eRLp~lD~f----  122 (281)
T 3lcv_B           53 VPDAVKRTKRGLHEIYGAFLP----PSPPNYAALLRHLDSAVDAGDDEAVRAALLRAMSVHISTR--ERLPHLDEF----  122 (281)
T ss_dssp             HHHHHHHHHHHHHHHTGGGSC----SSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTTSHHHH--HHGGGHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHhhcccCChHHHHHHHHHHHhcCCCHH--HHhHhHHHH----
Confidence            334566666666666653211    0112333444444433222222222555555555432211  122443332    


Q ss_pred             HHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          117 KLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       117 rlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                         +..+...  +.++.+|||||||.+|++..++..  .+.++|+++|+|+.+++.+++++..+| +  +.+|..+|...
T Consensus       123 ---Y~~i~~~--i~~p~~VLDLGCG~GpLAl~~~~~--~p~a~y~a~DId~~~le~a~~~l~~~g-~--~~~~~v~D~~~  192 (281)
T 3lcv_B          123 ---YRELFRH--LPRPNTLRDLACGLNPLAAPWMGL--PAETVYIASDIDARLVGFVDEALTRLN-V--PHRTNVADLLE  192 (281)
T ss_dssp             ---HHHHGGG--SCCCSEEEETTCTTGGGCCTTTTC--CTTCEEEEEESBHHHHHHHHHHHHHTT-C--CEEEEECCTTT
T ss_pred             ---HHHHHhc--cCCCceeeeeccCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHHhcC-C--CceEEEeeecc
Confidence               2222222  256899999999998888777643  589999999999999999999999999 4  47899999764


Q ss_pred             cccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+ .-+.||+|++.-.++.  ...|...+ .+...|+|||++|....
T Consensus       193 ~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          193 DR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             SC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             cC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            33 3356999998655543  45555666 89999999999998664

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.03  E-value=3.5e-09  Score=96.33  Aligned_cols=99  Identities=19%  Similarity=0.243  Sum_probs=74.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ...++.+|||+|||+ |..++.+++.  +..+|+|||+|+++++.|++++.       +++|+++|+.+++   +.||+|
T Consensus        48 ~~~~~~~vlD~gcG~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v  114 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGN-GILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTW  114 (200)
T ss_dssp             TSSBTSEEEEETCTT-CHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEE
T ss_pred             CCCCCCEEEEEeCCc-cHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEE
Confidence            345789999999996 5666777772  33479999999999999999865       4799999998753   579999


Q ss_pred             EeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +++...+.  ......+++.+.+.+  |+++++.+.
T Consensus       115 ~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~  148 (200)
T 1ne2_A          115 IMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA  148 (200)
T ss_dssp             EECCCC-------CHHHHHHHHHHE--EEEEEEEEG
T ss_pred             EECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC
Confidence            99865543  122357899999988  776666554

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.03  E-value=5.5e-10  Score=112.47  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||||||+ |..+..+++ ..|+.+++++|+ +.+++.|++.        .+|+|+.+|+.+ +.  ..||+|+
T Consensus       207 ~~~~~~vLDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~--~~~D~v~  272 (372)
T 1fp1_D          207 FEGISTLVDVGGGS-GRNLELIIS-KYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFA-SV--PQGDAMI  272 (372)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CC--CCEEEEE
T ss_pred             cCCCCEEEEeCCCC-cHHHHHHHH-HCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCccc-CC--CCCCEEE
Confidence            56789999999996 566677777 368899999999 9998877641        369999999876 32  3499999


Q ss_pred             eccccCChhhH--HHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEK--AKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK--~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +....+..++.  ..+|+++++.|+|||+|++.+
T Consensus       273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            87666543444  499999999999999998864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.02  E-value=4.7e-10  Score=115.72  Aligned_cols=102  Identities=21%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc---------------CCcCCCeEEEEcccc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD---------------DEIEKRMKFLTCDIM  195 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l---------------G~Ls~rI~Fi~GDA~  195 (535)
                      ++.+|||+|||+ |.-++.+|++ .++.+|+++|+|+++++.++++++..               | +. +++++++|+.
T Consensus        47 ~~~~VLDl~aGt-G~~~l~~a~~-~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~-~i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSAT-GIRGIRFALE-TPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EK-TIVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTT-SHHHHHHHHH-SSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SS-EEEEEESCHH
T ss_pred             CCCEEEECCCch-hHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CC-ceEEEcCcHH
Confidence            689999999997 5566777773 46678999999999999999999988               7 54 3999999998


Q ss_pred             ccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 EVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++.... ..||+|+++.. +   ....+++.+.+.++|||+|++..
T Consensus       123 ~~~~~~~~~fD~I~lDP~-~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLMAERHRYFHFIDLDPF-G---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHSTTCEEEEEECCS-S---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhccCCCCEEEeCCC-C---CHHHHHHHHHHhcCCCCEEEEEe
Confidence            765543 46999998853 2   23689999999999999887753

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.02  E-value=1.2e-09  Score=98.23  Aligned_cols=98  Identities=15%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCC---------cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE-Eccccccc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKS---------THFDNIDIDETANNLARRIVSSDDEIEKRMKFL-TCDIMEVK  198 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~G---------a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi-~GDA~el~  198 (535)
                      +.++.+|||||||+ |..++.++++ .+.         ++|+|+|+++.+           + + .+++++ ++|+.+..
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~~~~~~~~~~~v~~vD~s~~~-----------~-~-~~~~~~~~~d~~~~~   84 (196)
T 2nyu_A           20 LRPGLRVLDCGAAP-GAWSQVAVQK-VNAAGTDPSSPVGFVLGVDLLHIF-----------P-L-EGATFLCPADVTDPR   84 (196)
T ss_dssp             CCTTCEEEEETCCS-CHHHHHHHHH-TTTTCCCTTSCCCEEEEECSSCCC-----------C-C-TTCEEECSCCTTSHH
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHH-hccccccccCCCceEEEEechhcc-----------c-C-CCCeEEEeccCCCHH
Confidence            46789999999998 6666777774 332         899999999942           2 2 468999 99986543


Q ss_pred             c--------CCCCcceEEecccc---CC-hhhH-------HHHHHHHHhhcccCeEEEEEcc
Q 041205          199 E--------KLGEYDCIILAALA---GN-EEEK-------AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~--------dL~~FDvVfiaALV---gm-~edK-------~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .        +...||+|+.+...   +. ..+.       ..++.++.++|+|||.|++...
T Consensus        85 ~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           85 TSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            1        12469999975422   22 2233       5889999999999999998754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.02  E-value=4.9e-10  Score=113.80  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=77.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---------
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---------  201 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---------  201 (535)
                      .+.+|||+|||+ |.-++.+|+   ...+|+|||+|+++++.|+++++..| + ++++|+++|+.++...+         
T Consensus       213 ~~~~vLDl~cG~-G~~~l~la~---~~~~V~gvd~~~~ai~~a~~n~~~ng-~-~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGN-GNFSLALAR---NFDRVLATEIAKPSVAAAQYNIAANH-I-DNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTT-SHHHHHHGG---GSSEEEEECCCHHHHHHHHHHHHHTT-C-CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCC-CHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHHHHHhhccccccc
Confidence            368999999996 555578887   35799999999999999999999999 5 68999999998764321         


Q ss_pred             -------CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 -------GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 -------~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                             ..||+|+++-      ++..+...+.+.++|||.+++-+-
T Consensus       287 ~~~~~~~~~fD~Vv~dP------Pr~g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDP------PRSGLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             GGSCGGGCCEEEEEECC------CTTCCCHHHHHHHTTSSEEEEEES
T ss_pred             cccccccCCCCEEEECc------CccccHHHHHHHHhCCCEEEEEEC
Confidence                   2699999873      333445566777789998888763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.01  E-value=8.5e-10  Score=111.65  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=78.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..+..+|||||||+ |..++.+++ .+|+.+++++|+ +++++.|++.        .+|+|+.+|..+ +.+ .. |+|+
T Consensus       201 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p-~~-D~v~  266 (368)
T 3reo_A          201 FEGLTTIVDVGGGT-GAVASMIVA-KYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GVP-KG-DAIF  266 (368)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCC-CC-SEEE
T ss_pred             ccCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CCC-CC-CEEE
Confidence            56779999999996 667777777 478999999999 8888766531        479999999876 333 23 9999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...+|.  .++..++|+++++.|+|||+|++.+
T Consensus       267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            8766653  4566799999999999999998865

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.01  E-value=1.9e-10  Score=102.67  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~F  204 (535)
                      ++.++.+||+||||.                  +++|++++|++.|++.+.      .+++|+++|+.+++.   ..+.|
T Consensus         9 g~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~------~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALTG------NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TCCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHTT------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             CCCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhcc------cCcEEEEechhcCccccCCCCCE
Confidence            467899999999984                  139999999999998753      248999999998776   55679


Q ss_pred             ceEEeccccCCh-hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGNE-EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm~-edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+|+.....++. ++...++++++++|||||++++..+
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999986555554 7889999999999999999999653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.01  E-value=2.6e-09  Score=107.31  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             cccCccchhhHHhHHHHHHHH-HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          103 LNRFPYYENYVKLAKLEYGAL-IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       103 L~~FpYy~NYv~LirlE~~lL-~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      +...|.|..-.-.++.+-..+ ...+.+.++++|||+||||++.|. .+|....++++|+++|+|+.+++.+++++++.|
T Consensus        73 ~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~-~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g  151 (309)
T 2b9e_A           73 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTS-HLAALLKNQGKIFAFDLDAKRLASMATLLARAG  151 (309)
T ss_dssp             CTTSHHHHTTSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHH-HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            334444443322333343222 223456789999999999977775 455533456899999999999999999999999


Q ss_pred             CcCCCeEEEEccccccccCC---CCcceEEecccc---CC--h-hh------------------HHHHHHHHHhhcccCe
Q 041205          182 EIEKRMKFLTCDIMEVKEKL---GEYDCIILAALA---GN--E-EE------------------KAKILGHIRKYMKEGG  234 (535)
Q Consensus       182 ~Ls~rI~Fi~GDA~el~~dL---~~FDvVfiaALV---gm--~-ed------------------K~~VL~eL~rvLKPGG  234 (535)
                       + .+|+++++|+.++....   ..||.|++++--   |+  . ++                  -.++|.++.+.++ ||
T Consensus       152 -~-~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG  228 (309)
T 2b9e_A          152 -V-SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQ  228 (309)
T ss_dssp             -C-CSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CC
T ss_pred             -C-CeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CC
Confidence             5 57999999998765432   469999997432   22  1 11                  1247888888776 99


Q ss_pred             EEEEEc
Q 041205          235 VLLVRS  240 (535)
Q Consensus       235 vLVvRs  240 (535)
                      +|++.+
T Consensus       229 ~lvYsT  234 (309)
T 2b9e_A          229 RLVYST  234 (309)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            888754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.00  E-value=3.3e-09  Score=110.17  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=98.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+...+...++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|+++++.|+++++..| + .+++|+++|+.+...
T Consensus       275 ~~~~~~~l~~~~~~~VLDlgcG~-G~~~~~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~f~~~d~~~~l~  348 (433)
T 1uwv_A          275 VARALEWLDVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNG-L-QNVTFYHENLEEDVT  348 (433)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCTTSCCS
T ss_pred             HHHHHHhhcCCCCCEEEECCCCC-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHhh
Confidence            44444445556789999999995 777788888   37899999999999999999999988 5 489999999987432


Q ss_pred             ----CCCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEEEcc-cccccccCCCCcc-ccCCcEEEE--EEc--CC
Q 041205          200 ----KLGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLVRSA-KGARAFLYPVVEH-ELFDFKVLS--IFH--PT  268 (535)
Q Consensus       200 ----dL~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVvRsa-~GlR~fLYP~Vdp-dl~GFeil~--v~h--P~  268 (535)
                          ..+.||+|+++--- |+    ..+++.+.+ ++|++++.+.-. ..+    ...... .-.||++..  .++  |.
T Consensus       349 ~~~~~~~~fD~Vv~dPPr~g~----~~~~~~l~~-~~p~~ivyvsc~p~tl----ard~~~l~~~Gy~~~~~~~~d~Fp~  419 (433)
T 1uwv_A          349 KQPWAKNGFDKVLLDPARAGA----AGVMQQIIK-LEPIRIVYVSCNPATL----ARDSEALLKAGYTIARLAMLDMFPH  419 (433)
T ss_dssp             SSGGGTTCCSEEEECCCTTCC----HHHHHHHHH-HCCSEEEEEESCHHHH----HHHHHHHHHTTCEEEEEEEECCSTT
T ss_pred             hhhhhcCCCCEEEECCCCccH----HHHHHHHHh-cCCCeEEEEECChHHH----HhhHHHHHHCCcEEEEEEEeccCCC
Confidence                23469999997443 22    256776665 789887766321 111    000000 114777643  222  54


Q ss_pred             CcceeeeEEEec
Q 041205          269 NDVINSVVLLQL  280 (535)
Q Consensus       269 ~eVINSVVvARK  280 (535)
                      ..-+-++++.+|
T Consensus       420 t~HvE~v~ll~r  431 (433)
T 1uwv_A          420 TGHLESMVLFSR  431 (433)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCeEEEEEEEEE
Confidence            445567776654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.00  E-value=1.2e-09  Score=110.59  Aligned_cols=98  Identities=16%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..+..+|||||||+ |..++.+++ .+|+.+++++|+ +++++.|++        ..+|+|+.+|..+ +.+. . |+|+
T Consensus       199 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~p~-~-D~v~  264 (364)
T 3p9c_A          199 FEGLGTLVDVGGGV-GATVAAIAA-HYPTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDMFK-EVPS-G-DTIL  264 (364)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC-C-SEEE
T ss_pred             ccCCCEEEEeCCCC-CHHHHHHHH-HCCCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCcCC-CCCC-C-CEEE
Confidence            56789999999996 666677777 478999999999 888876653        1479999999876 4442 3 9999


Q ss_pred             eccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...+| + .++..++|+++++.|+|||+|++.+
T Consensus       265 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          265 MKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            877665 3 5667899999999999999998865

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.99  E-value=9.1e-11  Score=112.71  Aligned_cols=99  Identities=10%  Similarity=0.055  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc-CCCeEEEE-ccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI-EKRMKFLT-CDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L-s~rI~Fi~-GDA~el~~dL~~FDvV  207 (535)
                      ..+++|||||||++ ..+.+++++  ...+|+|||++++|++.|++...+.+.. ..++.+.. +|....+++...||+|
T Consensus        36 ~~g~~VLDiGcGtG-~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v  112 (232)
T 3opn_A           36 INGKTCLDIGSSTG-GFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVS  112 (232)
T ss_dssp             CTTCEEEEETCTTS-HHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred             CCCCEEEEEccCCC-HHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEE
Confidence            45789999999975 555677772  2259999999999999988865543200 12343433 2221101222235555


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+.        -..++.+++++|||||.+++-
T Consensus       113 ~~~--------l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          113 FIS--------LDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SSC--------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             hhh--------HHHHHHHHHHhccCCCEEEEE
Confidence            543        167999999999999988874

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.98  E-value=8.3e-10  Score=110.16  Aligned_cols=98  Identities=14%  Similarity=0.242  Sum_probs=77.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||||||+ |..+..+++ .+|+.+|+++|+ +.+++.|++    .    .+|+|+.+|+.+ +  ...||+|+
T Consensus       186 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~~~-~--~p~~D~v~  251 (352)
T 1fp2_A          186 FDGLESIVDVGGGT-GTTAKIICE-TFPKLKCIVFDR-PQVVENLSG----S----NNLTYVGGDMFT-S--IPNADAVL  251 (352)
T ss_dssp             HTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCC----B----TTEEEEECCTTT-C--CCCCSEEE
T ss_pred             cccCceEEEeCCCc-cHHHHHHHH-HCCCCeEEEeeC-HHHHhhccc----C----CCcEEEeccccC-C--CCCccEEE
Confidence            35679999999996 666677777 468899999999 999887764    1    259999999865 2  23499999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhccc---CeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKE---GGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKP---GGvLVvRs  240 (535)
                      +....+.  .++..++|+++++.|+|   ||+|++.+
T Consensus       252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            8766653  33444999999999999   99988865

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.98  E-value=2e-09  Score=106.90  Aligned_cols=101  Identities=12%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||.+|++.-++     ++.+++++|||+.+++.+++++...|   .+.+|..+|....+.. +.||+|++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g---~~~~~~v~D~~~~~~~-~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKD---WDFTFALQDVLCAPPA-EAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTT---CEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeecccCCCC-CCcchHHH
Confidence            578999999999887776544     78999999999999999999998888   4789999998765433 47999987


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .-.+++  ..++...+ .+...|++++++|.-.
T Consensus       175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            644443  44555555 8888999999998865

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.97  E-value=2.3e-09  Score=99.51  Aligned_cols=132  Identities=21%  Similarity=0.330  Sum_probs=87.0

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--------
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--------  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--------  200 (535)
                      +.++.+|||+||||+++| ..+|++   +++|+|||+++..           . + .+++|+++|+.+....        
T Consensus        23 ~~~g~~VLDlG~G~G~~s-~~la~~---~~~V~gvD~~~~~-----------~-~-~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWT-QVLNSL---ARKIISIDLQEME-----------E-I-AGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             SCTTCEEEEESCTTCHHH-HHHTTT---CSEEEEEESSCCC-----------C-C-TTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHH-HHHHHc---CCcEEEEeccccc-----------c-C-CCeEEEEccccCHHHHHHHHHHhh
Confidence            468899999999996666 567772   8999999999852           2 2 4799999999764310        


Q ss_pred             ---CCCcceEEecccc---CC-h-------hhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcccc-CCcEEEEEE
Q 041205          201 ---LGEYDCIILAALA---GN-E-------EEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHEL-FDFKVLSIF  265 (535)
Q Consensus       201 ---L~~FDvVfiaALV---gm-~-------edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl-~GFeil~v~  265 (535)
                         .+.||+|+.+...   |. .       +....++..+.++|||||.|++....|-.   ++.+-..+ ..|..+.+.
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~---~~~~~~~l~~~F~~v~~~  162 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM---TNDFIAIWRKNFSSYKIS  162 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH---HHHHHHHHGGGEEEEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC---HHHHHHHHHHhcCEEEEE
Confidence               0379999987432   22 1       12357888999999999999987654421   11111112 358877777


Q ss_pred             cCCCc---ceeeeEEEec
Q 041205          266 HPTND---VINSVVLLQL  280 (535)
Q Consensus       266 hP~~e---VINSVVvARK  280 (535)
                      .|...   -.-.++|++.
T Consensus       163 kP~asR~~s~E~y~v~~~  180 (191)
T 3dou_A          163 KPPASRGSSSEIYIMFFG  180 (191)
T ss_dssp             CC------CCEEEEEEEE
T ss_pred             CCCCccCCCceEEEEEee
Confidence            77542   2223777764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.95  E-value=2.5e-09  Score=105.16  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc------CCC-----cEEEEEeCCh--------------hHHHHHHHHHhhc----
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH------MKS-----THFDNIDIDE--------------TANNLARRIVSSD----  180 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~------l~G-----a~VtGIDIDp--------------eAIelAR~li~~l----  180 (535)
                      .++.+|||||+| +|++++.+++..      .|+     .+|+++|.+|              +..+.|+++++..    
T Consensus        59 ~~~~~ILEiGfG-tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           59 HPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSEEEEEESCCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCEEEEECCC-hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            466899999999 699999987643      453     5899999997              4445778887651    


Q ss_pred             ------CCc---CCCeEEEEccccccccCCC-----CcceEEeccccCC-hhh--HHHHHHHHHhhcccCeEEEEEcccc
Q 041205          181 ------DEI---EKRMKFLTCDIMEVKEKLG-----EYDCIILAALAGN-EEE--KAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       181 ------G~L---s~rI~Fi~GDA~el~~dL~-----~FDvVfiaALVgm-~ed--K~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                            + +   ..+++++.||+.+....+.     .||+||+|+...- .++  ...+|+.+++.|+|||+|++-++.|
T Consensus       138 ~g~~r~~-~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~  216 (257)
T 2qy6_A          138 PGCHRLL-LDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG  216 (257)
T ss_dssp             SEEEEEE-EC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH
T ss_pred             cchhhee-ccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence                  1 1   1468899999988655442     6999999975421 233  5789999999999999999855543


Q ss_pred             cccccCCCCcc--ccCCcEEEEEEcCCCcceeeeEEEec
Q 041205          244 ARAFLYPVVEH--ELFDFKVLSIFHPTNDVINSVVLLQL  280 (535)
Q Consensus       244 lR~fLYP~Vdp--dl~GFeil~v~hP~~eVINSVVvARK  280 (535)
                             .|-.  ...||++...--+.  -....+.++|
T Consensus       217 -------~vrr~L~~aGF~v~~~~g~~--~kr~m~~a~~  246 (257)
T 2qy6_A          217 -------FVRRGLQEAGFTMQKRKGFG--RKREMLCGVM  246 (257)
T ss_dssp             -------HHHHHHHHHTEEEEEECCST--TCCCEEEEEE
T ss_pred             -------HHHHHHHHCCCEEEeCCCCC--CCCceEEEEe
Confidence                   1111  22699875332222  1234555555

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.94  E-value=1.4e-09  Score=113.12  Aligned_cols=104  Identities=16%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCC-eEEEEcccccccc-CC-CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKR-MKFLTCDIMEVKE-KL-GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~r-I~Fi~GDA~el~~-dL-~~FD  205 (535)
                      .++.+|||++||+++++ +.+|++ ..| .+|+++|+|+++++.++++++..| ++++ ++++++|+.++.. .. ..||
T Consensus        51 ~~g~~VLDlfaGtG~~s-l~aa~~-~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da~~~l~~~~~~~fD  127 (392)
T 3axs_A           51 GRPVKVADPLSASGIRA-IRFLLE-TSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEANFFLRKEWGFGFD  127 (392)
T ss_dssp             CSCEEEEESSCTTSHHH-HHHHHH-CSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred             CCCCEEEECCCcccHHH-HHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCHHHHHHHhhCCCCc
Confidence            35799999999976555 566663 345 689999999999999999999999 7666 9999999988765 44 3599


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++. .+   ....+++.+.+.|+|||+|++-.
T Consensus       128 ~V~lDP-~g---~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          128 YVDLDP-FG---TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEECC-SS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECC-Cc---CHHHHHHHHHHHhCCCCEEEEEe
Confidence            999996 33   23469999999999999887744

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.94  E-value=5.8e-09  Score=109.03  Aligned_cols=98  Identities=23%  Similarity=0.313  Sum_probs=78.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||+|||+ |.-++.+|+   .+.+|+|||+|+++++.|+++++..| +.  ++|+++|+.+++..  .||+|++
T Consensus       289 ~~~~~VLDlgcG~-G~~sl~la~---~~~~V~gvD~s~~ai~~A~~n~~~ng-l~--v~~~~~d~~~~~~~--~fD~Vv~  359 (425)
T 2jjq_A          289 VEGEKILDMYSGV-GTFGIYLAK---RGFNVKGFDSNEFAIEMARRNVEINN-VD--AEFEVASDREVSVK--GFDTVIV  359 (425)
T ss_dssp             CCSSEEEEETCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-CC--EEEEECCTTTCCCT--TCSEEEE
T ss_pred             CCCCEEEEeeccc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEECChHHcCcc--CCCEEEE
Confidence            6789999999996 566677888   36799999999999999999999888 53  99999999876543  7999999


Q ss_pred             cccc-CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALA-GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALV-gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +--- |+   ...+++.+. .++|||++++-.
T Consensus       360 dPPr~g~---~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          360 DPPRAGL---HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCCTTCS---CHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCccch---HHHHHHHHH-hcCCCcEEEEEC
Confidence            7442 22   235666665 489999888853

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.94  E-value=3.6e-09  Score=104.85  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+.+.++++|||||||++ .-+..+++   .+.+|+|||+|+.+++.|++.+...| + .+++|+++|+.+++  ...||
T Consensus        37 ~~~~~~~~~VLDiG~G~G-~lt~~La~---~~~~v~~vDi~~~~~~~a~~~~~~~~-~-~~v~~~~~D~~~~~--~~~~D  108 (299)
T 2h1r_A           37 AAKIKSSDIVLEIGCGTG-NLTVKLLP---LAKKVITIDIDSRMISEVKKRCLYEG-Y-NNLEVYEGDAIKTV--FPKFD  108 (299)
T ss_dssp             HHCCCTTCEEEEECCTTS-TTHHHHTT---TSSEEEEECSCHHHHHHHHHHHHHTT-C-CCEEC----CCSSC--CCCCS
T ss_pred             hcCCCCcCEEEEEcCcCc-HHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECchhhCC--cccCC
Confidence            345578899999999975 45566777   36899999999999999999998877 4 68999999998754  35799


Q ss_pred             eEEecccc
Q 041205          206 CIILAALA  213 (535)
Q Consensus       206 vVfiaALV  213 (535)
                      +|+.+...
T Consensus       109 ~Vv~n~py  116 (299)
T 2h1r_A          109 VCTANIPY  116 (299)
T ss_dssp             EEEEECCG
T ss_pred             EEEEcCCc
Confidence            99986443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.93  E-value=3.6e-09  Score=106.09  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEEccCC----ChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE-EEccccccccCCC
Q 041205          128 GVAQLKKVAFVGSGP----MPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF-LTCDIMEVKEKLG  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGp----lPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F-i~GDA~el~~dL~  202 (535)
                      .+.++++|||||||.    +|.+ ..+++...++++|+|||+++.        +       .+++| +++|+.+.+.. +
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~--------v-------~~v~~~i~gD~~~~~~~-~  122 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF--------V-------SDADSTLIGDCATVHTA-N  122 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC--------B-------CSSSEEEESCGGGCCCS-S
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC--------C-------CCCEEEEECccccCCcc-C
Confidence            567899999999943    3334 555663334799999999998        1       25788 99999876543 5


Q ss_pred             CcceEEeccccCC-----------hhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEEEEEcCCC
Q 041205          203 EYDCIILAALAGN-----------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVLSIFHPTN  269 (535)
Q Consensus       203 ~FDvVfiaALVgm-----------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil~v~hP~~  269 (535)
                      .||+|+.+.....           ......+++++.++|||||.|++....+-.   +..+..  ...||..+...++..
T Consensus       123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~---~~~l~~~l~~~GF~~v~~~asr~  199 (290)
T 2xyq_A          123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW---NADLYKLMGHFSWWTAFVTNVNA  199 (290)
T ss_dssp             CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC---CHHHHHHHTTEEEEEEEEEGGGT
T ss_pred             cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC---HHHHHHHHHHcCCcEEEEEEcCC
Confidence            6999998532110           123458999999999999999986543210   111111  224787665555444


Q ss_pred             cceeeeEEEec
Q 041205          270 DVINSVVLLQL  280 (535)
Q Consensus       270 eVINSVVvARK  280 (535)
                      +-...+++.+.
T Consensus       200 ~s~e~~lv~~~  210 (290)
T 2xyq_A          200 SSSEAFLIGAN  210 (290)
T ss_dssp             TSSCEEEEEEE
T ss_pred             CchheEEecCC
Confidence            33455676664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.92  E-value=3.8e-09  Score=106.61  Aligned_cols=110  Identities=15%  Similarity=0.262  Sum_probs=86.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCc-CCCeEEEEccccccccCC-CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEI-EKRMKFLTCDIMEVKEKL-GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~L-s~rI~Fi~GDA~el~~dL-~~FD  205 (535)
                      ..|++||-||.| .|.++..+.+ |.+..+|+.||||++.++.|++.+...  |.+ ..|++++.+|+.+..... +.||
T Consensus        82 p~pk~VLIiGgG-dG~~~revlk-~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           82 GHAKHVLIIGGG-DGAMLREVTR-HKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SCCCEEEEESCT-TSHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCeEEEECCC-chHHHHHHHH-cCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            678999999999 5677777767 567789999999999999999987542  212 369999999998876544 3599


Q ss_pred             eEEeccccCC-hh---hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN-EE---EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm-~e---dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++|+.-.. ..   --.++++.+++.|+|||++++..+
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            9999965421 11   236799999999999999999754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.88  E-value=4.6e-10  Score=110.23  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-hhcCCcCCCeEEE--EccccccccCCCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-SSDDEIEKRMKFL--TCDIMEVKEKLGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-~~lG~Ls~rI~Fi--~GDA~el~~dL~~FD  205 (535)
                      +.++++||||||||+++| .++|++    ++|+|||+++ ++..+++.. .... .+.++.|+  ++|+.+++  ...||
T Consensus        72 ~~~g~~VLDlGcGtG~~s-~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWS-YYAASR----PHVMDVRAYT-LGVGGHEVPRITES-YGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             CCCCEEEEEESCTTSHHH-HHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCB-TTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCEEEEeCcCCCHHH-HHHHHc----CcEEEEECch-hhhhhhhhhhhhhc-cCCCeEEEecccCHhHCC--CCCCc
Confidence            467899999999997766 667772    7899999999 432222110 0011 11278999  99998765  35799


Q ss_pred             eEEeccc--cCC-hhhHH---HHHHHHHhhcccCe--EEEEEcc
Q 041205          206 CIILAAL--AGN-EEEKA---KILGHIRKYMKEGG--VLLVRSA  241 (535)
Q Consensus       206 vVfiaAL--Vgm-~edK~---~VL~eL~rvLKPGG--vLVvRsa  241 (535)
                      +|+.+..  .+. ..+..   .+|..+.++|+|||  .+++...
T Consensus       143 ~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          143 VIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            9998744  112 11112   48999999999999  9998543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.86  E-value=2.6e-09  Score=107.41  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeE-EEEcccccccc---CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMK-FLTCDIMEVKE---KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~-Fi~GDA~el~~---dL~~FD  205 (535)
                      .++++|||||||++++| .+++++  ...+|+|||++++|++.+.+.-.       ++. +...|+..+..   +...||
T Consensus        84 ~~g~~vLDiGcGTG~~t-~~L~~~--ga~~V~aVDvs~~mL~~a~r~~~-------rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFT-DVMLQN--GAKLVYAVDVGTNQLVWKLRQDD-------RVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             CTTCEEEEETCTTSHHH-HHHHHT--TCSEEEEECSSSSCSCHHHHTCT-------TEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             ccccEEEecCCCccHHH-HHHHhC--CCCEEEEEECCHHHHHHHHHhCc-------ccceecccCceecchhhCCCCCCC
Confidence            46789999999987777 456662  44699999999999998654211       222 22233332221   123499


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++....   .-..+|.+++++|+|||.+++-
T Consensus       154 ~v~~d~sf~---sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          154 FASIDVSFI---SLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EEEECCSSS---CGGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEEeeHh---hHHHHHHHHHHHcCcCCEEEEE
Confidence            999875543   3488999999999999998885

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.85  E-value=1.4e-09  Score=107.55  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-hhcCCcCCCeEEE--EccccccccCCCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIV-SSDDEIEKRMKFL--TCDIMEVKEKLGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li-~~lG~Ls~rI~Fi--~GDA~el~~dL~~FD  205 (535)
                      +.++++||||||||+++| .++|++    ++|+|||+++ ++..|++.. .... .+.++.|+  ++|+.+++  .+.||
T Consensus        80 ~~~g~~VLDlGcGtG~~s-~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~fD  150 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWS-YYAASQ----PNVREVKAYT-LGTSGHEKPRLVET-FGWNLITFKSKVDVTKME--PFQAD  150 (276)
T ss_dssp             CCCCEEEEEESCTTCHHH-HHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCC-TTGGGEEEECSCCGGGCC--CCCCS
T ss_pred             CCCCCEEEEeccCCCHHH-HHHHHc----CCEEEEECch-hhhhhhhchhhhhh-cCCCeEEEeccCcHhhCC--CCCcC
Confidence            467899999999997765 667772    6899999999 533332211 1111 12378999  99998765  35799


Q ss_pred             eEEecccc--CC-hhhHH---HHHHHHHhhcccCe--EEEEEc
Q 041205          206 CIILAALA--GN-EEEKA---KILGHIRKYMKEGG--VLLVRS  240 (535)
Q Consensus       206 vVfiaALV--gm-~edK~---~VL~eL~rvLKPGG--vLVvRs  240 (535)
                      +|+.+...  +. ..+..   .+|..+.++|+|||  .+++..
T Consensus       151 ~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          151 TVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99987441  11 11111   48999999999999  998854

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.84  E-value=1.3e-08  Score=101.70  Aligned_cols=109  Identities=18%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC----CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK----STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~----Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .++.+|||+|||+++++. .++++...    +.+|+|+|+|+.+++.|+.++...| +  ++.++++|+.+.. ....||
T Consensus       129 ~~~~~VlDp~cGsG~~l~-~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~~~-~~~~fD  203 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLT-TVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLANL-LVDPVD  203 (344)
T ss_dssp             CSEEEEEETTCTTSHHHH-HHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTSCC-CCCCEE
T ss_pred             CCCCEEEeCCCCccHHHH-HHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCCcc-ccCCcc
Confidence            467899999999866654 44452221    2799999999999999999998888 4  6899999986532 335799


Q ss_pred             eEEeccccCC--hhh----------------HHHHHHHHHhhcccCeEEEEEcccc
Q 041205          206 CIILAALAGN--EEE----------------KAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       206 vVfiaALVgm--~ed----------------K~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +|+..--.|.  ..+                ...++.++.+.|+|||++++-.+++
T Consensus       204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            9998744332  111                1368999999999999998877655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.83  E-value=5.2e-09  Score=104.65  Aligned_cols=97  Identities=13%  Similarity=0.211  Sum_probs=76.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++ .+|+.+++++|+ +.+++.|++    .    .+|+|+.+|..+ +.  ..||+|++
T Consensus       192 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~~~-~~--~~~D~v~~  257 (358)
T 1zg3_A          192 EGLESLVDVGGGT-GGVTKLIHE-IFPHLKCTVFDQ-PQVVGNLTG----N----ENLNFVGGDMFK-SI--PSADAVLL  257 (358)
T ss_dssp             HTCSEEEEETCTT-SHHHHHHHH-HCTTSEEEEEEC-HHHHSSCCC----C----SSEEEEECCTTT-CC--CCCSEEEE
T ss_pred             cCCCEEEEECCCc-CHHHHHHHH-HCCCCeEEEecc-HHHHhhccc----C----CCcEEEeCccCC-CC--CCceEEEE
Confidence            4678999999996 666667777 468899999999 788876653    1    359999999876 33  35999998


Q ss_pred             ccccCChhh--HHHHHHHHHhhccc---CeEEEEEc
Q 041205          210 AALAGNEEE--KAKILGHIRKYMKE---GGVLLVRS  240 (535)
Q Consensus       210 aALVgm~ed--K~~VL~eL~rvLKP---GGvLVvRs  240 (535)
                      ....+..++  ..++|+++++.|+|   ||+|++-+
T Consensus       258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            766654344  44999999999999   99888854

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.82  E-value=2.9e-09  Score=106.50  Aligned_cols=103  Identities=12%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC----ChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccCCCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI----DETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI----DpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~  203 (535)
                      +.++++||||||||+++| .++|++    ++|+|||+    ++.+++.+  ..+..| . .+++|+++ |+.+++  ...
T Consensus        80 ~~~g~~VLDlGcG~G~~s-~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~-~-~~v~~~~~~D~~~l~--~~~  148 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWS-YYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYG-W-NLVRLQSGVDVFFIP--PER  148 (305)
T ss_dssp             SCCCEEEEEETCTTSHHH-HHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTT-G-GGEEEECSCCTTTSC--CCC
T ss_pred             CCCCCEEEEEcCCCCHHH-HHHHhc----CCEEEEeccccCchhHHHHH--HhhhcC-C-CCeEEEeccccccCC--cCC
Confidence            467899999999997776 567772    58999999    55443211  122333 1 57999999 987654  357


Q ss_pred             cceEEecccc--CC-hhhHH---HHHHHHHhhcccCeEEEEEccc
Q 041205          204 YDCIILAALA--GN-EEEKA---KILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       204 FDvVfiaALV--gm-~edK~---~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      ||+|+.+...  +. ..+..   .+|..+.++|||||.|++....
T Consensus       149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~  193 (305)
T 2p41_A          149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  193 (305)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            9999987543  22 22332   5889999999999999986543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.79  E-value=5.2e-08  Score=100.90  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHh---hcCCC----------------------------------cEEEEE
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILAS---QHMKS----------------------------------THFDNI  163 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk---~~l~G----------------------------------a~VtGI  163 (535)
                      ..+....+..++.+|+|.|||++.+ +|-.|.   ...||                                  .+|+|+
T Consensus       191 a~ll~l~~~~~~~~vlDp~CGSGt~-~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv  269 (393)
T 3k0b_A          191 AALVLLTSWHPDRPFYDPVCGSGTI-PIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG  269 (393)
T ss_dssp             HHHHHHSCCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred             HHHHHHhCCCCCCeEEEcCCCCCHH-HHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence            3344445667889999999997544 344433   11222                                  579999


Q ss_pred             eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC-h---hhHHHHHHHHHhhccc--CeEEE
Q 041205          164 DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN-E---EEKAKILGHIRKYMKE--GGVLL  237 (535)
Q Consensus       164 DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm-~---edK~~VL~eL~rvLKP--GGvLV  237 (535)
                      |+|+.+++.|+++++..| +.++|+|+++|+.+++.+ ..||+|+++--.|. .   ++-..++..+.+.+++  ||.+.
T Consensus       270 Did~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~  347 (393)
T 3k0b_A          270 DIDARLIEIAKQNAVEAG-LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY  347 (393)
T ss_dssp             ESCHHHHHHHHHHHHHTT-CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred             ECCHHHHHHHHHHHHHcC-CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence            999999999999999999 778899999999887654 47999999855443 2   3445567777777766  77666


Q ss_pred             EEcc
Q 041205          238 VRSA  241 (535)
Q Consensus       238 vRsa  241 (535)
                      +-+.
T Consensus       348 iit~  351 (393)
T 3k0b_A          348 VLTS  351 (393)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.78  E-value=2.8e-09  Score=104.31  Aligned_cols=88  Identities=16%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh-------hHHHHHHHHHhhcCCcCCCeEEEE
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE-------TANNLARRIVSSDDEIEKRMKFLT  191 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp-------eAIelAR~li~~lG~Ls~rI~Fi~  191 (535)
                      +...+...+...++.+|||+|||. |.-++.+|+   .|++|+++|+|+       ++++.|+++++..| +.++|+|++
T Consensus        71 ~~~~l~~a~~~~~~~~VLDlgcG~-G~~a~~lA~---~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~  145 (258)
T 2r6z_A           71 GGELIAKAVNHTAHPTVWDATAGL-GRDSFVLAS---LGLTVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHF  145 (258)
T ss_dssp             --CHHHHHTTGGGCCCEEETTCTT-CHHHHHHHH---TTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEE
T ss_pred             chHHHHHHhCcCCcCeEEEeeCcc-CHHHHHHHH---hCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEE
Confidence            444555544556779999999995 777788988   378999999999       99999999988888 667899999


Q ss_pred             ccccccccCC----CCcceEEecc
Q 041205          192 CDIMEVKEKL----GEYDCIILAA  211 (535)
Q Consensus       192 GDA~el~~dL----~~FDvVfiaA  211 (535)
                      +|+.+....+    +.||+|+++.
T Consensus       146 ~d~~~~l~~~~~~~~~fD~V~~dP  169 (258)
T 2r6z_A          146 GNAAEQMPALVKTQGKPDIVYLDP  169 (258)
T ss_dssp             SCHHHHHHHHHHHHCCCSEEEECC
T ss_pred             CCHHHHHHhhhccCCCccEEEECC
Confidence            9998754322    5799999974

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.77  E-value=5.1e-08  Score=97.75  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ...+.+.++++|||||||++. -+..+++   .+.+|++||+|+++++.+++.+...    .+++|+++|+.++..+...
T Consensus        43 v~~l~~~~~~~VLEIG~G~G~-lT~~La~---~~~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           43 VESANLTKDDVVLEIGLGKGI-LTEELAK---NAKKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHTTCCTTCEEEEECCTTSH-HHHHHHH---HSSEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCGGGSC
T ss_pred             HHhcCCCCcCEEEEECCCchH-HHHHHHh---cCCEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCcccCC
Confidence            334456788999999999754 4556666   2689999999999999999998732    4799999999876655456


Q ss_pred             cceEEec
Q 041205          204 YDCIILA  210 (535)
Q Consensus       204 FDvVfia  210 (535)
                      ||+|+..
T Consensus       115 fD~Iv~N  121 (295)
T 3gru_A          115 FNKVVAN  121 (295)
T ss_dssp             CSEEEEE
T ss_pred             ccEEEEe
Confidence            9999965

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.74  E-value=1e-08  Score=107.61  Aligned_cols=75  Identities=23%  Similarity=0.146  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccC--CCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEK--LGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~d--L~~FD  205 (535)
                      .++.+|||+||| .|.-++.+|+   .+.+|++||+|+++++.|+++++..  | + ++|+|+++|+.+....  .+.||
T Consensus        92 ~~g~~VLDLgcG-~G~~al~LA~---~g~~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGG-LGIDFIALMS---KASQGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCS-SSHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred             CCCCEEEEeCCC-chHHHHHHHh---cCCEEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcHHHhhhhccCCCce
Confidence            358999999999 5777788988   4789999999999999999999998  8 5 7899999999875332  24799


Q ss_pred             eEEec
Q 041205          206 CIILA  210 (535)
Q Consensus       206 vVfia  210 (535)
                      +||++
T Consensus       166 vV~lD  170 (410)
T 3ll7_A          166 YIYVD  170 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99997

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.73  E-value=1.2e-07  Score=98.09  Aligned_cols=118  Identities=13%  Similarity=0.098  Sum_probs=87.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHh---hcCCC----------------------------------cEEEEE
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILAS---QHMKS----------------------------------THFDNI  163 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk---~~l~G----------------------------------a~VtGI  163 (535)
                      ..+....+..++..|+|.|||++.+ +|-.|.   ...||                                  .+|+|+
T Consensus       184 aall~l~~~~~~~~llDp~CGSGt~-lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv  262 (384)
T 3ldg_A          184 AAIILLSNWFPDKPFVDPTCGSGTF-CIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF  262 (384)
T ss_dssp             HHHHHHTTCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred             HHHHHHhCCCCCCeEEEeCCcCCHH-HHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence            3344445667889999999997544 343333   11222                                  579999


Q ss_pred             eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC----hhhHHHHHHHHHhhccc--CeEEE
Q 041205          164 DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN----EEEKAKILGHIRKYMKE--GGVLL  237 (535)
Q Consensus       164 DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm----~edK~~VL~eL~rvLKP--GGvLV  237 (535)
                      |+|+.|++.|+++++..| +.++|+|+++|+.+++.. ..||+|+++--.|.    .++...++..+.+.|++  |+.+.
T Consensus       263 Did~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~  340 (384)
T 3ldg_A          263 DFDGRMVEIARKNAREVG-LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF  340 (384)
T ss_dssp             ESCHHHHHHHHHHHHHTT-CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             ECCHHHHHHHHHHHHHcC-CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence            999999999999999999 788899999999887654 47999999744432    35667788888888777  77666


Q ss_pred             EEcc
Q 041205          238 VRSA  241 (535)
Q Consensus       238 vRsa  241 (535)
                      +-++
T Consensus       341 iit~  344 (384)
T 3ldg_A          341 ILTN  344 (384)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            6554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.72  E-value=8.1e-08  Score=98.99  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhc---CC----------------------------------CcEEEEEe
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQH---MK----------------------------------STHFDNID  164 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~---l~----------------------------------Ga~VtGID  164 (535)
                      .+....+..++.+|||.|||++.+ ++-.|...   .|                                  ..+|+|+|
T Consensus       186 ~ll~~~~~~~~~~vlDp~CGSGt~-lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  264 (385)
T 3ldu_A          186 GLIYLTPWKAGRVLVDPMCGSGTI-LIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYD  264 (385)
T ss_dssp             HHHHTSCCCTTSCEEETTCTTCHH-HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEE
T ss_pred             HHHHhhCCCCCCeEEEcCCCCCHH-HHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence            334445567889999999997543 44444421   12                                  26899999


Q ss_pred             CChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccccCC----hhhHHHHHHHHHhhccc--CeEEEE
Q 041205          165 IDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALAGN----EEEKAKILGHIRKYMKE--GGVLLV  238 (535)
Q Consensus       165 IDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm----~edK~~VL~eL~rvLKP--GGvLVv  238 (535)
                      +|+.+++.|++++...| +.++|+|+++|+.+++.+ ..||+|+++--.|.    .++...++..+.+.|++  |+.+.+
T Consensus       265 id~~ai~~Ar~Na~~~g-l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          265 IDEESIDIARENAEIAG-VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             SCHHHHHHHHHHHHHHT-CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             CCHHHHHHHHHHHHHcC-CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            99999999999999999 777899999999887654 47999999755553    24456677777777776  766655


Q ss_pred             Ecc
Q 041205          239 RSA  241 (535)
Q Consensus       239 Rsa  241 (535)
                      -++
T Consensus       343 it~  345 (385)
T 3ldu_A          343 ITS  345 (385)
T ss_dssp             EES
T ss_pred             EEC
Confidence            443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.72  E-value=2.9e-08  Score=99.72  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-----CC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-----LG  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-----L~  202 (535)
                      .+.++.+|||+|||+++.| +.++++ .++++|+|||+|+++++.|+++++..|   .+++|+++|..+++..     ..
T Consensus        23 ~~~~g~~vLD~g~G~G~~s-~~la~~-~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHS-RAILEH-CPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHH-HHHHHH-CTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEEeCCcCHHH-HHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhcCCC
Confidence            4467899999999976666 556663 568999999999999999999998877   5899999998876421     14


Q ss_pred             CcceEEecccc
Q 041205          203 EYDCIILAALA  213 (535)
Q Consensus       203 ~FDvVfiaALV  213 (535)
                      .||.|+++..+
T Consensus        98 ~~D~Vl~D~gv  108 (301)
T 1m6y_A           98 KVDGILMDLGV  108 (301)
T ss_dssp             CEEEEEEECSC
T ss_pred             CCCEEEEcCcc
Confidence            69999987555

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.71  E-value=3e-08  Score=100.04  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||+|||++++ ++.++++..++.+|+|+|+|+.+++.|           .+++++++|..+... .+.||+|+.
T Consensus        38 ~~~~~vLD~gcGtG~~-~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~-~~~fD~Ii~  104 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPF-LRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP-GEAFDLILG  104 (421)
T ss_dssp             CTTCEEEEETCTTCHH-HHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCEEEECCCCChHH-HHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc-cCCCCEEEE
Confidence            4577999999997544 466666433678999999999998766           368999999976543 257999998


Q ss_pred             ccccC-----------C-hhh-----------------HHHHHHHHHhhcccCeEEEEEcccc
Q 041205          210 AALAG-----------N-EEE-----------------KAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       210 aALVg-----------m-~ed-----------------K~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      .--.+           + .+.                 ...+++++.+.|+|||++++-.+.+
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            31110           1 111                 2267999999999999988876543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.64  E-value=2.4e-07  Score=88.99  Aligned_cols=70  Identities=17%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      +...+++.++.+|||||||++.+ +..++++   +.+|+|||+|+++++.+++.+...    .+++++++|+.+++..
T Consensus        22 i~~~~~~~~~~~VLDiG~G~G~l-t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~~   91 (244)
T 1qam_A           22 IMTNIRLNEHDNIFEIGSGKGHF-TLELVQR---CNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFP   91 (244)
T ss_dssp             HHTTCCCCTTCEEEEECCTTSHH-HHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCC
T ss_pred             HHHhCCCCCCCEEEEEeCCchHH-HHHHHHc---CCeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCcc
Confidence            33344557889999999997554 4566662   489999999999999999987642    4799999999887654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.62  E-value=2e-09  Score=102.65  Aligned_cols=75  Identities=23%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEY  204 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~F  204 (535)
                      .+.+.++.+|||||||++.+| ..++++   +++|+|||+|+++++.|++.+.  +  ..+++|+++|+.+++... +.|
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~-~~l~~~---~~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLT-TKLAKI---SKQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCS-HHHHHH---SSEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTCCCSSEE
T ss_pred             hcCCCCCCEEEEEeCCCCHHH-HHHHHh---CCeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCcccCCCc
Confidence            345578899999999976555 566662   4899999999999999988775  2  258999999998876543 457


Q ss_pred             ceEEe
Q 041205          205 DCIIL  209 (535)
Q Consensus       205 DvVfi  209 (535)
                       .|+.
T Consensus        96 -~vv~   99 (245)
T 1yub_A           96 -KIVG   99 (245)
T ss_dssp             -EEEE
T ss_pred             -EEEE
Confidence             4443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.60  E-value=2e-08  Score=99.03  Aligned_cols=110  Identities=10%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             HHHHHHhhCCCCC--CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC------C-cCCCeEEE
Q 041205          120 YGALIENTGVAQL--KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD------E-IEKRMKFL  190 (535)
Q Consensus       120 ~~lL~~~~~l~~p--kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG------~-Ls~rI~Fi  190 (535)
                      .+.+...+++.++  .+|||+||| .|.-++++|.+   |++|++||+++.+++++++.+++++      . +..+|+|+
T Consensus        75 ~e~l~~al~l~~g~~~~VLDl~~G-~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~  150 (258)
T 2oyr_A           75 GEAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (258)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCT-TCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred             HHHHHHHhcccCCCCCEEEEcCCc-CCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence            3555555666777  999999999 68888999983   7899999999999888888776442      0 12579999


Q ss_pred             EccccccccCC-CCcceEEeccccCChhhHHHHHHHHHhhcccCe
Q 041205          191 TCDIMEVKEKL-GEYDCIILAALAGNEEEKAKILGHIRKYMKEGG  234 (535)
Q Consensus       191 ~GDA~el~~dL-~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGG  234 (535)
                      ++|+.+++... +.||+||++-.... ..+...+....+.+++.+
T Consensus       151 ~~D~~~~L~~~~~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          151 HASSLTALTDITPRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             ESCHHHHSTTCSSCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred             ECCHHHHHHhCcccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence            99998865433 35999999865532 223344444445555533

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.59  E-value=5.9e-08  Score=100.89  Aligned_cols=115  Identities=16%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhc------------CCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQH------------MKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTC  192 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~------------l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~G  192 (535)
                      .+...++.+|+|.|||++++. +.++++.            ..+.+|+|+|+|+.++++|+.++...| +.. ++.+++|
T Consensus       166 ~l~~~~~~~VlDpacGsG~fl-~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~~~~~i~~g  243 (445)
T 2okc_A          166 CINPQMGETVCDPACGTGGFL-LTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGTDRSPIVCE  243 (445)
T ss_dssp             HHCCCTTCCEEETTCTTCHHH-HHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCSSCCSEEEC
T ss_pred             HhCCCCCCEEeccCCCcchHH-HHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCcCCCCEeeC
Confidence            334466789999999987765 4444421            135789999999999999999988777 542 6889999


Q ss_pred             cccccccCCCCcceEEeccccCC--hhh---------------HHHHHHHHHhhcccCeEEEEEcccc
Q 041205          193 DIMEVKEKLGEYDCIILAALAGN--EEE---------------KAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       193 DA~el~~dL~~FDvVfiaALVgm--~ed---------------K~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      |....+.. ..||+|+..--.+.  ..+               ...++.++.+.|+|||++++-.++|
T Consensus       244 D~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          244 DSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             CTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            98764432 37999997633321  111               1478999999999999998876654

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.59  E-value=1.3e-07  Score=98.73  Aligned_cols=108  Identities=19%  Similarity=0.150  Sum_probs=81.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-----C-cCCCeEEEEcccccccc----
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-----E-IEKRMKFLTCDIMEVKE----  199 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-----~-Ls~rI~Fi~GDA~el~~----  199 (535)
                      .++++||-||.| .|.++..+.+ | +..+|+.||||++.++.|++.+....     + -..+++++.+|+.+...    
T Consensus       204 ~~pkrVLIIGgG-dG~~~revlk-h-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGG-DGGILCEIVK-L-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECT-TCHHHHHHHT-T-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCC-cHHHHHHHHh-c-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            568999999999 5667666666 3 45899999999999999999865321     0 12579999999987653    


Q ss_pred             CCCCcceEEecccc--------CC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALA--------GN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALV--------gm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+.||+|++|..-        +.  ..-..++++.+++.|+|||++++..
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            23469999998532        11  1224678999999999999999864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.59  E-value=1.4e-07  Score=92.34  Aligned_cols=74  Identities=9%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--  201 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--  201 (535)
                      ...+.+.++++|||||||++. -+..+++   .+++|++||+|+++++.+++.+.. .   .++++++||+.+++.+.  
T Consensus        22 v~~~~~~~~~~VLEIG~G~G~-lt~~La~---~~~~V~avEid~~~~~~~~~~~~~-~---~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           22 VSAIHPQKTDTLVEIGPGRGA-LTDYLLT---ECDNLALVEIDRDLVAFLQKKYNQ-Q---KNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             HHHHCCCTTCEEEEECCTTTT-THHHHTT---TSSEEEEEECCHHHHHHHHHHHTT-C---TTEEEEESCTTTCCGGGSC
T ss_pred             HHhcCCCCcCEEEEEcccccH-HHHHHHH---hCCEEEEEECCHHHHHHHHHHHhh-C---CCcEEEEcchHhCCHHHhc
Confidence            334456789999999999754 4566666   358999999999999999998876 2   48999999998765421  


Q ss_pred             --CCcc
Q 041205          202 --GEYD  205 (535)
Q Consensus       202 --~~FD  205 (535)
                        +.||
T Consensus        94 ~~~~~~   99 (255)
T 3tqs_A           94 TDKPLR   99 (255)
T ss_dssp             CSSCEE
T ss_pred             cCCCeE
Confidence              3477

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.51  E-value=5.8e-07  Score=89.04  Aligned_cols=76  Identities=16%  Similarity=0.069  Sum_probs=58.7

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CC
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GE  203 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~  203 (535)
                      ..+.+.++ +|||||||++.+| ..+++   .+++|++||+|+++++.+++.+.  +   .++++++||+.++..+. ..
T Consensus        41 ~~~~~~~~-~VLEIG~G~G~lt-~~L~~---~~~~V~avEid~~~~~~l~~~~~--~---~~v~vi~~D~l~~~~~~~~~  110 (271)
T 3fut_A           41 EAARPFTG-PVFEVGPGLGALT-RALLE---AGAEVTAIEKDLRLRPVLEETLS--G---LPVRLVFQDALLYPWEEVPQ  110 (271)
T ss_dssp             HHHCCCCS-CEEEECCTTSHHH-HHHHH---TTCCEEEEESCGGGHHHHHHHTT--T---SSEEEEESCGGGSCGGGSCT
T ss_pred             HhcCCCCC-eEEEEeCchHHHH-HHHHH---cCCEEEEEECCHHHHHHHHHhcC--C---CCEEEEECChhhCChhhccC
Confidence            33455778 9999999976555 55666   35899999999999999999875  2   47999999998765542 35


Q ss_pred             cceEEec
Q 041205          204 YDCIILA  210 (535)
Q Consensus       204 FDvVfia  210 (535)
                      ||.|+..
T Consensus       111 ~~~iv~N  117 (271)
T 3fut_A          111 GSLLVAN  117 (271)
T ss_dssp             TEEEEEE
T ss_pred             ccEEEec
Confidence            7887754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.40  E-value=9.2e-07  Score=97.52  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=77.8

Q ss_pred             CCCEEEEEccCCChhhHHHHH--hhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILA--SQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LA--k~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+..|++||||.+|++...+.  ++.....+|.+||.++ +...|+++++..| ++++|+++.||+.++..+ ..+|+|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~-~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE-WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT-TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc-CCCeEEEEeCcceeccCC-cccCEEE
Confidence            456899999999999644442  2112224789999997 5678999999999 899999999999886543 5699999


Q ss_pred             eccccC---ChhhHHHHHHHHHhhcccCeEEE
Q 041205          209 LAALAG---NEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       209 iaALVg---m~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      .. .+|   .-|--..++....|.|||||+++
T Consensus       434 SE-wMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SE-LLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CC-CCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EE-cCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            65 222   13444578888899999999875

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.38  E-value=5.1e-07  Score=88.18  Aligned_cols=65  Identities=12%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +.+.++++|||||||++.+|.  +++  ....+|++||+|+++++.+++.+...    .++++++||+.+++.
T Consensus        17 ~~~~~~~~VLEIG~G~G~lt~--l~~--~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A           17 INPQKGQAMVEIGPGLAALTE--PVG--ERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHH--HHH--TTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH
T ss_pred             cCCCCcCEEEEECCCCcHHHH--hhh--CCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH
Confidence            455788999999999877777  554  22223999999999999999876542    379999999987543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.36  E-value=9.2e-07  Score=91.24  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC----cCCCeEEEEccccccccCC-
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE----IEKRMKFLTCDIMEVKEKL-  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~----Ls~rI~Fi~GDA~el~~dL-  201 (535)
                      +...++++|||+-+||+|=|+.+ |. ...++.|+++|+|+.++...+++++++|.    ...++.+.+.|+..+.... 
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~l-a~-~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~  221 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLAL-LQ-TGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG  221 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHH-HH-TTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST
T ss_pred             hCCCCCCEEEEecCCccHHHHHH-HH-hcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc
Confidence            35689999999999999988654 45 35677899999999999999999998872    1257899999998765433 


Q ss_pred             CCcceEEecccc-----CC-h--h----------------hHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALA-----GN-E--E----------------EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALV-----gm-~--e----------------dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||.|++|+-=     |+ .  +                --.++|.+..+.+||||+||+-+
T Consensus       222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            469999998541     11 0  0                01468899999999999999865

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.33  E-value=1.6e-06  Score=96.77  Aligned_cols=105  Identities=12%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCEEEEEccCCChhhHH--HHHhhcC---------CCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          131 QLKKVAFVGSGPMPLTSI--ILASQHM---------KSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI--~LAk~~l---------~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +++.||+||||++|++..  ..++..-         ...+|++||.++.++...+.... .| ++++|+++.||+.++..
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-TTTCSEEEESCGGGHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-CCCeEEEEeCchhhccc
Confidence            356899999999999843  3332111         23599999999988866666554 57 78899999999998765


Q ss_pred             C-----CCCcceEEeccccCC---hhhHHHHHHHHHhhcccCeEEEE
Q 041205          200 K-----LGEYDCIILAALAGN---EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       200 d-----L~~FDvVfiaALVgm---~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +     ....|+|+.. +.|.   .+--.++|..+.+.|+|||+++=
T Consensus       487 p~~~~~~ekVDIIVSE-lmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSE-LLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHHHTTCCCCSEEEEC-CCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             ccccCCCCcccEEEEe-ccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            2     4579999976 3342   34456799999999999998753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.32  E-value=2.1e-06  Score=95.09  Aligned_cols=119  Identities=22%  Similarity=0.177  Sum_probs=83.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhh---cC--------------------------------------CCcE
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQ---HM--------------------------------------KSTH  159 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~---~l--------------------------------------~Ga~  159 (535)
                      ..+....+..++.+|+|.+||++++ +|-.|..   ..                                      +..+
T Consensus       180 a~ll~~~~~~~~~~llDP~CGSGt~-lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          180 AAIVMRSGWQPGTPLLDPMCGSGTL-LIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHTTCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHhhCCCCCCeEEecCCCCcHH-HHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            3334444557789999999997544 3433331   11                                      2358


Q ss_pred             EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceEEeccccCC----hhhHHHHHHHH---Hhhc
Q 041205          160 FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCIILAALAGN----EEEKAKILGHI---RKYM  230 (535)
Q Consensus       160 VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvVfiaALVgm----~edK~~VL~eL---~rvL  230 (535)
                      |+|+|+|+.+++.|+.++...| +.+.|+|.++|+.++..+.  +.||+|+..--.|.    .++-..++..+   .+.+
T Consensus       259 i~G~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~  337 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAG-IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ  337 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTT-CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999 7888999999998864443  27999998744442    22334444444   4455


Q ss_pred             ccCeEEEEEcc
Q 041205          231 KEGGVLLVRSA  241 (535)
Q Consensus       231 KPGGvLVvRsa  241 (535)
                      .|||.+.+-++
T Consensus       338 ~~g~~~~ilt~  348 (703)
T 3v97_A          338 FGGWNLSLFSA  348 (703)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCeEEEEeC
Confidence            58998877664

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.30  E-value=3.3e-06  Score=82.05  Aligned_cols=106  Identities=14%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ...+.+.++++|||||||+ |.-+..++++  +..+|+|||+|+.+++.+++.    +  ..+++++++|+.+++.+...
T Consensus        24 v~~~~~~~~~~VLDiG~G~-G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~--~~~v~~i~~D~~~~~~~~~~   94 (249)
T 3ftd_A           24 AEELNIEEGNTVVEVGGGT-GNLTKVLLQH--PLKKLYVIELDREMVENLKSI----G--DERLEVINEDASKFPFCSLG   94 (249)
T ss_dssp             HHHTTCCTTCEEEEEESCH-HHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----C--CTTEEEECSCTTTCCGGGSC
T ss_pred             HHhcCCCCcCEEEEEcCch-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----c--CCCeEEEEcchhhCChhHcc
Confidence            3344557889999999996 5555677672  358999999999999999877    2  15799999999876543211


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhc--ccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYM--KEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvL--KPGGvLVvRs  240 (535)
                      .++++++.+- . .--..++.++.+..  -+++++++-.
T Consensus        95 ~~~~vv~NlP-y-~i~~~il~~ll~~~~~~~~~~~m~Qk  131 (249)
T 3ftd_A           95 KELKVVGNLP-Y-NVASLIIENTVYNKDCVPLAVFMVQK  131 (249)
T ss_dssp             SSEEEEEECC-T-TTHHHHHHHHHHTGGGCSEEEEEEEH
T ss_pred             CCcEEEEECc-h-hccHHHHHHHHhcCCCCceEEEEEeH
Confidence            1334443332 1 11234455554432  3455666643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.25  E-value=2e-06  Score=85.30  Aligned_cols=70  Identities=9%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +...+.+.++.+|||||||++.+|. .++++... +++|+|||+|+++++.+++..   .   .+++|+++|+.+++.
T Consensus        34 iv~~~~~~~~~~VLEIG~G~G~lt~-~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           34 IVAAIRPERGERMVEIGPGLGALTG-PVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHHHCCCTTCEEEEECCTTSTTHH-HHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCG
T ss_pred             HHHhcCCCCcCEEEEEccccHHHHH-HHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCCh
Confidence            3334456789999999999866664 55553222 345999999999999999983   3   479999999987654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.21  E-value=2.1e-06  Score=92.27  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhc---C--------------CCcEEEEEeCChhHHHHHHHHHhhcCCcCC--
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQH---M--------------KSTHFDNIDIDETANNLARRIVSSDDEIEK--  185 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~---l--------------~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~--  185 (535)
                      ..+...++.+|+|.|||++++... ++++.   .              ....|+|+|+|+.++++|+.++.-.| +..  
T Consensus       163 ~~l~p~~~~~VlDPaCGSG~fLi~-a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-i~~~~  240 (541)
T 2ar0_A          163 HLLKPQPREVVQDPAAGTAGFLIE-ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL  240 (541)
T ss_dssp             HHHCCCTTCCEEETTCTTTHHHHH-HHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBG
T ss_pred             HHhccCCCCeEecCCcccchHHHH-HHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-CCccc
Confidence            334446778999999998776543 33321   1              12479999999999999999887777 443  


Q ss_pred             --CeEEEEccccccc-cCCCCcceEEeccccCCh--------------hhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          186 --RMKFLTCDIMEVK-EKLGEYDCIILAALAGNE--------------EEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       186 --rI~Fi~GDA~el~-~dL~~FDvVfiaALVgm~--------------edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                        ++.++++|....+ .....||+|+..--.+..              .....++.++.+.|+|||++++-.++|
T Consensus       241 ~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          241 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence              2789999987543 234679999975333210              113479999999999999988877655

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.11  E-value=4.7e-06  Score=77.43  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      .++.||+|||||+++--|..||++  .|..|+++|+++.+++                 |++.|+.+-..++ .+||+|+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEE
Confidence            557899999999866689999863  6889999999999876                 7788886533222 4799998


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....-   ++-...+-.+++  +-|+-++++.
T Consensus        95 sirPP---~El~~~i~~lA~--~v~adliI~p  121 (153)
T 2k4m_A           95 SIRPP---AEIHSSLMRVAD--AVGARLIIKP  121 (153)
T ss_dssp             EESCC---TTTHHHHHHHHH--HHTCEEEEEC
T ss_pred             EcCCC---HHHHHHHHHHHH--HcCCCEEEEc
Confidence            76444   566677777776  4467777765

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.88  E-value=0.00017  Score=71.60  Aligned_cols=138  Identities=12%  Similarity=0.059  Sum_probs=95.0

Q ss_pred             CccccccCccchhhHHhHHHH--HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhh------cCCCcEEEEEe-----C
Q 041205           99 PLNDLNRFPYYENYVKLAKLE--YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQ------HMKSTHFDNID-----I  165 (535)
Q Consensus        99 pl~~L~~FpYy~NYv~LirlE--~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~------~l~Ga~VtGID-----I  165 (535)
                      +.+.|+.|+.|..-..+++.-  +.++..+.  .-+-.|+|+|+- -|.|++.+|..      +.++.+|.++|     -
T Consensus        37 ~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~--~vpG~ivE~GV~-rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P  113 (257)
T 3tos_A           37 TEELVNNLPLFLRRHQMTDLLSMDALYRQVL--DVPGVIMEFGVR-FGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFP  113 (257)
T ss_dssp             GGGGGGCGGGGCCHHHHHHHHHHHHHHHHTT--TSCSEEEEECCT-TCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCC
T ss_pred             hHHHHHhHHhhhhHHHHHHHHHHHHHHHHhh--CCCCeEEEEecc-cCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCC
Confidence            345578888877766666543  24433333  346799999997 57888887651      12568899999     2


Q ss_pred             Ch----------------------hHHHH---HHHHHhhcCCcCCCeEEEEccccccccC------CCCcceEEeccccC
Q 041205          166 DE----------------------TANNL---ARRIVSSDDEIEKRMKFLTCDIMEVKEK------LGEYDCIILAALAG  214 (535)
Q Consensus       166 Dp----------------------eAIel---AR~li~~lG~Ls~rI~Fi~GDA~el~~d------L~~FDvVfiaALVg  214 (535)
                      .+                      +.++.   .+.+.++.|.+.++|+++.|++.+.+..      ...||+||+|+.. 
T Consensus       114 ~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-  192 (257)
T 3tos_A          114 DVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-  192 (257)
T ss_dssp             SCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-
T ss_pred             CCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-
Confidence            21                      11121   1222345773358999999999876543      2359999999865 


Q ss_pred             ChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          215 NEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       215 m~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       -+....+++.+.++|+|||+|++++.
T Consensus       193 -Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          193 -YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             -cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence             25677889999999999999999985

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.79  E-value=1.9e-05  Score=85.26  Aligned_cols=108  Identities=11%  Similarity=0.000  Sum_probs=76.9

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCC---------------CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMK---------------STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~---------------Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .+|+|.+||++++..-. ++ ++.               ...|+|+|+|+.++.+|+.++.-.| +..+|.+.+||....
T Consensus       246 ~~VlDPaCGSG~fLi~a-~~-~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~i~i~~gDtL~~  322 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSS-DK-FIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-IDFNFGKKNADSFLD  322 (544)
T ss_dssp             EEEEESSCTTCHHHHHH-HH-HHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-CCCBCCSSSCCTTTS
T ss_pred             CeEeCcccCcCcHHHHH-HH-HHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-CCcccceeccchhcC
Confidence            49999999987664332 22 111               4689999999999999999988888 666666689998654


Q ss_pred             cc-CCCCcceEEeccccCC----h-------------------------hhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          198 KE-KLGEYDCIILAALAGN----E-------------------------EEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       198 ~~-dL~~FDvVfiaALVgm----~-------------------------edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +. ....||+|+..--.+.    .                         ..-..++.++.+.|+|||++++-.++|
T Consensus       323 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          323 DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            32 2346999997422211    0                         001268999999999999988776655

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.75  E-value=5.9e-05  Score=76.18  Aligned_cols=76  Identities=14%  Similarity=0.060  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-----CC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-----LG  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-----L~  202 (535)
                      .+.++..++|.+||.+|.|..++ ++   +++|+|+|+|+++++.|++ +..     ++++|+++|..++...     .+
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il-~~---~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~~~g~~   88 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGIL-ER---GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLAALGVE   88 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHH-HT---TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHH-HC---CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHHHcCCC
Confidence            34778999999999888886555 52   7899999999999999998 543     4899999998876431     24


Q ss_pred             CcceEEecccc
Q 041205          203 EYDCIILAALA  213 (535)
Q Consensus       203 ~FDvVfiaALV  213 (535)
                      .||.|+++-.+
T Consensus        89 ~vDgIL~DLGv   99 (285)
T 1wg8_A           89 RVDGILADLGV   99 (285)
T ss_dssp             CEEEEEEECSC
T ss_pred             CcCEEEeCCcc
Confidence            58888887555

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.74  E-value=0.00016  Score=78.19  Aligned_cols=112  Identities=13%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhc--CCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEcccccc--c-cCCCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQH--MKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEV--K-EKLGE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~--l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el--~-~dL~~  203 (535)
                      .++.+|+|.+||++++..- ++++.  .....|+|+|+|+.++.+|+.++.-.| +. .++.+.++|....  + .....
T Consensus       220 ~~~~~VlDPaCGSG~fLi~-a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~gDtL~~d~p~~~~~~  297 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLN-AKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNADTLDEDWPTQEPTN  297 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGG-HHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCTTTSCSCCSSCCC
T ss_pred             CCCCEEeecccchhHHHHH-HHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEecceeccccccccccc
Confidence            4678999999998776543 33422  236799999999999999999987777 54 4789999998754  2 23356


Q ss_pred             cceEEeccccCC---h-----h---------------hHHHHHHHHHhhcc-cCeEEEEEcccc
Q 041205          204 YDCIILAALAGN---E-----E---------------EKAKILGHIRKYMK-EGGVLLVRSAKG  243 (535)
Q Consensus       204 FDvVfiaALVgm---~-----e---------------dK~~VL~eL~rvLK-PGGvLVvRsa~G  243 (535)
                      ||+|+..--.+.   .     .               .-..++.++.+.|+ |||++++-.++|
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            999995411110   0     0               01248999999999 999998877665

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.69  E-value=6.4e-05  Score=78.45  Aligned_cols=88  Identities=14%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++++|+|+||+|+|.|-.+ ++   .|++|++||+.+=    +-.+ ...    .+|+|+.+|+.+.....+.||+|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l-~~---rg~~V~aVD~~~l----~~~l-~~~----~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQL-VK---RNMWVYSVDNGPM----AQSL-MDT----GQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHH-HH---TTCEEEEECSSCC----CHHH-HTT----TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHH-HH---CCCEEEEEEhhhc----Chhh-ccC----CCeEEEeCccccccCCCCCcCEEE
Confidence            478999999999999999764 45   4789999997641    1111 122    479999999987765556799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccC
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEG  233 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPG  233 (535)
                      .|-.    +...+++.-+.+.+..|
T Consensus       276 sDm~----~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          276 CDMV----EKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             ECCS----SCHHHHHHHHHHHHHTT
T ss_pred             EcCC----CChHHhHHHHHHHHhcc
Confidence            9733    46677877777777766

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.60  E-value=6.4e-05  Score=74.68  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDv  206 (535)
                      .+ ++++||-+|+|++|..++.+|+..+||++|+++|.+++..+.+++    +| ...-+.... .|..+.......||+
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lG-a~~vi~~~~~~~~~~~~~~g~g~D~  241 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LG-ADYVSEMKDAESLINKLTDGLGASI  241 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HT-CSEEECHHHHHHHHHHHHTTCCEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hC-CCEEeccccchHHHHHhhcCCCccE
Confidence            56 899999999999999999999964458999999999999888765    45 211111101 111111112236999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-....      ...++...+.|+|||+++.-.
T Consensus       242 vid~~g~------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          242 AIDLVGT------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC------hHHHHHHHHHhhcCCEEEEeC
Confidence            9975432      346788889999999998743

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.57  E-value=8.6e-05  Score=73.48  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=71.2

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCCCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~~FD  205 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....|..+ +....+.+|
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARA--MGLRVAAVDIDDAKLNLARR----LG-AEVAVNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TT-CSEEEETTTSCHHHHHHHHHSSEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHH----cC-CCEEEeCCCcCHHHHHHHhCCCCC
Confidence            456899999999999999999999994  58899999999999887765    56 21111111111111 111113699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||..+..      ...++...+.|+|||++++-.
T Consensus       235 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          235 GVLVTAVS------PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEEeCCC------HHHHHHHHHHhccCCEEEEeC
Confidence            99876433      457888899999999998753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.55  E-value=6e-05  Score=75.60  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc-CCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE-KLG  202 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~-dL~  202 (535)
                      ...+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++    | ...-+.....|..+ +.. ..+
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~~Vi~~~~~~~~~~~a~~l----G-a~~vi~~~~~~~~~~~~~~~~g  257 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKV--CGASIIIAVDIVESRLELAKQL----G-ATHVINSKTQDPVAAIKEITDG  257 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHHH----T-CSEEEETTTSCHHHHHHHHTTS
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHc----C-CCEEecCCccCHHHHHHHhcCC
Confidence            3467889999999999999999999994  477 799999999998888654    5 21111111112111 111 112


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+||-....      ...++...+.|+|||++++-.
T Consensus       258 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          258 GVNFALESTGS------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             CEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence            69999865332      356888899999999998743

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.51  E-value=0.00012  Score=73.16  Aligned_cols=97  Identities=20%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc------cc-ccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD------IM-EVK  198 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD------A~-el~  198 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| . +  .++..+      .. .+.
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~--~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKE----IG-A-D--LVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TT-C-S--EEEECSSCCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-C-C--EEEcCcccccchHHHHHH
Confidence            456889999999999999999999994  577 99999999998887764    56 2 2  122211      11 111


Q ss_pred             --cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 --EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 --~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .. .+||+||-....      ...+....+.|+|||++++-.
T Consensus       237 ~~~~-~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          237 GQLG-CKPEVTIECTGA------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHT-SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhC-CCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEe
Confidence              12 469999975433      346778889999999998753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.50  E-value=0.0001  Score=74.38  Aligned_cols=102  Identities=21%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC----
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK----  200 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d----  200 (535)
                      ...+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.+...|..+....    
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a~~vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARL--AGATTVILSTRQATKRRLAEE----VG-ATATVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHH----HT-CSEEECTTSSCHHHHHHSTTSS
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CCEEECCCCcCHHHHHHhhhhc
Confidence            3467899999999999999999999994  577 99999999999888776    45 211111112222221111    


Q ss_pred             -CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 -LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 -L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       .++||+||-....      ...++...+.|++||++++-.
T Consensus       250 ~~gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          250 VPGGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             STTCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             cCCCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence             1369999975332      456888899999999998854

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.47  E-value=0.00014  Score=73.25  Aligned_cols=141  Identities=13%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.++.+|||+||||+|.|-.+..+  .+-..|+|+|+..+.....+. ....|   .++.+..+++.........||+|+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~--~~~~~v~g~dVGvDl~~~pi~-~~~~g---~~ii~~~~~~dv~~l~~~~~DlVl  145 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQ--KEVSGVKGFTLGRDGHEKPMN-VQSLG---WNIITFKDKTDIHRLEPVKCDTLL  145 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTCCCCCC-CCBTT---GGGEEEECSCCTTTSCCCCCSEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHh--cCCCcceeEEEeccCcccccc-cCcCC---CCeEEEeccceehhcCCCCccEEE
Confidence            478899999999999998655433  234578888887543100000 01112   144445555422222335699999


Q ss_pred             ecccc--CC--hhhHH--HHHHHHHhhcccC-eEEEEEccc--ccccccCCCCcc---cc-CCcEEEEEEcCCC--ccee
Q 041205          209 LAALA--GN--EEEKA--KILGHIRKYMKEG-GVLLVRSAK--GARAFLYPVVEH---EL-FDFKVLSIFHPTN--DVIN  273 (535)
Q Consensus       209 iaALV--gm--~edK~--~VL~eL~rvLKPG-GvLVvRsa~--GlR~fLYP~Vdp---dl-~GFeil~v~hP~~--eVIN  273 (535)
                      .+..-  |.  ..+..  .+|+.+.++|+|| |.|++.-..  |-      .+..   .+ .-|..+.+..|..  +-.-
T Consensus       146 sD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~------~~~~l~~~lk~~F~~V~~~KPaSR~~S~E  219 (277)
T 3evf_A          146 CDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMP------DVLEKLELLQRRFGGTVIRNPLSRNSTHE  219 (277)
T ss_dssp             ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSH------HHHHHHHHHHHHHCCEEECCTTSCTTCCC
T ss_pred             ecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCc------cHHHHHHHHHHhcCCEEEEeCCCCCCCCc
Confidence            87432  32  12211  3568889999999 999996554  21      0110   12 3466666777832  1222


Q ss_pred             eeEEEecC
Q 041205          274 SVVLLQLP  281 (535)
Q Consensus       274 SVVvARK~  281 (535)
                      .+++++..
T Consensus       220 ~Y~V~~~r  227 (277)
T 3evf_A          220 MYYVSGAR  227 (277)
T ss_dssp             EEEESSCC
T ss_pred             eEEEEecC
Confidence            36666653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.42  E-value=0.00035  Score=79.45  Aligned_cols=110  Identities=12%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC---CcEEEEEeCChhHHHHH--HHHHhh----cCCcCCCeEEEEccccccc-c
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK---STHFDNIDIDETANNLA--RRIVSS----DDEIEKRMKFLTCDIMEVK-E  199 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~---Ga~VtGIDIDpeAIelA--R~li~~----lG~Ls~rI~Fi~GDA~el~-~  199 (535)
                      .++.+|+|.|||++++. +.++++ .+   ..+++|+|+|+.+++.|  |.++..    .| . ....+..+|..+.. .
T Consensus       320 ~~g~rVLDPaCGSG~FL-IaaA~~-l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG-i-~~~~I~~dD~L~~~~~  395 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLL-ATVSAG-FNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS-N-NAPTITGEDVCSLNPE  395 (878)
T ss_dssp             CTTCEEEETTCTTSHHH-HHHHHT-STTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT-T-BCCEEECCCGGGCCGG
T ss_pred             CCCCEEEECCCCccHHH-HHHHHH-hcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC-C-CcceEEecchhccccc
Confidence            45789999999986665 444452 32   46899999999999999  665544    23 2 23456666665421 2


Q ss_pred             CCCCcceEEeccccC----Chh-------------------------hHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          200 KLGEYDCIILAALAG----NEE-------------------------EKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       200 dL~~FDvVfiaALVg----m~e-------------------------dK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ....||+|+..--.+    +..                         -...++.++.+.|+|||++++-.++|
T Consensus       396 ~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          396 DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            335799999753331    111                         13457889999999999998877655

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.42  E-value=0.00023  Score=70.81  Aligned_cols=93  Identities=20%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.++++||-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| . +. .+  .|...+.   ..||+|
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~~-v~--~~~~~~~---~~~D~v  238 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVA--MGAEVSVFARNEHKKQDALS----MG-V-KH-FY--TDPKQCK---EELDFI  238 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSTTHHHHHH----TT-C-SE-EE--SSGGGCC---SCEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHh----cC-C-Ce-ec--CCHHHHh---cCCCEE
Confidence            67899999999999999999999994  58899999999999887764    56 2 22 22  3432221   279999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |-....      ...+....+.|+|||++++-.
T Consensus       239 id~~g~------~~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPT------HYDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCS------CCCHHHHHTTEEEEEEEEECC
T ss_pred             EECCCc------HHHHHHHHHHHhcCCEEEEEC
Confidence            964332      125677888999999998854

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.42  E-value=0.00058  Score=69.56  Aligned_cols=146  Identities=15%  Similarity=0.147  Sum_probs=88.8

Q ss_pred             CCCCEEEEEccCCChhhHHHH---HhhcCCCcE--EEEEeCCh---------hHHHHHHHHHhhcCCc-CC--CeEEEEc
Q 041205          130 AQLKKVAFVGSGPMPLTSIIL---ASQHMKSTH--FDNIDIDE---------TANNLARRIVSSDDEI-EK--RMKFLTC  192 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~L---Ak~~l~Ga~--VtGIDIDp---------eAIelAR~li~~lG~L-s~--rI~Fi~G  192 (535)
                      .+.-+|||+|-| .|+-++..   +.+.-+..+  ++.+|.++         ..-++.+.+....... ..  ..++..|
T Consensus        95 ~~~~~IlE~GFG-TGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G  173 (308)
T 3vyw_A           95 RKVIRILDVGFG-LGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG  173 (308)
T ss_dssp             CSEEEEEEECCT-TSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred             CCCcEEEEeCCC-ccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence            345689999999 58855432   222245554  56666532         2334455555443211 12  3467899


Q ss_pred             cccccccCCC--CcceEEeccccCChhhH------HHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--ccCCcEEE
Q 041205          193 DIMEVKEKLG--EYDCIILAALAGNEEEK------AKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--ELFDFKVL  262 (535)
Q Consensus       193 DA~el~~dL~--~FDvVfiaALVgm~edK------~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--dl~GFeil  262 (535)
                      |+.+....+.  .||+||+|+.-   +.|      ..+|..+++.++|||+++.-++.|.       |--  ...||++.
T Consensus       174 Da~~~l~~l~~~~~Da~flDgFs---P~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~-------VRR~L~~aGF~V~  243 (308)
T 3vyw_A          174 DARKRIKEVENFKADAVFHDAFS---PYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLS-------VRKSLLTLGFKVG  243 (308)
T ss_dssp             CHHHHGGGCCSCCEEEEEECCSC---TTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHH-------HHHHHHHTTCEEE
T ss_pred             hHHHHHhhhcccceeEEEeCCCC---cccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHH-------HHHHHHHCCCEEE
Confidence            9988766654  48999999765   333      6899999999999999999877661       221  23799984


Q ss_pred             EEEcCCCcceeeeEEEecCCCCCccc
Q 041205          263 SIFHPTNDVINSVVLLQLPKDPPKLV  288 (535)
Q Consensus       263 ~v~hP~~eVINSVVvARK~~~~~~l~  288 (535)
                      . ..+.+.- .-.++|.+..+.|.+.
T Consensus       244 k-~~G~g~K-Reml~A~~~~~~~pl~  267 (308)
T 3vyw_A          244 S-SREIGRK-RKGTVASLKAPVPPME  267 (308)
T ss_dssp             E-EECC----CEEEEEESSSCCCCCC
T ss_pred             e-cCCCCCC-CceeEEecCCCCCCCC
Confidence            3 3332222 2356666654444333

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.41  E-value=0.00028  Score=70.37  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-----ccccc-ccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLT-----CDIME-VKE  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-----GDA~e-l~~  199 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|++ |+++|.+++..+.++++ .. .    -+.+..     .|..+ +..
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~l-~~-~----~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKA--AGACPLVITDIDEGRLKFAKEI-CP-E----VVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESCHHHHHHHHHH-CT-T----CEEEECCSCCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-ch-h----cccccccccchHHHHHHHHH
Confidence            467899999999999999999999994  5776 99999999999999987 21 1    233321     11111 111


Q ss_pred             --CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 --KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 --dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .-.+||+||-....      ...+....+.|++||++++-.
T Consensus       247 ~t~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HTSSCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECC
T ss_pred             HhCCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEc
Confidence              12369999975332      356788889999999998754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.40  E-value=7.9e-05  Score=74.22  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~  202 (535)
                      ..+.++++||-+|+|++|+.++.+|+  ..|+ +|+++|.+++..+.++++    | ...-+.....|..+...   .-.
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~~Vi~~~~~~~~~~~~~~l----G-a~~vi~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGAN--HLGAGRIFAVGSRKHCCDIALEY----G-ATDIINYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSSEEEECCCHHHHHHHHHH----T-CCEEECGGGSCHHHHHHHHTTTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHHh----C-CceEEcCCCcCHHHHHHHHcCCC
Confidence            46789999999999999999999999  3577 899999999988887764    5 21111111112111111   113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+||-....      ...++...+.|+|||+++.-.
T Consensus       235 g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          235 GVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             CEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence            59999964332      356788889999999998754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.36  E-value=0.00017  Score=71.53  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~F  204 (535)
                      .+.++++||-+|+|++|+.++.+|+. ..+++|+++|.+++..+.+++    +| ...-+.. ..|..+...   .-..+
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~-~g~~~Vi~~~~~~~~~~~~~~----lG-a~~~i~~-~~~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRA-VSAARVIAVDLDDDRLALARE----VG-ADAAVKS-GAGAADAIRELTGGQGA  240 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESCHHHHHHHHH----TT-CSEEEEC-STTHHHHHHHHHGGGCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcC-CCcHHHHHHHHhCCCCC
Confidence            56889999999999999999999994 457899999999999888765    56 2111111 111111111   11269


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+||-....      ...++...+.|+|||++++-.
T Consensus       241 d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          241 TAVFDFVGA------QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred             eEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence            999975332      457888999999999998854

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.32  E-value=0.00046  Score=68.69  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---ccc-cccc--C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIM-EVKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~-el~~--d  200 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| . + ..+-..   |.. .+..  .
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~-~~~~~~~~~~~~~~i~~~~~  234 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKN----CG-A-D-VTLVVDPAKEEESSIIERIR  234 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TT-C-S-EEEECCTTTSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hC-C-C-EEEcCcccccHHHHHHHHhc
Confidence            456889999999999999999999994  58889999999999887764    56 2 2 112111   111 1111  1


Q ss_pred             ---CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 ---LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 ---L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         -..||+||-....      ...++...+.|+|||+++.-.
T Consensus       235 ~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          235 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence               1369999975432      346788888999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.31  E-value=0.00029  Score=69.95  Aligned_cols=100  Identities=16%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDv  206 (535)
                      .+.++++||-+|+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.+...|..+.... .+.+|+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKE----LG-ADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TT-CSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----CC-CCEEecCCCccHHHHHHHHhCCCCE
Confidence            56889999999999999999999994  58899999999999887764    56 211010000111110000 146999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-.+..      ...++...+.|++||+++.-.
T Consensus       234 vid~~g~------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          234 AVVTAVS------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             EEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence            9875432      346788889999999998754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.31  E-value=0.00015  Score=65.99  Aligned_cols=98  Identities=9%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--d  200 (535)
                      ..+.++++||-+| +|++|..++.+++.  .|++|+++|.+++..+.+++    .| .  ...+-..  +..+ +..  .
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~~~  104 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSR----LG-V--EYVGDSRSVDFADEILELTD  104 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHT----TC-C--SEEEETTCSTHHHHHHHHTT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-C--CEEeeCCcHHHHHHHHHHhC
Confidence            4567899999999 68889988888874  57899999999988776643    46 2  1112111  1111 111  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+|+..+  |     ...+....+.|+|||+++.-.
T Consensus       105 ~~~~D~vi~~~--g-----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          105 GYGVDVVLNSL--A-----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TCCEEEEEECC--C-----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCeEEEECC--c-----hHHHHHHHHHhccCCEEEEEc
Confidence            13599999653  3     146788899999999998754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.29  E-value=0.00029  Score=70.96  Aligned_cols=95  Identities=9%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             CCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-ccccccccC--CCCcce
Q 041205          131 QLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIMEVKEK--LGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~el~~d--L~~FDv  206 (535)
                      ++++||-+| +|++|..++.+|+ +..|++|+++|.+++..+.+++    +| . +.+ +-. .|..+....  .+.+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak-~~~g~~Vi~~~~~~~~~~~~~~----lG-a-d~v-i~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIAR-QRTDLTVIATASRPETQEWVKS----LG-A-HHV-IDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHH----TT-C-SEE-ECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHHHH----cC-C-CEE-EeCCCCHHHHHHHhcCCCceE
Confidence            789999999 9999999999999 3468999999999998888765    56 2 111 111 111111111  136999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ||-...      -...++.+.+.|+|||++++-
T Consensus       243 vid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            986432      245788889999999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.28  E-value=0.00024  Score=71.39  Aligned_cols=99  Identities=20%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc----cccccccC-
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC----DIMEVKEK-  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G----DA~el~~d-  200 (535)
                      ..+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| . +. .+-..    |..+.... 
T Consensus       191 ~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~~-vi~~~~~~~~~~~~v~~~  261 (376)
T 1e3i_A          191 AKVTPGSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDINGEKFPKAKA----LG-A-TD-CLNPRELDKPVQDVITEL  261 (376)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TT-C-SE-EECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-C-cE-EEccccccchHHHHHHHH
Confidence            456889999999999999999999994  477 89999999999887764    46 2 11 11111    11111110 


Q ss_pred             -CCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          201 -LGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       201 -L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                       .+.||+||-....      ...++...+.|++| |++++-.
T Consensus       262 ~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          262 TAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             hCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence             1369999965332      35678889999999 9998743

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.27  E-value=9e-05  Score=75.29  Aligned_cols=105  Identities=16%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cc-cc--cCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-ME-VK--EKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~e-l~--~dL  201 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++    ++| . +-+.....|. .+ +.  ...
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~----~lG-a-~~i~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARL--LGAACVIVGDQNPERLKLLS----DAG-F-ETIDLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHH----TTT-C-EEEETTSSSCHHHHHHHHHSS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHH----HcC-C-cEEcCCCcchHHHHHHHHhCC
Confidence            456889999999999999999999994  477 9999999999887765    456 2 2111111121 11 11  111


Q ss_pred             CCcceEEeccccCCh--------hhHHHHHHHHHhhcccCeEEEEE
Q 041205          202 GEYDCIILAALAGNE--------EEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       202 ~~FDvVfiaALVgm~--------edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..||+||-.......        .+....++...+.|+|||++++-
T Consensus       253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          253 PEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            269999865432100        01234788899999999998864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00017  Score=72.74  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE--Ecccccccc--
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFL--TCDIMEVKE--  199 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi--~GDA~el~~--  199 (535)
                      ....+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.|+    ++| ...-+...  ..|..+...  
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~--~Ga~~Vi~~~~~~~~~~~a~----~lG-a~~vi~~~~~~~~~~~~i~~~  259 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKT--AGASRIIGIDIDSKKYETAK----KFG-VNEFVNPKDHDKPIQEVIVDL  259 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHH--HTCSCEEEECSCTTHHHHHH----TTT-CCEEECGGGCSSCHHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHH----HcC-CcEEEccccCchhHHHHHHHh
Confidence            33467899999999999999999999994  477 8999999999988776    456 21111110  011111111  


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      ..+.||+||-....      ...++...+.|++| |++++-.
T Consensus       260 ~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          260 TDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             TTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             cCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence            11369999975332      45688889999997 9988754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.26  E-value=0.00027  Score=71.37  Aligned_cols=143  Identities=10%  Similarity=0.045  Sum_probs=81.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FDv  206 (535)
                      .+.++.+|||+||||+|+|-....+  .+-..|+|+|+....-..+.. ....| . +-+.|.++ |+.++  ....||+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~--~gv~sV~GvdvG~d~~~~pi~-~~~~g-~-~ii~~~~~~dv~~l--~~~~~Dv  159 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASL--KNVKKVMAFTLGVQGHEKPIM-RTTLG-W-NLIRFKDKTDVFNM--EVIPGDT  159 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCC-CCBTT-G-GGEEEECSCCGGGS--CCCCCSE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHh--cCCCeeeeEEeccCccccccc-cccCC-C-ceEEeeCCcchhhc--CCCCcCE
Confidence            3578899999999999999765533  344679999998653222211 11223 1 22444433 44332  2356999


Q ss_pred             EEecccc--CC--hhhHH--HHHHHHHhhcccC--eEEEEEccc--cccc-ccCCCCcccc-CCcEEEEEEcCCC--cce
Q 041205          207 IILAALA--GN--EEEKA--KILGHIRKYMKEG--GVLLVRSAK--GARA-FLYPVVEHEL-FDFKVLSIFHPTN--DVI  272 (535)
Q Consensus       207 VfiaALV--gm--~edK~--~VL~eL~rvLKPG--GvLVvRsa~--GlR~-fLYP~Vdpdl-~GFeil~v~hP~~--eVI  272 (535)
                      |+.|..-  |.  ..+..  .+|+-+.++|+||  |.|++.-..  |-.. -++.    .+ .-|..+.+..|..  +-.
T Consensus       160 VLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~----~lk~~F~~V~~~KPaSR~~S~  235 (282)
T 3gcz_A          160 LLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELS----RLQLKHGGGLVRVPLSRNSTH  235 (282)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHH----HHHHHHCCEEECCTTSCTTCC
T ss_pred             EEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHH----HHHHhcCCEEEEcCCCcccCc
Confidence            9987443  33  12211  3567778899999  999997665  3100 0000    12 3466666777822  122


Q ss_pred             eeeEEEecC
Q 041205          273 NSVVLLQLP  281 (535)
Q Consensus       273 NSVVvARK~  281 (535)
                      -.+++++..
T Consensus       236 E~Y~V~~~r  244 (282)
T 3gcz_A          236 EMYWVSGTR  244 (282)
T ss_dssp             CEEEETTCC
T ss_pred             ceeEEEecC
Confidence            236666653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.26  E-value=0.00022  Score=71.62  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=70.6

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc----ccccccc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC----DIMEVKE  199 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G----DA~el~~  199 (535)
                      ....+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| . +. .+-..    |..+...
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~~-vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKA--AGASRIIGVGTHKDKFPKAIE----LG-A-TE-CLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----TT-C-SE-EECGGGCSSCHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-C-cE-EEecccccchHHHHHH
Confidence            33467889999999999999999999994  477 89999999999887764    56 2 11 11111    1111111


Q ss_pred             C--CCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          200 K--LGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       200 d--L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      .  .+.||+||-....      ...+....+.|+|| |+++.-.
T Consensus       256 ~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          256 EKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence            1  1369999965332      35678889999999 9988743

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.25  E-value=0.00016  Score=73.13  Aligned_cols=97  Identities=19%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDv  206 (535)
                      .+.++++||-+|+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| . +  .++..+-.+..... ..||+
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~Vi~~~~~~~~~~~a~~----lG-a-~--~vi~~~~~~~~~~~~~g~Dv  260 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKA----LG-A-D--EVVNSRNADEMAAHLKSFDF  260 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HT-C-S--EEEETTCHHHHHTTTTCEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C-c--EEeccccHHHHHHhhcCCCE
Confidence            56889999999999999999999994  58899999999999888775    45 2 1  11211111111111 46999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-....      ...++...+.|+|||+++.-.
T Consensus       261 vid~~g~------~~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          261 ILNTVAA------PHNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEECCSS------CCCHHHHHTTEEEEEEEEECC
T ss_pred             EEECCCC------HHHHHHHHHHhccCCEEEEec
Confidence            9965433      124567788999999988743

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.00029  Score=70.69  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc----cccccccC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC----DIMEVKEK  200 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G----DA~el~~d  200 (535)
                      ...+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| . +.+ +-..    |..+....
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~~v-i~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLNPDKFEKAKV----FG-A-TDF-VNPNDHSEPISQVLSK  257 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TT-C-CEE-ECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hC-C-ceE-EeccccchhHHHHHHH
Confidence            3456889999999999999999999994  577 89999999999888764    46 2 111 1111    11111111


Q ss_pred             --CCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          201 --LGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                        .+.+|+||-....      ...+....+.|+|| |++++-.
T Consensus       258 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          258 MTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEc
Confidence              1369999975332      34678889999999 9988743

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.19  E-value=0.00027  Score=71.57  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-cc-cccc--CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-IM-EVKE--KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A~-el~~--dL  201 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| . +-|.....| .. .+..  ..
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~~i~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDLNPARLAHAKA----QG-F-EIADLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TT-C-EEEETTSSSCHHHHHHHHHSS
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH--CCCCeEEEEcCCHHHHHHHHH----cC-C-cEEccCCcchHHHHHHHHhCC
Confidence            456889999999999999999999994  477 79999999999888764    56 2 211111111 11 1111  11


Q ss_pred             CCcceEEeccccC--------C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAG--------N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVg--------m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..||+||-.....        + .+++...+....+.|++||++++-.
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            3699999643321        1 1234467889999999999998743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.16  E-value=0.0017  Score=56.56  Aligned_cols=96  Identities=11%  Similarity=0.028  Sum_probs=67.6

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--c--CCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--E--KLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~--dL~~FDvV  207 (535)
                      ..+|+-+|+|.+|.........  .|..|+++|.|++.++.+++    .|     +.++.||+.+..  .  ....+|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE----RG-----VRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH----TT-----CEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----cC-----CCEEECCCCCHHHHHhcCcccCCEE
Confidence            4789999999888776655442  57899999999999877653    45     467889986521  1  23468999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-   ......+-...+.+.|+..++.|..
T Consensus        76 i~~~~~---~~~n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           76 ILTIPN---GYEAGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EECCSC---HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             EEECCC---hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            875333   2333334456677889999888764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.14  E-value=0.00042  Score=69.59  Aligned_cols=100  Identities=18%  Similarity=0.123  Sum_probs=69.9

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc----cccccccC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC----DIMEVKEK  200 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G----DA~el~~d  200 (535)
                      ...+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| . +. .+-..    |..+....
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~~-vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKA--AGAARIIGVDINKDKFAKAKE----VG-A-TE-CVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TT-C-SE-EECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-C-ce-EecccccchhHHHHHHH
Confidence            3466889999999999999999999994  577 89999999999888764    46 2 11 11111    11111111


Q ss_pred             --CCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          201 --LGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                        .+.||+||-....      ...+....+.|++| |++++-.
T Consensus       257 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEec
Confidence              1369999865332      34678888999999 9988743

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.11  E-value=0.00069  Score=66.79  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~  203 (535)
                      .++.++++||-+|+|++|..++.+|+ ...|++|+++|.+++..+.+++    +| ...-+.....|..+...   .-.+
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~-~~~g~~Vi~~~~~~~r~~~~~~----~G-a~~~i~~~~~~~~~~v~~~t~g~g  232 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAK-NVFGAKVIAVDINQDKLNLAKK----IG-ADVTINSGDVNPVDEIKKITGGLG  232 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHH-HTSCCEEEEEESCHHHHHHHHH----TT-CSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHH-HhCCCEEEEEECcHHHhhhhhh----cC-CeEEEeCCCCCHHHHhhhhcCCCC
Confidence            35688999999999999999999888 4668999999999998777664    45 22223332333322111   1134


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++.++.-      ...+....+.+++||.+++-.
T Consensus       233 ~d~~~~~~~~------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          233 VQSAIVCAVA------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             EEEEEECCSC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             ceEEEEeccC------cchhheeheeecCCceEEEEe
Confidence            7888876443      456788888999999998754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.11  E-value=0.00055  Score=68.81  Aligned_cols=99  Identities=14%  Similarity=0.127  Sum_probs=70.3

Q ss_pred             HhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---ccccccc-
Q 041205          125 ENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKE-  199 (535)
Q Consensus       125 ~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~-  199 (535)
                      ....+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +| . + . ++..   |..+... 
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~----~G-a-~-~-~~~~~~~~~~~~~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKK--AKCHVIGTCSSDEKSAFLKS----LG-C-D-R-PINYKTEPVGTVLKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-C-S-E-EEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHH----cC-C-c-E-EEecCChhHHHHHHH
Confidence            334678899999999 89999999999994  58999999999998887765    46 2 1 1 1111   1111111 


Q ss_pred             -CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 -KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 -dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ....+|+||-.+  |   .  ..++.+.+.|++||++++-.
T Consensus       227 ~~~~g~D~vid~~--g---~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          227 EYPEGVDVVYESV--G---G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             HCTTCEEEEEECS--C---T--HHHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCCCEEEECC--C---H--HHHHHHHHHHhcCCEEEEEe
Confidence             113699998653  3   1  46788899999999998754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.10  E-value=0.0004  Score=69.55  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc----cccccccC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC----DIMEVKEK  200 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G----DA~el~~d  200 (535)
                      ...+.++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| . +. .+-..    |..+....
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~--~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~~-vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKV--AGASRIIGVDINKDKFARAKE----FG-A-TE-CINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----HT-C-SE-EECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-C-ce-EeccccccccHHHHHHH
Confidence            3456889999999999999999999994  477 89999999999888775    45 2 11 11111    11111111


Q ss_pred             --CCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          201 --LGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                        .+.||+||-....      ...+....+.|+|| |++++-.
T Consensus       256 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEe
Confidence              1369999865432      34678889999999 9998753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.06  E-value=0.00032  Score=70.99  Aligned_cols=98  Identities=18%  Similarity=0.157  Sum_probs=69.3

Q ss_pred             hC-CCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc------cccc-c
Q 041205          127 TG-VAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC------DIME-V  197 (535)
Q Consensus       127 ~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G------DA~e-l  197 (535)
                      .. +.++++||-+|+|++|..++.+|+.  .| ++|+++|.+++..+.+++    +| . +  .++..      |..+ +
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          190 YPESFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEE----IG-A-D--LTLNRRETSVEERRKAI  259 (380)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHH----TT-C-S--EEEETTTSCHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----cC-C-c--EEEeccccCcchHHHHH
Confidence            35 6789999999999999999999994  57 599999999998887764    56 2 1  12221      1111 1


Q ss_pred             cc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..  .-..||+||-....      ...+....+.|+|||+++.-.
T Consensus       260 ~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          260 MDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            11  11259999965433      235778888999999998753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.06  E-value=0.00042  Score=68.96  Aligned_cols=94  Identities=7%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             CCCEEEEE-ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE-cccccccc--CCCCcce
Q 041205          131 QLKKVAFV-GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT-CDIMEVKE--KLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeI-GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~-GDA~el~~--dL~~FDv  206 (535)
                      ++++||-+ |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| . +.+ +-. .|..+...  ....||+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~~v-i~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKA--YGLRVITTASRNETIEWTKK----MG-A-DIV-LNHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH--TTCEEEEECCSHHHHHHHHH----HT-C-SEE-ECTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cC-C-cEE-EECCccHHHHHHHhCCCCccE
Confidence            79999999 799999999999993  68999999999999888876    35 1 111 100 11111111  1236999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ||-...      -...+..+.+.|+|||+++.-
T Consensus       221 v~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            986432      345678888999999999763

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.02  E-value=0.00065  Score=70.30  Aligned_cols=79  Identities=22%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CC--C
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KL--G  202 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL--~  202 (535)
                      .+.++..++|..+|.+|-|..++ +++.++++|+|+|+|++|++.|+++    .  .++++|++++..++..   ..  .
T Consensus        54 ~i~pggiyVD~TlG~GGHS~~iL-~~lg~~GrVig~D~Dp~Al~~A~rL----~--~~Rv~lv~~nF~~l~~~L~~~g~~  126 (347)
T 3tka_A           54 NIRPDGIYIDGTFGRGGHSRLIL-SQLGEEGRLLAIDRDPQAIAVAKTI----D--DPRFSIIHGPFSALGEYVAERDLI  126 (347)
T ss_dssp             CCCTTCEEEESCCTTSHHHHHHH-TTCCTTCEEEEEESCHHHHHHHTTC----C--CTTEEEEESCGGGHHHHHHHTTCT
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHhh----c--CCcEEEEeCCHHHHHHHHHhcCCC
Confidence            45789999999999888886655 4355789999999999999999532    2  2689999998776532   11  1


Q ss_pred             -CcceEEecccc
Q 041205          203 -EYDCIILAALA  213 (535)
Q Consensus       203 -~FDvVfiaALV  213 (535)
                       .+|.|+++-.|
T Consensus       127 ~~vDgILfDLGV  138 (347)
T 3tka_A          127 GKIDGILLDLGV  138 (347)
T ss_dssp             TCEEEEEEECSC
T ss_pred             CcccEEEECCcc
Confidence             47777776555

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.99  E-value=0.0019  Score=63.61  Aligned_cols=48  Identities=15%  Similarity=-0.044  Sum_probs=42.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      .+++.|||+|||+ |.|++..++   .|.+++|||+++++++.|++.++...
T Consensus       234 ~~~~~vlD~f~Gs-Gt~~~~a~~---~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGT-GTTLIAAAR---WGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            6789999999995 888888777   68899999999999999999988764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.98  E-value=0.00061  Score=69.44  Aligned_cols=101  Identities=13%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGE  203 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~  203 (535)
                      .+.++++||-+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++++    | ...-+.....|..+...   .-.+
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~l----G-a~~vi~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKH--AGASKVILSEPSEVRRNLAKEL----G-ADHVIDPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHHH----T-CSEEECTTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHc----C-CCEEEcCCCCCHHHHHHHHhCCCC
Confidence            46889999999999999999999994  577 999999999999888754    5 11101100111111111   1135


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhc----ccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYM----KEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvL----KPGGvLVvRs  240 (535)
                      +|+||-....     ....+..+.+.|    ++||++++-.
T Consensus       283 ~D~vid~~g~-----~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          283 AKLFLEATGV-----PQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CSEEEECSSC-----HHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCEEEECCCC-----cHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            9999964332     223444454455    9999998854

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.97  E-value=0.00041  Score=68.42  Aligned_cols=98  Identities=14%  Similarity=0.042  Sum_probs=69.0

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--cccccccc---C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEVKE---K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el~~---d  200 (535)
                      ..+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-.  .|..+...   .
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g-a--~~~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKM--KGAHTIAVASTDEKLKIAKE----YG-A--EYLINASKEDILRQVLKFTN  214 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-C--SEEEETTTSCHHHHHHHHTT
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C--cEEEeCCCchHHHHHHHHhC
Confidence            4568899999999 89999999999994  68999999999998887765    45 2  111211  11111111   1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...||+||-.+..       ..++...+.|+|||+++.-.
T Consensus       215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence            2359999865332       35778888999999998854

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.96  E-value=0.00025  Score=71.13  Aligned_cols=99  Identities=15%  Similarity=0.031  Sum_probs=70.2

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc------c
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK------E  199 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~------~  199 (535)
                      ...+.++++||-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| . +  .++..+..++.      .
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKA--TGAEVIVTSSSREKLDRAFA----LG-A-D--HGINRLEEDWVERVYALT  253 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----HT-C-S--EEEETTTSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEecCchhHHHHHH----cC-C-C--EEEcCCcccHHHHHHHHh
Confidence            3457899999999999999999999994  58999999999998888765    45 2 1  11222211111      1


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ....||+||-.+. +      ..+....+.|+|||++++-..
T Consensus       254 ~g~g~D~vid~~g-~------~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          254 GDRGADHILEIAG-G------AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             TTCCEEEEEEETT-S------SCHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCceEEEECCC-h------HHHHHHHHHhhcCCEEEEEec
Confidence            1236999986533 2      246777889999999988653

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.96  E-value=0.0011  Score=65.34  Aligned_cols=102  Identities=16%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~  203 (535)
                      ..+.++++||-+|+|++|..++.+|+. .....|+++|.+++..++|++    +| ...-+.....|..+.   ..+...
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~-~G~~~vi~~~~~~~k~~~a~~----lG-a~~~i~~~~~~~~~~~~~~~~~~g  229 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVA-LGAKSVTAIDISSEKLALAKS----FG-AMQTFNSSEMSAPQMQSVLRELRF  229 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHH----TT-CSEEEETTTSCHHHHHHHHGGGCS
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHH-cCCcEEEEEechHHHHHHHHH----cC-CeEEEeCCCCCHHHHHHhhcccCC
Confidence            456899999999999999999999994 433567899999998887765    56 221122111222111   123346


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+||-....      ...++...+.+++||.+++-.
T Consensus       230 ~d~v~d~~G~------~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          230 NQLILETAGV------PQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             SEEEEECSCS------HHHHHHHHHHCCTTCEEEECC
T ss_pred             cccccccccc------cchhhhhhheecCCeEEEEEe
Confidence            8988865433      456788889999999998854

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.94  E-value=0.00055  Score=74.64  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             ccchhhHHhHHHHHHHHHH------hh-CCCCCCEEEEEccCCChhhHHHHHhhcC---------C--CcEEEEEeCChh
Q 041205          107 PYYENYVKLAKLEYGALIE------NT-GVAQLKKVAFVGSGPMPLTSIILASQHM---------K--STHFDNIDIDET  168 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~------~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l---------~--Ga~VtGIDIDpe  168 (535)
                      .||.+.-.+.+.++--+..      .. .-.++-+|+|+|-| .|+..+.+.+...         +  -.+|+.+|..|-
T Consensus        27 ~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG-~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~  105 (689)
T 3pvc_A           27 IYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFG-TGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPL  105 (689)
T ss_dssp             --CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred             cccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCC
Confidence            5666666665444321111      01 01356799999999 6999888766310         1  167999999553


Q ss_pred             HHHHHH--------------HHHhhcCC---------cCC---CeEEEEccccccccCC-----CCcceEEeccccCChh
Q 041205          169 ANNLAR--------------RIVSSDDE---------IEK---RMKFLTCDIMEVKEKL-----GEYDCIILAALAGNEE  217 (535)
Q Consensus       169 AIelAR--------------~li~~lG~---------Ls~---rI~Fi~GDA~el~~dL-----~~FDvVfiaALVgm~e  217 (535)
                      ..+..+              ++++....         +.+   .++++.||+.+....+     ..||++|+|...   +
T Consensus       106 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~---p  182 (689)
T 3pvc_A          106 HVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA---P  182 (689)
T ss_dssp             CHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC---C
T ss_pred             CHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC---C
Confidence            332222              33333210         112   5788999998877655     459999999776   6


Q ss_pred             hH------HHHHHHHHhhcccCeEEEEEcc
Q 041205          218 EK------AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       218 dK------~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .|      ..+|..+.++++|||.+...+.
T Consensus       183 ~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  212 (689)
T 3pvc_A          183 AKNPDMWNEQLFNAMARMTRPGGTFSTFTA  212 (689)
T ss_dssp             --CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred             CCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence            77      8999999999999999988664

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.94  E-value=0.00044  Score=68.77  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE---cccccccc---
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLT---CDIMEVKE---  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~---GDA~el~~---  199 (535)
                      ..+ ++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| . +.  ++.   .|..+...   
T Consensus       164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~----~G-a-~~--~~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          164 GPI-SGKSVLITGAGPLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKK----VG-A-DY--VINPFEEDVVKEVMDIT  232 (348)
T ss_dssp             SCC-TTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH----HT-C-SE--EECTTTSCHHHHHHHHT
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-C-CE--EECCCCcCHHHHHHHHc
Confidence            356 89999999999999999999994  577 99999999998887765    35 2 11  111   11111111   


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+||-....      ...+....+.|++||+++.-.
T Consensus       233 ~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          233 DGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence            11359999975432      356788889999999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.93  E-value=0.003  Score=56.81  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--cc---CCCCcc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KE---KLGEYD  205 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~---dL~~FD  205 (535)
                      +++|+.+|+|.+|.........  . |..|+++|.|++.++.++    ..|     +.++.||+.+.  ..   ...++|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~----~~g-----~~~~~gd~~~~~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIREEAAQQHR----SEG-----RNVISGDATDPDFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHH----HTT-----CCEEECCTTCHHHHHTBCSCCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHH----HCC-----CCEEEcCCCCHHHHHhccCCCCCC
Confidence            5799999999888776554442  4 789999999998876654    335     34667877542  11   245799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++...-   ......+-...+.+.|++.++++.
T Consensus       108 ~vi~~~~~---~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          108 LVLLAMPH---HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             EEEECCSS---HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EEEEeCCC---hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99985332   222333334566678888888765

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.93  E-value=0.0008  Score=67.22  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             CCCCC------CEEEEEccCCChhhH-HHHH-hhcCCCcE-EEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          128 GVAQL------KKVAFVGSGPMPLTS-IILA-SQHMKSTH-FDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       128 ~l~~p------kRVLeIGSGplPlTA-I~LA-k~~l~Ga~-VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      .+.++      ++||-+|+|++|+.+ +.+| +  ..|++ |+++|.+++   ..+.+++    +| . +.+.....|..
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k--~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG-a-~~v~~~~~~~~  234 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVD--DKGYENLYCLGRRDRPDPTIDIIEE----LD-A-TYVDSRQTPVE  234 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHC--TTCCCEEEEEECCCSSCHHHHHHHH----TT-C-EEEETTTSCGG
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHH--HcCCcEEEEEeCCcccHHHHHHHHH----cC-C-cccCCCccCHH
Confidence            34677      999999999999999 9999 7  35776 999999998   8777764    56 2 11111011111


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++....+.||+||-....      ...+....+.|+|||+++.-.
T Consensus       235 ~i~~~~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          235 DVPDVYEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             GHHHHSCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHhCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence            111001269999865332      346788889999999998753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.92  E-value=0.0002  Score=71.67  Aligned_cols=100  Identities=20%  Similarity=0.207  Sum_probs=68.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-ccccCC-CCc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-EVKEKL-GEY  204 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-el~~dL-~~F  204 (535)
                      ..+.++++||-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| . +  .++..+-. ++.... +.|
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~--~v~~~~~~~~~~~~~~~~~  244 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMK----MG-A-D--HYIATLEEGDWGEKYFDTF  244 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HT-C-S--EEEEGGGTSCHHHHSCSCE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cC-C-C--EEEcCcCchHHHHHhhcCC
Confidence            467889999999999999999999994  58899999999998888775    45 2 1  11211111 111111 479


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+||-.....    ....++...+.|+|||+++.-.
T Consensus       245 D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          245 DLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             CEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            9999654320    0123566778999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.91  E-value=0.00096  Score=65.26  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      ....+.++++||-+|+|++|..++.+|+.  .|++|+++| +++..+.+++    +| . +  .++ -|..++   ...|
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~-~~~~~~~~~~----lG-a-~--~v~-~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNN--AGYVVDLVS-ASLSQALAAK----RG-V-R--HLY-REPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEC-SSCCHHHHHH----HT-E-E--EEE-SSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEE-ChhhHHHHHH----cC-C-C--EEE-cCHHHh---CCCc
Confidence            34467899999999999999999999994  588999999 9988888765    56 2 1  112 242222   3469


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+||-...-      . .+....+.|+|||+++.-
T Consensus       201 Dvv~d~~g~------~-~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVNS------Q-NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCCc------h-hHHHHHHHhcCCCEEEEE
Confidence            999864322      1 135678899999999876

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.90  E-value=0.00053  Score=67.57  Aligned_cols=105  Identities=11%  Similarity=-0.008  Sum_probs=71.5

Q ss_pred             HHHHHhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--ccccc
Q 041205          121 GALIENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEV  197 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el  197 (535)
                      ..+.....+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+.   +++| .  ...+-..  |..+.
T Consensus       139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~---~~~g-~--~~~~~~~~~~~~~~  210 (336)
T 4b7c_A          139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARL--KGCRVVGIAGGAEKCRFLV---EELG-F--DGAIDYKNEDLAAG  210 (336)
T ss_dssp             HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH---HTTC-C--SEEEETTTSCHHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH---HHcC-C--CEEEECCCHHHHHH
Confidence            34434456789999999998 9999999999984  6899999999998877662   3446 2  1112111  11111


Q ss_pred             cc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..  ..+.+|+||-.+..       ..+....+.|++||++++-.
T Consensus       211 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          211 LKRECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHhcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEe
Confidence            10  11369999864321       37888999999999998754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.89  E-value=0.00044  Score=68.12  Aligned_cols=99  Identities=9%  Similarity=-0.045  Sum_probs=69.6

Q ss_pred             hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--
Q 041205          126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--  199 (535)
Q Consensus       126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--  199 (535)
                      ...+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-..  |..+ +..  
T Consensus       135 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~G-a--~~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          135 TYQVKPGEIILFHAAAGGVGSLACQWAKA--LGAKLIGTVSSPEKAAHAKA----LG-A--WETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HT-C--SEEEETTTSCHHHHHHHHT
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C--CEEEeCCCccHHHHHHHHh
Confidence            34568899999999 89999999999994  58999999999999888875    35 1  1112111  1111 111  


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+||-.+..       ..+....+.|+|||++++-.
T Consensus       206 ~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence            11369999864322       35778889999999998854

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.84  E-value=0.0033  Score=61.77  Aligned_cols=97  Identities=16%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             HhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCC
Q 041205          125 ENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLG  202 (535)
Q Consensus       125 ~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~  202 (535)
                      ....+.++++||-+| +|++|+.++.+|+.  .|++|++++ +++..+.+    +++| ...   ++..+-.+ +.....
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~--~Ga~vi~~~-~~~~~~~~----~~lG-a~~---~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ--KGTTVITTA-SKRNHAFL----KALG-AEQ---CINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEE-CHHHHHHH----HHHT-CSE---EEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHH--cCCEEEEEe-ccchHHHH----HHcC-CCE---EEeCCCcchhhhhcc
Confidence            345678999999997 99999999999994  589999998 44444544    4567 321   22222122 233345


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .||+||-...-      .. +....+.|+|||+++.-
T Consensus       215 g~D~v~d~~g~------~~-~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          215 PVDAVIDLVGG------DV-GIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             CEEEEEESSCH------HH-HHHHGGGEEEEEEEEEC
T ss_pred             CCCEEEECCCc------HH-HHHHHHhccCCCEEEEe
Confidence            79999864221      22 37888999999999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.84  E-value=0.00076  Score=67.84  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          129 VAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +.++++||-+| +|++|..++.+|+.  .|++|++++ +++..+.++    ++| ...-+.....|..+......++|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~--~Ga~Vi~~~-~~~~~~~~~----~lG-a~~v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKA--WDAHVTAVC-SQDASELVR----KLG-ADDVIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHH----HTT-CSEEEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEe-ChHHHHHHH----HcC-CCEEEECCchHHHHHHhhcCCCCEE
Confidence            67899999999 89999999999994  588999999 666665554    556 2111111111111111223569999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |-.+..     ....+....+.+++||+++.-.
T Consensus       253 id~~g~-----~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          253 LDNVGG-----STETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EESSCT-----THHHHGGGGBCSSSCCEEEESC
T ss_pred             EECCCC-----hhhhhHHHHHhhcCCcEEEEeC
Confidence            865432     1234677788999999998754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.83  E-value=0.00074  Score=67.22  Aligned_cols=99  Identities=13%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccccc-c-
Q 041205          125 ENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVK-E-  199 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~-~-  199 (535)
                      ....+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.++++    | . +.  ++..  |..+.. . 
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~----g-a-~~--v~~~~~~~~~~v~~~  222 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKG--MGAKVIAVVNRTAATEFVKSV----G-A-DI--VLPLEEGWAKAVREA  222 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHH----T-C-SE--EEESSTTHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhc----C-C-cE--EecCchhHHHHHHHH
Confidence            3346788999999997 9999999999994  589999999999988887763    5 2 11  1111  211111 1 


Q ss_pred             -CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 -KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 -dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ....+|+||-.+..       ..+....+.|++||++++-.
T Consensus       223 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence             11259999865432       25778889999999998754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.81  E-value=0.00075  Score=67.46  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             hhCCCCCCEEEEE-ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCC
Q 041205          126 NTGVAQLKKVAFV-GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLG  202 (535)
Q Consensus       126 ~~~l~~pkRVLeI-GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~  202 (535)
                      ...+.++++||-+ |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....|..+...  ...
T Consensus       162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          162 MAGLTEGESVLIHGGTSGIGTTAIQLARA--FGAEVYATAGSTGKCEACER----LG-AKRGINYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             TTCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HT-CSEEEETTTSCHHHHHHHHHSS
T ss_pred             hcCCCCCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cC-CCEEEeCCchHHHHHHHHHhCC
Confidence            3457889999999 789999999999994  68999999999999888876    35 21111110111111000  023


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+|+||-.+..       ..+....+.|+|||+++.-.
T Consensus       235 g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          235 GVDIILDMIGA-------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             CEEEEEESCCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCCH-------HHHHHHHHHhccCCEEEEEE
Confidence            69999865432       15777888999999998754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.81  E-value=0.00083  Score=67.25  Aligned_cols=99  Identities=15%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             CCC-CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          128 GVA-QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~-~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      .+. ++++||-+|+|++|..++.+|+.  .|++|+++|.+++..+.++   +++| . +.+ +-..|...+....+.||+
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~~~~~~~~~~~---~~lG-a-~~v-i~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSNKKREEAL---QDLG-A-DDY-VIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSTTHHHHHH---TTSC-C-SCE-EETTCHHHHHHSTTTEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHH---HHcC-C-cee-eccccHHHHHHhcCCCCE
Confidence            456 89999999999999999999994  5789999999998877665   2456 2 222 211221111111246999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-.....      ..++...+.|+|||+++.-.
T Consensus       248 vid~~g~~------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          248 VIDTVPVH------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEECCCSC------CCSHHHHTTEEEEEEEEECS
T ss_pred             EEECCCCh------HHHHHHHHHhccCCEEEEeC
Confidence            98654321      23556678999999998753

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.77  E-value=0.0058  Score=63.39  Aligned_cols=109  Identities=14%  Similarity=-0.044  Sum_probs=68.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHh-------hc------CCCcEEEEEeCCh-hHHHHHHHHHhhc----------CCcCCC
Q 041205          131 QLKKVAFVGSGPMPLTSIILAS-------QH------MKSTHFDNIDIDE-TANNLARRIVSSD----------DEIEKR  186 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk-------~~------l~Ga~VtGIDIDp-eAIelAR~li~~l----------G~Ls~r  186 (535)
                      .+.+|+|+|||.+|.|.+.+..       +.      .|..+|.--|+-. +.+.+-+.+-...          | ...+
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~-~~~~  130 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAA-DGNR  130 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC----CCCB
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccc-cCCC
Confidence            3699999999998888766321       11      2567777777654 3333443332110          0 0112


Q ss_pred             eEEEEccccc---cccCCCCcceEEeccccCCh---h-----------------------------------hHHHHHHH
Q 041205          187 MKFLTCDIME---VKEKLGEYDCIILAALAGNE---E-----------------------------------EKAKILGH  225 (535)
Q Consensus       187 I~Fi~GDA~e---l~~dL~~FDvVfiaALVgm~---e-----------------------------------dK~~VL~e  225 (535)
                      --|+.|....   -+++.+.||+||..+.+|+.   +                                   |-..+|+.
T Consensus       131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~  210 (374)
T 3b5i_A          131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA  210 (374)
T ss_dssp             CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2355555543   23455779999988887762   2                                   33457889


Q ss_pred             HHhhcccCeEEEEEc
Q 041205          226 IRKYMKEGGVLLVRS  240 (535)
Q Consensus       226 L~rvLKPGGvLVvRs  240 (535)
                      .++.|+|||++++-.
T Consensus       211 ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          211 RAAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHhCCCCEEEEEE
Confidence            999999999998854

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.75  E-value=0.0071  Score=59.09  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh-------hcCCcC-------------CCeEEE
Q 041205          132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVS-------SDDEIE-------------KRMKFL  190 (535)
Q Consensus       132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~-------~lG~Ls-------------~rI~Fi  190 (535)
                      -++|..||+|.+|.+ +..+++   .|..|+.+|++++.++.+++.+.       +.|.+.             .++++ 
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-   90 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   90 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-
Confidence            368999999998874 444555   57899999999999988765432       123111             13444 


Q ss_pred             EccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          191 TCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       191 ~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..|..   ....+.|+|+.+- .....-|..++.++.+.++||.+|+..
T Consensus        91 ~~~~~---~~~~~aD~Vi~av-p~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           91 STDAA---SVVHSTDLVVEAI-VENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             ESCHH---HHTTSCSEEEECC-CSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             ecCHH---HhhcCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            23332   1345789999863 211234788999999999999877543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.75  E-value=0.00083  Score=65.33  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccccCCCCcce
Q 041205          129 VAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKEKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~dL~~FDv  206 (535)
                      +.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +| . +.  ++..+- .++.....+||+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g-a-~~--~~~~~~~~~~~~~~~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLA----LG-A-EE--AATYAEVPERAKAWGGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHH----TT-C-SE--EEEGGGHHHHHHHTTSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cC-C-CE--EEECCcchhHHHHhcCceE
Confidence            678999999997 9999999999984  58899999999998887754    56 2 21  122111 112222357999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||- +  |   .  ..+....+.|+|||+++.-.
T Consensus       193 vid-~--g---~--~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          193 VLE-V--R---G--KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEE-C--S---C--TTHHHHHTTEEEEEEEEEC-
T ss_pred             EEE-C--C---H--HHHHHHHHhhccCCEEEEEe
Confidence            987 3  3   1  35788889999999988743

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.74  E-value=0.00079  Score=68.97  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -++++|+.||+|++|..+..+++.  .|++|+++|.+++..+.+++.   .|   ..+.....+..++...+..+|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~~~~l~~~~~~---~g---~~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANG--MGATVTVLDINIDKLRQLDAE---FC---GRIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH---TT---TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHh---cC---CeeEeccCCHHHHHHHHcCCCEEEE
Confidence            468999999999999999988884  678999999999988776643   34   1222221121122222246899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .......+.+.-+.+...+.|+|||+|+--.
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            6554211111112456677899999887644

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.74  E-value=0.00039  Score=68.96  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCC
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLG  202 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~  202 (535)
                      ...+ ++++||-+|+|++|..++.+|+.  .|+ +|+++|.+++..+.++++ ...- +.    ....|..+...  ...
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~l-a~~v-~~----~~~~~~~~~~~~~~~~  230 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRA--SGAGPILVSDPNPYRLAFARPY-ADRL-VN----PLEEDLLEVVRRVTGS  230 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHGGGTTT-CSEE-EC----TTTSCHHHHHHHHHSS
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-HHhc-cC----cCccCHHHHHHHhcCC
Confidence            3456 89999999999999999999994  578 899999999988887765 2111 00    00011111110  023


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+||-....      ...++...+.|++||+++.-.
T Consensus       231 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          231 GVEVLLEFSGN------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             CEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            69999865332      346788889999999988753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.001  Score=66.04  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccC--C
Q 041205          128 GVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEK--L  201 (535)
Q Consensus       128 ~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~d--L  201 (535)
                      .+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-..   +..+....  .
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~~~~  236 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKA--MGYRVLGIDGGEGKEELFRS----IG-G--EVFIDFTKEKDIVGAVLKATD  236 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECSTTHHHHHHH----TT-C--CEEEETTTCSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHH--CCCcEEEEcCCHHHHHHHHH----cC-C--ceEEecCccHhHHHHHHHHhC
Confidence            5678999999998 7889999998884  58899999999998877664    45 2  1111111   11111110  0


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+|+||..+..      ...++...+.|++||+++.-.
T Consensus       237 ~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          237 GGAHGVINVSVS------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             SCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred             CCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence            269999876433      357888999999999998754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.70  E-value=0.0013  Score=64.59  Aligned_cols=100  Identities=17%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc---ccccccC
Q 041205          125 ENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD---IMEVKEK  200 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD---A~el~~d  200 (535)
                      ....+.++++||-+|+ |++|..++.+++.  .|++|+++|.+++..+.+++    +| .  ...+-..|   ..+....
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~  209 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQ----IG-F--DAAFNYKTVNSLEEALKK  209 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-C--SEEEETTSCSCHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cC-C--cEEEecCCHHHHHHHHHH
Confidence            3346688999999997 8899999888884  68999999999988877743    35 2  11121111   1111110


Q ss_pred             --CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 --LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .+.+|+|+..+..       ..+....+.|+|||++++-.
T Consensus       210 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          210 ASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEe
Confidence              1469999875432       24788889999999998754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.65  E-value=0.0015  Score=64.76  Aligned_cols=98  Identities=13%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--C
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--d  200 (535)
                      ..+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +| . + ..+-..  |..+ +..  .
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~----~g-a-~-~~~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKL--FGARVIATAGSEDKLRRAKA----LG-A-D-ETVNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HT-C-S-EEEETTSTTHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cC-C-C-EEEcCCcccHHHHHHHHhC
Confidence            35678999999998 9999999999984  58899999999999888764    35 2 1 111111  1111 111  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+||-.+. +      ..++.+.+.|++||+++.-.
T Consensus       233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence            136999997544 2      24677788999999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.65  E-value=0.0038  Score=55.08  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--cc--CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--KE--KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--~~--dL~~FD  205 (535)
                      .++++|+-+|+|++|......+..  .|..|+.+|.+++.++.++.   ..|     +.++.+|..+.  ..  ...++|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~---~~g-----~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNS---EFS-----GFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCT---TCC-----SEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHh---cCC-----CcEEEecCCCHHHHHHcCcccCC
Confidence            567899999999888776655542  57899999999987543221   233     45677776431  11  134699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|++....   ......+..+.+.+.|...++.+.
T Consensus        87 ~Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           87 MVFAFTND---DSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             EEEECSSC---HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEEeCC---cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            99986433   344455555666667777777765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.65  E-value=0.00073  Score=66.94  Aligned_cols=100  Identities=12%  Similarity=0.014  Sum_probs=67.2

Q ss_pred             HhhCCCCCCEEEEEccC-CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--ccccc-ccc-
Q 041205          125 ENTGVAQLKKVAFVGSG-PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIME-VKE-  199 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSG-plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~e-l~~-  199 (535)
                      ....+.++++||-+|+| ++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-.  .|..+ +.. 
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lg-a--~~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQI--LNFRLIAVTRNNKHTEELLR----LG-A--AYVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HT-C--SEEEETTTSCHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----CC-C--cEEEeCCcccHHHHHHHH
Confidence            33467899999999987 899999999984  58999999999999888876    35 2  111211  11111 111 


Q ss_pred             -CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 -KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 -dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ....||+||-.+..      .. +....+.|+|||+++.-.
T Consensus       209 ~~~~g~Dvvid~~g~------~~-~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          209 TNGIGADAAIDSIGG------PD-GNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             TTTSCEEEEEESSCH------HH-HHHHHHTEEEEEEEEECC
T ss_pred             hCCCCCcEEEECCCC------hh-HHHHHHHhcCCCEEEEEe
Confidence             11369999875332      11 233457999999998854

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.64  E-value=0.0067  Score=60.61  Aligned_cols=91  Identities=19%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCc--EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKST--HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga--~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++|..||+|.+|.+-. .+++   .|.  +|+++|.+++.++.++    +.| ..+  . ...|..+.  ...+.|+||
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~---~G~~~~V~~~dr~~~~~~~a~----~~G-~~~--~-~~~~~~~~--~~~~aDvVi   99 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR---SGFKGKIYGYDINPESISKAV----DLG-IID--E-GTTSIAKV--EDFSPDFVM   99 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH---TTCCSEEEEECSCHHHHHHHH----HTT-SCS--E-EESCTTGG--GGGCCSEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh---CCCCCEEEEEECCHHHHHHHH----HCC-Ccc--h-hcCCHHHH--hhccCCEEE
Confidence            37999999999887743 3433   355  8999999999887765    346 211  1 22333220  134689999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ++.-.   .....++.++.+.++||.+|+-
T Consensus       100 lavp~---~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          100 LSSPV---RTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ECSCG---GGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EeCCH---HHHHHHHHHHhhccCCCcEEEE
Confidence            97544   4567899999999999887653

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.63  E-value=0.0021  Score=65.42  Aligned_cols=143  Identities=10%  Similarity=0.055  Sum_probs=78.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccCCCCcceE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGEYDCI  207 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FDvV  207 (535)
                      +.++++|+|+||||+|+|-..+-+  .+-..|+|+|+.......++ .+...| . +.+.+.++ |+..+  ....||+|
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~--~gv~sV~Gvdlg~~~~~~P~-~~~~~~-~-~iv~~~~~~di~~l--~~~~~DlV  151 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQ--KEVMSVKGYTLGIEGHEKPI-HMQTLG-W-NIVKFKDKSNVFTM--PTEPSDTL  151 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCC-CCCBTT-G-GGEEEECSCCTTTS--CCCCCSEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHh--cCCceeeeEEeccccccccc-cccccC-C-ceEEeecCceeeec--CCCCcCEE
Confidence            368999999999999999765532  34457999999754211000 001122 1 22344333 33222  22469999


Q ss_pred             Eecccc--CC--hhhH--HHHHHHHHhhcccC-eEEEEEccc--ccccccCCCCcccc-CCcEEEEEEcCCC--cceeee
Q 041205          208 ILAALA--GN--EEEK--AKILGHIRKYMKEG-GVLLVRSAK--GARAFLYPVVEHEL-FDFKVLSIFHPTN--DVINSV  275 (535)
Q Consensus       208 fiaALV--gm--~edK--~~VL~eL~rvLKPG-GvLVvRsa~--GlR~fLYP~Vdpdl-~GFeil~v~hP~~--eVINSV  275 (535)
                      +.|..-  |.  ....  ..+|+-+.++|+|| |.|++.-..  |-..   ..+-..+ .-|..+.+..|..  +-.-.+
T Consensus       152 lsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~---~~ll~~lk~~F~~V~~~KPaSR~~S~E~Y  228 (300)
T 3eld_A          152 LCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDV---IEKLERLQLRFGGGIVRVPFSRNSTHEMY  228 (300)
T ss_dssp             EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHH---HHHHHHHHHHHCCEEECCTTSCTTCCCEE
T ss_pred             eecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccH---HHHHHHHHHhCCcEEEEeCCCCCCChHHe
Confidence            987433  32  1221  34577778999999 999997654  3100   0000011 3466666777822  222336


Q ss_pred             EEEecC
Q 041205          276 VLLQLP  281 (535)
Q Consensus       276 VvARK~  281 (535)
                      ++.+..
T Consensus       229 ~V~~~r  234 (300)
T 3eld_A          229 YISGAR  234 (300)
T ss_dssp             EESSCC
T ss_pred             eeccCC
Confidence            666653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.63  E-value=0.0017  Score=65.27  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CCC-CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          128 GVA-QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~-~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ++. ++++||-+|+|++|..++.+|+.  .|++|+++|.+++..+.+++   ++| . + ..+-..+...+....+.+|+
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~---~lG-a-~-~v~~~~~~~~~~~~~~~~D~  254 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKA--FGSKVTVISTSPSKKEEALK---NFG-A-D-SFLVSRDQEQMQAAAGTLDG  254 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHH---TSC-C-S-EEEETTCHHHHHHTTTCEEE
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---hcC-C-c-eEEeccCHHHHHHhhCCCCE
Confidence            456 89999999999999999999994  58899999999988776552   456 2 1 11211121111111246999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||-.....      ..++...+.|++||+++.-.
T Consensus       255 vid~~g~~------~~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          255 IIDTVSAV------HPLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEECCSSC------CCSHHHHHHEEEEEEEEECC
T ss_pred             EEECCCcH------HHHHHHHHHHhcCCEEEEEc
Confidence            99654331      12446677899999988754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.62  E-value=0.0011  Score=65.76  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             hCCCCCCEEEEEccC-CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc--c-cccCC-
Q 041205          127 TGVAQLKKVAFVGSG-PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM--E-VKEKL-  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSG-plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~--e-l~~dL-  201 (535)
                      ..+.++++||-+|+| ++|..++.+|+. ..|++|+++|.+++..+.+++    +| .  ...+-..|..  + +.... 
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~-~~Ga~Vi~~~~~~~~~~~~~~----~g-~--~~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKR----AG-A--DYVINASMQDPLAEIRRITE  237 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHH----HT-C--SEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----hC-C--CEEecCCCccHHHHHHHHhc
Confidence            456889999999998 889999999884 238999999999999887765    35 2  1112111110  0 11111 


Q ss_pred             -CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 -GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 -~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       +.+|+||-.+..      ...++...+.|+|||++++-.
T Consensus       238 ~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          238 SKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred             CCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence             369999875433      346788899999999998743

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.58  E-value=0.0018  Score=64.37  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---cCC
Q 041205          126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---EKL  201 (535)
Q Consensus       126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---~dL  201 (535)
                      ...+.++++||-+| +|++|..++.+|+.  .|++|+++ .+++..+.+++    +| ... |. ...|..+..   ...
T Consensus       145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~--~Ga~Vi~~-~~~~~~~~~~~----lG-a~~-i~-~~~~~~~~~~~~~~~  214 (343)
T 3gaz_A          145 RAQVQDGQTVLIQGGGGGVGHVAIQIALA--RGARVFAT-ARGSDLEYVRD----LG-ATP-ID-ASREPEDYAAEHTAG  214 (343)
T ss_dssp             TTCCCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEE-ECHHHHHHHHH----HT-SEE-EE-TTSCHHHHHHHHHTT
T ss_pred             hcCCCCCCEEEEecCCCHHHHHHHHHHHH--CCCEEEEE-eCHHHHHHHHH----cC-CCE-ec-cCCCHHHHHHHHhcC
Confidence            34568899999999 89999999999994  68999999 88888776654    56 221 22 111111111   111


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..||+||-.+  |   .  ..+....+.|+|||.+++-.
T Consensus       215 ~g~D~vid~~--g---~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          215 QGFDLVYDTL--G---G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             SCEEEEEESS--C---T--HHHHHHHHHEEEEEEEEESC
T ss_pred             CCceEEEECC--C---c--HHHHHHHHHHhcCCeEEEEc
Confidence            3699998643  3   1  36788888999999998743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.56  E-value=0.021  Score=47.92  Aligned_cols=96  Identities=20%  Similarity=0.125  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDv  206 (535)
                      .+++|+.+|+|.+|........  ..|..|+.+|.+++.++..++   ..|     +.++.+|..+..    .....+|+
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~--~~g~~v~~~d~~~~~~~~~~~---~~~-----~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EID-----ALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HCS-----SEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---hcC-----cEEEEcCCCCHHHHHHcCcccCCE
Confidence            3579999999987766544333  257899999999987654332   234     456778765321    12457999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++....   ......+..+.+.+.++. ++++.
T Consensus        73 vi~~~~~---~~~~~~~~~~~~~~~~~~-ii~~~  102 (140)
T 1lss_A           73 YIAVTGK---EEVNLMSSLLAKSYGINK-TIARI  102 (140)
T ss_dssp             EEECCSC---HHHHHHHHHHHHHTTCCC-EEEEC
T ss_pred             EEEeeCC---chHHHHHHHHHHHcCCCE-EEEEe
Confidence            9986433   233445666677788864 44443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.55  E-value=0.028  Score=56.55  Aligned_cols=106  Identities=10%  Similarity=0.089  Sum_probs=76.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEEEccccc-ccc-------CC
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME-VKE-------KL  201 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi~GDA~e-l~~-------dL  201 (535)
                      ....|+.+||| ++..+..+..  ..+++|+-|| .|+.++..++++...|. -..+..++.+|..+ +..       +.
T Consensus       102 g~~QvV~LGaG-lDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~  177 (310)
T 2uyo_A          102 GIRQFVILASG-LDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP  177 (310)
T ss_dssp             TCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             CCCeEEEeCCC-CCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCC
Confidence            45789999999 8888766642  2468999999 79999999999987552 24678899999865 111       11


Q ss_pred             CCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.--++++.++.+ + .++-..+++.+.....||+.|++..
T Consensus       178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~  218 (310)
T 2uyo_A          178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  218 (310)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            1223444444443 3 5667789999999889999999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.55  E-value=0.0025  Score=62.79  Aligned_cols=101  Identities=15%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             HhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc---cccccccC
Q 041205          125 ENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC---DIMEVKEK  200 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G---DA~el~~d  200 (535)
                      ....+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++   ++| .  ...+-..   |..+....
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~---~~g-~--~~~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKM--MGCYVVGSAGSKEKVDLLKT---KFG-F--DDAFNYKEESDLTAALKR  220 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH---TSC-C--SEEEETTSCSCSHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---HcC-C--ceEEecCCHHHHHHHHHH
Confidence            3346788999999996 9999999999984  58999999999988877652   345 2  1112111   11111110


Q ss_pred             --CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 --LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 --L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .+.+|+||-.+  |   .  ..+....+.|+|||++++-.
T Consensus       221 ~~~~~~d~vi~~~--g---~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          221 CFPNGIDIYFENV--G---G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             HCTTCEEEEEESS--C---H--HHHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCcEEEECC--C---H--HHHHHHHHHHhcCCEEEEEc
Confidence              13699998653  2   1  37888899999999998743

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.55  E-value=0.001  Score=66.28  Aligned_cols=104  Identities=7%  Similarity=-0.057  Sum_probs=65.6

Q ss_pred             hCCCCC-CEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE---cccccccc--
Q 041205          127 TGVAQL-KKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT---CDIMEVKE--  199 (535)
Q Consensus       127 ~~l~~p-kRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~---GDA~el~~--  199 (535)
                      ..+.++ ++||-+|+ |++|..++.+|+.  .|++|+++..+++..+..++.++++| ...-+....   .|..+...  
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~~~~lG-a~~vi~~~~~~~~~~~~~i~~~  238 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELG-ATQVITEDQNNSREFGPTIKEW  238 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHT-CSEEEEHHHHHCGGGHHHHHHH
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHH--CCCEEEEEecCccccHHHHHHHHhcC-CeEEEecCccchHHHHHHHHHH
Confidence            456788 99999997 9999999999994  58899999877664333334445677 221111110   12111111  


Q ss_pred             ---CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 ---KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 ---dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ....||+||-...-      .... ...+.|++||+++.-.
T Consensus       239 t~~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          239 IKQSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEECC
T ss_pred             hhccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEec
Confidence               12369999864322      2233 6678999999998743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.55  E-value=0.0019  Score=63.62  Aligned_cols=99  Identities=14%  Similarity=0.039  Sum_probs=68.2

Q ss_pred             hhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-cc--c
Q 041205          126 NTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VK--E  199 (535)
Q Consensus       126 ~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~--~  199 (535)
                      ...+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-..  |..+ +.  .
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARH--LGATVIGTVSTEEKAETARK----LG-C--HHTINYSTQDFAEVVREIT  210 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HT-C--SEEEETTTSCHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C--CEEEECCCHHHHHHHHHHh
Confidence            34568899999999 59999999999984  58999999999988887765    35 2  1111111  1111 10  0


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+||-.+..       ..++...+.|+|||+++.-.
T Consensus       211 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          211 GGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence            11359999865321       45778888999999988754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.54  E-value=0.02  Score=59.70  Aligned_cols=105  Identities=9%  Similarity=-0.092  Sum_probs=70.1

Q ss_pred             CCEEEEEccCCChhhHHHHHh------h---------cCCCcEEEEEeCC-----------hhHHHHHHHHHhhcCCcCC
Q 041205          132 LKKVAFVGSGPMPLTSIILAS------Q---------HMKSTHFDNIDID-----------ETANNLARRIVSSDDEIEK  185 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk------~---------~l~Ga~VtGIDID-----------peAIelAR~li~~lG~Ls~  185 (535)
                      +.+|+|+|||.+|.|.+.+..      .         ..|..+|..-|+-           +...+..++   ..| -..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g-~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENG-RKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTC-CCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hcc-CCC
Confidence            689999999998888776654      0         1355778888887           554443322   233 122


Q ss_pred             CeEEEEccccc---cccCCCCcceEEeccccCC---hhhH---------------------H---------------HHH
Q 041205          186 RMKFLTCDIME---VKEKLGEYDCIILAALAGN---EEEK---------------------A---------------KIL  223 (535)
Q Consensus       186 rI~Fi~GDA~e---l~~dL~~FDvVfiaALVgm---~edK---------------------~---------------~VL  223 (535)
                      +--|+.|....   -+++.+.||+||..+.+||   .++.                     .               .+|
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45788887654   3445578999998888876   2200                     1               226


Q ss_pred             HHHHhhcccCeEEEEEc
Q 041205          224 GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       224 ~eL~rvLKPGGvLVvRs  240 (535)
                      +..++.|+|||++++-.
T Consensus       209 ~~Ra~eL~pGG~mvl~~  225 (384)
T 2efj_A          209 RIHSEELISRGRMLLTF  225 (384)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEE
Confidence            77799999999999865

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.51  E-value=0.0045  Score=61.82  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccCCCCcce
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGEYDC  206 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FDv  206 (535)
                      .+.++++|+|+||+|+|.|-.+...  ....+|.|+|+-+.--+.- .+++..| . +.|+|.++ |+..++.  ..||.
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~--~g~~~V~avdvG~~ghe~P-~~~~s~g-w-n~v~fk~gvDv~~~~~--~~~Dt  147 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGL--KKVTEVRGYTKGGPGHEEP-VPMSTYG-W-NIVKLMSGKDVFYLPP--EKCDT  147 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCC-CCCCCTT-T-TSEEEECSCCGGGCCC--CCCSE
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHh--cCCCEEEEEecCCCCccCc-chhhhcC-c-CceEEEeccceeecCC--ccccE
Confidence            4578999999999999999766544  2335699999976532110 1234566 3 67999999 9865544  56999


Q ss_pred             EEeccccC--C-hhhHHH---HHHHHHhhcccCeEEEEE
Q 041205          207 IILAALAG--N-EEEKAK---ILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       207 VfiaALVg--m-~edK~~---VL~eL~rvLKPGGvLVvR  239 (535)
                      |+.|-.=.  - .-+..+   +|+-+.+.|++ |-+++.
T Consensus       148 llcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          148 LLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             EEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             EEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            99874331  1 223333   77777889998 666663

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.49  E-value=0.00092  Score=69.80  Aligned_cols=100  Identities=14%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-----------------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-----------------  192 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-----------------  192 (535)
                      .++.+|+.||.|++|..+..+++.  -|++|+++|++++..+.++++    |.     +|+..                 
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~~~l~~~~~l----Ga-----~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRPEVAEQVRSV----GA-----QWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSGGGHHHHHHT----TC-----EECCCC-------------CHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHc----CC-----eEEeccccccccccchhhhhHH
Confidence            378999999999999999999884  589999999999988877653    41     22211                 


Q ss_pred             ----cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          193 ----DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       193 ----DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                          +..++...+..+|+|+...++.-...+.-+-+++.+.||||++|+--.
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence                011122233679999986554210111123467888999998776543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.49  E-value=0.0016  Score=65.14  Aligned_cols=98  Identities=11%  Similarity=-0.017  Sum_probs=67.7

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-ccc--C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~~--d  200 (535)
                      ..+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.++++    | .  ...+-..  |..+ +..  .
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~~----g-~--~~~~~~~~~~~~~~~~~~~~  228 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRM--AGAIPLVTAGSQKKLQMAEKL----G-A--AAGFNYKKEDFSEATLKFTK  228 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH----T-C--SEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc----C-C--cEEEecCChHHHHHHHHHhc
Confidence            4568899999999 79999999999984  689999999999988887543    5 2  1111111  1111 111  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+||-.+..   +    .+....+.|++||++++-.
T Consensus       229 ~~~~d~vi~~~G~---~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          229 GAGVNLILDCIGG---S----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TSCEEEEEESSCG---G----GHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCc---h----HHHHHHHhccCCCEEEEEe
Confidence            1359999875432   1    4677788999999998754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.48  E-value=0.0079  Score=61.57  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc-cccccccCCCCcc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGEYD  205 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FD  205 (535)
                      .+.++.+|+|+||+|+|+|-.+...   .| ..|.|+|+-..--+.- .++..+| . +.|.|..+ |+..+..  ..+|
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~---~gv~~V~avdvG~~~he~P-~~~~ql~-w-~lV~~~~~~Dv~~l~~--~~~D  162 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQ---KRVQEVRGYTKGGPGHEEP-QLVQSYG-W-NIVTMKSGVDVFYRPS--ECCD  162 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTC---TTEEEEEEECCCSTTSCCC-CCCCBTT-G-GGEEEECSCCTTSSCC--CCCS
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhh---cCCCEEEEEEcCCCCccCc-chhhhcC-C-cceEEEeccCHhhCCC--CCCC
Confidence            3578899999999999999766544   44 4699999976521000 0123555 3 45899998 8766554  4699


Q ss_pred             eEEeccccC--C-hhhHH---HHHHHHHhhcccC-eEEEEE
Q 041205          206 CIILAALAG--N-EEEKA---KILGHIRKYMKEG-GVLLVR  239 (535)
Q Consensus       206 vVfiaALVg--m-~edK~---~VL~eL~rvLKPG-GvLVvR  239 (535)
                      +|++|-.-.  - .-+..   ++|+-+.+.|++| |-+++.
T Consensus       163 ~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          163 TLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            999885431  1 22333   3777778999998 888874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.43  E-value=0.0023  Score=64.98  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=66.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++++|+-+|+|++|..++.+++.  .|++|+.+|++++..+.+++....      .+..+..+..++.....++|+|+..
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence            45999999999999999998884  578999999999988877765422      2222222211222223469999976


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+......-+.+...+.|+|||+++.-.
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            655321111112345667899999887644

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.40  E-value=0.0014  Score=68.95  Aligned_cols=100  Identities=20%  Similarity=0.281  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-------------c--
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-------------I--  194 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-------------A--  194 (535)
                      -++.+|+.||+|++|..+..+|+.  -|++|+.+|++++..+.++++    |.     +|+..+             +  
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~~~l~~~~~~----G~-----~~~~~~~~~~~d~~~~~~ya~e  256 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRPAAKEQVASL----GA-----KFIAVEDEEFKAAETAGGYAKE  256 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSTTHHHHHHHT----TC-----EECCCCC---------------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHc----CC-----ceeecccccccccccccchhhh
Confidence            368999999999999999999884  589999999999998877653    31     111110             0  


Q ss_pred             ----------cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 ----------MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 ----------~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                                ..+.......|+|+...++.-...+.-+-+++.+.||||++|+=-.
T Consensus       257 ~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          257 MSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             --CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             cchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence                      0111122468999986554211111223468888999998876544

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.38  E-value=0.0031  Score=63.13  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             hhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccc-cc--c
Q 041205          126 NTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIME-VK--E  199 (535)
Q Consensus       126 ~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~e-l~--~  199 (535)
                      ...+.++++||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-..  |..+ +.  .
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g-a--~~~~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQ----NG-A--HEVFNHREVNYIDKIKKYV  235 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-C--SEEEETTSTTHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCChhHHHHHHH----cC-C--CEEEeCCCchHHHHHHHHc
Confidence            345688999999996 9899999999984  68999999999998876654    45 2  1111111  1111 10  1


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....+|+||-.+..       ..+....+.|+|||+++.-.
T Consensus       236 ~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          236 GEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             CTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence            11369999875332       24678889999999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.36  E-value=0.0026  Score=64.68  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -++++|+-+|+|++|..+..++..  .|++|+.+|.+++..+.+++.   .|   ..+.....+..++......+|+|+.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~~~~~~~~~~~---~g---~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALG--MGAQVTILDVNHKRLQYLDDV---FG---GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH---TT---TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHh---cC---ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            356999999999999998888873  688999999999887665532   34   2232222222222222246899987


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.........-+.+...+.|+|||+++.-.
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            6554210011113567788899999887644

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.36  E-value=0.0031  Score=63.17  Aligned_cols=99  Identities=16%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-----ccccccCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-----IMEVKEKL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-----A~el~~dL  201 (535)
                      ..+.++++||-+|+|++|+.++.+|+. ..|++|+++|.+++..+.+++    +| . +. .+-..+     +.++. .-
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~----lG-a-~~-vi~~~~~~~~~v~~~~-~g  252 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LG-A-DH-VVDARRDPVKQVMELT-RG  252 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TT-C-SE-EEETTSCHHHHHHHHT-TT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hC-C-CE-EEeccchHHHHHHHHh-CC
Confidence            566889999999999999999999994 338899999999998887764    56 2 11 111111     11111 11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..||+||-....    .....+....+.  +||+++.-.
T Consensus       253 ~g~Dvvid~~G~----~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          253 RGVNVAMDFVGS----QATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             CCEEEEEESSCC----HHHHHHGGGGEE--EEEEEEECC
T ss_pred             CCCcEEEECCCC----chHHHHHHHhhc--CCCEEEEEe
Confidence            269999865332    111156666665  999888753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.33  E-value=0.0095  Score=58.01  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------C-CcC--------CCeEEEEcccc
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------D-EIE--------KRMKFLTCDIM  195 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G-~Ls--------~rI~Fi~GDA~  195 (535)
                      -++|..||+|.+|.+-.....  ..|.+|+.+|++++.++.+++.+.+.       | .+.        .++++ ..|..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTA--FHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            369999999998876433322  25889999999999999888764321       1 011        12333 23332


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +   ...+.|+|+.+..- ..+.|..++.++.+.++||.+|+..+
T Consensus        81 ~---~~~~aDlVi~av~~-~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           81 Q---AVKDADLVIEAVPE-SLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             H---HTTTCSEEEECCCS-CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             H---HhccCCEEEEeccC-cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            2   23578999986322 13478999999999999998876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.02  Score=49.10  Aligned_cols=95  Identities=9%  Similarity=0.073  Sum_probs=63.3

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvV  207 (535)
                      .++|+-+|+|.+|........  ..|..|+++|.|++.++.++.    .|     +.++.+|+.+...    ...++|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~--~~g~~V~~id~~~~~~~~~~~----~~-----~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELT--AAGKKVLAVDKSKEKIELLED----EG-----FDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH----TT-----CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH----CC-----CcEEECCCCCHHHHHhCCcccCCEE
Confidence            468999999987776544433  258899999999998776653    34     4788899875321    23569999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-   .+....+....+.+. ...++.+..
T Consensus        75 i~~~~~---~~~n~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           75 LITGSD---DEFNLKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             EECCSC---HHHHHHHHHHHHHHC-CCCEEEEES
T ss_pred             EEecCC---HHHHHHHHHHHHHhC-CceEEEEEc
Confidence            875432   233444555556666 666766654

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.31  E-value=0.0021  Score=62.87  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             EEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcceEEec
Q 041205          134 KVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDCIILA  210 (535)
Q Consensus       134 RVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDvVfia  210 (535)
                      +||-+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +| . + -.+-..+... ...  .+.+|+||-.
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a-~-~vi~~~~~~~-~~~~~~~~~d~v~d~  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHK--LGYQVAAVSGRESTHGYLKS----LG-A-N-RILSRDEFAE-SRPLEKQLWAGAIDT  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHH----HT-C-S-EEEEGGGSSC-CCSSCCCCEEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cC-C-C-EEEecCCHHH-HHhhcCCCccEEEEC
Confidence            4999997 9999999999994  58899999999999888876    45 2 1 1121111111 111  1359988753


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        +|   .  ..+....+.|+|||+++.-.
T Consensus       219 --~g---~--~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          219 --VG---D--KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             --SC---H--HHHHHHHHTEEEEEEEEECC
T ss_pred             --CC---c--HHHHHHHHHHhcCCEEEEEe
Confidence              33   1  27899999999999998854

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.26  E-value=0.0018  Score=63.52  Aligned_cols=98  Identities=9%  Similarity=0.025  Sum_probs=67.8

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--ccc-ccc--C
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--IME-VKE--K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A~e-l~~--d  200 (535)
                      ..+.++++||-+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +| .  ...+-..|  ..+ +..  .
T Consensus       136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~----~g-~--~~~~~~~~~~~~~~~~~~~~  206 (327)
T 1qor_A          136 YEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALK----AG-A--WQVINYREEDLVERLKEITG  206 (327)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HT-C--SEEEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-C--CEEEECCCccHHHHHHHHhC
Confidence            4567899999999 78899999999884  57899999999998887765    35 2  11121111  111 111  1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+||..+.       ...++.+.+.|++||+++.-.
T Consensus       207 ~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          207 GKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence            135999987543       235778888999999988754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.25  E-value=0.0021  Score=64.90  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=72.3

Q ss_pred             EEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceEEecc
Q 041205          136 AFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCIILAA  211 (535)
Q Consensus       136 LeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvVfiaA  211 (535)
                      +|=|||.+|+-++   +   .+.+++-+|.++++++.=+++++..    ++++++++|+.....    ....||+||+|-
T Consensus        98 lfaGSGaLgiEaL---S---~~d~~vfvE~~~~a~~~L~~Nl~~~----~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           98 YYPGSPYFAINQL---R---SQDRLYLCELHPTEYNFLLKLPHFN----KKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             EEECHHHHHHHHS---C---TTSEEEEECCSHHHHHHHTTSCCTT----SCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             EeCCcHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHHhCcC----CcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            6777775444432   2   4679999999999999988888652    589999999876443    223599999996


Q ss_pred             ccCChhhHHHHHHHHHh--hcccCeEEEEEcccccccccCCCCcc
Q 041205          212 LAGNEEEKAKILGHIRK--YMKEGGVLLVRSAKGARAFLYPVVEH  254 (535)
Q Consensus       212 LVgm~edK~~VL~eL~r--vLKPGGvLVvRsa~GlR~fLYP~Vdp  254 (535)
                      -.+...+..++++.+.+  .+.|+|++++         +||.++.
T Consensus       168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~---------WYPi~~~  203 (283)
T 2oo3_A          168 SYERKEEYKEIPYAIKNAYSKFSTGLYCV---------WYPVVNK  203 (283)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHCTTSEEEE---------EEEESSH
T ss_pred             CCCCCcHHHHHHHHHHHhCccCCCeEEEE---------EEeccch
Confidence            55433577777777765  4678888877         6776543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.25  E-value=0.025  Score=58.12  Aligned_cols=143  Identities=18%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             CCCCCEEEEEcc----CCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          129 VAQLKKVAFVGS----GPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       129 l~~pkRVLeIGS----GplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      +..+++||++|+    |.-|.| ..+.+ ..| |+.|+++|+.+-.         ...    . .|++||..++.. .+.
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS-~VLr~-~~p~g~~VVavDL~~~~---------sda----~-~~IqGD~~~~~~-~~k  169 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT-AVLRQ-WLPTGTLLVDSDLNDFV---------SDA----D-STLIGDCATVHT-ANK  169 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHH-HSCTTCEEEEEESSCCB---------CSS----S-EEEESCGGGEEE-SSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH-HHHHH-hCCCCcEEEEeeCcccc---------cCC----C-eEEEcccccccc-CCC
Confidence            467899999996    334666 34544 456 4799999998743         111    2 569999866443 367


Q ss_pred             cceEEecccc---CC--hh------hHHHHHHHHHhhcccCeEEEEEcccccccccCCCCccccCCcEEEEEEcCCC--c
Q 041205          204 YDCIILAALA---GN--EE------EKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEHELFDFKVLSIFHPTN--D  270 (535)
Q Consensus       204 FDvVfiaALV---gm--~e------dK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdpdl~GFeil~v~hP~~--e  270 (535)
                      ||+|+.|-.-   |.  ..      =-+.+++-+.++|+|||.|++.-.+|-.   +..+.....-|..+....|..  +
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg---~~~L~~lrk~F~~VK~fK~ASRa~  246 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW---NADLYKLMGHFSWWTAFVTNVNAS  246 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC---CHHHHHHHTTEEEEEEEEEGGGTT
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC---HHHHHHHHhhCCeEEEECCCCCCC
Confidence            9999987332   32  11      1345566678899999999999877732   111111225677765553322  2


Q ss_pred             ceeeeEEEecCCCCCccccccc
Q 041205          271 VINSVVLLQLPKDPPKLVLKDK  292 (535)
Q Consensus       271 VINSVVvARK~~~~~~l~l~~g  292 (535)
                      -.-.+++++.-+.. .-..+.|
T Consensus       247 SsEvYLVG~gfKg~-~~~~idg  267 (344)
T 3r24_A          247 SSEAFLIGANYLGK-PKEQIDG  267 (344)
T ss_dssp             SSCEEEEEEEECSS-CSSCCCH
T ss_pred             CeeEEEEeeeccCC-Cceeecc
Confidence            23347777643322 2335666

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.23  E-value=0.013  Score=62.37  Aligned_cols=100  Identities=23%  Similarity=0.255  Sum_probs=69.8

Q ss_pred             CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEcccc
Q 041205          132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCDIM  195 (535)
Q Consensus       132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GDA~  195 (535)
                      -++|..||+|.+|.+ +..+++   .|..|+.+|++++.++.+++.+.+       .|.+.        .+|++. .|. 
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-   79 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS---HGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-   79 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-
Confidence            468999999998876 445555   578999999999999998775432       22110        145442 232 


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ....+.|+|+.+ ......-|..++.++.+.++||.+|+...
T Consensus        80 ---~~~~~aDlVIeA-Vpe~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           80 ---HALAAADLVIEA-ASERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             ---GGGGGCSEEEEC-CCCCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---HHhcCCCEEEEc-CCCcHHHHHHHHHHHHHhhccCcEEEecC
Confidence               134568999986 33223467899999999999999887644

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.19  E-value=0.0099  Score=59.52  Aligned_cols=93  Identities=20%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh---hHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE---TANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp---eAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~~FDvV  207 (535)
                      +++||-+|+|++|..++.+|+.  .|++|+++|.++   +..+.+++    +| . +.+. .. |..+ +......+|+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~~~~----~g-a-~~v~-~~-~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRT--YGLEVWMANRREPTEVEQTVIEE----TK-T-NYYN-SS-NGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHH--HTCEEEEEESSCCCHHHHHHHHH----HT-C-EEEE-CT-TCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCccchHHHHHHHH----hC-C-ceec-hH-HHHHHHHHhCCCCCEE
Confidence            8999999999999999999984  578999999998   77766654    46 2 1111 00 1111 11001469999


Q ss_pred             EeccccCChhhHHHHH-HHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKIL-GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL-~eL~rvLKPGGvLVvRs  240 (535)
                      |-.+..      ...+ +...+.|++||.++.-.
T Consensus       251 id~~g~------~~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          251 IDATGA------DVNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EECCCC------CTHHHHHHGGGEEEEEEEEECS
T ss_pred             EECCCC------hHHHHHHHHHHHhcCCEEEEEe
Confidence            975443      1245 88889999999988754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.19  E-value=0.025  Score=56.78  Aligned_cols=106  Identities=12%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCcCCCeEEEEc-cccccccCCCCcc
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEIEKRMKFLTC-DIMEVKEKLGEYD  205 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~Ls~rI~Fi~G-DA~el~~dL~~FD  205 (535)
                      +.++++|+|+||+|+|.|-. .++ ...-..|.|.++-.+- .  ..-+..  .| + +-++|.+| |..++.  ...||
T Consensus        71 ikpg~~VVDLGaAPGGWSQv-Aa~-~~~vg~V~G~vig~D~-~--~~P~~~~~~G-v-~~i~~~~G~Df~~~~--~~~~D  141 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYY-AAT-MKNVQEVRGYTKGGPG-H--EEPMLMQSYG-W-NIVTMKSGVDVFYKP--SEISD  141 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHH-HTT-STTEEEEEEECCCSTT-S--CCCCCCCSTT-G-GGEEEECSCCGGGSC--CCCCS
T ss_pred             CCCCCEEEEcCCCCCHHHHH-Hhh-hcCCCCceeEEEcccc-c--cCCCcccCCC-c-eEEEeeccCCccCCC--CCCCC
Confidence            47899999999999888854 334 1111233444443320 0  000000  12 1 22366657 987632  23699


Q ss_pred             eEEecccc--CC-hhhHH---HHHHHHHhhcccCe-EEEEEcccc
Q 041205          206 CIILAALA--GN-EEEKA---KILGHIRKYMKEGG-VLLVRSAKG  243 (535)
Q Consensus       206 vVfiaALV--gm-~edK~---~VL~eL~rvLKPGG-vLVvRsa~G  243 (535)
                      +|+.|..-  |. .-|-.   .+|+-+.++|+||| -|++.-.+|
T Consensus       142 vVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          142 TLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             EEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            99987432  33 22222   25767778999999 999876554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.17  E-value=0.0074  Score=60.76  Aligned_cols=97  Identities=8%  Similarity=0.030  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCCcce
Q 041205          130 AQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~FDv  206 (535)
                      .++++||-+|+ |++|..++.+|+.  .|++|+++. +++..+.++    ++| ...-+.....|..+....  .+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~--~Ga~Vi~~~-~~~~~~~~~----~lG-a~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRL--SGYIPIATC-SPHNFDLAK----SRG-AEEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHH----HTT-CSEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHH--CCCEEEEEe-CHHHHHHHH----HcC-CcEEEECCCchHHHHHHHHccCCccE
Confidence            78899999999 8899999999994  688999985 888776665    456 211111111222111111  134999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhc-ccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYM-KEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvL-KPGGvLVvRs  240 (535)
                      ||-...-      ...++...+.| ++||+++.-.
T Consensus       235 v~d~~g~------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence            9864332      35677788888 6999998743

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.16  E-value=0.0026  Score=65.91  Aligned_cols=100  Identities=13%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------  194 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------  194 (535)
                      ..+.++++||-+|+ |++|+.++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|.           
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~--~Ga~vi~~~~~~~~~~~~~~----lG-a~~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALA--GGANPICVVSSPQKAEICRA----MG-AEAIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HT-CCEEEETTTTTCCSEEETTEECH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCeEEEEECCHHHHHHHHh----hC-CcEEEecCcCcccccccccccch
Confidence            45688999999998 9999999999994  68999999999998888865    45 211111101110           


Q ss_pred             -------cccc--cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 -------MEVK--EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 -------~el~--~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                             ..+.  ..-..+|+||-.  +|   .  ..+....+.|+|||++++-.
T Consensus       297 ~~~~~~~~~i~~~t~g~g~Dvvid~--~G---~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGEDIDIVFEH--PG---R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEEC--SC---H--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEc--CC---c--hhHHHHHHHhhCCcEEEEEe
Confidence                   0111  111369999864  23   1  56888889999999998743

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.16  E-value=0.0065  Score=60.63  Aligned_cols=101  Identities=10%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             HhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEE-eCChhHHHHHHHHHhhcCCcCCCeEEEEc------cccc
Q 041205          125 ENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNI-DIDETANNLARRIVSSDDEIEKRMKFLTC------DIME  196 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGI-DIDpeAIelAR~li~~lG~Ls~rI~Fi~G------DA~e  196 (535)
                      ....+.++++||-+|+ |++|..++.+|+.  .|++++++ +.++..- ..++.++++| . +.  ++..      ++.+
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~~-~~~~~~~~lG-a-~~--vi~~~~~~~~~~~~  233 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAA--LGLRTINVVRDRPDIQ-KLSDRLKSLG-A-EH--VITEEELRRPEMKN  233 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEECCCSCHH-HHHHHHHHTT-C-SE--EEEHHHHHSGGGGG
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHH--cCCEEEEEecCccchH-HHHHHHHhcC-C-cE--EEecCcchHHHHHH
Confidence            3346789999999997 9999999999994  47766554 4544321 1123445667 2 21  2221      1112


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +....+.+|+||-..  |   . ... ....+.|+|||+++.-
T Consensus       234 ~~~~~~~~Dvvid~~--g---~-~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          234 FFKDMPQPRLALNCV--G---G-KSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             TTSSSCCCSEEEESS--C---H-HHH-HHHHTTSCTTCEEEEC
T ss_pred             HHhCCCCceEEEECC--C---c-HHH-HHHHHhhCCCCEEEEE
Confidence            111112499998643  2   1 122 3577899999999875

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.13  E-value=0.01  Score=61.14  Aligned_cols=61  Identities=10%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      +++.|+|||.|++.+|..++..  ..+.+|++||+|+..+..-++.. . .   .+++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~--~~~~~vvavE~D~~l~~~L~~~~-~-~---~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKF-E-G---SPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHT-T-T---SSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhh--CCCCEEEEEecCHHHHHHHHHhc-c-C---CCEEEEECCccchh
Confidence            3689999999999999887754  23568999999999998877766 2 2   48999999997653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.13  E-value=0.007  Score=65.01  Aligned_cols=89  Identities=19%  Similarity=0.165  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|+-||+|++|......++.  .|++|+++|+++...+.|+    ..| .    ++  .+..++   +..+|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka--~Ga~Viv~d~~~~~~~~A~----~~G-a----~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKG--QGARVSVTEIDPINALQAM----MEG-F----DV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HTT-C----EE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH----HcC-C----EE--ecHHHH---HhCCCEEE
Confidence            4689999999999999999888884  5789999999998877665    346 2    22  232222   34689999


Q ss_pred             eccccCChhhHHHHH-HHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKIL-GHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL-~eL~rvLKPGGvLVvR  239 (535)
                      ......      .++ ....+.|+|||+|+.-
T Consensus       335 ~atgt~------~~i~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          335 TATGNK------DIIMLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             ECSSSS------CSBCHHHHHHSCTTCEEEEC
T ss_pred             ECCCCH------HHHHHHHHHhcCCCcEEEEe
Confidence            864321      122 2556679999998664

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.13  E-value=0.0027  Score=65.02  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE---Ec---------------
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL---TC---------------  192 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi---~G---------------  192 (535)
                      ++++|+.||+|++|..++.+|+.  .|++|+.+|++++..+.+++    +| .    ++.   ..               
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~~~~~~~~~----~G-a----~~~~i~~~~~~~~~~~~~~~~~~  239 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRAATKEQVES----LG-G----KFITVDDEAMKTAETAGGYAKEM  239 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCSTTHHHHHH----TT-C----EECCC------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C----eEEeecccccccccccccchhhc
Confidence            68999999999999999999884  57899999999988776654    34 1    111   00               


Q ss_pred             -------cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          193 -------DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       193 -------DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                             +...+......+|+|+...+....+.+.-+.++..+.|+|||+|+--.
T Consensus       240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence                   000011222468999976655210111112366777899999886544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.10  E-value=0.0072  Score=62.50  Aligned_cols=110  Identities=11%  Similarity=-0.017  Sum_probs=73.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHh-------------h-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILAS-------------Q-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk-------------~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      ..+.+|+|+||+.+|-|.+.+..             + ..|..+|..-|+-...-...-+.+...- -.++--|+.|...
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpg  128 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEES
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecch
Confidence            34688999999988777655433             0 2456788899987766554444333211 0124578888765


Q ss_pred             c---cccCCCCcceEEeccccCC---hh------------------------------hHHHHHHHHHhhcccCeEEEEE
Q 041205          196 E---VKEKLGEYDCIILAALAGN---EE------------------------------EKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       196 e---l~~dL~~FDvVfiaALVgm---~e------------------------------dK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .   -+++.+.+|+||..+.+||   .+                              |-..+|+..++.|+|||++++-
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            4   4456678999998888776   12                              1234588889999999999885


Q ss_pred             c
Q 041205          240 S  240 (535)
Q Consensus       240 s  240 (535)
                      .
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.08  E-value=0.03  Score=53.50  Aligned_cols=89  Identities=10%  Similarity=0.048  Sum_probs=59.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|..||+|.+|.+-.....  ..|.+|+++|.+++.++.++    +.| ...  . ...|..++    .+.|+|+++.-
T Consensus         1 m~i~iiG~G~~G~~~a~~l~--~~g~~V~~~~~~~~~~~~~~----~~g-~~~--~-~~~~~~~~----~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLR--RRGHYLIGVSRQQSTCEKAV----ERQ-LVD--E-AGQDLSLL----QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHH----HTT-SCS--E-EESCGGGG----TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH----hCC-CCc--c-ccCCHHHh----CCCCEEEEECC
Confidence            48999999988776443322  14679999999998876653    346 321  1 13343322    46899999633


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .   .....++..+.+.++||.+|+.
T Consensus        67 ~---~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           67 I---QLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             H---HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             H---HHHHHHHHHHHhhCCCCCEEEE
Confidence            3   4567888889888999887654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.08  E-value=0.0043  Score=63.79  Aligned_cols=100  Identities=14%  Similarity=0.037  Sum_probs=68.8

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-----------
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-----------  194 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-----------  194 (535)
                      ..+.++++||-+|+ |++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|.           
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~--~Ga~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~~~~~~~  288 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKN--GGGIPVAVVSSAQKEAAVRA----LG-CDLVINRAELGITDDIADDPRRV  288 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-CCCEEEHHHHTCCTTGGGCHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cC-CCEEEeccccccccccccccccc
Confidence            45688999999997 9999999999994  68999999999998887754    56 211111111110           


Q ss_pred             --------ccccc-CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 --------MEVKE-KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 --------~el~~-dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                              ..+.. .-..+|+||-.+..       ..+....+.|++||.++.-.
T Consensus       289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          289 VETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESC
T ss_pred             chhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEe
Confidence                    00000 01359999864321       36788888999999998854

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.07  E-value=0.002  Score=66.89  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc---------------
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM---------------  195 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~---------------  195 (535)
                      ++++|+.||+|++|..++.+|+.  .|++|+.+|.+++..+.+++    +|.     +++..|..               
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~~~~~~~~~~----lGa-----~~~~~~~~~~~~~~~g~~~~~~~  239 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEAGSGDGYAKVMSD  239 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCGGGHHHHHH----TTC-----EECCC--------CCHHHHHHSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cCC-----EEEEecccccccccccchhhccH
Confidence            68999999999999999999884  57899999999998777643    351     22211100               


Q ss_pred             --------ccccCCCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          196 --------EVKEKLGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       196 --------el~~dL~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                              .+......+|+|+...++ |. +.+.-+-++..+.|+|||+|+--.
T Consensus       240 ~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          240 AFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEc
Confidence                    111112358999987555 21 011112256677899999887644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.07  E-value=0.0059  Score=60.72  Aligned_cols=101  Identities=12%  Similarity=0.051  Sum_probs=68.6

Q ss_pred             HhhCCCCC--CEEEEEcc-CCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccccc
Q 041205          125 ENTGVAQL--KKVAFVGS-GPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVK  198 (535)
Q Consensus       125 ~~~~l~~p--kRVLeIGS-GplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~  198 (535)
                      ....+.++  ++||-.|+ |++|..++.+|+.  .|+ +|+++|.+++..+.+++   .+| .  ...+-..  |..+..
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~---~~g-~--~~~~d~~~~~~~~~~  223 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTS---ELG-F--DAAINYKKDNVAEQL  223 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH---TSC-C--SEEEETTTSCHHHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHH---HcC-C--ceEEecCchHHHHHH
Confidence            34566788  99999997 9999999999884  578 99999999988776654   245 2  1111111  111101


Q ss_pred             cC--CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EK--LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~d--L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..  .+.+|+||-.+  |     ...+....+.|++||++++-.
T Consensus       224 ~~~~~~~~d~vi~~~--G-----~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          224 RESCPAGVDVYFDNV--G-----GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHCTTCEEEEEESC--C-----HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHhcCCCCCEEEECC--C-----HHHHHHHHHHhccCcEEEEEC
Confidence            00  12699998653  3     156888899999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.05  E-value=0.042  Score=52.55  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-----C----CeEEEEccccccccCCC
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-----K----RMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-----~----rI~Fi~GDA~el~~dL~  202 (535)
                      ++|+.||+|.+|.+-.. |++   .|.+|+.+|++++.++..++.    | +.     .    ++.+.  +..++.....
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~--~~~~~~~~~~   73 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ---GGNDVTLIDQWPAHIEAIRKN----G-LIADFNGEEVVANLPIF--SPEEIDHQNE   73 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHH----C-EEEEETTEEEEECCCEE--CGGGCCTTSC
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhC----C-EEEEeCCCeeEecceee--cchhhcccCC
Confidence            68999999988766433 333   567999999999877655432    3 10     0    01111  1111111223


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|+||+.--.   ..-..+++.+.+.++||.+++.-.
T Consensus        74 ~~d~vi~~v~~---~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           74 QVDLIIALTKA---QQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CCSEEEECSCH---HHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CCCEEEEEecc---ccHHHHHHHHHHhcCCCCEEEEec
Confidence            79999996332   456778888988999988776543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.04  E-value=0.03  Score=59.70  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             CCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHh---hcCCc--------CCCeEEEEcccccc
Q 041205          131 QLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETAN-NLARRIVS---SDDEI--------EKRMKFLTCDIMEV  197 (535)
Q Consensus       131 ~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~---~lG~L--------s~rI~Fi~GDA~el  197 (535)
                      +-++|..||+|.+|.+ |..+|+   .|..|+.+|++++.. +..++.++   +.|.+        -.++++. .|.   
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl---  125 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGL---AGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF---  125 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG---
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH---
Confidence            3479999999998877 455555   588999999999821 11111221   22311        1356552 332   


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ....+.|+|+.+..- -..-|..++.++.+.++||.+|+..+
T Consensus       126 -~al~~aDlVIeAVpe-~~~vk~~v~~~l~~~~~~~aIlasnT  166 (460)
T 3k6j_A          126 -HKLSNCDLIVESVIE-DMKLKKELFANLENICKSTCIFGTNT  166 (460)
T ss_dssp             -GGCTTCSEEEECCCS-CHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             -HHHccCCEEEEcCCC-CHHHHHHHHHHHHhhCCCCCEEEecC
Confidence             235679999986332 12458899999999999999987654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0037  Score=61.33  Aligned_cols=98  Identities=11%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             CCCCCC-EEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC--CCC
Q 041205          128 GVAQLK-KVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK--LGE  203 (535)
Q Consensus       128 ~l~~pk-RVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d--L~~  203 (535)
                      .+.+++ +||-+|+ |++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....| .+....  ...
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~-~~~~~~~~~~~  216 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRV----LG-AKEVLAREDVM-AERIRPLDKQR  216 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHH----TT-CSEEEECC----------CCSCC
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHH----cC-CcEEEecCCcH-HHHHHHhcCCc
Confidence            456665 8999997 9999999999994  57899999999988887765    45 21111111111 111111  135


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+||-....       ..+....+.+++||++++-.
T Consensus       217 ~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          217 WAAAVDPVGG-------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEEEEECSTT-------TTHHHHHHTEEEEEEEEECS
T ss_pred             ccEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence            9999864322       14778888999999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.00  E-value=0.019  Score=60.35  Aligned_cols=100  Identities=20%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCc---------CCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEI---------EKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~L---------s~rI~Fi~GDA~el~~  199 (535)
                      ++|..||+|.+|.+. ..||+   .|.+|+++|+|++.++..++-...   -| +         ..++++ +.|..+.  
T Consensus         3 mkI~VIG~G~vG~~lA~~La~---~G~~V~~~D~~~~~v~~l~~g~~~i~e~g-l~~~l~~~~~~~~l~~-t~d~~ea--   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE---LGANVRCIDTDRNKIEQLNSGTIPIYEPG-LEKMIARNVKAGRLRF-GTEIEQA--   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTCSCCCSTT-HHHHHHHHHHTTSEEE-ESCHHHH--
T ss_pred             CEEEEECcCHHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHcCCCcccCCC-HHHHHHhhcccCcEEE-ECCHHHH--
Confidence            699999999888764 44555   578999999999988776551100   01 0         124554 3343322  


Q ss_pred             CCCCcceEEeccccCC-------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGN-------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm-------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ..+.|+||++---..       ......+++.+.+.+++|.+++..+
T Consensus        76 -~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           76 -VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             -GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             -HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence             246799998632210       1157888999999999999888876

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.98  E-value=0.065  Score=53.53  Aligned_cols=105  Identities=15%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ...++|.-||+|.+|.+............+|+.+|++++..+ .+..+......+...+++..++.    ..+.+.|+|+
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~----~al~~aDvVi   79 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcH----HHhCCCCEEE
Confidence            356799999999999886665542222458999999998555 24555554331223566665442    3456799999


Q ss_pred             eccccCCh-------------hhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNE-------------EEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~-------------edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.+.++..             +-+..+.+.+.++ .|+|.+++-
T Consensus        80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~  122 (316)
T 1ldn_A           80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA  122 (316)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred             EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEe
Confidence            98766421             3355666666665 488876663

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.93  E-value=0.028  Score=53.87  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC-CcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG-EYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~-~FDvVfi  209 (535)
                      ++|..||+|.+|.+-......  .|.  +|+++|.+++..+.++    ..| ...  . ...|..+   ... ..|+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~~~~~~~~~----~~g-~~~--~-~~~~~~~---~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINPESISKAV----DLG-IID--E-GTTSIAK---VEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCHHHHHHHH----HTT-SCS--E-EESCGGG---GGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCCHHHHHHHH----HCC-Ccc--c-ccCCHHH---HhcCCCCEEEE
Confidence            489999999988775443332  344  8999999999877654    346 311  1 1233322   234 6899999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +.-.   ..-..++..+.+.++||++|+.
T Consensus        69 avp~---~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           69 SSPV---RTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSCH---HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCH---HHHHHHHHHHHhhCCCCcEEEE
Confidence            6333   3445788888888999986654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.93  E-value=0.02  Score=59.70  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=71.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDv  206 (535)
                      ..++|+-+|+|.+|.........  .|..|+.||.|++.++.+++    .|     +.++.||+.+..    ......|+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~----~g-----~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHH----TT-----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHh----CC-----CeEEEcCCCCHHHHHhcCCCccCE
Confidence            45789999999888876655542  57899999999999988763    45     357889997632    13457999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++...-   .+....+-...+.+.|+..+++|.
T Consensus        72 viv~~~~---~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           72 LINAIDD---PQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEECCSS---HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEECCCC---hHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9886433   455666677778899998888886

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.92  E-value=0.051  Score=57.15  Aligned_cols=100  Identities=17%  Similarity=0.285  Sum_probs=67.7

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc------CCCeEEEEcccccc
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI------EKRMKFLTCDIMEV  197 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L------s~rI~Fi~GDA~el  197 (535)
                      -++|..||+|.+|.+-. .++.   .|..|+.+|++++.++.+++.+..       .|.+      .....+ +.|.   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~---~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~---  109 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST---  109 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH---
Confidence            46899999999886533 3333   578999999999999988764321       1100      011233 4443   


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       ....+.|+|+.+. .....-|..++.++...++||.+|+. +.
T Consensus       110 -~~~~~aDlVIeaV-pe~~~~k~~v~~~l~~~~~~~~ii~s-nT  150 (463)
T 1zcj_A          110 -KELSTVDLVVEAV-FEDMNLKKKVFAELSALCKPGAFLCT-NT  150 (463)
T ss_dssp             -GGGTTCSEEEECC-CSCHHHHHHHHHHHHHHSCTTCEEEE-CC
T ss_pred             -HHHCCCCEEEEcC-CCCHHHHHHHHHHHHhhCCCCeEEEe-CC
Confidence             2346789999863 32234578999999999999998876 44

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.85  E-value=0.05  Score=47.59  Aligned_cols=99  Identities=7%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh-hHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcce
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE-TANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDC  206 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp-eAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDv  206 (535)
                      ..+|+-+|+|.+|........  ..|..|+.||.++ +.++.....   ..   ..+.++.||+.+..    ....++|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~--~~g~~V~vid~~~~~~~~~~~~~---~~---~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQR---LG---DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHHH---HC---TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HCCCCEEEEECCChHHHHHHHHh---hc---CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            568999999987766544333  2578999999984 544333322   11   24688999987421    13567999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |++...-   .+....+....+.+.|...++++-.
T Consensus        75 vi~~~~~---d~~n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           75 ILALSDN---DADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EEECSSC---HHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEEecCC---hHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            9986433   3455666677778888888888653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.80  E-value=0.034  Score=54.40  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEc-cccccccCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTC-DIMEVKEKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FDv  206 (535)
                      ..++|+.||+|.+|.+.......  .|.  +|+.+|++++.++ .+..+..... +...+.+... |.    ....++|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~aD~   78 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDP----EICRDADM   78 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCG----GGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCChhHHHHHHHHHHhhhh-hcCCeEEEeCCCH----HHhCCCCE
Confidence            45899999999988875443321  344  8999999987765 2332222221 1123344333 32    23457999


Q ss_pred             EEeccccCCh-------------hhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGNE-------------EEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm~-------------edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |++..-....             +-...++..+.++ .|+++++.
T Consensus        79 Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~  122 (319)
T 1lld_A           79 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML  122 (319)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE
Confidence            9997633211             1122677777774 78887765

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.77  E-value=0.038  Score=53.19  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .++|..||+|.+|.+-.. +++ ...+.+|+++|.+++..+.+++    .| ...   ....|..+   ...+.|+||++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~----~g-~~~---~~~~~~~~---~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKR-DHPHYKIVGYNRSDRSRDIALE----RG-IVD---EATADFKV---FAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HCTTSEEEEECSSHHHHHHHHH----TT-SCS---EEESCTTT---TGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHh-CCCCcEEEEEcCCHHHHHHHHH----cC-Ccc---cccCCHHH---hhcCCCEEEEc
Confidence            469999999988876433 333 2236799999999988776543    45 211   12233322   22468999996


Q ss_pred             cccCChhhHHHHHHHHHhh-cccCeEEE
Q 041205          211 ALAGNEEEKAKILGHIRKY-MKEGGVLL  237 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rv-LKPGGvLV  237 (535)
                      .-.   ..-..++..+.+. ++||.+|+
T Consensus        74 vp~---~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           74 VPI---KKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             SCH---HHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CCH---HHHHHHHHHHHhcCCCCCCEEE
Confidence            333   3346788888888 88887766

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.75  E-value=0.029  Score=60.77  Aligned_cols=134  Identities=19%  Similarity=0.221  Sum_probs=84.1

Q ss_pred             ccchhhHHhHHHHHHHHHH------hhC-CCCCCEEEEEccCCChhhHHHHHhhcC---------C--CcEEEEEeC---
Q 041205          107 PYYENYVKLAKLEYGALIE------NTG-VAQLKKVAFVGSGPMPLTSIILASQHM---------K--STHFDNIDI---  165 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~------~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l---------~--Ga~VtGIDI---  165 (535)
                      .||.+.--+.+.++--+..      ... -.+.-+|||+|-| .|+..+...+...         +  .-+++++|.   
T Consensus        35 ~y~s~~~~~~e~~~vf~~~~~l~~~~~~~~~~~~~i~e~gfG-~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~  113 (676)
T 3ps9_A           35 VYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPL  113 (676)
T ss_dssp             ESSCTTTHHHHHHHHTTGGGTHHHHGGGCSSSEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred             cccCCcCHHHhhHhhhhccCChhHHHHhCCCCceEEEEeCCc-hHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCC
Confidence            4777666665544321111      110 1234699999999 5898877655320         1  246999999   


Q ss_pred             ChhHHHHH-----------HHHHhhcCC---------c---CCCeEEEEccccccccCC-----CCcceEEeccccCC-h
Q 041205          166 DETANNLA-----------RRIVSSDDE---------I---EKRMKFLTCDIMEVKEKL-----GEYDCIILAALAGN-E  216 (535)
Q Consensus       166 DpeAIelA-----------R~li~~lG~---------L---s~rI~Fi~GDA~el~~dL-----~~FDvVfiaALVgm-~  216 (535)
                      +.+-+..|           +++.+....         +   .-.+++..||+.+....+     ..||++|+|+.-.- .
T Consensus       114 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~n  193 (676)
T 3ps9_A          114 TRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKN  193 (676)
T ss_dssp             CHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGC
T ss_pred             CHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCC
Confidence            77666533           334333210         0   124567889998766654     45999999976411 1


Q ss_pred             hh--HHHHHHHHHhhcccCeEEEEEcc
Q 041205          217 EE--KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       217 ed--K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++  -..+|..+++.++|||.+...+.
T Consensus       194 p~~w~~~~~~~l~~~~~~g~~~~t~~~  220 (676)
T 3ps9_A          194 PDMWTQNLFNAMARLARPGGTLATFTS  220 (676)
T ss_dssp             GGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             hhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence            11  37899999999999999988664

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.74  E-value=0.03  Score=54.13  Aligned_cols=86  Identities=22%  Similarity=0.301  Sum_probs=58.8

Q ss_pred             CEEEEEcc-CCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGS-GPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGS-GplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|.+||+ |.+|.+-.. |++   .|.+|+.+|.+++..+..++    .| +    .+  .+..+   .....|+||++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~---~g~~V~~~~r~~~~~~~~~~----~g-~----~~--~~~~~---~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD---SAHHLAAIEIAPEGRDRLQG----MG-I----PL--TDGDG---WIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH---SSSEEEEECCSHHHHHHHHH----TT-C----CC--CCSSG---GGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHh----cC-C----Cc--CCHHH---HhcCCCEEEEc
Confidence            59999999 988766433 333   56799999999988776554    45 2    11  12222   23468999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .-.   .....+++.+.+.++||.+|+.
T Consensus        75 v~~---~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           75 LPD---NIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             SCH---HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             CCc---hHHHHHHHHHHHhCCCCCEEEE
Confidence            333   3467788888888888887665

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.74  E-value=0.062  Score=53.32  Aligned_cols=98  Identities=21%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHHH-HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANNL-ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIel-AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|.-||+|.+|.+.......  .|.  +|+.+|++++.++. +..+..... +...+++..+|.    ..+.+.|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~----~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRDEDRAQAEAEDIAHAAP-VSHGTRVWHGGH----SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHHHHHHHHTTSCC-TTSCCEEEEECG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hcCCeEEEECCH----HHhCCCCEEEE
Confidence            489999999998876655442  344  89999999986653 333333222 223455544342    23567899999


Q ss_pred             ccccCC-------------hhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGN-------------EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm-------------~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+.+..             .+-+..++..+.++ .|++.+++
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~  114 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV  114 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence            875521             01236677777776 68888776

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.74  E-value=0.064  Score=57.60  Aligned_cols=116  Identities=14%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHH--hhcCC---------CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILA--SQHMK---------STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI  194 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LA--k~~l~---------Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA  194 (535)
                      .+...++.+|+|-.||++|+-.-.+-  ..+..         ...+.|+|+++.++.+|+-+.--.| . +.-.+.++|.
T Consensus       212 l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-~-~~~~I~~~dt  289 (530)
T 3ufb_A          212 VMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-L-EYPRIDPENS  289 (530)
T ss_dssp             HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-C-SCCEEECSCT
T ss_pred             hhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-C-cccccccccc
Confidence            34447788999999998877533221  11111         2469999999999999998766566 3 3446788887


Q ss_pred             cccccC----CCCcceEEeccccCCh----------------hhHHHHHHHHHhhcc-------cCeEEEEEcccc
Q 041205          195 MEVKEK----LGEYDCIILAALAGNE----------------EEKAKILGHIRKYMK-------EGGVLLVRSAKG  243 (535)
Q Consensus       195 ~el~~d----L~~FDvVfiaALVgm~----------------edK~~VL~eL~rvLK-------PGGvLVvRsa~G  243 (535)
                      ...+..    ...||+|+..--.+..                .-...++.++.+.|+       |||++++--++|
T Consensus       290 L~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          290 LRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             TCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             ccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            643321    2359999975433320                112357888988887       699888877665

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=95.70  E-value=0.0042  Score=60.95  Aligned_cols=97  Identities=13%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             CCCCCC-EEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-cccccC--CC
Q 041205          128 GVAQLK-KVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKEK--LG  202 (535)
Q Consensus       128 ~l~~pk-RVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~d--L~  202 (535)
                      .+.+++ +||-+|+ |++|..++.+|+.  .|++|++++.+++..+.+++    +| . +.+ +-..+. .+....  ..
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lG-a-~~v-~~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQ----LG-A-SEV-ISREDVYDGTLKALSKQ  216 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHH----HT-C-SEE-EEHHHHCSSCCCSSCCC
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C-cEE-EECCCchHHHHHHhhcC
Confidence            456665 8999997 9999999999994  57899999999988887765    45 2 111 111111 111111  13


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+|+||-..  |   .  ..+....+.++|||+++.-.
T Consensus       217 ~~d~vid~~--g---~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          217 QWQGAVDPV--G---G--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CEEEEEESC--C---T--HHHHHHHTTEEEEEEEEECC
T ss_pred             CccEEEECC--c---H--HHHHHHHHhhcCCCEEEEEe
Confidence            599988643  3   1  26888899999999998754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.62  E-value=0.072  Score=53.56  Aligned_cols=102  Identities=21%  Similarity=0.260  Sum_probs=65.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ++..+|.-||+|.+|++.........-..+++-+|++++.++ .+..+..... +...+++..++-    ..+.+.|+|+
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~v~~~~~----~a~~~aDvVi   77 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGEY----SDCKDADLVV   77 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-hcCCeEEEECCH----HHhCCCCEEE
Confidence            345799999999999987665542222358999999998776 3666655543 335677765442    2356789999


Q ss_pred             eccccCChhhHH------------HHHHHHHhhc---ccCeEEEEE
Q 041205          209 LAALAGNEEEKA------------KILGHIRKYM---KEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~------------~VL~eL~rvL---KPGGvLVvR  239 (535)
                      +.+.+.   .|.            .++.++.+.+   .|+|.+++-
T Consensus        78 i~ag~~---~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  120 (318)
T 1ez4_A           78 ITAGAP---QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA  120 (318)
T ss_dssp             ECCCC-------------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             ECCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            987763   222            4444444332   688877774

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.57  E-value=0.037  Score=57.40  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHH------------HhhcCCcCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRI------------VSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~l------------i~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ++|..||+|.+|.+ +..|++   .|.+|+++|+|++.++..++-            +.+.- -..++.+ +.|..+.  
T Consensus         1 mkI~VIG~G~vG~~~A~~la~---~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~-~~g~l~~-t~~~~~~--   73 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKKA--   73 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhc-ccCceEE-eCCHHHH--
Confidence            48999999999886 445555   578999999999988765541            10000 0123544 3333221  


Q ss_pred             CCCCcceEEeccccCCh-------hhHHHHHHHHHhhccc---CeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNE-------EEKAKILGHIRKYMKE---GGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~-------edK~~VL~eL~rvLKP---GGvLVvRs  240 (535)
                       ..+.|+||++--....       ..-..+++.+.+.+++   |.+|+..+
T Consensus        74 -~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S  123 (436)
T 1mv8_A           74 -VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (436)
T ss_dssp             -HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             -hccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC
Confidence             2458999986322110       0057788999999999   87777654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.55  E-value=0.0039  Score=61.90  Aligned_cols=96  Identities=10%  Similarity=-0.002  Sum_probs=62.2

Q ss_pred             CC-CEEEEE-ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCcc
Q 041205          131 QL-KKVAFV-GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEYD  205 (535)
Q Consensus       131 ~p-kRVLeI-GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~FD  205 (535)
                      ++ ++|+-. |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....|..+.....   ..+|
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----~G-a~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKE--EGFRPIVTVRRDEQIALLKD----IG-AAHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESCGGGHHHHHH----HT-CSEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-CCEEEECCcHHHHHHHHHHhcCCCCc
Confidence            44 556544 999999999999994  58999999999999888875    45 2111111011111111111   2599


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||-.+..       ..+....+.|++||+++.-.
T Consensus       236 ~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVTG-------PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSCH-------HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCCC-------hhHHHHHhhhcCCCEEEEEe
Confidence            99864332       12477888999999998854

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.52  E-value=0.019  Score=60.82  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh---cCCc---------CCCeEEEEccccc
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS---DDEI---------EKRMKFLTCDIME  196 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---lG~L---------s~rI~Fi~GDA~e  196 (535)
                      ...++|..||+|.+|.+ +.+||+   .|.+|+++|+|++.++..++-...   -| +         ..+++| +.|..+
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~---~G~~V~~~d~~~~~v~~l~~~~~~i~e~g-l~~~l~~~~~~~~l~~-ttd~~~   80 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLAD---IGHDVFCLDVDQAKIDILNNGGVPIHEPG-LKEVIARNRSAGRLRF-STDIEA   80 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTT-HHHHHHHHHHTTCEEE-ECCHHH
T ss_pred             CCCceEEEECcCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHCCCCCcCCCC-HHHHHHHhcccCCEEE-ECCHHH
Confidence            35689999999998875 566776   578999999999988876653100   01 1         124544 233322


Q ss_pred             cccCCCCcceEEeccccC-------ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAG-------NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVg-------m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ...+.|+||+.---.       .......+++.+.+.++||.+|+..+
T Consensus        81 ---a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           81 ---AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ---HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ---HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence               123579999862210       02467888999999999999887765

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.51  E-value=0.027  Score=54.29  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=40.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      .+++.|||..||. |.|++...+   .|.+++|+|+++.+++.|++.++..|
T Consensus       211 ~~~~~vlD~f~Gs-Gtt~~~a~~---~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGS-GTTAIVAKK---LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            6889999999995 788777666   58999999999999999999998766

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.51  E-value=0.052  Score=50.26  Aligned_cols=95  Identities=8%  Similarity=-0.009  Sum_probs=65.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf  208 (535)
                      ++|+-+|+|.+|........  ..|..|+.+|.|++.++...   +..|     +.++.||+.+..    .....+|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L~--~~g~~v~vid~~~~~~~~l~---~~~~-----~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSML--SRKYGVVIINKDRELCEEFA---KKLK-----ATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHH---HHSS-----SEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHH---HHcC-----CeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            57999999987766544333  25789999999999876432   2334     478899987532    1346799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...-   .....++....+.+.|...+++|.
T Consensus        71 ~~~~~---d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           71 ILTPR---DEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             ECCSC---HHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             EecCC---cHHHHHHHHHHHHHcCCCeEEEEE
Confidence            76433   344556666777777888888876

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.49  E-value=0.033  Score=55.84  Aligned_cols=103  Identities=21%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++++|.-||+|.+|++........-...+|+.+|++++.++ .+..+..... +..++++..+|    ...+.+.|+|++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~----~~a~~~aDvVii   80 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGD----YSDVKDCDVIVV   80 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--C----GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH-hcCCeEEEECC----HHHhCCCCEEEE
Confidence            46899999999999987665542222348999999987665 3444444332 23466666444    223567899999


Q ss_pred             ccccCChhh-------------HHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEE-------------KAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~ed-------------K~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.+...+.             -..+.+.+.++ .|+|.+++-
T Consensus        81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~  122 (318)
T 1y6j_A           81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV  122 (318)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred             cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence            876632111             14455555555 689988884

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=95.49  E-value=0.0065  Score=60.44  Aligned_cols=100  Identities=11%  Similarity=0.088  Sum_probs=60.5

Q ss_pred             HhhCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CC
Q 041205          125 ENTGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KL  201 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL  201 (535)
                      ....+.++++||-+|+ |++|..++.+|+ +..+++|++++ +++..+.++     +| ...-+. ...|..+...  ..
T Consensus       136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~-~~g~~~V~~~~-~~~~~~~~~-----~g-a~~~~~-~~~~~~~~~~~~~~  206 (349)
T 4a27_A          136 EVANLREGMSVLVHSAGGGVGQAVAQLCS-TVPNVTVFGTA-STFKHEAIK-----DS-VTHLFD-RNADYVQEVKRISA  206 (349)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHT-TSTTCEEEEEE-CGGGHHHHG-----GG-SSEEEE-TTSCHHHHHHHHCT
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCcEEEEeC-CHHHHHHHH-----cC-CcEEEc-CCccHHHHHHHhcC
Confidence            3456789999999998 999999999998 34468999998 555444433     45 211111 1111111111  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||+||-...-       ..+....+.|+|||++++-.
T Consensus       207 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCc-------hhHHHHHHHhhcCCEEEEEC
Confidence            469999964322       12367889999999998754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.41  E-value=0.022  Score=58.26  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             CCCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++|.+||+|.+|.+- ..|++   .|..|+++|++++.++...    ..| .    . ...+..++.......|+||+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~---~G~~V~v~dr~~~~~~~l~----~~g-~----~-~~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK---GGHECVVYDLNVNAVQALE----REG-I----A-GARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHH----TTT-C----B-CCSSHHHHHHHSCSSCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHH----HCC-C----E-EeCCHHHHHhcCCCCCEEEE
Confidence            45899999999888763 33444   5789999999998876544    235 2    1 12344443333344699998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .--.   ..-..++..+...++||.+|+--
T Consensus        88 ~vp~---~~v~~vl~~l~~~l~~g~iiId~  114 (358)
T 4e21_A           88 MVPA---AVVDSMLQRMTPLLAANDIVIDG  114 (358)
T ss_dssp             CSCG---GGHHHHHHHHGGGCCTTCEEEEC
T ss_pred             eCCH---HHHHHHHHHHHhhCCCCCEEEeC
Confidence            5332   25677889999999998877653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.38  E-value=0.081  Score=53.43  Aligned_cols=105  Identities=18%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL-ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel-AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+.+||.-||+|.+|++...+.....-..+++-+|++++.++- +..+..... +..++++..++-    ..+.+.|+|+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~~----~a~~~aDvVi   81 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP-FTSPKKIYSAEY----SDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGGGCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH-hcCCeEEEECCH----HHhCCCCEEE
Confidence            5668999999999999876654422223589999999987643 555554433 335677765442    2346789999


Q ss_pred             eccccCChh-----hH----HHHHHHHHhhc---ccCeEEEEE
Q 041205          209 LAALAGNEE-----EK----AKILGHIRKYM---KEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~e-----dK----~~VL~eL~rvL---KPGGvLVvR  239 (535)
                      +.+.+...+     +.    ..++.++.+.+   .|+|.+++-
T Consensus        82 i~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  124 (326)
T 2zqz_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA  124 (326)
T ss_dssp             ECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            987763211     11    13444444322   688888774

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.34  E-value=0.052  Score=53.24  Aligned_cols=90  Identities=11%  Similarity=0.019  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|+.||+|.+|......++.  .|.+|+++|.+++..+.+.    ..| .    ++..  ..++...+..+|+|++
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~dr~~~~~~~~~----~~g-~----~~~~--~~~l~~~l~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAA--LGAKVKVGARESDLLARIA----EMG-M----EPFH--ISKAAQELRDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH----HTT-S----EEEE--GGGHHHHTTTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHH----HCC-C----eecC--hhhHHHHhcCCCEEEE
Confidence            468999999999998888777763  5789999999987654432    345 2    2221  1122233467999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ..-.++...      ...+.|+||++|+-
T Consensus       220 ~~p~~~i~~------~~l~~mk~~~~lin  242 (293)
T 3d4o_A          220 TIPALVVTA------NVLAEMPSHTFVID  242 (293)
T ss_dssp             CCSSCCBCH------HHHHHSCTTCEEEE
T ss_pred             CCChHHhCH------HHHHhcCCCCEEEE
Confidence            766555222      23447899987754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.30  E-value=0.033  Score=55.74  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..-++|.+||+|.+|.+ |..++    .|..|+.+|++++.++.+.+.+...-  -.++++. .|..    ...+.|+|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la----aG~~V~v~d~~~~~~~~~~~~l~~~~--~~~i~~~-~~~~----~~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA----SKHEVVLQDVSEKALEAAREQIPEEL--LSKIEFT-TTLE----KVKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH----TTSEEEEECSCHHHHHHHHHHSCGGG--GGGEEEE-SSCT----TGGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHHH--hCCeEEe-CCHH----HHcCCCEEE
Confidence            34689999999988765 23332    47799999999999998887621111  1245542 3332    245689999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.... ..-|..++.++...  ||.+++..+
T Consensus        79 eavpe~-~~vk~~l~~~l~~~--~~~Ilasnt  107 (293)
T 1zej_A           79 EAVFED-LNTKVEVLREVERL--TNAPLCSNT  107 (293)
T ss_dssp             ECCCSC-HHHHHHHHHHHHTT--CCSCEEECC
T ss_pred             EcCcCC-HHHHHHHHHHHhcC--CCCEEEEEC
Confidence            863332 34478888888775  888887654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.29  E-value=0.046  Score=53.70  Aligned_cols=90  Identities=13%  Similarity=0.025  Sum_probs=60.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|+.||+|.+|......+..  .|.+|+++|.+++..+.+.    ..| .    +....  .++...+..+|+|++
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~d~~~~~~~~~~----~~g-~----~~~~~--~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAA--LGANVKVGARSSAHLARIT----EMG-L----VPFHT--DELKEHVKDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH----HTT-C----EEEEG--GGHHHHSTTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HCC-C----eEEch--hhHHHHhhCCCEEEE
Confidence            468999999999999888777763  5789999999987654432    245 2    22211  122233467999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ....++.. +     ...+.|+||++|+-
T Consensus       222 ~~p~~~i~-~-----~~~~~mk~g~~lin  244 (300)
T 2rir_A          222 TIPSMILN-Q-----TVLSSMTPKTLILD  244 (300)
T ss_dssp             CCSSCCBC-H-----HHHTTSCTTCEEEE
T ss_pred             CCChhhhC-H-----HHHHhCCCCCEEEE
Confidence            76666522 1     23467999987754

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.22  E-value=0.086  Score=52.73  Aligned_cols=102  Identities=19%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.-||+|.+|++............+++-+|++++.++ .+..+..... +..++++..+|-    ..+.+.|+|++.+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~~~~~~v~~~~~----~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-FAHPVWVWAGSY----GDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-hcCCeEEEECCH----HHhCCCCEEEECC
Confidence            489999999999987766543223468999999998776 3666655443 335667765442    2356789999987


Q ss_pred             ccC----C-hhhH----HHHHHHHHhhc---ccCeEEEEE
Q 041205          212 LAG----N-EEEK----AKILGHIRKYM---KEGGVLLVR  239 (535)
Q Consensus       212 LVg----m-~edK----~~VL~eL~rvL---KPGGvLVvR  239 (535)
                      .+.    | ..+.    ..++.++.+.+   .|+|.+++-
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  115 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA  115 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe
Confidence            663    2 1111    33444443322   788888774

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.20  E-value=0.024  Score=59.83  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             CCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh---hcCC--------cCCCeEEEEccccccc
Q 041205          131 QLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVS---SDDE--------IEKRMKFLTCDIMEVK  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~---~lG~--------Ls~rI~Fi~GDA~el~  198 (535)
                      ..-||.+||.|-+|++ |.+||+   .|-.|+++|+|++.++.-++-..   .-|.        ...+++| +.|..+. 
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~---~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea-   81 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSD---FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEG-   81 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH-
T ss_pred             CceEEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHH-
Confidence            4579999999998876 556776   57899999999998876544100   0010        0134555 3443222 


Q ss_pred             cCCCCcceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        ..+.|+||+.---..        ...-..+++.+.+.|++|.+++..+.
T Consensus        82 --~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST  130 (446)
T 4a7p_A           82 --VKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST  130 (446)
T ss_dssp             --HTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC
T ss_pred             --HhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence              246799998621110        11367888999999999999988763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.17  E-value=0.079  Score=49.43  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=63.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FD  205 (535)
                      ...++|+-+|+|.+|........  ..|. |+.+|.|++.++.++     .|     +.++.||+.+..    .....+|
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~--~~g~-v~vid~~~~~~~~~~-----~~-----~~~i~gd~~~~~~l~~a~i~~ad   73 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELR--GSEV-FVLAEDENVRKKVLR-----SG-----ANFVHGDPTRVSDLEKANVRGAR   73 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHST--TSEE-EEEESCGGGHHHHHH-----TT-----CEEEESCTTCHHHHHHTTCTTCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHH--hCCe-EEEEECCHHHHHHHh-----cC-----CeEEEcCCCCHHHHHhcCcchhc
Confidence            34679999999876544333222  2366 999999999876554     34     578999987432    1356799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++...-   ...........+.+.|+..++++-.
T Consensus        74 ~vi~~~~~---d~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           74 AVIVDLES---DSETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             EEEECCSC---HHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             EEEEcCCC---cHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            99986433   3444555666777899888888753

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.15  E-value=0.054  Score=51.58  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=57.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|..||+|.+|..-.....  . |.+|+.+|++++..+...+.    | .  .  +..  ..+   ....+|+|++..-
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~--~-g~~V~~~~~~~~~~~~~~~~----g-~--~--~~~--~~~---~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA--R-RFPTLVWNRTFEKALRHQEE----F-G--S--EAV--PLE---RVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH--T-TSCEEEECSSTHHHHHHHHH----H-C--C--EEC--CGG---GGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh--C-CCeEEEEeCCHHHHHHHHHC----C-C--c--ccC--HHH---HHhCCCEEEEeCC
Confidence            47999999998876443333  3 77899999999877655432    5 2  1  111  112   1246899998633


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..  ..-..+++.+.+.+++|.+|+.-
T Consensus        65 ~~--~~~~~v~~~l~~~l~~~~~vv~~   89 (289)
T 2cvz_A           65 TT--REVYEVAEALYPYLREGTYWVDA   89 (289)
T ss_dssp             SH--HHHHHHHHHHTTTCCTTEEEEEC
T ss_pred             Ch--HHHHHHHHHHHhhCCCCCEEEEC
Confidence            21  12556788888889999877754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.07  E-value=0.09  Score=53.43  Aligned_cols=103  Identities=18%  Similarity=0.189  Sum_probs=71.0

Q ss_pred             CCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC---------CCeEEEEcc
Q 041205          131 QLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE---------KRMKFLTCD  193 (535)
Q Consensus       131 ~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls---------~rI~Fi~GD  193 (535)
                      ...+|.-||+|.+|-. |.++|.   .|..|+-+|+++++++.|++.+++       .|.+.         .+|++. .|
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~   80 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS---GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN   80 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence            4579999999988765 333444   689999999999999988776543       12111         134442 22


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .   ...+.+.|+|+= +...-.+-|.++|.++-++++|+.+|...+.
T Consensus        81 l---~~a~~~ad~ViE-av~E~l~iK~~lf~~l~~~~~~~aIlaSNTS  124 (319)
T 3ado_A           81 L---AEAVEGVVHIQE-CVPENLDLKRKIFAQLDSIVDDRVVLSSSSS  124 (319)
T ss_dssp             H---HHHTTTEEEEEE-CCCSCHHHHHHHHHHHHTTCCSSSEEEECCS
T ss_pred             h---HhHhccCcEEee-ccccHHHHHHHHHHHHHHHhhhcceeehhhh
Confidence            2   223456788764 3444357899999999999999999988764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.06  E-value=0.11  Score=52.77  Aligned_cols=105  Identities=17%  Similarity=0.263  Sum_probs=73.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-------------------cCCCeEEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-------------------IEKRMKFL  190 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-------------------Ls~rI~Fi  190 (535)
                      .+...|+.+||| +-..+..+... .++.+++-||. |+.++.-++++...+.                   ..++..++
T Consensus        96 ~~~~qVV~LGaG-lDTr~~RL~~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v  172 (334)
T 1rjd_A           96 NEKVQVVNLGCG-SDLRMLPLLQM-FPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLA  172 (334)
T ss_dssp             CSSEEEEEETCT-TCCTHHHHHHH-CTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEE
T ss_pred             CCCcEEEEeCCC-CccHHHHhcCc-CCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEE
Confidence            457899999999 67888888652 45778888888 9999999999887531                   13678999


Q ss_pred             Eccccccc------cCC---CCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          191 TCDIMEVK------EKL---GEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       191 ~GDA~el~------~dL---~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+|..+..      ...   +...+++...+.. + .+.-.++++.+.... |||.+++
T Consensus       173 ~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          173 ACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             ECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEE
T ss_pred             ecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEE
Confidence            99987631      111   2245555555443 2 566778888888876 6666653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.03  E-value=0.06  Score=54.87  Aligned_cols=98  Identities=11%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             CCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHh---hcCC--cCCCeEEEEccccccccCCCCcc
Q 041205          132 LKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVS---SDDE--IEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       132 pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~---~lG~--Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .++|..||+|.+|.+- ..|++   .|..|+.+|++++.++..++.-.   .++.  +..++.+ +.|..+   ...+.|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~---~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~e---a~~~aD  101 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLAR---KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKA---SLEGVT  101 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHT---TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHH---HHTTCC
T ss_pred             CCeEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHH---HHhcCC
Confidence            5799999999988763 33444   57789999999988776554311   1110  2234444 233322   224689


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++--.   .....+++.+.+.++||.+++.-
T Consensus       102 vVilaVp~---~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          102 DILIVVPS---FAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             EEEECCCH---HHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EEEECCCH---HHHHHHHHHHHHhcCCCCEEEEE
Confidence            99986322   46788899999999998876543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.99  E-value=0.11  Score=52.10  Aligned_cols=104  Identities=15%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL-ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel-AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+++|.-||+|.+|++........-...+|+.+|++++.++- +..+......+..++++..++.    ..+.+.|+|++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~----~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEY----SDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCG----GGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCH----HHhCCCCEEEE
Confidence            468999999999988866654321123589999999876652 4444333221224566665432    23467899999


Q ss_pred             ccccCChh-------------hHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEE-------------EKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~e-------------dK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.++..+             --..+...+.++ .|+|.+++-
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~  122 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVA  122 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Confidence            87663211             112233344444 789988884

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.90  E-value=0.048  Score=45.80  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--c--CCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--E--KLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~--dL~~FDvV  207 (535)
                      .++|+-+|+|.+|.........  .|.+|+.+|.+++..+..    ...|     ..++.+|..+..  .  ...++|+|
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~~~~~~~----~~~~-----~~~~~~d~~~~~~l~~~~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAY----ASYA-----THAVIANATEENELLSLGIRNFEYV   74 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHTT----TTTC-----SEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHH----HHhC-----CEEEEeCCCCHHHHHhcCCCCCCEE
Confidence            5689999999887776555442  578899999998765432    2223     356778765421  1  13569999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +......  .+....+....+.+.++ .++++.
T Consensus        75 i~~~~~~--~~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           75 IVAIGAN--IQASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             EECCCSC--HHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EECCCCc--hHHHHHHHHHHHHcCCC-eEEEEe
Confidence            9864331  13333455556667776 666554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.88  E-value=0.066  Score=53.24  Aligned_cols=92  Identities=10%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCC-cEEEEEeCChhHHHHHHH---HHhhcCCcCCCeEEEEc-cccccccCCCCcc
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKS-THFDNIDIDETANNLARR---IVSSDDEIEKRMKFLTC-DIMEVKEKLGEYD  205 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~G-a~VtGIDIDpeAIelAR~---li~~lG~Ls~rI~Fi~G-DA~el~~dL~~FD  205 (535)
                      .++|.+||+|.+|.+.. .|++   .| ..|+++|++++..+.+..   .+...| .       .. +..++.   ...|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~---~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g-~-------~~~s~~e~~---~~aD   89 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGG---RNAARLAAYDLRFNDPAASGALRARAAELG-V-------EPLDDVAGI---ACAD   89 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCSEEEEECGGGGCTTTHHHHHHHHHHTT-C-------EEESSGGGG---GGCS
T ss_pred             CCeEEEECccHHHHHHHHHHHH---cCCCeEEEEeCCCccccchHHHHHHHHHCC-C-------CCCCHHHHH---hcCC
Confidence            47999999998887643 3333   57 799999999842222222   223345 2       23 333322   4579


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||+.---   ..-.+.+..+.+.++||.+|+--+
T Consensus        90 vVi~avp~---~~~~~~~~~i~~~l~~~~ivv~~s  121 (317)
T 4ezb_A           90 VVLSLVVG---AATKAVAASAAPHLSDEAVFIDLN  121 (317)
T ss_dssp             EEEECCCG---GGHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEEecCC---HHHHHHHHHHHhhcCCCCEEEECC
Confidence            99986333   334556788999999998876544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.86  E-value=0.086  Score=51.69  Aligned_cols=99  Identities=23%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCC-cC--CCeEEEEccccccccCCCCcc
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSS--DDE-IE--KRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~-Ls--~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .++|+.||+|.+|..-. .|++   .|..|+.+|.+++.++..++....  .+. +.  .++.....|..+.   ..++|
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D   77 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDAD   77 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCS
T ss_pred             cCeEEEECCCHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCC
Confidence            47999999998876533 3333   578899999999887655443100  010 00  0110112232221   24689


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++.-.   ..-..+++.+.+.+++|.+++.-
T Consensus        78 ~vi~~v~~---~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           78 VILIVVPA---IHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEEECSCG---GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEEeCCc---hHHHHHHHHHHHhCCCCCEEEEc
Confidence            99996433   34478889999999999877665

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.83  E-value=0.1  Score=55.75  Aligned_cols=104  Identities=17%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCc-EEEEEeCChh----HHHHHHHHHh-----hcCC--------cCCCeEEE
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKST-HFDNIDIDET----ANNLARRIVS-----SDDE--------IEKRMKFL  190 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga-~VtGIDIDpe----AIelAR~li~-----~lG~--------Ls~rI~Fi  190 (535)
                      .+-++|..||+|.+|.+ |.+||+  .+|- .|+++|+|++    .++.-++-..     .-|.        ...++.+ 
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-   92 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-   92 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-
Confidence            45689999999999986 456666  1377 9999999999    7655443100     0000        0235655 


Q ss_pred             EccccccccCCCCcceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          191 TCDIMEVKEKLGEYDCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       191 ~GDA~el~~dL~~FDvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.|. +   ...+.|+||++---..         ...-....+.+.+.++||.+++..+
T Consensus        93 ttd~-e---a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  147 (478)
T 3g79_A           93 TPDF-S---RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES  147 (478)
T ss_dssp             ESCG-G---GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             eCcH-H---HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            3342 2   2346799998632211         1224567788999999999888776

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.80  E-value=0.012  Score=73.55  Aligned_cols=105  Identities=22%  Similarity=0.194  Sum_probs=54.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCC----CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc-ccCCCCc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMK----STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV-KEKLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~----Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el-~~dL~~F  204 (535)
                      .+..||||||.|+++.|.-++.. +..    -...+-.|+++...+.|++.++.+.     |+.-.-|..+. .+....|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~-l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-----i~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPAL-LNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-----VTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHH-TTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-----EEEECCCSSCCCC-----C
T ss_pred             CCCceEEEECCCccHHHHHHHHh-hcccCcccceEEEecCChHHHHHHHHHhhhcc-----cccccccccccccCCCCce
Confidence            45789999999988877766543 211    1367888999988888887776543     33311122111 1123469


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+|+....+|..++....+.++++.|+|||.+++..
T Consensus      1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             CEEEEECC--------------------CCEEEEEE
T ss_pred             eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            999987665545677889999999999999998875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.65  E-value=0.091  Score=58.59  Aligned_cols=99  Identities=22%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCc--------CCCeEEEEccccc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEI--------EKRMKFLTCDIME  196 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~L--------s~rI~Fi~GDA~e  196 (535)
                      ++|..||+|.+|.+- ..+|.   .|..|+.+|++++.++.++..++.       .|.+        ..++++. .|.  
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~--  386 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDY--  386 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSS--
T ss_pred             cEEEEEcCCHhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCH--
Confidence            579999999888653 33444   578999999999999887654321       1201        1245542 332  


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        ....+.|+|+.+- .....-|..++.++.+.++||.+|+..+
T Consensus       387 --~~~~~aDlVIeaV-pe~~~vk~~v~~~l~~~~~~~~Ilasnt  427 (725)
T 2wtb_A          387 --ESFRDVDMVIEAV-IENISLKQQIFADLEKYCPQHCILASNT  427 (725)
T ss_dssp             --GGGTTCSEEEECC-CSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             --HHHCCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence              2346789999863 3213448899999999999999886654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.63  E-value=0.12  Score=51.15  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHH-HhhcCC---cCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRI-VSSDDE---IEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~l-i~~lG~---Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++|+.||+|.+|.+-- .|++   .|..|+.+ .+++.++..++. +...+.   +..++.+ ..|.    ....++|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~---~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~----~~~~~~D   88 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLAR---AGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA-SSDP----SAVQGAD   88 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHH---TTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE-ESCG----GGGTTCS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHH---CCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee-eCCH----HHcCCCC
Confidence            368999999998886543 3444   57789999 998877766542 110010   0011111 1222    2235799


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccccc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA  244 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl  244 (535)
                      +|+++ ...  .+-..+++.+.+.++|+.+++.- ..|+
T Consensus        89 ~vila-vk~--~~~~~~l~~l~~~l~~~~~iv~~-~nGi  123 (318)
T 3hwr_A           89 LVLFC-VKS--TDTQSAALAMKPALAKSALVLSL-QNGV  123 (318)
T ss_dssp             EEEEC-CCG--GGHHHHHHHHTTTSCTTCEEEEE-CSSS
T ss_pred             EEEEE-ccc--ccHHHHHHHHHHhcCCCCEEEEe-CCCC
Confidence            99996 332  46688999999999999876654 3453

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.62  E-value=0.17  Score=50.86  Aligned_cols=100  Identities=21%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhh----cCCcCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSS----DDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~----lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      +.++|.-||+|.+|++...+...  .|- .|+.+|+|++.++.....+..    .+ ...++++ +.|.    ..+.+.|
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~-t~d~----~al~~aD   74 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVKNMPHGKALDTSHTNVMAY-SNCKVSG-SNTY----DDLAGAD   74 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSHHHHHHHHHHTHHHHHT-CCCCEEE-ECCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC-CCcEEEE-CCCH----HHhCCCC
Confidence            45799999999999875544432  343 699999999987753333332    22 2234443 2443    3346789


Q ss_pred             eEEeccccC----Ch--------------hhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAG----NE--------------EEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVg----m~--------------edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|++.+...    +.              +-+..+++.+.++. |++.+++-
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~  125 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV  125 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            999886431    11              23677778888775 88887653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.59  E-value=0.036  Score=56.58  Aligned_cols=89  Identities=11%  Similarity=0.116  Sum_probs=58.9

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVfia  210 (535)
                      .++|.+||+|.+|.+-......  .|.+|+++|.+++..+.++    ..| .    .. ..|..++... ....|+||++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~~~~a~----~~G-~----~~-~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHA--ANHSVFGYNRSRSGAKSAV----DEG-F----DV-SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHH----HTT-C----CE-ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEeecHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH----HcC-C----ee-eCCHHHHHHhcccCCCEEEEe
Confidence            4789999999988874433332  5789999999999887765    356 3    11 2343322211 1246999997


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVL  236 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvL  236 (535)
                      .-.   .....+++++... +||.+|
T Consensus        76 vP~---~~~~~vl~~l~~~-~~~~iv   97 (341)
T 3ktd_A           76 VPM---TAIDSLLDAVHTH-APNNGF   97 (341)
T ss_dssp             SCH---HHHHHHHHHHHHH-CTTCCE
T ss_pred             CCH---HHHHHHHHHHHcc-CCCCEE
Confidence            544   4667888888875 887654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.56  E-value=0.054  Score=52.96  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .++|.+||+|.+|.+-. .|++   .|..|+++|++++.++...+    .| .    .....+..+   -....|+||+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-~----~~~~~~~~e---~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLR---AGLSTWGADLNPQACANLLA----EG-A----CGAAASARE---FAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-C----SEEESSSTT---TTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH----cC-C----ccccCCHHH---HHhcCCEEEEE
Confidence            47999999998887633 3444   57899999999988776543    35 2    112333332   22468999985


Q ss_pred             cccCChhhHHHHH---HHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKIL---GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL---~eL~rvLKPGGvLVvRs  240 (535)
                      ---.  ..-..++   +.+.+.++||.+++--+
T Consensus        72 vp~~--~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           72 VVNA--AQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             CSSH--HHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             CCCH--HHHHHHHhChhhHHhhCCCCCEEEecC
Confidence            2221  1234444   66678889988876544

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.56  E-value=0.19  Score=50.00  Aligned_cols=98  Identities=19%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCc--EEEEEeCChhHHHHHHHHHh-hcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKST--HFDNIDIDETANNLARRIVS-SDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga--~VtGIDIDpeAIelAR~li~-~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|..||+|.+|.+.......  .|.  +|+.+|++++.++....-+. ... +.....+...|.    ....+.|+|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~----~~~~~aDvVii   73 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDY----ADLKGSDVVIV   73 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEeCCH----HHhCCCCEEEE
Confidence            489999999988875443321  344  89999999987765432222 111 112234433442    23467899999


Q ss_pred             ccccCChh-------------hHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEE-------------EKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~e-------------dK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +.-.+..+             -+..+++.+.++ .|++.+++
T Consensus        74 av~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~  114 (319)
T 1a5z_A           74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIV  114 (319)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEE
Confidence            76653211             146667777766 47887665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.55  E-value=0.063  Score=59.70  Aligned_cols=102  Identities=21%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh-------cCCcC--------CCeEEEEcc
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSS-------DDEIE--------KRMKFLTCD  193 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~-------lG~Ls--------~rI~Fi~GD  193 (535)
                      .+-++|..||+|.+|.+ +..+++   .|..|+.+|++++.++.++..++.       .|.+.        .++++ +.|
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~d  387 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS  387 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS
T ss_pred             ccCCEEEEECCChhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE-ECC
Confidence            34578999999988865 344555   578899999999999887553321       23110        12443 223


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .    ....+.|+|+.+- .....-|..++.++.+.++||.+|+..+
T Consensus       388 ~----~~~~~aDlVIeaV-~e~~~vk~~v~~~l~~~~~~~~Ilasnt  429 (715)
T 1wdk_A          388 Y----GDFGNVDLVVEAV-VENPKVKQAVLAEVENHVREDAILASNT  429 (715)
T ss_dssp             S----TTGGGCSEEEECC-CSCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             H----HHHCCCCEEEEcC-CCCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence            2    2345689999863 3222448889999999999999886544

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.49  E-value=0.091  Score=55.54  Aligned_cols=101  Identities=14%  Similarity=0.313  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHH------------HhhcCCcCCCeEEEEcccccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRI------------VSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~l------------i~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      ..-++|..||+|.+|.+......   .|.+|+++|+|++.++..++-            +.+ +  ..++++ +.|..+ 
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La---~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~-ttd~~e-  105 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIA---QNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K--PLNFRA-TTDKHD-  105 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH---TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S--CCCEEE-ESCHHH-
T ss_pred             cCCCEEEEECcCHHHHHHHHHHH---cCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c--cCCeEE-EcCHHH-
Confidence            34479999999998887544433   278999999999998876642            111 0  124554 334322 


Q ss_pred             ccCCCCcceEEeccccCCh--------hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          198 KEKLGEYDCIILAALAGNE--------EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~--------edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        ...+.|+||++---...        ..-..+++.+.+ |+||.+++..+.
T Consensus       106 --a~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ST  154 (432)
T 3pid_A          106 --AYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKST  154 (432)
T ss_dssp             --HHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSC
T ss_pred             --HHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCC
Confidence              22467999986222110        134667788888 999999987663

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.46  E-value=0.21  Score=49.22  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKS--THFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|..||+|.+|.+.......  .|  .+|+.+|++++.++.... +-.........+.+...|.    ..+.+.|+|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~--~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~----~~~~~aDvVii   75 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA--QGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVIS   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH----HHhCCCCEEEE
Confidence            589999999988874433221  24  689999999987754332 2211110113455544553    23467899999


Q ss_pred             ccccCCh----h-------------hHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNE----E-------------EKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~----e-------------dK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +.-....    +             -...++..+.++ .|++.+++
T Consensus        76 av~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~  120 (309)
T 1hyh_A           76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVV  120 (309)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             ecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE
Confidence            7554110    0             035666666665 46777665

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.38  E-value=0.19  Score=40.67  Aligned_cols=71  Identities=21%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc---ccCCCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV---KEKLGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el---~~dL~~FDv  206 (535)
                      ..++|+-+|+|.+|.........  .| .+|+.+|++++..+...    ..     .+.++.+|..+.   ...+.++|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~~~~~~~~----~~-----~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDLAALAVLN----RM-----GVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCHHHHHHHH----TT-----TCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCHHHHHHHH----hC-----CCcEEEecCCCHHHHHHHHcCCCE
Confidence            45799999999877765544432  46 89999999998776544    22     356777877542   123357999


Q ss_pred             EEeccc
Q 041205          207 IILAAL  212 (535)
Q Consensus       207 VfiaAL  212 (535)
                      |+..+.
T Consensus        73 vi~~~~   78 (118)
T 3ic5_A           73 VISAAP   78 (118)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            998653

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.33  E-value=0.066  Score=51.48  Aligned_cols=90  Identities=18%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|..||+|.+|..-......  .|.+|+.+|.+++..+..++    .| +    .+ ..|..+.   ...+|+||+..-
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~----~g-~----~~-~~~~~~~---~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRNPEAIADVIA----AG-A----ET-ASTAKAI---AEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TT-C----EE-CSSHHHH---HHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHH----CC-C----ee-cCCHHHH---HhCCCEEEEECC
Confidence            589999999998764433221  46789999999987765443    25 2    22 2333222   235899998633


Q ss_pred             cCChhhHHHHH---HHHHhhcccCeEEEEE
Q 041205          213 AGNEEEKAKIL---GHIRKYMKEGGVLLVR  239 (535)
Q Consensus       213 Vgm~edK~~VL---~eL~rvLKPGGvLVvR  239 (535)
                      ..  ..-..++   +.+.+.++||.+|+.-
T Consensus        71 ~~--~~~~~~~~~~~~l~~~l~~~~~vv~~   98 (299)
T 1vpd_A           71 NS--PHVKEVALGENGIIEGAKPGTVLIDM   98 (299)
T ss_dssp             SH--HHHHHHHHSTTCHHHHCCTTCEEEEC
T ss_pred             CH--HHHHHHHhCcchHhhcCCCCCEEEEC
Confidence            21  2345566   5677889999877543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.32  E-value=0.12  Score=51.27  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++|.+||+|.+|.+-. .+++   .|..|+++|++++.++...+    .|     +.+ ..+..++.   ...|+||+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~l~~----~g-----~~~-~~~~~e~~---~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCE---AGYALQVWNRTPARAASLAA----LG-----ATI-HEQARAAA---RDADIVVS   93 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT----TT-----CEE-ESSHHHHH---TTCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHH----CC-----CEe-eCCHHHHH---hcCCEEEE
Confidence            457999999999987643 3334   57899999999987655432    25     222 23433322   45799998


Q ss_pred             ccccCChhhHHHHHH--HHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILG--HIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~--eL~rvLKPGGvLVvRs  240 (535)
                      .---.  ..-..++.  .+...++||.+|+--+
T Consensus        94 ~vp~~--~~~~~v~~~~~~~~~l~~~~~vi~~s  124 (320)
T 4dll_A           94 MLENG--AVVQDVLFAQGVAAAMKPGSLFLDMA  124 (320)
T ss_dssp             CCSSH--HHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred             ECCCH--HHHHHHHcchhHHhhCCCCCEEEecC
Confidence            53221  23455565  6777889988876654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.30  E-value=0.042  Score=52.96  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             CCCEEEEEccCCChhhHH-HHHhhcCC-----C-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE-------Ecc--c
Q 041205          131 QLKKVAFVGSGPMPLTSI-ILASQHMK-----S-THFDNIDIDETANNLARRIVSSDDEIEKRMKFL-------TCD--I  194 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI-~LAk~~l~-----G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi-------~GD--A  194 (535)
                      .+++|++||+|.+|..-. .|++   .     | .+|+.+|. ++.++..++   ..| +    .+.       ...  +
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~---~~~~~~g~~~V~~~~r-~~~~~~l~~---~~g-~----~~~~~~~~~~~~~~~~   74 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLAL---RAAATDGLLEVSWIAR-GAHLEAIRA---AGG-L----RVVTPSRDFLARPTCV   74 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH---HHHHTTSSEEEEEECC-HHHHHHHHH---HTS-E----EEECSSCEEEECCSEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh---CccccCCCCCEEEEEc-HHHHHHHHh---cCC-e----EEEeCCCCeEEecceE
Confidence            347999999998875532 2333   3     6 78999998 654443332   134 1    111       000  1


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.......+|+||+. ...  .+-..+++.+.+.++||.+++.-
T Consensus        75 ~~~~~~~~~~D~vil~-vk~--~~~~~v~~~i~~~l~~~~~iv~~  116 (317)
T 2qyt_A           75 TDNPAEVGTVDYILFC-TKD--YDMERGVAEIRPMIGQNTKILPL  116 (317)
T ss_dssp             ESCHHHHCCEEEEEEC-CSS--SCHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ecCccccCCCCEEEEe-cCc--ccHHHHHHHHHhhcCCCCEEEEc
Confidence            0111122569999996 443  24577888999999988766653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.29  E-value=0.11  Score=49.27  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             CCEEEEEccCCChhhHHH-HHhhcCCCcE-EEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          132 LKKVAFVGSGPMPLTSII-LASQHMKSTH-FDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~-VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++|..||+|.+|.+-.. +++   .|.. |+.+|.+++..+...+   ..|     +.+ ..|..+   ...+.|+|++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~---~g~~~v~~~~~~~~~~~~~~~---~~g-----~~~-~~~~~~---~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR---KGFRIVQVYSRTEESARELAQ---KVE-----AEY-TTDLAE---VNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH---HTCCEEEEECSSHHHHHHHHH---HTT-----CEE-ESCGGG---SCSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH---CCCeEEEEEeCCHHHHHHHHH---HcC-----Cce-eCCHHH---HhcCCCEEEE
Confidence            478999999987765332 223   3556 8999999987665433   335     222 234322   2346899999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.--   ..-..+++.+.+.+++|.+|+.-+
T Consensus        75 av~~---~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           75 SLKD---SAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             CCCH---HHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             ecCH---HHHHHHHHHHHhhcCCCcEEEECC
Confidence            6332   233677788888888887665543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.28  E-value=0.09  Score=56.22  Aligned_cols=98  Identities=12%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             CCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .++|.+||.|.+|.+ +..|++   .|.+|+++|++++.++...+.- ..|   .++.. ..+..++...+...|+||+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~g-~~g---~~i~~-~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLANE-AKG---TKVVG-AQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHTT-TTT---SSCEE-CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEEChhHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHhcc-cCC---Cceec-cCCHHHHHhhccCCCEEEEe
Confidence            468999999998876 334444   5779999999999876544321 012   23322 34444444444568999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      --.+  ..-..+++.+...|+||.+|+--
T Consensus        76 Vp~~--~~v~~vl~~l~~~L~~g~iIId~  102 (484)
T 4gwg_A           76 VKAG--QAVDDFIEKLVPLLDTGDIIIDG  102 (484)
T ss_dssp             SCSS--HHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             cCCh--HHHHHHHHHHHHhcCCCCEEEEc
Confidence            3332  24567889999999998877553

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.26  E-value=0.095  Score=55.57  Aligned_cols=97  Identities=14%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++|.+||+|.+|.+- ..|++   .|..|+.+|++++.++...+...  |   ..+.. +.|..++...+...|+||+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~~r~~~~~~~l~~~~~--~---~gi~~-~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES---RGYTVSIFNRSREKTEEVIAENP--G---KKLVP-YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHST--T---SCEEE-CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHhhCC--C---CCeEE-eCCHHHHHhCCCCCCEEEE
Confidence            35789999999988763 33444   57789999999988765544221  1   22332 3344444444445899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .--.+  ..-..+++.+.+.++||.+|+-
T Consensus        85 ~Vp~~--~~v~~vl~~l~~~l~~g~iIId  111 (480)
T 2zyd_A           85 MVKAG--AGTDAAIDSLKPYLDKGDIIID  111 (480)
T ss_dssp             CSCSS--SHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ECCCH--HHHHHHHHHHHhhcCCCCEEEE
Confidence            63322  2457788999999999886653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.22  E-value=0.21  Score=50.22  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHH-HHHh---hcCCcCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLAR-RIVS---SDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR-~li~---~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++|.-||+|.+|.+...+...  .|. .|+.+|+|++.++... .+..   ..+ ...++++. .|.    ..+.+.|
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~al~~aD   84 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIEGVPQGKALDLNHCMALIG-SPAKIFGE-NNY----EYLQNSD   84 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSTTHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHhHhhccC-CCCEEEEC-CCH----HHHCCCC
Confidence            34799999999998875444332  344 7999999999887532 2211   222 22355542 443    3346789


Q ss_pred             eEEecccc----CC---------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALA----GN---------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALV----gm---------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++...    |+         .+-+..+++.+.++. |++++++-
T Consensus        85 ~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~  130 (328)
T 2hjr_A           85 VVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI  130 (328)
T ss_dssp             EEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             EEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            99998633    11         123677788888775 88887653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.18  E-value=0.053  Score=53.36  Aligned_cols=98  Identities=16%  Similarity=0.264  Sum_probs=57.9

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-----CCeEEEEccccccccCCCCcce
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-----KRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-----~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      ++|+.||+|.+|.+-.. |++   .|..|+.++.++ . +    .+++.| +.     ..+.+....+.+-+.....+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~-~-~----~i~~~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~D~   72 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR---SGEDVHFLLRRD-Y-E----AIAGNG-LKVFSINGDFTLPHVKGYRAPEEIGPMDL   72 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH---TSCCEEEECSTT-H-H----HHHHTC-EEEEETTCCEEESCCCEESCHHHHCCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEEcCc-H-H----HHHhCC-CEEEcCCCeEEEeeceeecCHHHcCCCCE
Confidence            68999999999876433 444   567899999986 2 2    233444 20     1122100011111112357999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEccccc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA  244 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl  244 (535)
                      |+++ .+.  .+-..+++.+.+.++|+..|+.- .+|+
T Consensus        73 vila-vk~--~~~~~~l~~l~~~l~~~~~iv~l-~nGi  106 (312)
T 3hn2_A           73 VLVG-LKT--FANSRYEELIRPLVEEGTQILTL-QNGL  106 (312)
T ss_dssp             EEEC-CCG--GGGGGHHHHHGGGCCTTCEEEEC-CSSS
T ss_pred             EEEe-cCC--CCcHHHHHHHHhhcCCCCEEEEe-cCCC
Confidence            9996 442  23457899999999999876653 3454

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=94.18  E-value=0.024  Score=53.76  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             CEEEEEccCCChhhHHH-HHhh-cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSII-LASQ-HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~-~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|.+||+|.+|.+-.. |++. +.+..+|+.+|++++..+...+   ..| +    .+ ..|..+..   ...|+||++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~---~~g-~----~~-~~~~~e~~---~~aDvVila   70 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASE---KYG-L----TT-TTDNNEVA---KNADILILS   70 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHH---HHC-C----EE-CSCHHHHH---HHCSEEEEC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHH---HhC-C----EE-eCChHHHH---HhCCEEEEE
Confidence            68999999988765332 2331 1122389999999987655433   335 2    22 22332222   357999996


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      - ..  .....+++++.+.++||.+++..
T Consensus        71 v-~~--~~~~~v~~~l~~~l~~~~~vvs~   96 (247)
T 3gt0_A           71 I-KP--DLYASIINEIKEIIKNDAIIVTI   96 (247)
T ss_dssp             S-CT--TTHHHHC---CCSSCTTCEEEEC
T ss_pred             e-CH--HHHHHHHHHHHhhcCCCCEEEEe
Confidence            4 32  56788999999999999877643

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.17  E-value=0.11  Score=54.65  Aligned_cols=95  Identities=16%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|..||+|.+|.+-. .|++   .|..|+.+|++++.++...+...  +   .++. ...|..++...+...|+|++.-
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~~~--~---~gi~-~~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES---RGYTVAIYNRTTSKTEEVFKEHQ--D---KNLV-FTKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTT--T---SCEE-ECSSHHHHHHTBCSSCEEEECC
T ss_pred             CcEEEEeeHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHHHhCc--C---CCeE-EeCCHHHHHhhccCCCEEEEEc
Confidence            6899999998886633 3444   46789999999988766554321  1   2333 2344444443344589999863


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -.+  ..-..+++.+.+.++||.+|+-
T Consensus        77 p~~--~~v~~vl~~l~~~l~~g~iiId  101 (474)
T 2iz1_A           77 QAG--AATDATIKSLLPLLDIGDILID  101 (474)
T ss_dssp             CTT--HHHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCc--hHHHHHHHHHHhhCCCCCEEEE
Confidence            322  2356788899999999886653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.14  E-value=0.1  Score=50.94  Aligned_cols=92  Identities=11%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .++|.+||+|.+|.+-.. +++.-++..+|+.+|++++..+...+   ..|     +.+ ..|..+.   ..+.|+||++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~---~~g-----i~~-~~~~~~~---~~~aDvVila   70 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKE---KCG-----VHT-TQDNRQG---ALNADVVVLA   70 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHH---TTC-----CEE-ESCHHHH---HSSCSEEEEC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHH---HcC-----CEE-eCChHHH---HhcCCeEEEE
Confidence            478999999988765433 33311222389999999987665443   345     233 2333222   2468999996


Q ss_pred             cccCChhhHHHHHHHHHhh-cccCeEEEE
Q 041205          211 ALAGNEEEKAKILGHIRKY-MKEGGVLLV  238 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rv-LKPGGvLVv  238 (535)
                      ---   .....+++++.+. ++++.+|+.
T Consensus        71 v~p---~~~~~vl~~l~~~~l~~~~iiiS   96 (280)
T 3tri_A           71 VKP---HQIKMVCEELKDILSETKILVIS   96 (280)
T ss_dssp             SCG---GGHHHHHHHHHHHHHTTTCEEEE
T ss_pred             eCH---HHHHHHHHHHHhhccCCCeEEEE
Confidence            422   5788999999998 888766654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.13  E-value=0.076  Score=56.48  Aligned_cols=112  Identities=14%  Similarity=0.121  Sum_probs=71.2

Q ss_pred             chhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|..-+-+.-...+.+..+ ...+++|+-+|+|++|......++.  .|++|+.+|+|+.....|.    ..| +    
T Consensus       196 fDn~yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra--~Ga~Viv~D~dp~ra~~A~----~~G-~----  264 (435)
T 3gvp_A          196 FDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKA--MGSIVYVTEIDPICALQAC----MDG-F----  264 (435)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HTT-C----
T ss_pred             hhhhhhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEeCChhhhHHHH----HcC-C----
Confidence            46644444444555555442 3578999999999999998888883  5899999999997544433    345 2    


Q ss_pred             EEEEccccccccCCCCcceEEeccccCChhhHHHHH-HHHHhhcccCeEEEEEcccc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKIL-GHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL-~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ++  .+..   .-+...|+|+.....      ..++ .+..+.||||++|+- -++|
T Consensus       265 ~v--~~Le---eal~~ADIVi~atgt------~~lI~~e~l~~MK~gailIN-vgrg  309 (435)
T 3gvp_A          265 RL--VKLN---EVIRQVDIVITCTGN------KNVVTREHLDRMKNSCIVCN-MGHS  309 (435)
T ss_dssp             EE--CCHH---HHTTTCSEEEECSSC------SCSBCHHHHHHSCTTEEEEE-CSST
T ss_pred             Ee--ccHH---HHHhcCCEEEECCCC------cccCCHHHHHhcCCCcEEEE-ecCC
Confidence            22  2322   233568999984221      1123 255568999987754 4444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.99  E-value=0.12  Score=54.59  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHh---hcCCc--------CCCeEEEEccccccccC
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVS---SDDEI--------EKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~---~lG~L--------s~rI~Fi~GDA~el~~d  200 (535)
                      ++|..||+|.+|.+ +..||+ ..+|.+|+++|+|++.++..++-..   ..| +        ..++++ +.|..+.   
T Consensus        10 mkI~VIG~G~vG~~~A~~La~-~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~g-l~~~~~~~~~~~l~~-t~~~~~~---   83 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAH-KCPHITVTVVDMNTAKIAEWNSDKLPIYEPG-LDEIVFAARGRNLFF-SSDIPKA---   83 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTT-HHHHHHHHBTTTEEE-ESCHHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHHCCCCCcCCCC-HHHHHHHhhcCCEEE-ECCHHHH---
Confidence            69999999999986 556666 2347899999999998876543100   001 0        113443 2332221   


Q ss_pred             CCCcceEEeccccCC------------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGN------------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm------------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+.|+||+.---..            ...-..+++.+.+.++||.+|+..+
T Consensus        84 ~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           84 IAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             hhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            235799998622110            1136778899999999998887654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.93  E-value=0.097  Score=51.19  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      .++|.+||+|.+|.+-. .+++   .|.+|+++|++++.++...+    .|     +.+ ..|..++   .. .|+||+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~---~~-aDvvi~~   77 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE---WPGGVTVYDIRIEAMTPLAE----AG-----ATL-ADSVADV---AA-ADLIHIT   77 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT---STTCEEEECSSTTTSHHHHH----TT-----CEE-CSSHHHH---TT-SSEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH----CC-----CEE-cCCHHHH---Hh-CCEEEEE
Confidence            46899999999987633 3333   57889999999988766543    35     222 2333332   24 7999985


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ---  ...-..+++.+.+.++||.+++-.+
T Consensus        78 vp~--~~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           78 VLD--DAQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             CSS--HHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             CCC--hHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            322  1234567899999999998876654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.93  E-value=0.35  Score=50.27  Aligned_cols=75  Identities=16%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC-cceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE-YDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~-FDvVfi  209 (535)
                      .+++|++||-|..|+++..+..+  .|.+|++.|..+.......+.+++.|     |.+..|...+  ..+.+ +|+|+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~~~~~~~~L~~~g-----i~~~~g~~~~--~~~~~~~d~vv~   78 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFDENPTAQSLLEEG-----IKVVCGSHPL--ELLDEDFCYMIK   78 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGGGCHHHHHHHHTT-----CEEEESCCCG--GGGGSCEEEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCcccCChHHHHHHhCC-----CEEEECCChH--HhhcCCCCEEEE
Confidence            57899999999999987666553  78999999996532111122344556     5777775432  11234 999998


Q ss_pred             ccccC
Q 041205          210 AALAG  214 (535)
Q Consensus       210 aALVg  214 (535)
                      +..+.
T Consensus        79 spgi~   83 (451)
T 3lk7_A           79 NPGIP   83 (451)
T ss_dssp             CTTSC
T ss_pred             CCcCC
Confidence            87774

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.91  E-value=0.094  Score=50.46  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             CCCEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..++|..||+|.+|..-.. +++   .|.+|+.+|.+++..+...+    .| +    .+ ..|..+..   ...|+|++
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~~----~g-~----~~-~~~~~~~~---~~~D~vi~   66 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLK---EGVTVYAFDLMEANVAAVVA----QG-A----QA-CENNQKVA---AASDIIFT   66 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHT----TT-C----EE-CSSHHHHH---HHCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH----CC-C----ee-cCCHHHHH---hCCCEEEE
Confidence            3579999999998876433 333   47799999999987654332    25 2    22 23332222   35899999


Q ss_pred             ccccCChhhHHHHHH---HHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKILG---HIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~---eL~rvLKPGGvLVvR  239 (535)
                      .....  ..-..++.   .+.+.++||.+|+.-
T Consensus        67 ~vp~~--~~~~~v~~~~~~l~~~l~~~~~vv~~   97 (301)
T 3cky_A           67 SLPNA--GIVETVMNGPGGVLSACKAGTVIVDM   97 (301)
T ss_dssp             CCSSH--HHHHHHHHSTTCHHHHSCTTCEEEEC
T ss_pred             ECCCH--HHHHHHHcCcchHhhcCCCCCEEEEC
Confidence            64331  23455664   677788998876653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.88  E-value=0.052  Score=52.48  Aligned_cols=90  Identities=12%  Similarity=0.023  Sum_probs=59.0

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+- ..+++   .|.+|+++|++++.++...+    .|     +.+ ..|..++.   ...|+||+.-
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~~---~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK---AGCSVTIWNRSPEKAEELAA----LG-----AER-AATPCEVV---ESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHHH----TT-----CEE-CSSHHHHH---HHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CC-----Cee-cCCHHHHH---hcCCEEEEEc
Confidence            689999999888763 33444   57899999999988766543    25     222 23333322   3479999853


Q ss_pred             ccCChhhHHHHH---HHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKIL---GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL---~eL~rvLKPGGvLVvRs  240 (535)
                      --.  ..-..++   +.+.+.++||.+++.-+
T Consensus        66 p~~--~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 ADP--AAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             SSH--HHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CCH--HHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            211  2445666   77788899998776544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.84  E-value=0.084  Score=52.10  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCC-------cEEEEEeCChh-----HHHHHHHHHhh---c-CC-cCCCeEEEEcc
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKS-------THFDNIDIDET-----ANNLARRIVSS---D-DE-IEKRMKFLTCD  193 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~G-------a~VtGIDIDpe-----AIelAR~li~~---l-G~-Ls~rI~Fi~GD  193 (535)
                      .++|..||+|.+|.+-. .|++   .|       ..|+.+|++++     ..+..++.-..   . |. +..++.+ +.|
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~---~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~   83 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGG---NAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPD   83 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH---HHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh---cCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcC
Confidence            46999999998877643 3444   34       68999999988     55543321100   0 10 1123433 233


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..+.   ..++|+||++ ...  .....+++.+.+.++||.+++.- ..|
T Consensus        84 ~~~~---~~~aD~Vila-v~~--~~~~~v~~~i~~~l~~~~ivv~~-~~G  126 (354)
T 1x0v_A           84 VVQA---AEDADILIFV-VPH--QFIGKICDQLKGHLKANATGISL-IKG  126 (354)
T ss_dssp             HHHH---HTTCSEEEEC-CCG--GGHHHHHHHHTTCSCTTCEEEEC-CCC
T ss_pred             HHHH---HcCCCEEEEe-CCH--HHHHHHHHHHHhhCCCCCEEEEE-CCc
Confidence            2221   2468999996 332  46788999999999998876543 344

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.84  E-value=0.11  Score=54.78  Aligned_cols=97  Identities=14%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--cCCCeEEEEccccccccCCCCcceEEe
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--IEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ++|..||+|.+|..- ..|++   .|..|+.+|++++.++...+.   .|.  ...++. ...|..++...+...|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~---~g~~~~~~~i~-~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMKA---NASAPFAGNLK-AFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHH---TTTSTTGGGEE-ECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHh---cCCCCCCCCeE-EECCHHHHHhcccCCCEEEE
Confidence            579999999888763 33444   467899999999887655442   230  012232 23344343333345899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .--.+  ..-..+++.+.+.++||.+|+.
T Consensus        75 aVp~~--~~v~~vl~~l~~~l~~g~iIId  101 (478)
T 1pgj_A           75 LVQAG--AATDSTIEQLKKVFEKGDILVD  101 (478)
T ss_dssp             CCCCS--HHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ecCCh--HHHHHHHHHHHhhCCCCCEEEE
Confidence            63321  2456788899999999886654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.81  E-value=0.51  Score=47.84  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..+++|.-||+|.+|.+............+|+.+|++++.++ .|..+......+..++++..+|..    .+.+.|+|+
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~----a~~~aDvVv   78 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE----DCKDADIVC   78 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG----GGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH----HhCCCCEEE
Confidence            457899999999988886654331111248999999988654 344444433312245666666532    346789999


Q ss_pred             ecccc
Q 041205          209 LAALA  213 (535)
Q Consensus       209 iaALV  213 (535)
                      +.+.+
T Consensus        79 i~ag~   83 (326)
T 3pqe_A           79 ICAGA   83 (326)
T ss_dssp             ECCSC
T ss_pred             Eeccc
Confidence            98655

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.76  E-value=0.28  Score=48.52  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHH-HHHHhh---cCCcCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLA-RRIVSS---DDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelA-R~li~~---lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++|..||+|.+|.+.......  .|. .|+.+|++++.++.. ..+...   .+ ...++.+. .|.    ..+.+.|
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~a~~~aD   74 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAEGIPQGKALDITHSMVMFG-STSKVIGT-DDY----ADISGSD   74 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCchHHHHHHHHHHhhhhhcC-CCcEEEEC-CCH----HHhCCCC
Confidence            46799999999988874443321  344 799999999877752 222211   22 12345432 343    2346789


Q ss_pred             eEEeccccC----C---------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAG----N---------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVg----m---------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|+++..+.    +         .+-+..+++.+.++ .|++++++-
T Consensus        75 iVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~  120 (317)
T 2ewd_A           75 VVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICI  120 (317)
T ss_dssp             EEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEe
Confidence            999976331    1         13367778888876 468877653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.70  E-value=0.28  Score=49.80  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..+++|.-||+|.+|.+............+++-+|++++.++ .+..+..... +...+.+..+|.    .++.+.|+|+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~~~~~i~~~~~----~a~~~aDiVv   81 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP-FTSPKKIYSAEY----SDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh-hcCCcEEEECcH----HHhcCCCEEE
Confidence            567899999999998887654332122248999999987543 4444444333 224567666653    2346789999


Q ss_pred             ecccc
Q 041205          209 LAALA  213 (535)
Q Consensus       209 iaALV  213 (535)
                      +.+.+
T Consensus        82 i~ag~   86 (326)
T 3vku_A           82 ITAGA   86 (326)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            88665

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.66  E-value=0.16  Score=52.24  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=60.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-c------------CCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-I------------EKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-L------------s~rI~Fi~GDA~el~~  199 (535)
                      ++|..||+|.+|.+......   .|.+|+++|++++.++..++    .|. +            ..++.+ +.|..+   
T Consensus         1 MkI~VIG~G~vG~~~A~~La---~G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~---   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKA---   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHH---
Confidence            48999999988776433322   27899999999988765432    120 0            013333 223211   


Q ss_pred             CCCCcceEEeccccCC--------hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGN--------EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm--------~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...+.|+||+.---..        ...-..+++.+.+ ++||.+++..+.
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST  118 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC
Confidence            1235799998622210        0136788899999 999998887554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.53  E-value=0.2  Score=50.50  Aligned_cols=101  Identities=21%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHH-HHHHh---hcCCcCCCeEEEEccccccccCCCCcc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLA-RRIVS---SDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelA-R~li~---~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..++|.-||+|.+|.+...+...  .|- .|+.+|++++.++.. ..+..   .++ ...++++ +.|..+   .+.+.|
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~-t~d~~e---a~~~aD   80 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVKGMPEGKALDLSHVTSVVD-TNVSVRA-EYSYEA---ALTGAD   80 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHHTT-CCCCEEE-ECSHHH---HHTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECChhHHHHHHHHHHhhhhccC-CCCEEEE-eCCHHH---HhCCCC
Confidence            45799999999998875444331  333 699999999887763 22222   233 2345554 345432   345789


Q ss_pred             eEEeccccC----C--------------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAG----N--------------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVg----m--------------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +|++.+.+.    +              .+-+..++..+.++. |++++++-
T Consensus        81 iVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~  131 (331)
T 1pzg_A           81 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVV  131 (331)
T ss_dssp             EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             EEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEE
Confidence            999987442    1              122777888888875 88877653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.51  E-value=0.094  Score=53.12  Aligned_cols=95  Identities=19%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEe---CChhHHHHHHHHHhhcCC------cCC-------CeEEEEcccc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNID---IDETANNLARRIVSSDDE------IEK-------RMKFLTCDIM  195 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGID---IDpeAIelAR~li~~lG~------Ls~-------rI~Fi~GDA~  195 (535)
                      ++|+.||+|.+|.+... |++  ..|..|+.+|   .+++.++.+.   +..|.      ...       ++...+.|..
T Consensus         3 mkI~ViGaG~~G~~~a~~La~--~~G~~V~~~~~~~r~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAAS--RDGVEVRVLTLFADEAERWTKAL---GADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTT--STTEEEEEECCSTTHHHHHHHHH---TTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCCEEEEEeCCCCcHHHHHHHH---hhccceeeeecCCCccceeeccceEEeCCHH
Confidence            58999999987766433 222  1478999999   7777665432   22220      000       1111222322


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +   ....+|+||++--.   .....+++.+.+.++||.+|+.
T Consensus        78 ~---a~~~aD~Vilav~~---~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           78 I---AISGADVVILTVPA---FAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             H---HHTTCSEEEECSCG---GGHHHHHHHHTTTCCTTCEEEE
T ss_pred             H---HhCCCCEEEEeCch---HHHHHHHHHHHhhCCCCcEEEE
Confidence            2   12468999996333   4678899999999999987766

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.50  E-value=0.34  Score=51.09  Aligned_cols=100  Identities=21%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHH------------HhhcCCcCCCeEEEEccccc
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRI------------VSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~l------------i~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..+++.--||.|-+|++ |.+||+   .|-+|+++|+|++.++.-++-            +++.- ...++.|- .|   
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~---~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~-~~g~l~~t-td---   80 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAK---HGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL-SSGKLKVS-TT---   80 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEE-SS---
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhc-ccCceEEe-Cc---
Confidence            45789999999999986 466766   578999999999998876541            11100 01345553 23   


Q ss_pred             cccCCCCcceEEeccccCCh---------hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          197 VKEKLGEYDCIILAALAGNE---------EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~---------edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                          ..+.|+||+.---...         ..-....+.+.+.|+||.+++..+.
T Consensus        81 ----~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~ST  130 (431)
T 3ojo_A           81 ----PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVEST  130 (431)
T ss_dssp             ----CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSC
T ss_pred             ----hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence                2357999985221111         1235667889999999998888763

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.41  E-value=0.12  Score=50.18  Aligned_cols=92  Identities=11%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeC--ChhHHHHHHHHHhhcCC-----cC-CCeEEEEc-cccccccCCC
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDI--DETANNLARRIVSSDDE-----IE-KRMKFLTC-DIMEVKEKLG  202 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDI--DpeAIelAR~li~~lG~-----Ls-~rI~Fi~G-DA~el~~dL~  202 (535)
                      ++|..||+|.+|.+-. .|++   .|..|+.+|.  +++.++..++    .|.     .. .++.+... |..+   ...
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~---~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISA----GREHPRLGVKLNGVEIFWPEQLEK---CLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHT----TCCBTTTTBCCCSEEEECGGGHHH---HHT
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEEccCCHHHHHHHHH----hCcCcccCccccceEEecHHhHHH---HHh
Confidence            4899999998876633 3434   4678999999  8887664432    230     00 11222110 2211   135


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ++|+||+.---   .....++..+.+ ++||.+++.
T Consensus        71 ~~D~vi~~v~~---~~~~~v~~~i~~-l~~~~~vv~  102 (335)
T 1txg_A           71 NAEVVLLGVST---DGVLPVMSRILP-YLKDQYIVL  102 (335)
T ss_dssp             TCSEEEECSCG---GGHHHHHHHHTT-TCCSCEEEE
T ss_pred             cCCEEEEcCCh---HHHHHHHHHHhc-CCCCCEEEE
Confidence            68999996333   467788888988 998887654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=93.40  E-value=0.12  Score=51.92  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      +++|..||+|.+|.+-......  .|.+|+.+|.+++. .+.+    ...| +    .+.  |..+..   ...|+|+++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~--~G~~V~~~~~~~~~~~~~a----~~~G-~----~~~--~~~e~~---~~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKD--SGVDVTVGLRSGSATVAKA----EAHG-L----KVA--DVKTAV---AAADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTTCHHHHHH----HHTT-C----EEE--CHHHHH---HTCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CcCEEEEEECChHHHHHHH----HHCC-C----EEc--cHHHHH---hcCCEEEEe
Confidence            5789999999888775443332  46789999999764 4444    3456 3    322  433322   358999996


Q ss_pred             cccCChhhHHHHHH-HHHhhcccCeEEEEEcccccc
Q 041205          211 ALAGNEEEKAKILG-HIRKYMKEGGVLLVRSAKGAR  245 (535)
Q Consensus       211 ALVgm~edK~~VL~-eL~rvLKPGGvLVvRsa~GlR  245 (535)
                      .-.   ..-..++. ++.+.++||.+|+.  ..|..
T Consensus        80 vp~---~~~~~v~~~~i~~~l~~~~ivi~--~~gv~  110 (338)
T 1np3_A           80 TPD---EFQGRLYKEEIEPNLKKGATLAF--AHGFS  110 (338)
T ss_dssp             SCH---HHHHHHHHHHTGGGCCTTCEEEE--SCCHH
T ss_pred             CCc---HHHHHHHHHHHHhhCCCCCEEEE--cCCch
Confidence            433   23467787 88889999987774  35543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=93.37  E-value=0.11  Score=55.70  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=74.4

Q ss_pred             chhhHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|+.-+-+.-...+.+.. ..-.+++|+-||.|.+|.....+++.  .|++|+.+|+|+.....|.    ..| +    
T Consensus       223 fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lra--fGa~Viv~d~dp~~a~~A~----~~G-~----  291 (464)
T 3n58_A          223 FDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAG--AGARVKVTEVDPICALQAA----MDG-F----  291 (464)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHH----HTT-C----
T ss_pred             hhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHH--CCCEEEEEeCCcchhhHHH----hcC-c----
Confidence            6887777666666666544 23689999999999999998888873  6899999999997543332    345 2    


Q ss_pred             EEEEccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ++  .+..++   +...|+|+....-     +.-+-.+..+.||||++|+ ..++|
T Consensus       292 ~v--v~LeEl---L~~ADIVv~atgt-----~~lI~~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          292 EV--VTLDDA---ASTADIVVTTTGN-----KDVITIDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             EE--CCHHHH---GGGCSEEEECCSS-----SSSBCHHHHHHSCTTEEEE-ECSSS
T ss_pred             ee--ccHHHH---HhhCCEEEECCCC-----ccccCHHHHhcCCCCeEEE-EcCCC
Confidence            22  233232   2468999875321     1112245566899999876 44444

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.32  E-value=0.17  Score=50.41  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             EEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhh---c-CC-cCCCeEEEEccccccccCCCCcceE
Q 041205          134 KVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSS---D-DE-IEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       134 RVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~---l-G~-Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      +|.+||+|.+|.+-.. |++   .|..|+.+|.+++.++..++.-..   . |. +..++.+ ..|..+.   ...+|+|
T Consensus        17 kI~iIG~G~mG~~la~~L~~---~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~aDvV   89 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK---KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEKA---YNGAEII   89 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHHH---HTTCSSE
T ss_pred             eEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccccccccccceee-eCCHHHH---HcCCCEE
Confidence            8999999987765322 222   467899999999887665543110   0 10 1123333 2232221   2468999


Q ss_pred             EeccccCChhhHHHHHHH----HHhhccc-CeEEEEE
Q 041205          208 ILAALAGNEEEKAKILGH----IRKYMKE-GGVLLVR  239 (535)
Q Consensus       208 fiaALVgm~edK~~VL~e----L~rvLKP-GGvLVvR  239 (535)
                      |+. ...  .....++..    +...++| |.+++.-
T Consensus        90 ila-v~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~  123 (366)
T 1evy_A           90 LFV-IPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVC  123 (366)
T ss_dssp             EEC-CCH--HHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             EEC-CCh--HHHHHHHHHhHHHHHHhcCccCCEEEEE
Confidence            986 332  456778888    8888888 8766543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.26  E-value=0.14  Score=53.56  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ++|..||+|.+|.+ +..|++ ..+|.+|+++|++++.++..++            ++...  ...++++ +.|..+.  
T Consensus         6 mkI~VIG~G~mG~~lA~~La~-~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~-t~~~~e~--   79 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAH-MCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNLFF-STNIDDA--   79 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEEE-ESCHHHH--
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEEE-ECCHHHH--
Confidence            69999999999985 445555 2237899999999998776432            11110  0123444 3333221  


Q ss_pred             CCCCcceEEeccccCCh------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNE------------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~------------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       ..+.|+||+.---...            ..-..+++.+.+.++||.+|+..+
T Consensus        80 -~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  131 (467)
T 2q3e_A           80 -IKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS  131 (467)
T ss_dssp             -HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS
T ss_pred             -HhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC
Confidence             2357999986322110            113577888899999988876654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=93.25  E-value=0.016  Score=58.58  Aligned_cols=100  Identities=9%  Similarity=-0.019  Sum_probs=60.9

Q ss_pred             CCCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CCc
Q 041205          130 AQLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GEY  204 (535)
Q Consensus       130 ~~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~F  204 (535)
                      .++++||-+  |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....|..+.....   ..+
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~~~~~~~~~~~~v~~~t~~~g~  241 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLK--DGIKLVNIVRKQEQADLLKA----QG-AVHVCNAASPTFMQDLTEALVSTGA  241 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHH----TT-CSCEEETTSTTHHHHHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHh----CC-CcEEEeCCChHHHHHHHHHhcCCCc
Confidence            578999999  899999999999994  58899999999999888775    56 2211211111211111111   259


Q ss_pred             ceEEeccccCChhhHHHHHHHHHh-hcccCeEEEE
Q 041205          205 DCIILAALAGNEEEKAKILGHIRK-YMKEGGVLLV  238 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~r-vLKPGGvLVv  238 (535)
                      |+||-...-.  .--...++.+.. .+++||.++.
T Consensus       242 d~v~d~~g~~--~~~~~~~~~l~~~~~r~~G~~~~  274 (379)
T 3iup_A          242 TIAFDATGGG--KLGGQILTCMEAALNKSAREYSR  274 (379)
T ss_dssp             CEEEESCEEE--SHHHHHHHHHHHHHHTTCCSCCT
T ss_pred             eEEEECCCch--hhHHHHHHhcchhhhccccceee
Confidence            9998643321  112333443332 2467776654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.19  E-value=0.044  Score=51.86  Aligned_cols=92  Identities=11%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC---eEEEEccccccccCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR---MKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r---I~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ++|..||+|.+|.+-. .|++   .|.+|+.+|.+++.++.    +...+ ....   ..+...+    .....++|+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~----l~~~~-~~~~~~~~~~~~~~----~~~~~~~d~vi   68 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYCS----VNLVE-TDGSIFNESLTAND----PDFLATSDLLL   68 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEEE----EEEEC-TTSCEEEEEEEESC----HHHHHTCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCCEEEEEcCccceee----EEEEc-CCCceeeeeeeecC----ccccCCCCEEE
Confidence            4899999998876533 2333   56799999999865321    22222 1111   1122211    11224689999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.--.   ..-..+++.+.+.++||.+++.-
T Consensus        69 ~~v~~---~~~~~v~~~l~~~l~~~~~vv~~   96 (291)
T 1ks9_A           69 VTLKA---WQVSDAVKSLASTLPVTTPILLI   96 (291)
T ss_dssp             ECSCG---GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             EEecH---HhHHHHHHHHHhhCCCCCEEEEe
Confidence            96333   35678889999999998876654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.17  E-value=0.16  Score=54.09  Aligned_cols=97  Identities=12%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             CCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHH-HHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          132 LKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARR-IVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~-li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+|.+||+|.+|.+- ..|++   .|..|+++|++++.++...+ ...  |   .++.. +.|..++...+...|+||+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~~~~--~---~gi~~-~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAAD---HGFTVCAYNRTQSKVDHFLANEAK--G---KSIIG-ATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSSHHHHHHHHTTTT--T---SSEEC-CSSHHHHHHTSCSSCEEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHccccc--C---CCeEE-eCCHHHHHhcCCCCCEEEE
Confidence            4689999999988763 33444   57789999999998776544 211  1   12322 3344444444445899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .---+  ..-..+++.+.+.|+||.+|+--
T Consensus        81 ~Vp~~--~~v~~vl~~l~~~l~~g~iIId~  108 (497)
T 2p4q_A           81 LVKAG--APVDALINQIVPLLEKGDIIIDG  108 (497)
T ss_dssp             CCCSS--HHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EcCCh--HHHHHHHHHHHHhCCCCCEEEEC
Confidence            53222  24567889999999998877643

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.12  E-value=0.38  Score=48.09  Aligned_cols=100  Identities=13%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+.++|.-||+|.+|.+ +..++.. ....+|+-+|+++++...+..+....+   .+++. ++|.    .++.+.|+|+
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~a~dl~~~~~---~~i~~-t~d~----~~l~~aD~Vi   82 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSEGTKGATMDLEIFNL---PNVEI-SKDL----SASAHSKVVI   82 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-----CHHHHHHHTC---TTEEE-ESCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHHHHHHhhhcC---CCeEE-eCCH----HHHCCCCEEE
Confidence            34579999999976643 3334442 224589999999986667777765322   36766 3553    3457799999


Q ss_pred             eccccC---C---------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAG---N---------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVg---m---------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +++.++   |         .+-+.+++..+.++. |+++|++-
T Consensus        83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~  124 (303)
T 2i6t_A           83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA  124 (303)
T ss_dssp             ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence            987442   0         123677777777765 88887653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.04  E-value=0.12  Score=50.76  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=53.1

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|..|| +|.+|.+-.....  ..|..|+++|.+++.                       +..+   .....|+||++-
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~--~~G~~V~~~~~~~~~-----------------------~~~~---~~~~aDvVilav   73 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLR--ASGYPISILDREDWA-----------------------VAES---ILANADVVIVSV   73 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHH--TTTCCEEEECTTCGG-----------------------GHHH---HHTTCSEEEECS
T ss_pred             CEEEEEcCCCHHHHHHHHHHH--hCCCeEEEEECCccc-----------------------CHHH---HhcCCCEEEEeC
Confidence            5899999 9988876443323  256789999998751                       1111   124689999974


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -.   .....++.++.+.++||.+|+.
T Consensus        74 p~---~~~~~vl~~l~~~l~~~~iv~~   97 (298)
T 2pv7_A           74 PI---NLTLETIERLKPYLTENMLLAD   97 (298)
T ss_dssp             CG---GGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CH---HHHHHHHHHHHhhcCCCcEEEE
Confidence            44   4678899999999999886654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.04  E-value=0.17  Score=52.29  Aligned_cols=67  Identities=10%  Similarity=0.059  Sum_probs=51.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCC-CcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEcccc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMK-STHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIM  195 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~-Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~  195 (535)
                      .+.++..|+|||++ .|.+++.+|.+..+ .++|+++|.+|+..+.-+++++..  +..+.+++++..-+.
T Consensus       223 ~l~~~~~viDvGAn-~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          223 RFSDSEKMVDCGAS-IGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCCSSCEEEEETCT-TSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             ccCCCCEEEECCCC-cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            35789999999998 78888888832344 389999999999999999999872  212257888776553

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.96  E-value=0.56  Score=46.85  Aligned_cols=103  Identities=23%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEE-EccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|..||+|.+|.+...+........+|+-+|++++.++ .+..+-.....+....++. +.| .   ..+.+.|+|++.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~---~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-Y---SLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-G---GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-H---HHhCCCCEEEEC
Confidence            589999999998876554332112238999999998765 2333322210011234444 334 2   234678999998


Q ss_pred             ccc----CC-hhhH----HHHH----HHHHhhcccCeEEEEEc
Q 041205          211 ALA----GN-EEEK----AKIL----GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALV----gm-~edK----~~VL----~eL~rvLKPGGvLVvRs  240 (535)
                      +.+    || ..+.    ..++    ..+.++ .|++++++-+
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs  118 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT  118 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence            765    23 1111    1333    344444 6788877754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.95  E-value=0.16  Score=53.60  Aligned_cols=96  Identities=13%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|..||+|.+|.+- ..|++   .|.+|+.+|++++.++...+. +..|   .++.. ..|..++...+...|+|++.-
T Consensus         3 m~IgvIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~-~~~g---~gi~~-~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLAN-EAKG---TKVLG-AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHT-TTTT---SSCEE-CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHhc-cccC---CCeEE-eCCHHHHHhhccCCCEEEEeC
Confidence            589999999888763 33444   467899999999887665441 0112   12332 334433332234689999852


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      -.+  ..-..+++.+.+.++||.+|+.
T Consensus        75 p~~--~~v~~vl~~l~~~l~~g~iII~   99 (482)
T 2pgd_A           75 KAG--QAVDNFIEKLVPLLDIGDIIID   99 (482)
T ss_dssp             CTT--HHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCh--HHHHHHHHHHHhhcCCCCEEEE
Confidence            221  2456788899999999886654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.93  E-value=0.13  Score=50.67  Aligned_cols=99  Identities=15%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-----cCCCeEEEEccccccccCCC-Ccc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDE-----IEKRMKFLTCDIMEVKEKLG-EYD  205 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-----Ls~rI~Fi~GDA~el~~dL~-~FD  205 (535)
                      ++|+.||+|.+|.+--. |++   .|..|+.++.++ . +..+    +.|.     ....+++....+..-+.+.. .+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~-~-~~i~----~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK---TGHCVSVVSRSD-Y-ETVK----AKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---TTCEEEEECSTT-H-HHHH----HHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCh-H-HHHH----hCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            69999999988876433 334   578999999987 2 2222    2230     00123331111111112223 699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEccccc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA  244 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl  244 (535)
                      +|+++ .+..  +-..+++.+.+.++|+..++.-. .|+
T Consensus        74 lVila-vK~~--~~~~~l~~l~~~l~~~t~Iv~~~-nGi  108 (320)
T 3i83_A           74 CTLLC-IKVV--EGADRVGLLRDAVAPDTGIVLIS-NGI  108 (320)
T ss_dssp             EEEEC-CCCC--TTCCHHHHHTTSCCTTCEEEEEC-SSS
T ss_pred             EEEEe-cCCC--ChHHHHHHHHhhcCCCCEEEEeC-CCC
Confidence            99996 4432  23468899999999988766533 454

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=92.92  E-value=0.47  Score=53.33  Aligned_cols=100  Identities=17%  Similarity=0.287  Sum_probs=71.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-----------CC--cCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-----------DE--IEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-----------G~--Ls~rI~Fi~GDA~el~~  199 (535)
                      ++|.-||+|.+|-.--..+-  ..|..|+-+|+++++++.+++.+...           +.  ...++++ +.|    ..
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a--~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~----~~  389 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA--RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSS----TK  389 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESC----GG
T ss_pred             cEEEEEcccHHHHHHHHHHH--hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCc----HH
Confidence            69999999987654322222  37899999999999999998865421           10  1123433 222    22


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++.+.|+|+=+ ...-.+-|.++|.++-++++|+.+|...+
T Consensus       390 ~l~~aDlVIEA-V~E~l~iK~~vf~~le~~~~~~aIlASNT  429 (742)
T 3zwc_A          390 ELSTVDLVVEA-VFEDMNLKKKVFAELSALCKPGAFLCTNT  429 (742)
T ss_dssp             GGGSCSEEEEC-CCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHhhCCEEEEe-ccccHHHHHHHHHHHhhcCCCCceEEecC
Confidence            34678988853 44446889999999999999999998876

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.85  E-value=0.092  Score=50.73  Aligned_cols=90  Identities=12%  Similarity=0.037  Sum_probs=57.7

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||+|.+|.+- ..+++   .|.+|+++|++++.++...+.    | .    .+ ..|..++.   ...|+|++.-
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~~----g-~----~~-~~~~~~~~---~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR---AGFDVTVWNRNPAKCAPLVAL----G-A----RQ-ASSPAEVC---AACDITIAML   65 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH---HTCCEEEECSSGGGGHHHHHH----T-C----EE-CSCHHHHH---HHCSEEEECC
T ss_pred             CeEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHC----C-C----ee-cCCHHHHH---HcCCEEEEEc
Confidence            479999999998763 34444   467899999999887665432    5 1    22 23333322   3479999853


Q ss_pred             ccCChhhHHHHH---HHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKIL---GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL---~eL~rvLKPGGvLVvRs  240 (535)
                      -..  ..-..++   +.+.+.++||.+++--+
T Consensus        66 ~~~--~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           66 ADP--AAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             SSH--HHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             CCH--HHHHHHHcCchhhhhcccCCCEEEECC
Confidence            221  1334556   66778889988776544

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.82  E-value=0.098  Score=52.66  Aligned_cols=96  Identities=13%  Similarity=0.174  Sum_probs=57.7

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCC-------cEEEEEeCChh-----HHHHHHHHH---hhc-CC-cCCCeEEEEccc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKS-------THFDNIDIDET-----ANNLARRIV---SSD-DE-IEKRMKFLTCDI  194 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~G-------a~VtGIDIDpe-----AIelAR~li---~~l-G~-Ls~rI~Fi~GDA  194 (535)
                      ++|.+||+|.+|.+- ..|++   .|       ..|+.+|.+++     .++.-++.-   ... |. +..++.+ +.|.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~---~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-~~~~   97 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT---NAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA-HSDL   97 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH---HHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE-ESST
T ss_pred             CEEEEECcCHHHHHHHHHHHH---cCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE-ECCH
Confidence            589999999888763 33444   34       68999999987     444332211   000 10 1123433 2232


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHh----hcccCeEEEE
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRK----YMKEGGVLLV  238 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~r----vLKPGGvLVv  238 (535)
                      .+.   ..+.|+||++ ...  .....++..+..    .++||.+++.
T Consensus        98 ~ea---~~~aDvVila-v~~--~~~~~vl~~i~~~~~~~l~~~~ivvs  139 (375)
T 1yj8_A           98 ASV---INDADLLIFI-VPC--QYLESVLASIKESESIKIASHAKAIS  139 (375)
T ss_dssp             HHH---HTTCSEEEEC-CCH--HHHHHHHHHHTC---CCCCTTCEEEE
T ss_pred             HHH---HcCCCEEEEc-CCH--HHHHHHHHHHhhhhhccCCCCCEEEE
Confidence            221   2468999996 332  567778888877    8888877654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.75  E-value=0.063  Score=53.34  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC---CCeEEEE-ccccccccCCCCcce
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE---KRMKFLT-CDIMEVKEKLGEYDC  206 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls---~rI~Fi~-GDA~el~~dL~~FDv  206 (535)
                      .++|+.||+|.+|.+-. .|++   .|..|+.+|.+ +.++.    +++.| +.   ....+.. ..+.+-+....++|+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~---~g~~V~~~~r~-~~~~~----~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~D~   73 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLAL---AGEAINVLARG-ATLQA----LQTAG-LRLTEDGATHTLPVRATHDAAALGEQDV   73 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHH---TTCCEEEECCH-HHHHH----HHHTC-EEEEETTEEEEECCEEESCHHHHCCCSE
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCEEEEEECh-HHHHH----HHHCC-CEEecCCCeEEEeeeEECCHHHcCCCCE
Confidence            47999999998887643 3444   56789999986 43332    23344 21   0111110 001101112356999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+++ ...  .+-..+++.+.+.++|+.+|+.
T Consensus        74 Vila-vk~--~~~~~~~~~l~~~l~~~~~iv~  102 (335)
T 3ghy_A           74 VIVA-VKA--PALESVAAGIAPLIGPGTCVVV  102 (335)
T ss_dssp             EEEC-CCH--HHHHHHHGGGSSSCCTTCEEEE
T ss_pred             EEEe-CCc--hhHHHHHHHHHhhCCCCCEEEE
Confidence            9996 332  3556777778888888877665

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.75  E-value=0.15  Score=50.45  Aligned_cols=89  Identities=18%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCCChhhHHH-HHhhcCCC----cEEEEEeCChh--HHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          131 QLKKVAFVGSGPMPLTSII-LASQHMKS----THFDNIDIDET--ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~-LAk~~l~G----a~VtGIDIDpe--AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ..++|.+||+|.+|.+-.. |++   .|    ..|+.+|.+++  .++..+    ..|     +.+ ..|..+.   ...
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~---~G~~~~~~V~v~~r~~~~~~~~~l~----~~G-----~~~-~~~~~e~---~~~   84 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTA---AGVLAAHKIMASSPDMDLATVSALR----KMG-----VKL-TPHNKET---VQH   84 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHH---TTSSCGGGEEEECSCTTSHHHHHHH----HHT-----CEE-ESCHHHH---HHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH---CCCCCcceEEEECCCccHHHHHHHH----HcC-----CEE-eCChHHH---hcc
Confidence            3468999999988766432 333   34    67999999986  554433    346     232 2333222   235


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .|+||++- ..  .....++..+...++||.+|+.
T Consensus        85 aDvVilav-~~--~~~~~vl~~l~~~l~~~~ivvs  116 (322)
T 2izz_A           85 SDVLFLAV-KP--HIIPFILDEIGADIEDRHIVVS  116 (322)
T ss_dssp             CSEEEECS-CG--GGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCEEEEEe-CH--HHHHHHHHHHHhhcCCCCEEEE
Confidence            89999963 32  5678889999888988876654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=92.53  E-value=0.3  Score=49.32  Aligned_cols=72  Identities=17%  Similarity=0.231  Sum_probs=50.5

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCC--CcceEE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLG--EYDCII  208 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~--~FDvVf  208 (535)
                      +.+|+|+-||.+|++. -+...-..-..|.++|+|+.+++..+.++..       ..++++|+.++.. .+.  .+|+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~-g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-------~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            2 PLRVLELYSGVGGMHH-ALRESCIPAQVVAAIDVNTVANEVYKYNFPH-------TQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHH-HHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCeEEEeCcCccHHHH-HHHHCCCCceEEEEEeCCHHHHHHHHHhccc-------cccccCCHHHccHhHcCcCCcCEEE
Confidence            4689999999877664 4444211113699999999999999998643       2367899887642 122  589999


Q ss_pred             ecc
Q 041205          209 LAA  211 (535)
Q Consensus       209 iaA  211 (535)
                      ...
T Consensus        74 ~gp   76 (343)
T 1g55_A           74 MSP   76 (343)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.52  E-value=0.62  Score=46.15  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=57.6

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH-HHHhh---cCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR-RIVSS---DDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR-~li~~---lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ++|.-||+|.+|.+..........+.+|+.+|++++.++.-. .+...   .+ ...++.+ +.|..    ++.+.|+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~-t~d~~----~l~~aDvVi   74 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL-FDTKVTG-SNDYA----DTANSDIVI   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT-CCCEEEE-ESCGG----GGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhccc-CCcEEEE-CCCHH----HHCCCCEEE
Confidence            489999999998875554432213789999999998776321 12111   12 1122332 23432    256789999


Q ss_pred             ecccc----CC-hhh--------HHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALA----GN-EEE--------KAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALV----gm-~ed--------K~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++...    |+ ..+        ...+.+.+.++ .|+|.+++-
T Consensus        75 iav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~  117 (310)
T 1guz_A           75 ITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVV  117 (310)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEC
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence            97644    22 111        13455555555 577776653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=92.43  E-value=0.19  Score=53.48  Aligned_cols=112  Identities=8%  Similarity=0.012  Sum_probs=72.9

Q ss_pred             chhhHHhHHHHHHHHHHhhC-CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENTG-VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~~-l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|+..+.+.=...+.+..+ .-.+++|..||.|.+|.....+++.  .|++|+++|+++.....|.    ..| .    
T Consensus       187 ~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka--~Ga~Viv~D~~p~~a~~A~----~~G-~----  255 (436)
T 3h9u_A          187 FDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRG--FGARVVVTEVDPINALQAA----MEG-Y----  255 (436)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HTT-C----
T ss_pred             hhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEECCChhhhHHHH----HhC-C----
Confidence            57777666655566555443 3478999999999999988888773  5899999999987654443    345 2    


Q ss_pred             EEEEccccccccCCCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ++  .+..+   -+...|+|++...- ++..      .+..+.||||++|+ .-++|
T Consensus       256 ~~--~sL~e---al~~ADVVilt~gt~~iI~------~e~l~~MK~gAIVI-NvgRg  300 (436)
T 3h9u_A          256 QV--LLVED---VVEEAHIFVTTTGNDDIIT------SEHFPRMRDDAIVC-NIGHF  300 (436)
T ss_dssp             EE--CCHHH---HTTTCSEEEECSSCSCSBC------TTTGGGCCTTEEEE-ECSSS
T ss_pred             ee--cCHHH---HHhhCCEEEECCCCcCccC------HHHHhhcCCCcEEE-EeCCC
Confidence            22  23333   33568999975322 2211      24466799998764 44454

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=92.42  E-value=0.53  Score=47.02  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             CEEEEEcc-CCChhhHHHHHhhcCCC--cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc--cccccccCCCCcceE
Q 041205          133 KKVAFVGS-GPMPLTSIILASQHMKS--THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC--DIMEVKEKLGEYDCI  207 (535)
Q Consensus       133 kRVLeIGS-GplPlTAI~LAk~~l~G--a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G--DA~el~~dL~~FDvV  207 (535)
                      +||+-||+ |.+|.+......  ..+  .+|+.+|+++ +-..+..+.....  ..++++..+  |..   ..+.+.|+|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~--~~~~~~ev~L~Di~~-~~~~a~dL~~~~~--~~~l~~~~~t~d~~---~a~~~aDvV   72 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK--NSPLVSRLTLYDIAH-TPGVAADLSHIET--RATVKGYLGPEQLP---DCLKGCDVV   72 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH--TCTTCSEEEEEESSS-HHHHHHHHTTSSS--SCEEEEEESGGGHH---HHHTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHH--hCCCCcEEEEEeCCc-cHHHHHHHhccCc--CceEEEecCCCCHH---HHhCCCCEE
Confidence            48999997 999998665543  234  6899999998 4444444433221  123554433  322   224678999


Q ss_pred             EeccccC----C-hhhH----HHHHHHHHhh---cccCeEEEEE
Q 041205          208 ILAALAG----N-EEEK----AKILGHIRKY---MKEGGVLLVR  239 (535)
Q Consensus       208 fiaALVg----m-~edK----~~VL~eL~rv---LKPGGvLVvR  239 (535)
                      |+.+.+.    + ..+.    ..++.++.+.   ..|+|++++-
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  116 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII  116 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            9987653    2 1111    1334444332   2588877774

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.35  E-value=0.23  Score=46.27  Aligned_cols=76  Identities=12%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ..++|..||+|.+|.+-.....  ..|.+|+.+|.+++                               ...+.|+|+++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~--~~g~~V~~~~~~~~-------------------------------~~~~aD~vi~a   64 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFE--IAGHEVTYYGSKDQ-------------------------------ATTLGEIVIMA   64 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHH--HTTCEEEEECTTCC-------------------------------CSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEcCCHH-------------------------------HhccCCEEEEc
Confidence            4579999999988766433222  15678999998876                               12457999986


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEccccc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGA  244 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~Gl  244 (535)
                      .-.   .....++..+.+.++ |.+++ ....|+
T Consensus        65 v~~---~~~~~v~~~l~~~~~-~~~vi-~~~~g~   93 (209)
T 2raf_A           65 VPY---PALAALAKQYATQLK-GKIVV-DITNPL   93 (209)
T ss_dssp             SCH---HHHHHHHHHTHHHHT-TSEEE-ECCCCB
T ss_pred             CCc---HHHHHHHHHHHHhcC-CCEEE-EECCCC
Confidence            332   456678888888887 66554 444443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.34  E-value=0.033  Score=48.40  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE-EccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfi  209 (535)
                      .+++|+.||+|.+|........  ..|.+|+.+|++++..+   ++.+..| .    .+. ..+..+   ...++|+|+.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~--~~g~~v~v~~r~~~~~~---~~a~~~~-~----~~~~~~~~~~---~~~~~Divi~   86 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFS--YPQYKVTVAGRNIDHVR---AFAEKYE-Y----EYVLINDIDS---LIKNNDVIIT   86 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCC--TTTCEEEEEESCHHHHH---HHHHHHT-C----EEEECSCHHH---HHHTCSEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCHHHHH---HHHHHhC-C----ceEeecCHHH---HhcCCCEEEE
Confidence            4899999999976665443322  35778999999987654   3444445 1    222 222222   2246899998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +...+.     .++.  ...++||+.++-
T Consensus        87 at~~~~-----~~~~--~~~l~~g~~vid  108 (144)
T 3oj0_A           87 ATSSKT-----PIVE--ERSLMPGKLFID  108 (144)
T ss_dssp             CSCCSS-----CSBC--GGGCCTTCEEEE
T ss_pred             eCCCCC-----cEee--HHHcCCCCEEEE
Confidence            654421     0111  245777776643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.31  E-value=0.35  Score=52.14  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             chhhHHhHHHHHHHHHHhhCC-CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe
Q 041205          109 YENYVKLAKLEYGALIENTGV-AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM  187 (535)
Q Consensus       109 y~NYv~LirlE~~lL~~~~~l-~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI  187 (535)
                      |+|...+.+.-...+.+..+. -.+++|+-+|.|++|......+..  .|++|+.+|+++.....+..    .| .    
T Consensus       241 fDn~yGt~~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa--~GA~Viv~D~~~~~a~~Aa~----~g-~----  309 (488)
T 3ond_A          241 FDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQ--AGARVIVTEIDPICALQATM----EG-L----  309 (488)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TT-C----
T ss_pred             hhhhccccHHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----hC-C----
Confidence            466655655555555554432 478999999999888877666553  68999999999987655543    34 1    


Q ss_pred             EEEEccccccccCCCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEE
Q 041205          188 KFLTCDIMEVKEKLGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       188 ~Fi~GDA~el~~dL~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+  .+.   ..-...+|+|+..... +.      +-....+.|++|++|+-
T Consensus       310 dv--~~l---ee~~~~aDvVi~atG~~~v------l~~e~l~~mk~gaiVvN  350 (488)
T 3ond_A          310 QV--LTL---EDVVSEADIFVTTTGNKDI------IMLDHMKKMKNNAIVCN  350 (488)
T ss_dssp             EE--CCG---GGTTTTCSEEEECSSCSCS------BCHHHHTTSCTTEEEEE
T ss_pred             cc--CCH---HHHHHhcCEEEeCCCChhh------hhHHHHHhcCCCeEEEE
Confidence            11  222   2223468988865332 11      11224667999987754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=92.28  E-value=0.37  Score=51.38  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             CCEEEEEccCCChhhHH--HHHhh--cCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEE-ccccccccCCCCc
Q 041205          132 LKKVAFVGSGPMPLTSI--ILASQ--HMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLT-CDIMEVKEKLGEY  204 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI--~LAk~--~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~-GDA~el~~dL~~F  204 (535)
                      .++|..||+|....+++  .++.+  -+++.+|+-+|++++.++....+....  + .....++.. .|..   ..+.+.
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~-~~~~~~I~~t~D~~---eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-KAPDIEFAATTDPE---EAFTDV  103 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-HCTTSEEEEESCHH---HHHSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCCCCEEEEECCHH---HHHcCC
Confidence            46999999997634433  46553  244778999999999877655443332  1 112344443 4532   233578


Q ss_pred             ceEEeccccC
Q 041205          205 DCIILAALAG  214 (535)
Q Consensus       205 DvVfiaALVg  214 (535)
                      |+|++.+.++
T Consensus       104 D~VViaag~~  113 (472)
T 1u8x_X          104 DFVMAHIRVG  113 (472)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEEcCCCc
Confidence            9999988774

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.26  E-value=0.22  Score=49.21  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=57.6

Q ss_pred             CCEEEEEccCCChhhH-HHHHhhcCCCc-EEEEEeCC--hhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTS-IILASQHMKST-HFDNIDID--ETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTA-I~LAk~~l~Ga-~VtGIDID--peAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .++|.+||+|.+|.+- ..|++   .|. .|+++|++  ++..+.+.    ..|     +.+ ..+..+..   ...|+|
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~---~G~~~V~~~dr~~~~~~~~~~~----~~g-----~~~-~~~~~e~~---~~aDvV   87 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQ---AGAIDMAAYDAASAESWRPRAE----ELG-----VSC-KASVAEVA---GECDVI   87 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH---HSCCEEEEECSSCHHHHHHHHH----HTT-----CEE-CSCHHHHH---HHCSEE
T ss_pred             CCEEEEECccHHHHHHHHHHHH---CCCCeEEEEcCCCCHHHHHHHH----HCC-----CEE-eCCHHHHH---hcCCEE
Confidence            4799999999888653 23434   366 89999997  46555433    345     222 22332222   357999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |+.---   ..-.+++..+...+++|.+|+--+
T Consensus        88 i~~vp~---~~~~~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           88 FSLVTA---QAALEVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             EECSCT---TTHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEecCc---hhHHHHHHhhHhhcCCCCEEEEcC
Confidence            986333   234457899999999998776543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=92.25  E-value=0.51  Score=46.31  Aligned_cols=95  Identities=11%  Similarity=0.077  Sum_probs=56.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEE-EeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDN-IDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtG-IDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+..||..||||.+|..-+.......++.++++ +|.+++..+   ++.++.| ..   . ...|..++..+ .+.|+|+
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~---~~a~~~g-~~---~-~~~~~~~~l~~-~~~D~V~   76 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLE---WAKNELG-VE---T-TYTNYKDMIDT-ENIDAIF   76 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHH---HHHHTTC-CS---E-EESCHHHHHTT-SCCSEEE
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH---HHHHHhC-CC---c-ccCCHHHHhcC-CCCCEEE
Confidence            346799999999988654333221246888765 599987653   3444556 21   1 23565554432 3699999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +..-..      ...+.+...|+.|-.+++.
T Consensus        77 i~tp~~------~h~~~~~~al~~G~~v~~e  101 (346)
T 3cea_A           77 IVAPTP------FHPEMTIYAMNAGLNVFCE  101 (346)
T ss_dssp             ECSCGG------GHHHHHHHHHHTTCEEEEC
T ss_pred             EeCChH------hHHHHHHHHHHCCCEEEEc
Confidence            874432      2233444567777666663

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.18  E-value=0.22  Score=52.91  Aligned_cols=102  Identities=13%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CCEEEEEccCCChh-hHHHHHhhcCCCcEEEEEeCChhHHHHHHH------------HHhhcCCcCCCeEEEEccccccc
Q 041205          132 LKKVAFVGSGPMPL-TSIILASQHMKSTHFDNIDIDETANNLARR------------IVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       132 pkRVLeIGSGplPl-TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~------------li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      -.+|.-||.|=+|+ +|.+||+   .|-+|+|+|+|++.++.=++            ++++.- -+.+++|. .|..+  
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~---~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~-~~g~l~~t-t~~~~--   93 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFAL---LGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRAL-SSGRLSFA-ESAEE--   93 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---HTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEC-SSHHH--
T ss_pred             CCEEEEEccCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HcCCeeEE-cCHHH--
Confidence            36899999998886 5677887   57899999999998876432            222110 01355552 33222  


Q ss_pred             cCCCCcceEEecccc-----CC--hhhHHHHHHHHHhhccc---CeEEEEEcc
Q 041205          199 EKLGEYDCIILAALA-----GN--EEEKAKILGHIRKYMKE---GGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALV-----gm--~edK~~VL~eL~rvLKP---GGvLVvRsa  241 (535)
                       .....|++|+.---     +-  ...-..+.+.+.+.|++   |.++++.+.
T Consensus        94 -ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eST  145 (444)
T 3vtf_A           94 -AVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKST  145 (444)
T ss_dssp             -HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSC
T ss_pred             -HHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence             12346888875211     00  12346677888888875   457777774

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.09  E-value=0.11  Score=52.75  Aligned_cols=90  Identities=12%  Similarity=0.026  Sum_probs=59.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|..||.|.+|.+....++  ..|.+|+++|.++.. +    .....| .    ++  .+..++   +...|+|++
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~--~~G~~V~~~d~~~~~-~----~~~~~g-~----~~--~~l~el---l~~aDvV~l  225 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQ--SFGMKTIGYDPIISP-E----VSASFG-V----QQ--LPLEEI---WPLCDFITV  225 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSCH-H----HHHHTT-C----EE--CCHHHH---GGGCSEEEE
T ss_pred             CCcCEEEEEeECHHHHHHHHHHH--HCCCEEEEECCCcch-h----hhhhcC-c----ee--CCHHHH---HhcCCEEEE
Confidence            46789999999999888766666  368999999998765 2    233456 2    22  233332   246899998


Q ss_pred             ccccCChhhHHHHH-HHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL-~eL~rvLKPGGvLVv  238 (535)
                      ..-..  ++-..++ +...+.||||++|+-
T Consensus       226 ~~P~t--~~t~~li~~~~l~~mk~gailIN  253 (335)
T 2g76_A          226 HTPLL--PSTTGLLNDNTFAQCKKGVRVVN  253 (335)
T ss_dssp             CCCCC--TTTTTSBCHHHHTTSCTTEEEEE
T ss_pred             ecCCC--HHHHHhhCHHHHhhCCCCcEEEE
Confidence            64442  2223334 456778999987754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=91.94  E-value=0.13  Score=64.48  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=71.3

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe-EEEEccccc-ccc--CC
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM-KFLTCDIME-VKE--KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI-~Fi~GDA~e-l~~--dL  201 (535)
                      ..+.++++||-.| +|++|..++.+|+.  .|++|++++.+++..+.+++....+| . +.| .....|..+ +..  .-
T Consensus      1663 a~l~~Ge~VLI~gaaGgVG~aAiqlAk~--~Ga~Viat~~s~~k~~~l~~~~~~lg-a-~~v~~~~~~~~~~~i~~~t~g 1738 (2512)
T 2vz8_A         1663 GRMQPGESVLIHSGSGGVGQAAIAIALS--RGCRVFTTVGSAEKRAYLQARFPQLD-E-TCFANSRDTSFEQHVLRHTAG 1738 (2512)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTCC-S-TTEEESSSSHHHHHHHHTTTS
T ss_pred             hcCCCCCEEEEEeCChHHHHHHHHHHHH--cCCEEEEEeCChhhhHHHHhhcCCCC-c-eEEecCCCHHHHHHHHHhcCC
Confidence            3578999999996 59999999999994  68999999999988888776554445 2 222 111111111 111  11


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++|+|+-. . +     ...+....+.|+|||+++.-.
T Consensus      1739 ~GvDvVld~-~-g-----~~~l~~~l~~L~~~Gr~V~iG 1770 (2512)
T 2vz8_A         1739 KGVDLVLNS-L-A-----EEKLQASVRCLAQHGRFLEIG 1770 (2512)
T ss_dssp             CCEEEEEEC-C-C-----HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEEC-C-C-----chHHHHHHHhcCCCcEEEEee
Confidence            359999864 2 2     345888999999999988743

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=91.91  E-value=0.08  Score=52.91  Aligned_cols=91  Identities=18%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++|..||.|.+|.+....++.  .|.+|+++|.+++. +.+    ...| .    ++  .+..++.   ...|+|++
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~d~~~~~-~~~----~~~g-~----~~--~~l~ell---~~aDvV~l  202 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANA--LGMNILLYDPYPNE-ERA----KEVN-G----KF--VDLETLL---KESDVVTI  202 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCH-HHH----HHTT-C----EE--CCHHHHH---HHCSEEEE
T ss_pred             cCCceEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCCh-hhH----hhcC-c----cc--cCHHHHH---hhCCEEEE
Confidence            467899999999998887666663  58999999999876 322    3445 2    22  2333322   35799998


Q ss_pred             ccccCChhhHHHHH-HHHHhhcccCeEEEEE
Q 041205          210 AALAGNEEEKAKIL-GHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 aALVgm~edK~~VL-~eL~rvLKPGGvLVvR  239 (535)
                      ..-..  ++-..++ +.....||||++|+--
T Consensus       203 ~~p~~--~~t~~li~~~~l~~mk~ga~lin~  231 (307)
T 1wwk_A          203 HVPLV--ESTYHLINEERLKLMKKTAILINT  231 (307)
T ss_dssp             CCCCS--TTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred             ecCCC--hHHhhhcCHHHHhcCCCCeEEEEC
Confidence            64432  2222333 3456689999887653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.88  E-value=0.11  Score=51.14  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..-++|.+||+|.+|.+- ..|++   .|..|+++|++++.++...    ..| .    .+ ..+..++.   ...|+||
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~~~~~l~----~~g-~----~~-~~~~~~~~---~~aDvvi   82 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLK---NGFKVTVWNRTLSKCDELV----EHG-A----SV-CESPAEVI---KKCKYTI   82 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHH----HTT-C----EE-CSSHHHHH---HHCSEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHH----HCC-C----eE-cCCHHHHH---HhCCEEE
Confidence            345799999999888753 33334   5789999999998876654    335 2    22 23333222   3479999


Q ss_pred             eccccCChhhHHHHH---HHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKIL---GHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL---~eL~rvLKPGGvLVvRs  240 (535)
                      +.-...  ..-..++   +.+...+++|.+|+--+
T Consensus        83 ~~vp~~--~~~~~v~~~~~~l~~~l~~g~~vv~~s  115 (310)
T 3doj_A           83 AMLSDP--CAALSVVFDKGGVLEQICEGKGYIDMS  115 (310)
T ss_dssp             ECCSSH--HHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             EEcCCH--HHHHHHHhCchhhhhccCCCCEEEECC
Confidence            853221  2334556   66778889988776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	0.004

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC 192
           K  A +G G          +   +S    +ID         R  + ++            
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61

Query: 193 DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA--KGARAFLYP 250
              ++   + + D I++          A I  +I  Y+ EG ++++      GA  F   
Sbjct: 62  LTSDIGLAVKDADVILIVV---PAIHHASIAANIASYISEGQLIILNPGATGGALEFRKI 118

Query: 251 VVEHELFDFKVLSIFHP 267
           + E+   +  +      
Sbjct: 119 LRENGAPEVTIGETSSM 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.76
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.74
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.69
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.68
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.68
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.62
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.6
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.59
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.59
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.58
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.57
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.55
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.52
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.5
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.5
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.5
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.49
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.49
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.48
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.46
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.44
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.44
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.43
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.4
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.39
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.38
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.37
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.36
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.32
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.32
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.3
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.29
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.28
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.28
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.22
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.22
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.2
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.2
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.14
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.09
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.09
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.07
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.04
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.96
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.95
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.93
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.93
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.88
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.86
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.86
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.84
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.82
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.82
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.77
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.74
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.69
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.69
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.68
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.59
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.57
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.5
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.49
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.45
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.44
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.32
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.21
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.19
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.19
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.19
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.17
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.17
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.13
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.06
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.03
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.99
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.97
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.96
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.93
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.83
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.82
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.77
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.63
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.56
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.55
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.5
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.47
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.43
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.36
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.35
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.28
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.02
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.01
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.91
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.9
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.83
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.77
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.63
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.41
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.3
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.56
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.54
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.39
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.39
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.36
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.34
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.21
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.08
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.95
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.82
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.8
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.44
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.21
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.96
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.88
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.52
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.4
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.39
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.21
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.92
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.91
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.82
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.75
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	92.6
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.58
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.39
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.05
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.73
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	91.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.28
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	90.78
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	90.61
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.53
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.4
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.04
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	89.86
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.57
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.44
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.94
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.83
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.69
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.44
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	88.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	87.9
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.19
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.1
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	86.92
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.51
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.99
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	85.86
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	85.66
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.24
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	85.08
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.91
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	84.64
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.08
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.7
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.43
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.39
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	83.33
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.83
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.4
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.31
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	82.22
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	81.62
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.52
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	81.3
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	81.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	80.11

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.76  E-value=2.2e-18  Score=164.77  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+....++.++++|||||||+ |..++.||++  .|++|+|||+++.+++.|++.....| +.++++|+++|+.+++.+
T Consensus        57 ~~l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~~l~~~  132 (282)
T d2o57a1          57 SELAMTGVLQRQAKGLDLGAGY-GGAARFLVRK--FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCE  132 (282)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCC-cHHHhhhhcc--CCcEEEEEeccchhhhhhhccccccc-cccccccccccccccccc
Confidence            3344445678999999999996 6667788874  47899999999999999999999999 889999999999999888


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+|+.....+..+++.++|.++.++|||||+|++.+
T Consensus       133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            7889999976444334789999999999999999999865

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.5e-18  Score=162.48  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc
Q 041205          116 AKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM  195 (535)
Q Consensus       116 irlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~  195 (535)
                      ....+..+...+++.++++|||||||+ |..++.+|++  .|++|+|||+|+.+++.|++.++..| ++++|+|+++|+.
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~--~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~v~~~~~d~~   93 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGS-GEMLCTWARD--HGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAA   93 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHH--TCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCT
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHh--cCCEEEEEecccchhhHHHHHHHHhh-ccccchhhhhHHh
Confidence            344566677778889999999999997 5566777773  57899999999999999999999999 7899999999998


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++. ..+.||+|+.....+..+++..++++++++|||||++++...
T Consensus        94 ~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          94 GYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             TCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            864 456799999764443357899999999999999999999653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.75  E-value=2.5e-18  Score=157.21  Aligned_cols=113  Identities=15%  Similarity=0.204  Sum_probs=96.7

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+...+++++++||||||||+ |..++.+++   .+++|+|+|+|+++++.|++.+...| . .+++|+++|+.+++.+.
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~i~~A~~~~~~~~-~-~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGG-GHVANAFAP---FVKKVVAFDLTEDILKVARAFIEGNG-H-QQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTT-CHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCC-CCCSCT
T ss_pred             HHHHhcCCCCcCEEEEecccC-cHHHHHHHH---hCCEEEEEECCHHHHhhhhhcccccc-c-ccccccccccccccccc
Confidence            344556789999999999996 666788888   36899999999999999999999988 3 78999999999988777


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||+|++...+++.+++..+|.++.++|||||++++.+
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            889999987666556889999999999999999998854

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=4.6e-18  Score=157.76  Aligned_cols=113  Identities=13%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      ++...+.+++++||||||||+ |..+..+|+   .+++|+|||+|+.+++.|++.+...| + +++.|+++|+.+++++.
T Consensus         7 ~l~~~~~~~~~~rILDiGcGt-G~~~~~la~---~~~~v~gvD~S~~~l~~A~~~~~~~~-~-~~~~~~~~d~~~~~~~~   80 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTAESLPFPD   80 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBTTBCCSCT
T ss_pred             HHHHHhCCCCCCEEEEeCCcC-cHHHHHHHH---hCCeEEEEeCChhhhhhhhhhhcccc-c-ccccccccccccccccc
Confidence            455567789999999999996 666778888   35799999999999999999999988 4 68999999999988877


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.||+|++...+++.+++..+++++.++|||||++++..
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            889999987555445789999999999999999988853

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=3.4e-17  Score=147.68  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             HHhHHHHHHHHHHhh--CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          113 VKLAKLEYGALIENT--GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       113 v~LirlE~~lL~~~~--~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      ...-+.++..+..++  -+.+..||||||||+ |..++.+|+   .|.+|+|+|+|+++++.|++.+...+   ..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~ILDiGcG~-G~~~~~la~---~~~~v~giD~S~~~i~~ak~~~~~~~---~~~~~~   89 (226)
T d1ve3a1          17 SQEYRSRIETLEPLLMKYMKKRGKVLDLACGV-GGFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFI   89 (226)
T ss_dssp             SHHHHHHHHHHHHHHHHSCCSCCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEECCCc-chhhhhHhh---hhcccccccccccchhhhhhhhcccc---cccccc
Confidence            333344444443333  146788999999996 677788988   68999999999999999999998877   468999


Q ss_pred             EccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          191 TCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       191 ~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++|+.+++...+.||+|++...+++  ..+..++|+++.++|||||++++...
T Consensus        90 ~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          90 VGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            9999998888788999998766543  45788899999999999999988654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=6.5e-17  Score=147.05  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=100.4

Q ss_pred             HHHHH-HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc
Q 041205          116 AKLEY-GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI  194 (535)
Q Consensus       116 irlE~-~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA  194 (535)
                      ++.|. .++...+.+.++++|||||||+ |..++.+|+   .+.+|+|+|+|+++++.|++++++.| +.+++++++||+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGs-G~~s~~lA~---~~~~V~avD~~~~~l~~a~~n~~~~g-l~~~v~~~~gda   91 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGT-GGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDA   91 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCe-Ecccccccc---cceEEEEecCCHHHHHHHHHHHHHcC-CCcceEEEECch
Confidence            45554 5556666789999999999996 566688888   46799999999999999999999999 888999999999


Q ss_pred             cccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 MEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+...+...||.||+....   .+..++++.+.++|||||.+++..
T Consensus        92 ~~~~~~~~~~D~v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcccccCCcCEEEEeCcc---ccchHHHHHHHHHhCcCCEEEEEe
Confidence            9888888889999987655   456789999999999999998754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=1.8e-16  Score=146.47  Aligned_cols=105  Identities=22%  Similarity=0.424  Sum_probs=89.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ...++++|||||||+ |..++.|++   .|.+|+|||+|++|++.|++.+...+ +  +++|+++|+.+++.+ +.||+|
T Consensus        38 ~~~~~~~iLDiGcGt-G~~~~~l~~---~~~~v~gvD~s~~mi~~a~~~~~~~~-~--~i~~~~~d~~~l~~~-~~fD~I  109 (251)
T d1wzna1          38 AKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERN-L--KIEFLQGDVLEIAFK-NEFDAV  109 (251)
T ss_dssp             CSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C--CCEEEESCGGGCCCC-SCEEEE
T ss_pred             cCCCCCEEEEeCCCC-Cccchhhcc---cceEEEEEeecccccccccccccccc-c--cchheehhhhhcccc-cccchH
Confidence            447788999999996 677788888   57899999999999999999999888 3  799999999987765 579999


Q ss_pred             Eecc--ccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAA--LAGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaA--LVgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++..  ..++ .++...+|++++++|||||++++..
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9753  2334 5788899999999999999999854

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.7e-17  Score=152.74  Aligned_cols=128  Identities=17%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      +-..+..++....+++||||||| .|+|+++||.....+++|+++|+|++..+.|++++++.| ++++|+++.||+.+..
T Consensus        47 ~g~lL~~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda~e~l  124 (219)
T d2avda1          47 QAQLLANLARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeehhhcc
Confidence            33444444556789999999999 699999999965568999999999999999999999999 8999999999997754


Q ss_pred             cC------CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCC
Q 041205          199 EK------LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPV  251 (535)
Q Consensus       199 ~d------L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~  251 (535)
                      ..      .+.||+||+++.+   ..+..+++.+.+.|+|||++++++...-..+..|.
T Consensus       125 ~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~  180 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPP  180 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCC
T ss_pred             hhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcc
Confidence            32      3569999999888   68999999999999999999999974333455553

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.67  E-value=1e-16  Score=153.27  Aligned_cols=125  Identities=15%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..|..++....+++||||||| .|+|+++||+...++++|+++|+|++.++.|++++++.| +.++|+++.||+.+....
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          49 QFLSMLLKLINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHHHHHHHHHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-cccceeeeehHHHHHHHH
Confidence            334444456789999999998 799999999965568999999999999999999999999 889999999999876543


Q ss_pred             -------CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCC
Q 041205          201 -------LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYP  250 (535)
Q Consensus       201 -------L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP  250 (535)
                             .+.||+||+|+.+   ..+..+++.+.+.|+|||++++++.-.-..+.-|
T Consensus       127 l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~  180 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP  180 (227)
T ss_dssp             HHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCC
T ss_pred             HHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCC
Confidence                   2469999999988   6899999999999999999999996322244444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=7.8e-16  Score=142.07  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=97.5

Q ss_pred             CccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcC
Q 041205          106 FPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIE  184 (535)
Q Consensus       106 FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls  184 (535)
                      -|+|+....++..   .+..+  +.++.+|||||||+ |..++.++++. .++++|+|||+|++|++.|++.++..+ ..
T Consensus        19 iP~Y~~~~~~i~~---~~~~~--~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~   91 (225)
T d1im8a_          19 VPGYSNIITAIGM---LAERF--VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SE   91 (225)
T ss_dssp             STTHHHHHHHHHH---HHHHH--CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CS
T ss_pred             CCCHHHHHHHHHH---HHHHh--cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-cc
Confidence            3776654433322   22222  26789999999996 66667777733 479999999999999999999999888 67


Q ss_pred             CCeEEEEccccccccCCCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          185 KRMKFLTCDIMEVKEKLGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       185 ~rI~Fi~GDA~el~~dL~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++.+.++|+.+.  +...||+|++....++  .+++..+|+++++.|+|||.+++.+
T Consensus        92 ~~~~~~~~d~~~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_          92 IPVEILCNDIRHV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             SCEEEECSCTTTC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhccchhhcc--ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            8899999998754  3457898887655543  5789999999999999999999864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.7e-15  Score=148.00  Aligned_cols=160  Identities=16%  Similarity=0.175  Sum_probs=122.0

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC-CcCCCeEEEEccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD-EIEKRMKFLTCDIME  196 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG-~Ls~rI~Fi~GDA~e  196 (535)
                      .....+...+.+.|+++|||+|||+ |..++.||+...|+++|+++|+++++++.|+++++..+ ...+++.|+++|+.+
T Consensus        83 kD~s~Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          83 KDAAQIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            4566666677889999999999997 66668888866789999999999999999999998752 145799999999988


Q ss_pred             cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc---------ccc-ccCCCCcc-c--cCCcEEEE
Q 041205          197 VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG---------ARA-FLYPVVEH-E--LFDFKVLS  263 (535)
Q Consensus       197 l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G---------lR~-fLYP~Vdp-d--l~GFeil~  263 (535)
                      ...+.+.||.||++  +   +++..++.++.+.|||||++++-.+.-         ++. ..|-.+.. +  ...|++..
T Consensus       162 ~~~~~~~fDaV~ld--l---p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l~R~~~v~~  236 (264)
T d1i9ga_         162 SELPDGSVDRAVLD--M---LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVG  236 (264)
T ss_dssp             CCCCTTCEEEEEEE--S---SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCCCCCEEEET
T ss_pred             ccccCCCcceEEEe--c---CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEEEEEEEecc
Confidence            77777789999985  2   578899999999999999999977521         221 11111111 2  26787763


Q ss_pred             -EEcCCCccee---eeEEEecCCC
Q 041205          264 -IFHPTNDVIN---SVVLLQLPKD  283 (535)
Q Consensus       264 -v~hP~~eVIN---SVVvARK~~~  283 (535)
                       ..+|....+.   -+++|||-.|
T Consensus       237 ~~~RP~~~~vgHTgfl~~ark~~~  260 (264)
T d1i9ga_         237 LAVRPQHSMRGHTAFLVATRRLAP  260 (264)
T ss_dssp             TEEEECSCCCCCSCEEEEEEBCCT
T ss_pred             CeeCCCCCCccchHHHhhhhhccC
Confidence             6788876442   2788998653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.61  E-value=4.9e-16  Score=136.14  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=90.2

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc----------CCCeEEEEccc
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI----------EKRMKFLTCDI  194 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L----------s~rI~Fi~GDA  194 (535)
                      ..+.+.+++||||||||+ |.-+++||+   .|.+|+|||+|+.|++.|++.++..+..          ...++|+++|.
T Consensus        14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~---~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHcCCCCCCEEEEecCcC-CHHHHHHHH---cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            334568999999999995 788899998   4899999999999999999998765410          24678999999


Q ss_pred             cccccCC-CCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          195 MEVKEKL-GEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       195 ~el~~dL-~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++.... ..||+|+.....+ + .+++..++++++++|||||.+++..
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            8765433 4699999765543 3 4678999999999999999887755

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=1.3e-14  Score=131.71  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=88.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.||||||||. |..++.||+   .|.+|+|||+|+.+++.|++.++..| + +++++..+|+.+... .+.||+|+.
T Consensus        29 ~~~grvLDiGcG~-G~~~~~la~---~g~~v~gvD~s~~~l~~a~~~~~~~~-~-~~~~~~~~d~~~~~~-~~~fD~I~~  101 (198)
T d2i6ga1          29 VAPGRTLDLGCGN-GRNSLYLAA---NGYDVTAWDKNPASMANLERIKAAEG-L-DNLQTDLVDLNTLTF-DGEYDFILS  101 (198)
T ss_dssp             SCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred             CCCCcEEEECCCC-CHHHHHHHH---HhhhhccccCcHHHHHHHHHHhhhcc-c-cchhhhheecccccc-cccccEEEE
Confidence            4567999999995 888899998   58899999999999999999999988 4 589999999887654 467999997


Q ss_pred             ccccC-C-hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ....+ + .++..++++++.+.|+|||++++...
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            65443 3 46678999999999999999888653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5e-16  Score=146.32  Aligned_cols=121  Identities=10%  Similarity=0.145  Sum_probs=98.0

Q ss_pred             HHHHHHH-HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc
Q 041205          116 AKLEYGA-LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI  194 (535)
Q Consensus       116 irlE~~l-L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA  194 (535)
                      +..|.+. |..++...+|++||||||| .|+|+++||+.+.++++|++||+++++++.|+++++..| ++++|+++.||+
T Consensus        40 i~~~~G~lL~~lv~~~kpk~ILEiGt~-~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~  117 (214)
T d2cl5a1          40 VGDAKGQIMDAVIREYSPSLVLELGAY-CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGAS  117 (214)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEccC-chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeeccc
Confidence            4555443 3334455789999999999 699999999955568999999999999999999999999 889999999999


Q ss_pred             cccccC------CCCcceEEeccccCChhhHHH--HHHHHHhhcccCeEEEEEcc
Q 041205          195 MEVKEK------LGEYDCIILAALAGNEEEKAK--ILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       195 ~el~~d------L~~FDvVfiaALVgm~edK~~--VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .++...      .+.||+||+++..   ..+..  .+.+..++|+|||+|++++.
T Consensus       118 ~e~l~~l~~~~~~~~~D~ifiD~~~---~~~~~~~~l~~~~~lLkpGGvIv~Ddv  169 (214)
T d2cl5a1         118 QDLIPQLKKKYDVDTLDMVFLDHWK---DRYLPDTLLLEKCGLLRKGTVLLADNV  169 (214)
T ss_dssp             HHHGGGHHHHSCCCCEEEEEECSCG---GGHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred             cccccchhhcccccccceeeecccc---cccccHHHHHHHhCccCCCcEEEEeCc
Confidence            876432      3569999999766   33333  46677789999999999884

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=2.1e-15  Score=145.36  Aligned_cols=110  Identities=19%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      .+.+|.+|||||||+ |..++.+|+....+++|+|||+|+++++.|++.+...+ +  +++|+++|+.+++.+ +.||+|
T Consensus        24 ~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-~--~~~f~~~d~~~~~~~-~~fD~v   98 (281)
T d2gh1a1          24 KITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-Y--DSEFLEGDATEIELN-DKYDIA   98 (281)
T ss_dssp             CCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-S--EEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-c--ccccccccccccccc-CCceEE
Confidence            467899999999996 77778888843447899999999999999999999988 3  799999999887654 469999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      +....++..+++..+|++++++|||||.+++.+++
T Consensus        99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            98766655578899999999999999999987764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=1.5e-15  Score=138.55  Aligned_cols=100  Identities=16%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++.+|||||||+ |..+..+++   .|++|+|||+|+++++.|++.    + .   ..++++|+.+++.+.+.||+|+.
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~giD~s~~~l~~a~~~----~-~---~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          41 KNPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREK----G-V---KNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CSCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHH----T-C---SCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-chhcccccc---cceEEEEeecccccccccccc----c-c---cccccccccccccccccccceee
Confidence            5788999999996 777788988   589999999999999999874    3 1   13678999998887788999996


Q ss_pred             cc-ccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AA-LAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aA-LVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .. ..+..+++.++|+++.++|||||++++...
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            43 333357889999999999999999998653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=138.22  Aligned_cols=107  Identities=15%  Similarity=0.263  Sum_probs=87.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++.+|||||||+ |..+..++..  .+.+|+|||+|+++++.|++.+...| . .+++|+++|+.+++...+.||+|+
T Consensus        58 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~l~~ak~~~~~~~-~-~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          58 KTGTSCALDCGAGI-GRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEG-K-RVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             CCCCSEEEEETCTT-THHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGG-G-GEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeccCC-CHhhHHHHHh--cCCEEEEeecCHHHhhcccccccccc-c-cccccccccccccccccccccccc
Confidence            46778999999996 5444554442  34689999999999999999998887 3 578999999999887767899999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...+++  .++...++.++++.|+|||.+++.+
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            8766654  3556789999999999999999865

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.5e-15  Score=140.72  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=90.9

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+...+.+.++++|||||||+ |+.+.+||+...++++|+++|+++++++.|+++++..+ + +++.++++|+.+....
T Consensus        65 a~~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~-~n~~~~~~d~~~~~~~  141 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFVCGDGYYGVPE  141 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGG
T ss_pred             HHHHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-c-cccccccCchHHcccc
Confidence            3344456789999999999996 88888999865678999999999999999999999988 4 7899999999887766


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+.||+||+.+.+...      .+.+.+.|||||+|++
T Consensus       142 ~~~fD~I~~~~~~~~~------p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         142 FSPYDVIFVTVGVDEV------PETWFTQLKEGGRVIV  173 (213)
T ss_dssp             GCCEEEEEECSBBSCC------CHHHHHHEEEEEEEEE
T ss_pred             ccchhhhhhhccHHHh------HHHHHHhcCCCcEEEE
Confidence            6789999998776422      2356778999999987

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.57  E-value=7.3e-15  Score=136.64  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|||||||+ |.-++.||+   .|.+|+|||+|++|++.|++.+...|   .+++|+++|+.++..+ +.||+|++
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~---~g~~v~GvD~S~~ml~~A~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQG---LKPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTT---CCCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH---hCCccEeeccchhhhhhccccccccC---ccceeeccchhhhccc-ccccccce
Confidence            4578999999997 455577878   47899999999999999999998888   3799999999876543 57999985


Q ss_pred             c-ccc-CC--hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          210 A-ALA-GN--EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       210 a-ALV-gm--~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      . ..+ ++  .++..++|++++++|+|||.|++.
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            3 222 22  568889999999999999999964

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.55  E-value=1.4e-14  Score=136.25  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=86.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVf  208 (535)
                      .++++|||||||+++.+ ..+++.  ..++|+|||+|+++++.|++.....+ ...++.|+++|+...+.+. +.||+|+
T Consensus        23 ~~~~~VLDlGCG~G~~~-~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDL-LKYERA--GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             CTTCEEEEETCTTTTTH-HHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCcCEEEEecccCcHHH-HHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchhhhcccccccceEEE
Confidence            67899999999986655 555662  44689999999999999999988887 5678999999997655544 4599999


Q ss_pred             eccccCC----hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          209 LAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       209 iaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                      +....+.    .++...++.++.++|+|||++++..++
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            7644432    244568999999999999999986554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=3.4e-14  Score=138.42  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=98.8

Q ss_pred             ccchhhH-HhHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205          107 PYYENYV-KLAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE  182 (535)
Q Consensus       107 pYy~NYv-~LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~  182 (535)
                      .||++-. .|-+-+   +..+...+.+.++++|||||||.+ ..++.+|++  .|++|+|||+|++.++.|++.+++.| 
T Consensus        24 ~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G-~~a~~~a~~--~g~~v~gi~ls~~q~~~a~~~~~~~~-   99 (280)
T d2fk8a1          24 AYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWG-TTMRRAVER--FDVNVIGLTLSKNQHARCEQVLASID-   99 (280)
T ss_dssp             CCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTS-HHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTSC-
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch-HHHHHHHHh--CceeEEEecchHHHHHHHHHHHHhhc-
Confidence            6776532 222222   344444457899999999999965 456778873  58999999999999999999999999 


Q ss_pred             cCCCeEEEEccccccccCCCCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +..++.+...|..+.   .+.||.|+.-... |+ .+++..+|+.+.+.|||||++++..
T Consensus       100 l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         100 TNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            788999999987653   2579999855443 45 5677999999999999999999864

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=135.44  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV  207 (535)
                      .++++||||||| .|+++..+|++  .+.+|+|||+|+++++.|++.++..+   .++.++.+|+.+...++  +.||.|
T Consensus        52 ~~g~~VLdIGcG-~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFG-MAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeecc-chHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcc---cccccccccccccccccccccccce
Confidence            678999999999 58888999883  45799999999999999999998876   47889999987654433  569999


Q ss_pred             EeccccC-----ChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          208 ILAALAG-----NEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       208 fiaALVg-----m~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +++....     ...+...++++++|+|||||+|++.+..+
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~  166 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS  166 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            9764432     15788999999999999999999866433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=4.1e-14  Score=138.78  Aligned_cols=113  Identities=13%  Similarity=0.197  Sum_probs=94.9

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..+..-+++.++++||||||| .|.+++.+|+.  .|++|+||++|++-++.|++.+++.| +.++++|..+|..+++  
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG-~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCG-WGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCT-TSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHcCCCCCCEEEEecCc-chHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhhhccc--
Confidence            444444578999999999999 57888889884  58999999999999999999999999 7899999999986653  


Q ss_pred             CCCcceEEec-cccCC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILA-ALAGN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfia-ALVgm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                       +.||.|+.- ..-|+ ...+..+++++.++|||||++++.+
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence             579988844 33355 5778999999999999999998854

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.1e-14  Score=133.46  Aligned_cols=134  Identities=16%  Similarity=0.164  Sum_probs=96.9

Q ss_pred             HHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEc
Q 041205          113 VKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTC  192 (535)
Q Consensus       113 v~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~G  192 (535)
                      ..+.+.-...+..... .++.+|||||||+ |..+..+++ ..++++|+|||+|+++++.|++.    .   .+++|+++
T Consensus        67 ~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~-G~~~~~l~~-~~~~~~~~giD~s~~~~~~a~~~----~---~~~~~~~~  136 (268)
T d1p91a_          67 QPLRDAIVAQLRERLD-DKATAVLDIGCGE-GYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKR----Y---PQVTFCVA  136 (268)
T ss_dssp             HHHHHHHHHHHHHHSC-TTCCEEEEETCTT-STTHHHHHH-TCTTSEEEEEESCHHHHHHHHHH----C---TTSEEEEC
T ss_pred             HHHHHHHHHHHHHhcC-CCCCEEEEeCCCC-cHHHHHHHH-HCCCCEEEEecchHhhhhhhhcc----c---ccccceee
Confidence            3334433444444444 6789999999997 555566777 47899999999999999998864    2   36899999


Q ss_pred             cccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc-----cccccccCCCCcc------ccCCcEE
Q 041205          193 DIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA-----KGARAFLYPVVEH------ELFDFKV  261 (535)
Q Consensus       193 DA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa-----~GlR~fLYP~Vdp------dl~GFei  261 (535)
                      |+.+++...+.||+|+.....+       .+++++|+|||||+|++-.+     +.++..+|+....      ...||..
T Consensus       137 d~~~l~~~~~sfD~v~~~~~~~-------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~~f~~  209 (268)
T d1p91a_         137 SSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTL  209 (268)
T ss_dssp             CTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEE
T ss_pred             ehhhccCCCCCEEEEeecCCHH-------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHhhccccccccchhhccCCce
Confidence            9999998888899999643332       15789999999999999764     2234566665432      2367766


Q ss_pred             EE
Q 041205          262 LS  263 (535)
Q Consensus       262 l~  263 (535)
                      ..
T Consensus       210 ~~  211 (268)
T d1p91a_         210 QQ  211 (268)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=6.6e-14  Score=127.49  Aligned_cols=110  Identities=23%  Similarity=0.318  Sum_probs=89.0

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~dL  201 (535)
                      +...+.+.++++|||||||+ |..++.+|+   .+.+|+++|+|+.+++.|+++++..+ +. .+++|+.+|..+. ...
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~---~~~~v~~iD~s~~~i~~a~~n~~~~~-l~~~~i~~~~~d~~~~-~~~  117 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYEN-VKD  117 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTT-CTT
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh---hccccceeeeccccchhHHHHHHHhC-CccceEEEEEcchhhh-hcc
Confidence            44455668899999999996 667788888   35689999999999999999999888 54 4799999998763 344


Q ss_pred             CCcceEEeccccCC-hhhHHHHHHHHHhhcccCeEEEE
Q 041205          202 GEYDCIILAALAGN-EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       202 ~~FDvVfiaALVgm-~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +.||+|+++...+. ...-..+++++.++|+|||.+++
T Consensus       118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            67999998755543 33457899999999999998765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.4e-14  Score=130.68  Aligned_cols=110  Identities=11%  Similarity=0.068  Sum_probs=89.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC---------------CcCCCeEEEE
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD---------------EIEKRMKFLT  191 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG---------------~Ls~rI~Fi~  191 (535)
                      +.+.++.|||++|||. |.-+++||+   .|.+|||||+|+.+++.|++.....+               ..+.+++|.+
T Consensus        41 l~~~~~~rvLd~GCG~-G~~a~~LA~---~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  116 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGK-AVEMKWFAD---RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYC  116 (229)
T ss_dssp             HTTCCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE
T ss_pred             cCCCCCCEEEEeCCCC-cHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEE
Confidence            4457889999999995 888999999   68999999999999999998765321               0135899999


Q ss_pred             ccccccccCC-CCcceEEecccc-CC-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          192 CDIMEVKEKL-GEYDCIILAALA-GN-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       192 GDA~el~~dL-~~FDvVfiaALV-gm-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|..++.... +.||+|+..... ++ .++...++.++.++|||||++++-.
T Consensus       117 ~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         117 CSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             SCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            9998876544 569999976555 44 6889999999999999999766644

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.50  E-value=5.9e-14  Score=132.71  Aligned_cols=112  Identities=18%  Similarity=0.264  Sum_probs=92.3

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +.........++|||||||+ |..++.+++ .+|+.+++++|+ +++++.|++.+...| +.++|+|+.+|..+.  ...
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~-G~~~~~la~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~rv~~~~~D~~~~--~~~  145 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGK-GGFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFEP--LPR  145 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTSC--CSS
T ss_pred             HHhhcCCccCCEEEEeCCCC-CHHHHHHHH-hcceeEEEEccC-HHHHHHHHHHHHHhh-cccchhhccccchhh--ccc
Confidence            33444557789999999996 677778887 478999999998 789999999999999 789999999998652  235


Q ss_pred             CcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +||+|++...++.  .++..++|+++++.|||||+|++.+
T Consensus       146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            6999998766654  4566799999999999999988865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=135.86  Aligned_cols=104  Identities=21%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC---cCCCeEEEEccccccccCCCCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE---IEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~---Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      .+.++++|||||||+ |+.+.+||+...++++|++||+++++++.|++++++.+.   ...++.+++||+.+...+.+.|
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f  151 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY  151 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence            568999999999995 888889988556788999999999999999999988762   1258999999998877777789


Q ss_pred             ceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          205 DCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       205 DvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      |+|++.+.+..      +.+.+.+.|||||++++
T Consensus       152 D~I~~~~~~~~------ip~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         152 DAIHVGAAAPV------VPQALIDQLKPGGRLIL  179 (224)
T ss_dssp             EEEEECSBBSS------CCHHHHHTEEEEEEEEE
T ss_pred             hhhhhhcchhh------cCHHHHhhcCCCcEEEE
Confidence            99999877742      23457789999999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.50  E-value=2.1e-14  Score=139.03  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=91.6

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.+ ...++++..+|+.+...
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~~~~  151 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIADFIS  151 (250)
T ss_dssp             -------CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTTCCC
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeecccc
Confidence            34444556789999999999997 56567788755688999999999999999999999987 56899999999987543


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                       ...||.||++  +   +++..+++++.+.|||||++++..+
T Consensus       152 -~~~fD~V~ld--~---p~p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         152 -DQMYDAVIAD--I---PDPWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             -SCCEEEEEEC--C---SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             -cceeeeeeec--C---CchHHHHHHHHHhcCCCceEEEEeC
Confidence             3579999986  2   4678899999999999999998654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=3.9e-14  Score=137.67  Aligned_cols=115  Identities=16%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             HHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          119 EYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       119 E~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      -...+...+.+.++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.| +.+++.+..+|+.+ .
T Consensus        91 d~~~Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~-~  167 (266)
T d1o54a_          91 DSSFIAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE-G  167 (266)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG-C
T ss_pred             HHHHHHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEeccccc-c
Confidence            345566667889999999999997 56667888855688999999999999999999999999 78899999999754 3


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .+...||.||++  +   +++..+++++.+.|||||+|++-.+
T Consensus       168 ~~~~~~D~V~~d--~---p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         168 FDEKDVDALFLD--V---PDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CSCCSEEEEEEC--C---SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccccceeeeEec--C---CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            444679999985  2   5788999999999999999998654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=1.1e-13  Score=135.94  Aligned_cols=127  Identities=12%  Similarity=0.103  Sum_probs=98.8

Q ss_pred             ccchhhH-HhHHHH---HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC
Q 041205          107 PYYENYV-KLAKLE---YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE  182 (535)
Q Consensus       107 pYy~NYv-~LirlE---~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~  182 (535)
                      .||++-. .|-+-+   ...+...+++.++++||||||| .|..++.+|++  .|++|+||++|++.++.|++.++..| 
T Consensus        33 ~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG-~G~~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~-  108 (291)
T d1kpia_          33 AYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCG-WGSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVD-  108 (291)
T ss_dssp             CCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCT-TSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCc-chHHHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhc-
Confidence            6776322 233222   4444555678999999999999 56677888874  47999999999999999999999999 


Q ss_pred             cCCCeEEEEccccccccCCCCcceEEecccc-CCh--------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          183 IEKRMKFLTCDIMEVKEKLGEYDCIILAALA-GNE--------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       183 Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV-gm~--------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+++++..+|..   +..+.||.|+.-... |+.        +.+..+|+.+.++|||||++++..
T Consensus       109 l~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         109 SPRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CSSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             cchhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            7899999999863   344679999854333 441        457999999999999999999854

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.48  E-value=7.9e-14  Score=130.54  Aligned_cols=106  Identities=13%  Similarity=0.131  Sum_probs=85.4

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC---
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE---  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~---  203 (535)
                      +.+.|+++|||||||+ |+++..+|+ +.++++|+|||+++.+++.|++.+++.+    ++.++.+|+.+.......   
T Consensus        52 l~lkpg~~VLDlGcG~-G~~~~~la~-~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS-GTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHH-HTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCCCCCEEEEeCCcC-CHHHHHHHH-hccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCccccccccce
Confidence            4678999999999997 678888888 5677899999999999999999998865    799999999875443333   


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+||.+  +....+...++.++.+.|||||.+++-.
T Consensus       126 vd~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQD--IAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEec--ccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            4555543  2223678899999999999999988753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.47  E-value=1.5e-13  Score=130.93  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=88.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK  200 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d  200 (535)
                      ..|...+...++.+|||||||++.+|.-++.+ +  ..+|++||+++++++.||+.+...+    +++|+++|+.++...
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~-~--~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~d~~~~~~~  155 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTK-L--YATTDLLEPVKHMLEEAKRELAGMP----VGKFILASMETATLP  155 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHH-H--CSEEEEEESCHHHHHHHHHHTTTSS----EEEEEESCGGGCCCC
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhh-c--CceEEEEcCCHHHHHhhhccccccc----cceeEEccccccccC
Confidence            34444444467899999999975555444434 2  3589999999999999998876543    589999999988777


Q ss_pred             CCCcceEEeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.||+||+....++  .++..++|.++++.|+|||.|++..
T Consensus       156 ~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            678999998765544  4556799999999999999999975

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=9.3e-14  Score=125.44  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+..+|||||||+ |..+..++       +++|||+|+++++.|++.         +++|+++|+.+++...+.||+|++
T Consensus        35 ~~~~~vLDiGcG~-G~~~~~~~-------~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          35 LPEGRGVEIGVGT-GRFAVPLK-------IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             CCSSCEEEETCTT-STTHHHHT-------CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCC-cccccccc-------eEEEEeCChhhccccccc---------cccccccccccccccccccccccc
Confidence            4567999999997 44444442       368999999999999862         479999999998887788999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ...++..+++..++++++++|+|||.+++...
T Consensus        98 ~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          98 VTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             ESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccchhhhhhcCCCCceEEEEec
Confidence            76665567899999999999999999988764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=1.9e-13  Score=132.08  Aligned_cols=113  Identities=21%  Similarity=0.279  Sum_probs=89.6

Q ss_pred             HhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205          114 KLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD  193 (535)
Q Consensus       114 ~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD  193 (535)
                      +.+++=+..+...  ..++++|||||||+ |.-++.+++   .|++|+|||+|+.|++.|+++++..| +  +++|+++|
T Consensus       105 ~TT~l~l~~l~~~--~~~g~~VLDiGcGs-G~l~i~aa~---~g~~V~gvDis~~av~~A~~na~~n~-~--~~~~~~~d  175 (254)
T d2nxca1         105 ETTRLALKALARH--LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNG-V--RPRFLEGS  175 (254)
T ss_dssp             HHHHHHHHHHHHH--CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTT-C--CCEEEESC
T ss_pred             chhhHHHHHHHhh--cCccCEEEEcccch-hHHHHHHHh---cCCEEEEEECChHHHHHHHHHHHHcC-C--ceeEEecc
Confidence            3344444444443  36899999999996 667788877   57899999999999999999999988 5  56899999


Q ss_pred             ccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          194 IMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       194 A~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.+. .+.+.||+|+.....   .....++.++.++|||||+|++.
T Consensus       176 ~~~~-~~~~~fD~V~ani~~---~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         176 LEAA-LPFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHH-GGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccc-ccccccchhhhcccc---ccHHHHHHHHHHhcCCCcEEEEE
Confidence            8764 334679999875333   56788999999999999999984

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.45  E-value=1.4e-13  Score=127.31  Aligned_cols=101  Identities=16%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++|||||||+ |..+..+++   .|.+|+|||+|+++++.|++..   +   ++++|+++|+.+... .+.||+|++
T Consensus        19 ~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~giD~s~~~i~~a~~~~---~---~~~~~~~~~~~~~~~-~~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGRL---K---DGITYIHSRFEDAQL-PRRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHHS---C---SCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCcEEEEeCCC-cHHHHHHHH---cCCeEEEEeCcHHHhhhhhccc---c---ccccccccccccccc-ccccccccc
Confidence            4578999999997 555567777   4789999999999999998753   2   469999999887654 367999998


Q ss_pred             ccccCChhhHHHHHHHHH-hhcccCeEEEEEcc
Q 041205          210 AALAGNEEEKAKILGHIR-KYMKEGGVLLVRSA  241 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~-rvLKPGGvLVvRsa  241 (535)
                      ...+++.++...++.++. ++|+|||.+++..+
T Consensus        88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          88 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cceeEecCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            766655688999999998 78999999998653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=2.8e-13  Score=128.79  Aligned_cols=146  Identities=11%  Similarity=0.082  Sum_probs=104.3

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FD  205 (535)
                      +++.++++|||||||+ |+|+..+|+ +.+++.|+|||+++.+++.+++++.+.+    ++.++.+|+....... ..||
T Consensus        70 l~ikpG~~VLDlGcGs-G~~~~~la~-~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          70 MPIKRDSKILYLGASA-GTTPSHVAD-IADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCTTCEEEEESCCS-SHHHHHHHH-HTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCCCEEEEeCEEc-CHHHHHHHH-hCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEeeccCcccccccce
Confidence            4679999999999995 899999998 5788999999999999999999877654    6888999987654322 3467


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc-ccccccccCCCCcc-------ccCCcEEEEEEc--CCCcceeee
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS-AKGARAFLYPVVEH-------ELFDFKVLSIFH--PTNDVINSV  275 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs-a~GlR~fLYP~Vdp-------dl~GFeil~v~h--P~~eVINSV  275 (535)
                      ++++...++..++...++.++.+.|||||.+++-. +.......-|....       .-.||++....+  |...- ..+
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py~~~-H~~  222 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKD-HVM  222 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTTSTT-EEE
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCCcCC-eEE
Confidence            76665555556889999999999999999887753 22211111111111       127999987554  65432 334


Q ss_pred             EEEe
Q 041205          276 VLLQ  279 (535)
Q Consensus       276 VvAR  279 (535)
                      ++++
T Consensus       223 vvg~  226 (230)
T d1g8sa_         223 FVGI  226 (230)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=137.48  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC---------CcCCCeE
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD---------EIEKRMK  188 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG---------~Ls~rI~  188 (535)
                      .....+...+.+.++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.+         .+.++++
T Consensus        85 kD~~~Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          85 KDINMILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             ccHHHHHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            4456666677889999999999996 66778888866789999999999999999999988642         1457999


Q ss_pred             EEEccccccccCC--CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          189 FLTCDIMEVKEKL--GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       189 Fi~GDA~el~~dL--~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++|+.+....+  ..||.||++  +   +++..++.++.+.|||||+|++-.+
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~LD--~---p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVALD--M---LNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             EEESCTTCCC-------EEEEEEC--S---SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             EEecchhhcccccCCCCcceEeec--C---cCHHHHHHHHHHhccCCCEEEEEeC
Confidence            9999997765543  459999985  2   4567899999999999999998664

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=9e-13  Score=125.38  Aligned_cols=147  Identities=14%  Similarity=0.145  Sum_probs=105.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc---CCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE---KLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~---dL~~  203 (535)
                      +++.++++|||+|||+ |.++..+|+..-++++|+|+|+++.+++.++++++..+    ++..+.+|+.....   ....
T Consensus        69 l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECCTTCGGGGTTTCCC
T ss_pred             cccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEECCCcccccccccc
Confidence            3578999999999996 78888999855688999999999999999999988766    57888888864322   2345


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc-cccccccCCC-----Ccc-ccCCcEEEEEE--cCCCcceee
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA-KGARAFLYPV-----VEH-ELFDFKVLSIF--HPTNDVINS  274 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa-~GlR~fLYP~-----Vdp-dl~GFeil~v~--hP~~eVINS  274 (535)
                      +|+||.+...  .++...++.++.+.|||||++++-.. .......-|.     +.. ...||++....  +|.+.- ..
T Consensus       144 vD~i~~d~~~--~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~-H~  220 (227)
T d1g8aa_         144 VDVIFEDVAQ--PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEKD-HA  220 (227)
T ss_dssp             EEEEEECCCS--TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTSSS-EE
T ss_pred             eEEEEEEccc--cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCCCCCCc-eE
Confidence            8888876333  26788899999999999998887431 1111111111     111 12699988754  476532 45


Q ss_pred             eEEEecC
Q 041205          275 VVLLQLP  281 (535)
Q Consensus       275 VVvARK~  281 (535)
                      ++++||.
T Consensus       221 ~vv~rK~  227 (227)
T d1g8aa_         221 LFVVRKT  227 (227)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8899984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=1.1e-12  Score=122.64  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--cCCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--EKLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--~dL~~FDvVf  208 (535)
                      +.-.|||||||. |..++.+|+ ..|+..|+|||+++.++..|.+.+++.| + +++.|+++|+.++.  .+.+.+|.|+
T Consensus        29 ~~PlvLeIGcG~-G~~~~~lA~-~~p~~~~iGiD~~~~~i~~a~~~~~~~~-l-~Nv~~~~~Da~~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          29 DNPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRVY  104 (204)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCceEEEEEecC-cHHHHHHHH-hCCCCcEEEeecchHHHHHHHHHHHHHh-c-cCchhcccchhhhhcccCchhhhccc
Confidence            445899999995 777788888 4899999999999999999999999999 5 68999999998765  3446799999


Q ss_pred             eccccCChhhH--------HHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEK--------AKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK--------~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.....+...+        ..+++.++++|||||.|.+.+-
T Consensus       105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD  145 (204)
T d2fcaa1         105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  145 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             cccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            87655441111        4799999999999999998763

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.39  E-value=5.6e-13  Score=126.11  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ...+...+.+.++++||+||||+ ||.+.+||+  +-|++|++||++++.++.|++++++.| + +++.|++||+.+...
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGs-GY~taila~--l~g~~V~~ie~~~~l~~~a~~~l~~~g-~-~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGS-GWNAALISE--IVKTDVYTIERIPELVEFAKRNLERAG-V-KNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTT-SHHHHHHHH--HHCSCEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCG
T ss_pred             HHHHHHhhccCccceEEEecCCC-ChhHHHHHH--hhCceeEEEeccHHHHHHHHHHHHHcC-C-ceeEEEECccccCCc
Confidence            34445556789999999999995 888889988  346889999999999999999999999 4 799999999987666


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ..+.||.|++.+.+..  .+..    +.+.|+|||++++
T Consensus       142 ~~~pfD~Iiv~~a~~~--ip~~----l~~qL~~gGrLv~  174 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPK--IPEP----LIEQLKIGGKLII  174 (215)
T ss_dssp             GGCCEEEEEECSBBSS--CCHH----HHHTEEEEEEEEE
T ss_pred             ccCcceeEEeeccccc--CCHH----HHHhcCCCCEEEE
Confidence            6678999999877742  2223    5567999999987

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.38  E-value=1.4e-12  Score=124.28  Aligned_cols=107  Identities=20%  Similarity=0.220  Sum_probs=89.2

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      ...+..+|||||||+ |..++.+++ .+|+.+++++|+ |++++.|++.++..| +.++++|+.+|..+ + ...+||+|
T Consensus        78 d~~~~~~vlDvG~G~-G~~~~~l~~-~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-~~~ri~~~~~d~~~-~-~p~~~D~v  151 (256)
T d1qzza2          78 DWSAVRHVLDVGGGN-GGMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-P-LPVTADVV  151 (256)
T ss_dssp             CCTTCCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-C-CSCCEEEE
T ss_pred             CCccCCEEEEECCCC-CHHHHHHHH-hhcCcEEEEecC-hHHHHHHHHHHhhcC-Ccceeeeeeeeccc-c-ccccchhh
Confidence            346778999999996 666777777 478999999998 889999999999999 78999999999864 2 22469999


Q ss_pred             EeccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++...+|.  .++...+|+++++.|||||+|++.+
T Consensus       152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            98866654  5667889999999999999888765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.37  E-value=5.2e-13  Score=127.07  Aligned_cols=104  Identities=21%  Similarity=0.314  Sum_probs=83.3

Q ss_pred             HHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC
Q 041205          122 ALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      .+...+.+.++++|||||||+ |+.+.+||+   .+++|++||+++++++.|++++...    .++.|+++|+.....+.
T Consensus        61 ~ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~---l~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~  132 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGI-GYYTALIAE---IVDKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEE  132 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGG
T ss_pred             HHHHHhhhcccceEEEecCCC-CHHHHHHHH---HhcccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhh
Confidence            344556789999999999996 777778888   3589999999999999999987653    48999999987655555


Q ss_pred             CCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          202 GEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       202 ~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.||+|++.+.+..      +.+.+.+.|+|||+|++-
T Consensus       133 ~pfD~Iiv~~a~~~------ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         133 KPYDRVVVWATAPT------LLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CCEEEEEESSBBSS------CCHHHHHTEEEEEEEEEE
T ss_pred             hhHHHHHhhcchhh------hhHHHHHhcCCCCEEEEE
Confidence            67999999877632      234566789999999883

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.6e-13  Score=122.66  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCe---------------------
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRM---------------------  187 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI---------------------  187 (535)
                      ..++++|||||||++.++. .+|..  .+.+|+|+|+|+.+++.|++.++..+ .....                     
T Consensus        49 ~~~g~~vLDlGcG~G~~~~-~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQV-LAACD--SFQDITLSDFTDRNREELEKWLKKEP-GAYDWTPAVKFACELEGNSGRWEEKE  124 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGG-TTGGG--TEEEEEEEESCHHHHHHHHHHHHTCT-TCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHH-HHhcc--ccCcEEEecCCHHHHHHHHHHHhhcc-ccchhhhHHHHHHHhccccchHHHHH
Confidence            3578999999999876764 44541  34579999999999999999988765 21100                     


Q ss_pred             --------EEEEc----cccccccCCCCcceEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          188 --------KFLTC----DIMEVKEKLGEYDCIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       188 --------~Fi~G----DA~el~~dL~~FDvVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                              .....    +....+...+.||+|+....++.    .++...+++++.++|||||.+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                    01111    11112334467999997544432    35788999999999999999999774

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=3.6e-12  Score=124.96  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=86.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ..++++|||||||+ |.-++++|++  ...+|+++|.++ ++..|++.++..| +.++|+++++|+.++..+...||+|+
T Consensus        36 ~~~~~~VLDlGcGt-G~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~-~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT-GILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             cCCcCEEEEeCCCC-CHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhC-ccccceEEEeehhhccCcccceeEEE
Confidence            35789999999996 5666888882  335899999996 6789999999999 78999999999998877767899998


Q ss_pred             eccccCC---hhhHHHHHHHHHhhcccCeEEEE
Q 041205          209 LAALAGN---EEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       209 iaALVgm---~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ..-....   ......++..+.+.|||||+++-
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence            7533321   45678899999999999999864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=7.9e-13  Score=126.64  Aligned_cols=113  Identities=17%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC---CCeEEEEcccccccc
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE---KRMKFLTCDIMEVKE  199 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls---~rI~Fi~GDA~el~~  199 (535)
                      +...++..++++|||||||+ |..++.||+   .|.+|+|||+|++|++.|++.....+ ..   .+..+..+|...+..
T Consensus        48 l~~~l~~~~~~~vLD~GcG~-G~~~~~la~---~g~~v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          48 LLGLLRQHGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHTTCCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHhhhcCCCEEEEecCCC-cHHHHHHHH---cCCeeeeccCchHHHHHHHHHHHhcc-cccccceeeeeecccccccc
Confidence            33334436678999999996 677788888   57899999999999999999987765 21   234455555433221


Q ss_pred             ---CCCCcceEEecc--ccCC------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 ---KLGEYDCIILAA--LAGN------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 ---dL~~FDvVfiaA--LVgm------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         ....||+|++..  +-++      .++...+|++++++|||||+|++..
T Consensus       123 ~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         123 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence               224699998643  2222      2567889999999999999999854

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.3e-12  Score=125.47  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=90.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcCCCeEEEEc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIEKRMKFLTC  192 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls~rI~Fi~G  192 (535)
                      ...+...+.+.++++|||||||. |..++.+|+ ..+..+++|||+++++++.|++..+..       |.-..+|+|++|
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~-~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAA-ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTT-SHHHHHHHH-HCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCC-CHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            44445556789999999999995 677778877 355568999999999999999876653       311257999999


Q ss_pred             cccccccCCC--CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          193 DIMEVKEKLG--EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       193 DA~el~~dL~--~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      |+.+.+....  ++|+||+.+... .++....|.++.+.|||||+|++-
T Consensus       218 d~~~~~~~~~~~~advi~~~~~~f-~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEECCTTT-CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccccccCcceEEEEcceec-chHHHHHHHHHHHhCCCCcEEEEe
Confidence            9987655332  358888765543 378889999999999999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.4e-12  Score=118.42  Aligned_cols=109  Identities=18%  Similarity=0.186  Sum_probs=77.8

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC----------------------
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR----------------------  186 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r----------------------  186 (535)
                      ...+++||||||||+-++.+.+++   ...+|+|+|+++.+++.+++.+++.+. .-.                      
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~  127 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPG-AFNWSMYSQHACLIEGKGECWQDKE  127 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTT-CCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcc-cccchhhhhhhhhhccccchhhhhH
Confidence            367899999999997676655545   346899999999999999998776541 110                      


Q ss_pred             -------eEEEEcccccc------ccCCCCcceEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          187 -------MKFLTCDIMEV------KEKLGEYDCIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       187 -------I~Fi~GDA~el------~~dL~~FDvVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                             -.+...|+..-      ....+.||+|+.....+.    .++..+++++++++|||||+|++.+.
T Consensus       128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence                   12334454321      112246999997654432    35789999999999999999999774

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-11  Score=119.57  Aligned_cols=113  Identities=22%  Similarity=0.253  Sum_probs=87.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      .++.+.....++++|||||||+ |+-++++|+   .| .+|+++|.++.+. .|++.+++.| +.++|+++++|+.++..
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~-G~lsl~aa~---~Ga~~V~aid~s~~~~-~a~~~~~~~~-~~~~i~~~~~~~~~l~~   98 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGT-GILSMFAAK---AGAKKVLGVDQSEILY-QAMDIIRLNK-LEDTITLIKGKIEEVHL   98 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEESSTHHH-HHHHHHHHTT-CTTTEEEEESCTTTSCC
T ss_pred             HHHHhccccCCcCEEEEECCCC-CHHHHHHHH---cCCCEEEEEeCHHHHH-HHHHHHHHhC-CCccceEEEeeHHHhcC
Confidence            3444444556899999999995 677788888   34 5899999999876 5677777778 67999999999999877


Q ss_pred             CCCCcceEEeccccCC---hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 KLGEYDCIILAALAGN---EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 dL~~FDvVfiaALVgm---~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +...||+|+.....+.   ......++....+.|+|||+++-.
T Consensus        99 ~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1          99 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            7778999997533322   234567777778899999999753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=5.6e-12  Score=123.15  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=85.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCC-cEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKS-THFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~G-a~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++++|||||||+ |+-++++|+   .| .+|+|||.++. ...|+++++..| +.++|+|+++|+.++..+...||+|+
T Consensus        32 ~~~~~VLDiGcG~-G~ls~~aa~---~Ga~~V~avd~s~~-~~~a~~~~~~n~-~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          32 FKDKVVLDVGSGT-GILCMFAAK---AGARKVIGIECSSI-SDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECSTT-HHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCcCEEEEEecCC-cHHHHHHHH---hCCCEEEEEcCcHH-HhhhhhHHHHhC-CccccceEeccHHHcccccceeEEEe
Confidence            4789999999996 677788888   34 57999999976 578888888888 78999999999998877777899998


Q ss_pred             eccccCC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN---EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm---~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .....+.   ......++..+.+.|+|||+++-..
T Consensus       106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            7533322   3457889999999999999987533

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=3.5e-12  Score=120.84  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhc-----CCCcEEEEEeCChhHHHHHHHHHhhcCCc----CCCeEEEEccccccc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQH-----MKSTHFDNIDIDETANNLARRIVSSDDEI----EKRMKFLTCDIMEVK  198 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~-----l~Ga~VtGIDIDpeAIelAR~li~~lG~L----s~rI~Fi~GDA~el~  198 (535)
                      .+.++++||+|||| .||.+.+||+..     .++.+|++||++++.++.|++++...+ +    -.++.|+++|+.+..
T Consensus        77 ~l~~g~~VLeIGtG-sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~-~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSG-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCT-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecCC-CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcc-hhhcCccEEEEEeccccccc
Confidence            46899999999999 588888888732     235699999999999999999876543 1    158999999998766


Q ss_pred             cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          199 EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .+.+.||.|++.+.+...+      +.+.+.|+|||++++
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV  188 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred             ccccceeeEEEEeechhch------HHHHHhcCCCcEEEE
Confidence            6667899999987774222      346779999999987

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.25  E-value=2e-11  Score=114.03  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=86.8

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCcceEE
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEYDCII  208 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~FDvVf  208 (535)
                      ....|||||||. |-.++.+|+ ..|+..|+|||+++.++..|.+.+.+.| + .+|.|+.+|+.++..  +...+|.|+
T Consensus        31 ~~plvLdIGcG~-G~~~~~lA~-~~p~~~~iGid~~~~~v~~a~~~~~~~~-l-~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          31 DNPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             CCCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCeEEEEeccC-CHHHHHHHH-HCCCCceEEEeccHHHHHHHHHhhhhhc-c-ccceeeecCHHHHhhhccCCceehhc
Confidence            345899999995 777788888 4789999999999999999999999999 5 689999999988763  335699998


Q ss_pred             eccccCChhh--------HHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEE--------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~ed--------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.....+...        -..+|+.+.++|+|||.|.+.+
T Consensus       107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            7644433111        1689999999999999998876

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=115.84  Aligned_cols=129  Identities=10%  Similarity=0.100  Sum_probs=87.0

Q ss_pred             hhhHHhHHHHHHHH-HHhhCCCCCCEEEEEccCCChhhHHHHHhhc---CC--CcEEEEEeCChhHHHHHHHHHhhcCCc
Q 041205          110 ENYVKLAKLEYGAL-IENTGVAQLKKVAFVGSGPMPLTSIILASQH---MK--STHFDNIDIDETANNLARRIVSSDDEI  183 (535)
Q Consensus       110 ~NYv~LirlE~~lL-~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~---l~--Ga~VtGIDIDpeAIelAR~li~~lG~L  183 (535)
                      +.+...++.++..+ .++...++..+|||||||++.+|.. +++..   ++  +..++|||+++.+++.|++.+..... 
T Consensus        18 ~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~-ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-   95 (280)
T d1jqea_          18 QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQ-ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-   95 (280)
T ss_dssp             HHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHH-HHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHH-HHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-
Confidence            44444555554333 2333335556899999998655544 43321   23  45789999999999999999877542 


Q ss_pred             CCCeE--EEEcccccc------ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          184 EKRMK--FLTCDIMEV------KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       184 s~rI~--Fi~GDA~el------~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -..+.  +...++.+.      ..+.+.||+|++....+..++...++.++++.|+|||.+++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_          96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            24444  455554332      2344679999987665545788999999999999999887754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=1.5e-11  Score=121.55  Aligned_cols=107  Identities=22%  Similarity=0.161  Sum_probs=86.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FD  205 (535)
                      .++++|||+|||++++| +.+|.+  ...+|+++|+|+++++.|+++++..| +.++++|+++|+.+...    ....||
T Consensus       144 ~~g~~VLDl~~g~G~~s-i~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFA-IHAAIA--GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchh-hhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhhhhHHHHhccCCCC
Confidence            67999999999975555 666662  33589999999999999999999999 78899999999986543    235699


Q ss_pred             eEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++.-.-.         ...+.+++..+.++|+|||+|++-+
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999754311         2356778999999999999998865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=1.3e-11  Score=121.91  Aligned_cols=105  Identities=18%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FD  205 (535)
                      .++++|||+|||++++| +.+|.   .+++|+++|+|+.+++.|+++++..| + ++++|+++|+.++..    ....||
T Consensus       144 ~~g~rVLDl~~gtG~~s-~~~a~---g~~~V~~vD~s~~al~~a~~n~~~ng-l-~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFA-LHLAL---GFREVVAVDSSAEALRRAEENARLNG-L-GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHH-HHHHH---HEEEEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHH-HHHHh---cCCcEEeecchHHHHHHHHHHHHHcC-C-CCcceeeccHHHHhhhhHhhhcCCC
Confidence            57899999999987776 67776   57899999999999999999999999 6 689999999987543    334699


Q ss_pred             eEEecccc---C------ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALA---G------NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALV---g------m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++.-.   +      ....+.+++..+.++|+|||+|++-+
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99987432   1      03456788999999999999998865

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=2.7e-11  Score=116.88  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          118 LEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       118 lE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .|...+...  +.++++|||+|||.++ -++.+|++  .+++|+++|+||.+++.++++++..| ++++|+++++|+.++
T Consensus        96 ~er~ri~~~--~~~g~~VlD~~aG~G~-~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~-l~~~v~~~~~D~~~~  169 (260)
T d2frna1          96 KERVRMAKV--AKPDELVVDMFAGIGH-LSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDF  169 (260)
T ss_dssp             HHHHHHHHH--CCTTCEEEETTCTTTT-THHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTC
T ss_pred             HHHHHHHhh--cCCccEEEECcceEcH-HHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhC-CCceEEEEEcchHHh
Confidence            444444443  3689999999999654 45777773  55799999999999999999999999 889999999999887


Q ss_pred             ccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          198 KEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       198 ~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ... +.||.|++.-..    ....++....+.++|||.|.+.
T Consensus       170 ~~~-~~~D~Ii~~~p~----~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         170 PGE-NIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CCC-SCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ccC-CCCCEEEECCCC----chHHHHHHHHhhcCCCCEEEEE
Confidence            543 569999985332    3457888899999999998664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.14  E-value=7.6e-11  Score=104.14  Aligned_cols=106  Identities=13%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-CCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-KLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-dL~~FDvVf  208 (535)
                      -.+++|||+|||++.++ +-.+.+  ...+|++||+|+++++.++++++..| +.++++++++|+.+... ..+.||+||
T Consensus        13 ~~g~~vlDl~~GtG~~~-iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLA-IEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHH-HHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHH-HHHHHh--Ccceeeeehhchhhhhhhhhhhhhcc-cccchhhhcccccccccccccccceeE
Confidence            46899999999986555 444442  22599999999999999999999999 78899999999987543 345699999


Q ss_pred             eccccCChhhHHHHHHHHH--hhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIR--KYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~--rvLKPGGvLVvRs  240 (535)
                      ++--.. ......+++.+.  +.|+|||++++..
T Consensus        89 ~DPPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          89 LDPPYA-KETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             ECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             echhhc-cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            984321 245567777775  4699999999854

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.5e-10  Score=118.82  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=93.7

Q ss_pred             ccccCccch--hhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205          102 DLNRFPYYE--NYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS  179 (535)
Q Consensus       102 ~L~~FpYy~--NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~  179 (535)
                      .|++|+-|.  -|..+.-.=...+...+.++++++|+|||||. |-.++.+|.. .+.++|+|||+++.+++.|++.++.
T Consensus       185 ~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~-~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         185 KLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             GGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            355554443  35555544455555567789999999999995 7777888873 4456899999999999999998875


Q ss_pred             cCC------c-CCCeEE-EEccccccc---cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          180 DDE------I-EKRMKF-LTCDIMEVK---EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       180 lG~------L-s~rI~F-i~GDA~el~---~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .+.      . ...+.+ ..++..+..   ..+..+|+||+.+... .++....|.++.+.|||||+|++-.
T Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f-~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         263 LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             HhhhhhhhccccccceeeeeechhhccccccccccceEEEEecccC-chHHHHHHHHHHHhcCCCcEEEEec
Confidence            320      1 112333 233332211   1234589999876543 3888999999999999999998844

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2e-10  Score=112.13  Aligned_cols=106  Identities=23%  Similarity=0.290  Sum_probs=84.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..+.+|||+|||++.+ ++.+|. ..|+++|+++|+|++|++.|++++++.| + ++|+|+++|..+.. ....||+|+.
T Consensus       107 ~~~~~vlDlGtGSG~I-~i~la~-~~p~~~v~avDis~~Al~~A~~Na~~~~-~-~~v~~~~~d~~~~~-~~~~fDlIvs  181 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAI-ALALAS-ERPDCEIIAVDRMPDAVSLAQRNAQHLA-I-KNIHILQSDWFSAL-AGQQFAMIVS  181 (274)
T ss_dssp             SSCCEEEEETCTTSHH-HHHHHH-HCTTSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCSTTGGG-TTCCEEEEEE
T ss_pred             ccccceeeeehhhhHH-HHHHHh-hCCcceeeeccchhHHHhHHHHHHHHhC-c-ccceeeeccccccc-CCCceeEEEe
Confidence            5678999999997544 566666 4789999999999999999999999999 5 67999999987633 2347999987


Q ss_pred             c----------------------cccCC---hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 A----------------------ALAGN---EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 a----------------------ALVgm---~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .                      |+.+-   .....+++.+..++|+|||.+++--
T Consensus       182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4                      11110   1446789999999999999999853

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=2.6e-10  Score=105.72  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-----CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-----KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-----dL  201 (535)
                      +...++..|+|++||++|.|..++..  +|+++|+|+|+|++|++.|++.++..+   +++.|++++..++..     ..
T Consensus        19 l~~~~~~~~lD~t~G~Gghs~~il~~--~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~~~~~~~~   93 (192)
T d1m6ya2          19 LKPEDEKIILDCTVGEGGHSRAILEH--CPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGI   93 (192)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHH--CTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTC
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHhc--CCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHHHHHHcCC
Confidence            34588999999999999999888755  589999999999999999999998866   689999998766432     23


Q ss_pred             CCcceEEeccccC---------ChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          202 GEYDCIILAALAG---------NEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       202 ~~FDvVfiaALVg---------m~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +.||.|++|..+.         -.....+.|....+.|+|||.+++-+.|.
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            5799999986551         13566788999999999999999887664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.07  E-value=2.8e-10  Score=112.66  Aligned_cols=107  Identities=14%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEcccccccc----CCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKE----KLG  202 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~----dL~  202 (535)
                      +.++++||+++||++|+| +.+|.   .|+ +|++||+|+.+++.|+++++..| ++ ++++|+++|+.+...    .-.
T Consensus       142 ~~~g~~VLdlf~~~G~~s-l~aa~---~ga~~V~~vD~s~~a~~~a~~N~~~n~-l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFS-VAAAM---GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHH-HHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCceeecCCCCcHHH-HHHHh---CCCceEEEecCCHHHHHHHHHHHHHhc-ccCcceEEEEccHHHHHHHHHhhcC
Confidence            457899999999987776 55555   455 79999999999999999999888 54 689999999987643    224


Q ss_pred             CcceEEecccc------C---ChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALA------G---NEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALV------g---m~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+|++|--.      +   ...++.+++..+.++|+|||+|++-+
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            69999997331      1   14578899999999999999999855

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=3.3e-10  Score=110.10  Aligned_cols=109  Identities=16%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC--------CcCCCeEEEEccccccccCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD--------EIEKRMKFLTCDIMEVKEKL  201 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG--------~Ls~rI~Fi~GDA~el~~dL  201 (535)
                      ..+++||.||.| .|.++..+.+ + +..+|+.||+|+++++.|++.+....        .-..|++++.+|+.+.....
T Consensus        71 ~~p~~vLiiG~G-~G~~~~~~l~-~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          71 PKPKRVLVIGGG-DGGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SCCCEEEEEECT-TSHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCceEEEecCC-chHHHHHHHH-h-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            688999999999 4677766666 3 55799999999999999999874321        02479999999998877666


Q ss_pred             CCcceEEeccccCC-hhh---HHHHHHHHHhhcccCeEEEEEcc
Q 041205          202 GEYDCIILAALAGN-EEE---KAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       202 ~~FDvVfiaALVgm-~ed---K~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +.||+|+++..-+. .+.   -.++++.+.++|+|||++++...
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            77999999876543 222   26899999999999999998653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=7.1e-10  Score=109.70  Aligned_cols=109  Identities=20%  Similarity=0.267  Sum_probs=85.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CC-cCCCeEEEEccccccccCC-CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DE-IEKRMKFLTCDIMEVKEKL-GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~-Ls~rI~Fi~GDA~el~~dL-~~FD  205 (535)
                      ..+++||.||.| .|.++..+.+ +.+..+|++||+|++.++.|++.+...  |. -+.|++++.+|+.+..... ..||
T Consensus        76 ~~pk~VLiiG~G-~G~~~~~ll~-~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGG-EGATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SCCCEEEEEECT-TSHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCcceEEEeCCC-chHHHHHHHh-cCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            678999999999 5777777766 567889999999999999999987542  21 1368999999999876544 4599


Q ss_pred             eEEeccc--cCC-hh----hHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAAL--AGN-EE----EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaAL--Vgm-~e----dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+++..  .+. .+    --.++++.+.+.|+|||++++..
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9998863  121 11    12679999999999999999865

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=5.4e-10  Score=100.82  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc--cccCCCCcce
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME--VKEKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e--l~~dL~~FDv  206 (535)
                      +..+.+|||+|||++.+ ++..+.   .|++|++||+|+++++.++++++..| +.+++.+..+|...  .......||+
T Consensus        39 ~~~g~~vLDl~~G~G~~-~i~a~~---~ga~vv~vD~~~~a~~~~~~N~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAV-GLEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-LGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHH-HHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeccccchh-hhhhhh---ccchhhhcccCHHHHhhhhHHHHhhc-cccceeeeehhcccccccccCCccce
Confidence            46789999999997554 455555   57899999999999999999999999 67766665655431  1123346999


Q ss_pred             EEeccccCChhhHHHHHHHHH--hhcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIR--KYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~--rvLKPGGvLVvRsa  241 (535)
                      ||++--.+.  +....+..+.  ..|+|||++++...
T Consensus       114 If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         114 AFMAPPYAM--DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eEEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            999854332  2233344443  47999999998653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=1.2e-09  Score=108.59  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=82.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCC-CeEEEEccccccccC----CCC
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEK-RMKFLTCDIMEVKEK----LGE  203 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~-rI~Fi~GDA~el~~d----L~~  203 (535)
                      ..++.|||+++||+++ .++.+|.   .|++|++||.|+.+++.|+++++..| +.. +++|+++|+.+....    -..
T Consensus       130 ~~~~~rVLdlf~~tG~-~sl~aa~---~GA~V~~VD~s~~al~~a~~N~~ln~-~~~~~~~~i~~D~~~~l~~~~~~~~~  204 (309)
T d2igta1         130 ADRPLKVLNLFGYTGV-ASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGST  204 (309)
T ss_dssp             SSSCCEEEEETCTTCH-HHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred             ccCCCeEEEecCCCcH-HHHHHHh---CCCeEEEEeChHHHHHHHHHhhhhhc-ccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence            4678999999999755 4567777   58899999999999999999999888 554 799999999876532    246


Q ss_pred             cceEEeccc------cC--C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAAL------AG--N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaAL------Vg--m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||+|+++--      .+  .  ..++..++..+.++|+|||.+++-+
T Consensus       205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            999998622      11  1  2345667778889999998655544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=1.5e-09  Score=107.08  Aligned_cols=110  Identities=19%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccCCC-Ccce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEKLG-EYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~dL~-~FDv  206 (535)
                      ..|++||.||.|. |.++..+.+ |.+..+|+.||||+++++.|++.+...  +.-+.|++++.+|+.+...... .||+
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHHh-cCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            6789999999995 666666666 567789999999999999999987542  2113699999999988776543 5999


Q ss_pred             EEeccccCC-hh----hHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN-EE----EKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm-~e----dK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++..-+. .+    --.++++.+.+.|+|||++++...
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            999865421 11    136899999999999999999764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.88  E-value=1.2e-08  Score=94.19  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             hhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH
Q 041205           93 LSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL  172 (535)
Q Consensus        93 Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel  172 (535)
                      |-...+|-..|+.|+- +  ..++ .+...+....+.-.+++|||+|||+++++ +.++.  ....+|+|||+|+++++.
T Consensus        12 ~~~f~~~~~~l~qy~T-p--~~~a-~~~~~~~~~~~dl~g~~vLDlg~GtG~l~-i~a~~--~g~~~v~~vdi~~~~~~~   84 (201)
T d1wy7a1          12 LKGFKNPKVWLEQYRT-P--GNAA-SELLWLAYSLGDIEGKVVADLGAGTGVLS-YGALL--LGAKEVICVEVDKEAVDV   84 (201)
T ss_dssp             SCCCSSCCGGGTCCCC-C--HHHH-HHHHHHHHHTTSSTTCEEEEETCTTCHHH-HHHHH--TTCSEEEEEESCHHHHHH
T ss_pred             CCCCCCCCcccccCCC-C--HHHH-HHHHHHHHhcCCCCCCEEEECcCcchHHH-HHHHH--cCCCEEEEEcCcHHHHHH
Confidence            3444667666776543 1  2222 22222222233356899999999986665 55555  234589999999999999


Q ss_pred             HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecccc
Q 041205          173 ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAALA  213 (535)
Q Consensus       173 AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaALV  213 (535)
                      |+++++..+   .+.+|+++|+.++   ...||+|+++--.
T Consensus        85 a~~N~~~~~---~~~~~~~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          85 LIENLGEFK---GKFKVFIGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             HHHHTGGGT---TSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred             HHHHHHHcC---CCceEEECchhhh---CCcCcEEEEcCcc
Confidence            999999877   4789999998654   3569999987544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.8e-09  Score=102.62  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=85.3

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccCC-CCc
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEKL-GEY  204 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~dL-~~F  204 (535)
                      ....|++||.||.|. |.++-.+.+ |.+..+|+.+|||+++++.|++.+...  ..-..|++++.+|+.+..... +.|
T Consensus        75 ~~~~pk~vLiiGgG~-G~~~~~~l~-~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y  152 (285)
T d2o07a1          75 SHPNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF  152 (285)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             hCcCcCeEEEeCCCc-hHHHHHHHH-cCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence            346889999999994 667667766 566789999999999999999987532  112479999999998877644 459


Q ss_pred             ceEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          205 DCIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       205 DvVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+|+++..-+.    .---.++++.+.++|+|||++++...
T Consensus       153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            99999865322    12234789999999999999999754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.86  E-value=4e-09  Score=96.19  Aligned_cols=124  Identities=11%  Similarity=0.055  Sum_probs=90.6

Q ss_pred             hHHhHHHHHHHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEE
Q 041205          112 YVKLAKLEYGALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFL  190 (535)
Q Consensus       112 Yv~LirlE~~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi  190 (535)
                      ..+....-.+.+...+ ....+++|||++||++.++ +-.+.+  ...+|++||.|+++++.++++++..+ ..++++++
T Consensus        21 ~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g-~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~-~~~~~~i~   96 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLA-IEAVSR--GMDKSICIEKNFAALKVIKENIAITK-EPEKFEVR   96 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEE
T ss_pred             cCcCcHHHHHHHHHHHHHhcCCCEEEEccccccccc-ceeeec--chhHHHHHHHHHHHHHHHHHHhhhhh-cccccccc
Confidence            3444444444444444 3457899999999975555 444441  23479999999999999999999999 67899999


Q ss_pred             EccccccccC----CCCcceEEeccccCChhhHHHHHHHHHh--hcccCeEEEEEc
Q 041205          191 TCDIMEVKEK----LGEYDCIILAALAGNEEEKAKILGHIRK--YMKEGGVLLVRS  240 (535)
Q Consensus       191 ~GDA~el~~d----L~~FDvVfiaALVgm~edK~~VL~eL~r--vLKPGGvLVvRs  240 (535)
                      ++|+.+....    ...||+||+|--.+ ......+++.+.+  .|+|||++++-.
T Consensus        97 ~~D~~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1          97 KMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccchhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            9999875432    24699999995322 1356778888865  599999998853

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=6.6e-09  Score=100.94  Aligned_cols=110  Identities=18%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-CC-cCCCeEEEEccccccccCC-CCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD-DE-IEKRMKFLTCDIMEVKEKL-GEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-G~-Ls~rI~Fi~GDA~el~~dL-~~FDv  206 (535)
                      ..+++||.||.|. |.++..+.+ |.+..+|+.||||++.++.|++.+... |. -..|++++.+|+.+..... ..||+
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~-~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHh-cCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            6789999999995 666666666 566789999999999999999987532 21 1369999999998766544 45999


Q ss_pred             EEeccccCC--h--hhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN--E--EEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm--~--edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++..-+.  .  ---.++++.+.++|+|||++++..+
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            999865421  1  1256899999999999999998764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.5e-08  Score=95.02  Aligned_cols=136  Identities=17%  Similarity=0.184  Sum_probs=104.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -++.+|+||||| .|++++.+|- +.|+.+|+-||.+...+..-+.+++.+| + ++++++++.+.+... ...||+|..
T Consensus        64 ~~~~~ilDiGsG-aG~PGi~laI-~~p~~~~~Lves~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~~~~-~~~fD~V~s  138 (207)
T d1jsxa_          64 LQGERFIDVGTG-PGLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELK-L-ENIEPVQSRVEEFPS-EPPFDGVIS  138 (207)
T ss_dssp             CCSSEEEEETCT-TTTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-C-SSEEEEECCTTTSCC-CSCEEEEEC
T ss_pred             hcCCceeeeecc-CCceeeehhh-hcccceEEEEecchHHHHHHHHHHHHcC-C-cceeeeccchhhhcc-ccccceehh
Confidence            356899999999 5999999998 6899999999999999999999999999 5 689999999987543 346999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc--c-cCCcEEEEE---EcCCCcceeeeEEEecC
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH--E-LFDFKVLSI---FHPTNDVINSVVLLQLP  281 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp--d-l~GFeil~v---~hP~~eVINSVVvARK~  281 (535)
                      -|..    +...+++-+.+.+++||.+++--+...       .+.  . ..+|+...+   .-|..+--..+|+.+|.
T Consensus       139 RA~~----~~~~ll~~~~~~l~~~g~~~~~KG~~~-------~eEl~~~~~~~~~~~~~~~~~p~~~~~R~iv~ikk~  205 (207)
T d1jsxa_         139 RAFA----SLNDMVSWCHHLPGEQGRFYALKGQMP-------EDEIALLPEEYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             SCSS----SHHHHHHHHTTSEEEEEEEEEEESSCC-------HHHHHTSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             hhhc----CHHHHHHHHHHhcCCCcEEEEECCCCH-------HHHHHhhhcCCEEEEEEEecCCCCCCcEEEEEEEec
Confidence            8775    678899999999999999888543210       111  1 257766432   23555444567777763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=1.1e-08  Score=100.32  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=86.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc--CCcCCCeEEEEccccccccCC--CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSD--DEIEKRMKFLTCDIMEVKEKL--GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l--G~Ls~rI~Fi~GDA~el~~dL--~~FD  205 (535)
                      ..++|||.||.|. |.++..+.+ +.+..+|+.||||++.++.|++.+...  +.-..|++++.+|+.+.....  +.||
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCc-hHHHHHHHh-cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            6789999999994 677777766 566679999999999999999987431  112479999999998776543  3699


Q ss_pred             eEEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|++++.-+.    .---.++++.+.+.|+|||++++...
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            9999866422    11247899999999999999999764

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.77  E-value=1.1e-08  Score=101.72  Aligned_cols=110  Identities=18%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC--cCCCeEEEEccccccccCC-CCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE--IEKRMKFLTCDIMEVKEKL-GEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~--Ls~rI~Fi~GDA~el~~dL-~~FDv  206 (535)
                      ..|++||.||.|. |.++..+.+ |.+..+|+.||||+++++.|++.+.....  -..|++++.+|+.+..... ..||+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk-~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHH-cCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            6789999999994 677777766 55668999999999999999998764321  1379999999998876543 35999


Q ss_pred             EEeccccCC----hhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          207 IILAALAGN----EEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm----~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      |+++..-+.    .---.++++.+.+.|+|||++++...
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            999865421    12346789999999999999999864

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.3e-08  Score=90.76  Aligned_cols=104  Identities=7%  Similarity=0.057  Sum_probs=80.5

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC-CCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL-GEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL-~~FDvVfi  209 (535)
                      .+.+|||++||++ .-++-.+.+  ...+|+.||+|+++++.++++++..+ . .+++++++|+.+.+... ..||+||+
T Consensus        43 ~~~~vLDlfaGsG-~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~-~-~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSG-ALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTC-HHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhcccc-ceeeeEEec--CcceeEEEEEeechhhHHHHHHhhcc-c-cceeeeeecccccccccccccCEEEE
Confidence            5789999999975 444544441  33489999999999999999999988 4 67899999998776543 35999999


Q ss_pred             ccccCChhhHHHHHHHHHh--hcccCeEEEEEc
Q 041205          210 AALAGNEEEKAKILGHIRK--YMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~r--vLKPGGvLVvRs  240 (535)
                      +--.+. .....++..+.+  .|+|+|++++-.
T Consensus       118 DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPFRR-GLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSSST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cCcccc-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            954432 356777777765  599999999853

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=6.3e-08  Score=94.10  Aligned_cols=104  Identities=16%  Similarity=0.258  Sum_probs=77.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC-CCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK-LGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d-L~~FDvVf  208 (535)
                      .+..+|+|+|||. |.-++.+|+  .++++|+++|+|++|++.|++++++.| +.+++.++.+|..+.... .+.||+|+
T Consensus       109 ~~~~~vld~g~Gs-G~i~~~la~--~~~~~v~a~Dis~~Al~~A~~Na~~~~-~~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGS-GAIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTT-SHHHHHHHH--HSSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             ccccEEEEeeeee-ehhhhhhhh--cccceeeechhhhhHHHHHHHHHHHcC-CCceeEEeecccccccccccCcccEEE
Confidence            4567999999996 444555666  489999999999999999999999999 788999999998765433 25799998


Q ss_pred             eccc--------------------cC-C--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAAL--------------------AG-N--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaAL--------------------Vg-m--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..--                    .| .  ..-+.++   +.+.|+|||.+++--
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEI  236 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEEC
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEE
Confidence            6411                    10 0  1223333   356899999998854

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=6.7e-08  Score=92.63  Aligned_cols=144  Identities=13%  Similarity=0.196  Sum_probs=108.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccC---CCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEK---LGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~d---L~~FDv  206 (535)
                      ..+.+|+||||| .|+.+|.+|- ..|+.+|+-+|-+..-+..=+.+++++| + +++.++++.+.++...   ...||+
T Consensus        69 ~~~~~ilDiGSG-aGfPGi~laI-~~p~~~v~Lves~~KK~~FL~~v~~~L~-L-~n~~i~~~R~E~~~~~~~~~~~~D~  144 (239)
T d1xdza_          69 NQVNTICDVGAG-AGFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQ-L-ENTTFCHDRAETFGQRKDVRESYDI  144 (239)
T ss_dssp             GGCCEEEEECSS-SCTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-C-SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             cCCCeEEeecCC-CchHHHHHHH-hCCCccceeecchHHHHHHHHHHHHHhC-C-CCcEEEeehhhhccccccccccceE
Confidence            457899999999 5999999987 5899999999999999999999999999 5 6899999998766432   246999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-----ccCCcEEEE---EEcCCCcceeeeEEE
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-----ELFDFKVLS---IFHPTNDVINSVVLL  278 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-----dl~GFeil~---v~hP~~eVINSVVvA  278 (535)
                      |..-|..    .-..+++-+.+.+++||.+++--+....    ..+..     ...|+++..   ..-|..+.-..+|+.
T Consensus       145 v~sRAva----~l~~ll~~~~~~l~~~g~~i~~KG~~~~----~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i  216 (239)
T d1xdza_         145 VTARAVA----RLSVLSELCLPLVKKNGLFVALKAASAE----EELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVI  216 (239)
T ss_dssp             EEEECCS----CHHHHHHHHGGGEEEEEEEEEEECC-CH----HHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEhhhh----CHHHHHHHHhhhcccCCEEEEECCCChH----HHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEE
Confidence            9988765    6788999999999999998885432210    00010     124666543   333666555678888


Q ss_pred             ecCCCCC
Q 041205          279 QLPKDPP  285 (535)
Q Consensus       279 RK~~~~~  285 (535)
                      +|..+.|
T Consensus       217 ~K~~~~p  223 (239)
T d1xdza_         217 RKIKNTP  223 (239)
T ss_dssp             EECSCCC
T ss_pred             EECCCCC
Confidence            8764444

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=4.5e-08  Score=91.11  Aligned_cols=103  Identities=21%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             hhccCCCccccccCccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH
Q 041205           93 LSKISLPLNDLNRFPYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL  172 (535)
Q Consensus        93 Lls~~~pl~~L~~FpYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel  172 (535)
                      |-..++|-..|+.|+--   .+++..=...+..... -.|++|||+|||++.+ ++.++.  ....+|+|||+|+++++.
T Consensus        14 ~~~~~~~~~~leQy~T~---~~~a~~~~~~~~~~~d-l~Gk~VLDlGcGtG~l-~i~a~~--~ga~~V~~vDid~~a~~~   86 (197)
T d1ne2a_          14 LQQQGNFKNYLEQYPTD---ASTAAYFLIEIYNDGN-IGGRSVIDAGTGNGIL-ACGSYL--LGAESVTAFDIDPDAIET   86 (197)
T ss_dssp             SCCCC--------CCCC---HHHHHHHHHHHHHHTS-SBTSEEEEETCTTCHH-HHHHHH--TTBSEEEEEESCHHHHHH
T ss_pred             CCCCCCCCcccccCCCC---HHHHHHHHHHHHHcCC-CCCCEEEEeCCCCcHH-HHHHHH--cCCCcccccccCHHHHHH
Confidence            44556776777777652   3343322222222223 4689999999997544 566666  334679999999999999


Q ss_pred             HHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          173 ARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       173 AR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      |++++.       +++|+++|+.+++   +.||+|+..--
T Consensus        87 ar~N~~-------~~~~~~~D~~~l~---~~fD~Vi~NPP  116 (197)
T d1ne2a_          87 AKRNCG-------GVNFMVADVSEIS---GKYDTWIMNPP  116 (197)
T ss_dssp             HHHHCT-------TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             HHHccc-------cccEEEEehhhcC---CcceEEEeCcc
Confidence            999853       4689999987643   57999998633

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6e-08  Score=92.41  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc------CCCC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE------KLGE  203 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~------dL~~  203 (535)
                      .+..+|||||||++..+. .+|.+ .++++|+|+|+|+++++.|+++++..+ +++++.++.++..+...      ..+.
T Consensus        60 ~~~~~~LDiGtGsg~I~~-~l~~~-~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYP-LLGAT-LNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEII  136 (250)
T ss_dssp             CCCCEEEEESCTTTTHHH-HHHHH-HHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             cccceEEEeCCCchHHHH-HHHHh-CCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHHhhhhhhhhcccCc
Confidence            445799999999865554 45552 579999999999999999999999999 89999999877543222      1235


Q ss_pred             cceEEec
Q 041205          204 YDCIILA  210 (535)
Q Consensus       204 FDvVfia  210 (535)
                      ||+|+..
T Consensus       137 fD~ivsN  143 (250)
T d2h00a1         137 YDFCMCN  143 (250)
T ss_dssp             BSEEEEC
T ss_pred             eeEEEec
Confidence            9999865

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=3.2e-07  Score=87.05  Aligned_cols=98  Identities=16%  Similarity=0.241  Sum_probs=76.6

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ...-.+|+|||||+ |.-++.+++ .+|+.+++..|+- +.       ++..+ ..+||+|+.||..+   +....|+|+
T Consensus        79 f~~~~~vlDiGGG~-G~~~~~l~~-~~P~l~~~v~Dlp-~v-------i~~~~-~~~ri~~~~gd~~~---~~p~~D~~~  144 (244)
T d1fp1d2          79 FEGISTLVDVGGGS-GRNLELIIS-KYPLIKGINFDLP-QV-------IENAP-PLSGIEHVGGDMFA---SVPQGDAMI  144 (244)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEECH-HH-------HTTCC-CCTTEEEEECCTTT---CCCCEEEEE
T ss_pred             ccCCcEEEEecCCC-cHHHHHHHH-HCCCCeEEEecch-hh-------hhccC-CCCCeEEecCCccc---ccccceEEE
Confidence            36678999999997 555566666 3799999999984 33       44555 46899999999864   334579999


Q ss_pred             eccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +....|.  .++..++|+++++.|+|||+|++-+
T Consensus       145 l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         145 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            8766654  6778899999999999999988866

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=6.2e-07  Score=87.42  Aligned_cols=151  Identities=14%  Similarity=0.195  Sum_probs=104.0

Q ss_pred             ccchhhHHhHHHHHHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCC
Q 041205          107 PYYENYVKLAKLEYGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKR  186 (535)
Q Consensus       107 pYy~NYv~LirlE~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~r  186 (535)
                      .||..-....+.=+..+...+...++++|+|+-||. |.-++.||+   .+.+|+|||+++++++.|+++++..| + .+
T Consensus       188 sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~-G~fsl~La~---~~~~V~gvE~~~~ai~~A~~na~~n~-i-~n  261 (358)
T d1uwva2         188 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNG-L-QN  261 (358)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-C-CS
T ss_pred             hhhccchhhhhHHHHHHHHhhccCCCceEEEecccc-cccchhccc---cccEEEeccCcHHHHHHHHHhHHhcc-c-cc
Confidence            355554555555555566666667899999999995 555688888   56899999999999999999999999 4 78


Q ss_pred             eEEEEccccccccC----CCCcceEEecccc-CChhhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCcc-----c-
Q 041205          187 MKFLTCDIMEVKEK----LGEYDCIILAALA-GNEEEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVEH-----E-  255 (535)
Q Consensus       187 I~Fi~GDA~el~~d----L~~FDvVfiaALV-gm~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vdp-----d-  255 (535)
                      ++|+.+|+.+....    ...||+|++|--- |+    .+++..+.+ ++|.-++.+            .++|     | 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~----~~~~~~l~~-~~~~~ivYV------------SCnp~TlaRDl  324 (358)
T d1uwva2         262 VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA----AGVMQQIIK-LEPIRIVYV------------SCNPATLARDS  324 (358)
T ss_dssp             EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHHH-HCCSEEEEE------------ESCHHHHHHHH
T ss_pred             ceeeecchhhhhhhhhhhhccCceEEeCCCCccH----HHHHHHHHH-cCCCEEEEE------------eCCHHHHHHHH
Confidence            99999999765432    2459999998333 43    246777776 466543322            2222     2 


Q ss_pred             --c--CCcEEEE--EEc--CCCcceeeeEEEec
Q 041205          256 --L--FDFKVLS--IFH--PTNDVINSVVLLQL  280 (535)
Q Consensus       256 --l--~GFeil~--v~h--P~~eVINSVVvARK  280 (535)
                        +  .||++..  .++  |...-+-+|++.+|
T Consensus       325 ~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~R  357 (358)
T d1uwva2         325 EALLKAGYTIARLAMLDMFPHTGHLESMVLFSR  357 (358)
T ss_dssp             HHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred             HHHHHCCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence              1  5787753  233  54445567776654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.49  E-value=1.1e-07  Score=90.43  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=72.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhh---cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CC--C
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQ---HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KL--G  202 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~---~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL--~  202 (535)
                      .+|++|||||++ -|.|++++|..   +.+.++|+|||+++.....+      .. ..++|+|++||..+...  .+  .
T Consensus        79 ~KPk~ILEIGv~-~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~------~~-~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          79 LRPRTIVELGVY-NGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP------AS-DMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC------GG-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             hCCCEEEEECCC-CchHHHHHHHHHHhcCCCceEEecCcChhhhhhh------hc-cccceeeeecccccHHHHHHHHhc
Confidence            469999999998 57888988862   23679999999998653321      12 23789999999764322  22  2


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .||+||+++.+........ + .+.+.|+|||++++.+.
T Consensus       151 ~~dlIfID~~H~~~~v~~~-~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         151 AHPLIFIDNAHANTFNIMK-W-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSEEEEESSCSSHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred             CCCEEEEcCCcchHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence            4899999987543222222 2 35689999999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.45  E-value=8.3e-07  Score=80.84  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=76.7

Q ss_pred             CCCCEEEEEccCCChhh----HHHHHhhc---CCCcEEEEEeCChhHHHHHHHH------------------HhhcCC--
Q 041205          130 AQLKKVAFVGSGPMPLT----SIILASQH---MKSTHFDNIDIDETANNLARRI------------------VSSDDE--  182 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlT----AI~LAk~~---l~Ga~VtGIDIDpeAIelAR~l------------------i~~lG~--  182 (535)
                      .++-||+.+|||+ |-.    |+++....   ....+|+|.|+|+.+++.|++-                  +.+.+.  
T Consensus        23 ~~~lrIwsaGCst-GeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          23 HGEYRVWSAAAST-GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             CSCEEEEESCCTT-THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             CCCeEEEEeCCCC-chhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence            5677999999996 543    33343311   1245899999999999999842                  222220  


Q ss_pred             ---------cCCCeEEEEccccccc-cCCCCcceEEeccccC-C-hhhHHHHHHHHHhhcccCeEEEEEccc
Q 041205          183 ---------IEKRMKFLTCDIMEVK-EKLGEYDCIILAALAG-N-EEEKAKILGHIRKYMKEGGVLLVRSAK  242 (535)
Q Consensus       183 ---------Ls~rI~Fi~GDA~el~-~dL~~FDvVfiaALVg-m-~edK~~VL~eL~rvLKPGGvLVvRsa~  242 (535)
                               +...+.|...+..+.. ...+.||+||+-.... + .+.+.++++.+++.|+|||+|++-.+.
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE  173 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  173 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence                     1133556666654322 2346799999987764 3 677899999999999999999986554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.44  E-value=5.6e-07  Score=85.30  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=76.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ..-.+|+|||||. |..++.+++ .+|+.+++..|+. +       +++..+ ..+||+|+.||..+   +...+|++++
T Consensus        79 ~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dlp-~-------vi~~~~-~~~rv~~~~gD~f~---~~p~aD~~~l  144 (244)
T d1fp2a2          79 DGLESIVDVGGGT-GTTAKIICE-TFPKLKCIVFDRP-Q-------VVENLS-GSNNLTYVGGDMFT---SIPNADAVLL  144 (244)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEECH-H-------HHTTCC-CBTTEEEEECCTTT---CCCCCSEEEE
T ss_pred             cCceEEEEecCCc-cHHHHHHHH-hCCCCeEEEecCH-H-------HHHhCc-ccCceEEEecCccc---CCCCCcEEEE
Confidence            4457999999996 666677777 4899999999994 3       345667 57899999999864   2346899998


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccC---eEEEEEc
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEG---GVLLVRS  240 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPG---GvLVvRs  240 (535)
                      ...+|.  .++-.++|+++++.|+||   |++++-+
T Consensus       145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            877764  677789999999999998   6666654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.32  E-value=1.8e-06  Score=81.16  Aligned_cols=97  Identities=15%  Similarity=0.224  Sum_probs=75.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      ....+|+|||||. |.-++-+++ .+|+.+++++|+-+.        ++... ...+++|+.+|..+   +....|++++
T Consensus        80 ~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dlp~v--------i~~~~-~~~r~~~~~~d~~~---~~P~ad~~~l  145 (243)
T d1kyza2          80 EGLKSLVDVGGGT-GAVINTIVS-KYPTIKGINFDLPHV--------IEDAP-SYPGVEHVGGDMFV---SIPKADAVFM  145 (243)
T ss_dssp             SSCSEEEEETCTT-SHHHHHHHH-HCTTSEEEEEECTTT--------TTTCC-CCTTEEEEECCTTT---CCCCCSCEEC
T ss_pred             cCCcEEEEecCCC-cHHHHHHHH-HCCCCeEEEcccHHh--------hhhcc-cCCceEEecccccc---cCCCcceEEE
Confidence            4468999999995 666777777 479999999999653        34444 45799999999864   2234577777


Q ss_pred             ccccCC--hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          210 AALAGN--EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       210 aALVgm--~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....|.  .++...+|+++++.|+|||.+++-+
T Consensus       146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         146 KWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            665554  7889999999999999999887754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.21  E-value=1.7e-06  Score=84.84  Aligned_cols=111  Identities=21%  Similarity=0.213  Sum_probs=87.3

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +...++++|||+-+||+|=|+.+ |......+.|+++|+++..+...+++++++| . .++.+...|..........||.
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l-~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-~-~~i~~~~~d~~~~~~~~~~fD~  188 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYL-AQLMRNDGVIYAFDVDENRLRETRLNLSRLG-V-LNVILFHSSSLHIGELNVEFDK  188 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHH-HHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-C-CSEEEESSCGGGGGGGCCCEEE
T ss_pred             ccCCccceeeecccchhhhhHhh-hhhcccccceeeeccCHHHHHHHHHHHHHHH-h-hccccccccccccccccccccE
Confidence            35689999999999997776654 4434567899999999999999999999999 4 6788888898776655567999


Q ss_pred             EEecccc---CC---h----------------hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALA---GN---E----------------EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALV---gm---~----------------edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++|+-=   |.   .                .--.++|.+..+.+||||+||+-+
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            9998642   21   0                111356788899999999999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=6e-07  Score=79.81  Aligned_cols=107  Identities=20%  Similarity=0.174  Sum_probs=72.9

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc--
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV--  197 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el--  197 (535)
                      ..+.+...+.++++||-+|+||+|+.++.+|++  .|+ +|+++|.+++..+.|+++    | ...-+.....|..+.  
T Consensus        18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~~~~~~~a~~l----G-a~~vi~~~~~~~~~~~~   90 (182)
T d1vj0a2          18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEEI----G-ADLTLNRRETSVEERRK   90 (182)
T ss_dssp             HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHHT----T-CSEEEETTTSCHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEECCCccchhheecccc--cccccccccccccccccccccc----c-ceEEEeccccchHHHHH
Confidence            344444456889999999999999999999994  476 899999999999888764    5 111111111121111  


Q ss_pred             --c--cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 --K--EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 --~--~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                        .  ..-.+||+||-....      ...++...+.++|||++++-.
T Consensus        91 ~i~~~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          91 AIMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHhhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence              1  112359999865322      346788889999999998753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.19  E-value=5.6e-06  Score=75.67  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-----CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-----KL  201 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-----dL  201 (535)
                      +.+.++..++|..+|++|.|..+|-+    +++|+|+|+|++++..|++.   .   .+++.|++++-.++..     ..
T Consensus        14 l~~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~---~---~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2          14 LAVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGL---H---LPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHT---C---CTTEEEEESCGGGHHHHHHHTTC
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhc---c---ccceeEeehHHHHHHHHHHHcCC
Confidence            34588999999999999999888743    57999999999999999874   2   2689999998766443     23


Q ss_pred             CCcceEEeccccCC---------hhhHHHHHHHHHhhcccCeEEEEEccccc
Q 041205          202 GEYDCIILAALAGN---------EEEKAKILGHIRKYMKEGGVLLVRSAKGA  244 (535)
Q Consensus       202 ~~FDvVfiaALVgm---------~edK~~VL~eL~rvLKPGGvLVvRsa~Gl  244 (535)
                      +.+|.|++|-.+..         .......|+.....|+|||++++-+.|+.
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            56999999865521         12445578999999999999999887763

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.19  E-value=4.8e-06  Score=80.20  Aligned_cols=117  Identities=16%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHH---hhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILA---SQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LA---k~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+....++.+|+|.|||++++..-.+.   .+......++|+|+|+.++..|+.+....+   ....+.++|.... .
T Consensus       109 ~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~-~  184 (328)
T d2f8la1         109 LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---QKMTLLHQDGLAN-L  184 (328)
T ss_dssp             HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---CCCEEEESCTTSC-C
T ss_pred             HHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh---hhhhhhccccccc-c
Confidence            33344446788999999998766543321   212345689999999999999999988766   4677888887542 2


Q ss_pred             CCCCcceEEeccccCCh--h----------------hHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          200 KLGEYDCIILAALAGNE--E----------------EKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~--e----------------dK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ....||+|+..--.+..  .                -..-++.++.+.|+|||++++--+.+
T Consensus       185 ~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         185 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            33579999987443320  1                12236999999999999877765543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.17  E-value=3.1e-06  Score=80.01  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +...+.+.++++|||||||+|-+|..++ +   .+.+|++||+|+.+++..++.....    +++++++||+.++..
T Consensus        13 iv~~~~~~~~d~VlEIGpG~G~LT~~Ll-~---~~~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l~~~~   81 (235)
T d1qama_          13 IMTNIRLNEHDNIFEIGSGKGHFTLELV-Q---RCNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHTTCCCCTTCEEEEECCTTSHHHHHHH-H---HSSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC
T ss_pred             HHHhcCCCCCCeEEEECCCchHHHHHHH-h---CcCceEEEeeccchHHHHHHHhhcc----cchhhhhhhhhhccc
Confidence            3344456899999999999988887665 5   3589999999999999999876442    589999999987643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.17  E-value=5.2e-06  Score=74.85  Aligned_cols=106  Identities=9%  Similarity=0.158  Sum_probs=80.5

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC-CCeEEEEccccccccC---CCCcce
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE-KRMKFLTCDIMEVKEK---LGEYDC  206 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls-~rI~Fi~GDA~el~~d---L~~FDv  206 (535)
                      .+.+|||+-||++.++-=.+.+   ...+|+.||.|.++++..+++++.++ .. ....+++.|+.+....   ...||+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR---GA~~v~fVE~~~~a~~~ik~Ni~~l~-~~~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             ccceEeecccCccceeeeeeee---cceeeEEeecccchhhhHhhHHhhhc-ccccccccccccccccccccccCCcccE
Confidence            5789999999976555444433   33489999999999999999999998 54 4678888888765432   235999


Q ss_pred             EEeccccCChhhHHHHHHHHHh--hcccCeEEEEEcc
Q 041205          207 IILAALAGNEEEKAKILGHIRK--YMKEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~r--vLKPGGvLVvRsa  241 (535)
                      ||+|--.+. .....++..+..  .|++||++++-..
T Consensus       119 IFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         119 VFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             EEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            999955432 456778888865  6999999999654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=7.7e-06  Score=79.19  Aligned_cols=110  Identities=16%  Similarity=0.110  Sum_probs=80.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC---CC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL---GE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL---~~  203 (535)
                      +...++.+|||+.+||+|-|+. +|.....++.|+++|+++..++..+++++++| + .++.+...|...+....   ..
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~-la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-~-~~~~~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSH-LAALLKNQGKIFAFDLDAKRLASMATLLARAG-V-SCCELAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHH-HHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGSCTTCGGGTT
T ss_pred             cCCCccceEEecccchhhHHHH-HHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-c-cceeeeehhhhhhcccccccce
Confidence            3457899999999999776654 55534567899999999999999999999999 4 68999999987654432   45


Q ss_pred             cceEEeccc---cCC---hhh------------------HHHHHHHHHhhcccCeEEEEEc
Q 041205          204 YDCIILAAL---AGN---EEE------------------KAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       204 FDvVfiaAL---Vgm---~ed------------------K~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ||.|++|+-   -|.   .++                  -.+++.+.. .++|||.||+-+
T Consensus       167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT  226 (293)
T d2b9ea1         167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST  226 (293)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred             eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence            999999955   221   000                  022444555 479999988754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.13  E-value=7.7e-06  Score=71.26  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=71.9

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc----cc----cc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI----ME----VK  198 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA----~e----l~  198 (535)
                      .++.++++|+-+|+|++|+.++.+|+.  .|++|+++|.+++..+.|+++    |   ....+..-+.    .+    +.
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~~r~~~a~~~----g---a~~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNC----G---ADVTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHT----T---CSEEEECCTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhh--hcccccccchHHHHHHHHHHc----C---CcEEEeccccccccchhhhhhh
Confidence            356899999999999999999999994  689999999999999998875    3   1122221111    00    01


Q ss_pred             cC-CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 EK-LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~d-L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .. -..+|+||-....      ...++...+.++|||++++-.
T Consensus        93 ~~~g~g~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          93 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccCCceeeecCCC------hHHHHHHHHHHhcCCceEEEe
Confidence            11 1358999865433      467888889999999999854

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.9e-06  Score=73.71  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-----C
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-----K  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-----d  200 (535)
                      ..+.++++|+-+|+||+|+.++.+|+.  .|+ +|+++|.+++..+.|+++    | ...-+.....|..+...     .
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~~~rl~~a~~~----G-a~~~~~~~~~~~~~~~~~~~~~~   94 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKEI----G-ADLVLQISKESPQEIARKVEGQL   94 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT----T-CSEEEECSSCCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCCHHHHHHHHHh----C-CcccccccccccccccccccccC
Confidence            356889999999999999999999994  455 899999999999988765    5 21111111111111110     1


Q ss_pred             CCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          201 LGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       201 L~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      -..||+||-....      ...++...+.++|||++++-..
T Consensus        95 g~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          95 GCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             TSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCceEEEeccCC------chhHHHHHHHhcCCCEEEEEec
Confidence            1358999875443      5578999999999999998653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.03  E-value=2.2e-06  Score=76.02  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc---cccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD---IMEV  197 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD---A~el  197 (535)
                      ..+.+...+.++++||-+|+|++|+.++.+|+. .....|+.+|.+++..+.|+++    | ..   .++.-+   ..+.
T Consensus        18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~-~g~~~v~~~~~~~~k~~~a~~~----G-a~---~~i~~~~~~~~~~   88 (174)
T d1f8fa2          18 GACINALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDIVESRLELAKQL----G-AT---HVINSKTQDPVAA   88 (174)
T ss_dssp             HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHHH----T-CS---EEEETTTSCHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccc-cccceeeeeccHHHHHHHHHHc----C-Ce---EEEeCCCcCHHHH
Confidence            344444567899999999999999999999984 4445788899999998888764    5 21   222222   2211


Q ss_pred             cc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          198 KE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       198 ~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..  ..+.||+||-....      ...++...+.++|||++++-.
T Consensus        89 i~~~t~gg~D~vid~~G~------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          89 IKEITDGGVNFALESTGS------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHTTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHcCCCCcEEEEcCCc------HHHHHHHHhcccCceEEEEEe
Confidence            11  12469999976443      567788899999999998854

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=7.9e-06  Score=78.80  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             cccCccchhhHHhHHHHHHHHH-HhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          103 LNRFPYYENYVKLAKLEYGALI-ENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       103 L~~FpYy~NYv~LirlE~~lL~-~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      +...+.|..-.=.++.+-..+. ..+...++.+|||+-+||+|=|+.+. . ...++.|+++|+++..+...+++++++|
T Consensus        73 l~~~~~~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la-~-l~~~~~i~a~d~~~~R~~~l~~~~~r~g  150 (284)
T d1sqga2          73 VHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHIL-E-VAPEAQVVAVDIDEQRLSRVYDNLKRLG  150 (284)
T ss_dssp             GGGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHH-H-HCTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             hhhChhhhccEEEeccccccccccccCccccceeEeccCccccchhhhh-h-hhhhhhhhhhhcchhhhhhHhhhhhccc
Confidence            3444544432222333332222 23456889999999999999887654 4 3567899999999999999999999999


Q ss_pred             CcCCCeEEEEcccccccc-CCCCcceEEecccc---CC---hhh----------------HHHHHHHHHhhcccCeEEEE
Q 041205          182 EIEKRMKFLTCDIMEVKE-KLGEYDCIILAALA---GN---EEE----------------KAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       182 ~Ls~rI~Fi~GDA~el~~-dL~~FDvVfiaALV---gm---~ed----------------K~~VL~eL~rvLKPGGvLVv  238 (535)
                       + ..+.....|...... ....||.|++|+-=   |.   .++                =.++|.+..+.++|||+||+
T Consensus       151 -~-~~~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvY  228 (284)
T d1sqga2         151 -M-KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY  228 (284)
T ss_dssp             -C-CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             -c-cceeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence             4 345444444332221 22469999998643   21   111                24678889999999999998


Q ss_pred             Ec
Q 041205          239 RS  240 (535)
Q Consensus       239 Rs  240 (535)
                      -+
T Consensus       229 sT  230 (284)
T d1sqga2         229 AT  230 (284)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.99  E-value=8.7e-06  Score=81.99  Aligned_cols=107  Identities=21%  Similarity=0.130  Sum_probs=83.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcC--------------CCeEEEEcccc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIE--------------KRMKFLTCDIM  195 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls--------------~rI~Fi~GDA~  195 (535)
                      -++.+|||..||+ |.=+|..|.. .+..+|+..|+|+++++.++++++..| ++              ..+.+.+.|+.
T Consensus        44 ~~~~~vLD~~sas-G~rsiRya~E-~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~~~~~~~~~~~~~~~~~~~~~~Da~  120 (375)
T d2dula1          44 LNPKIVLDALSAT-GIRGIRFALE-TPAEEVWLNDISEDAYELMKRNVMLNF-DGELRESKGRAILKGEKTIVINHDDAN  120 (375)
T ss_dssp             HCCSEEEESSCTT-SHHHHHHHHH-SSCSEEEEEESCHHHHHHHHHHHHHHC-CSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred             hCCCEEEEcCCCc-cHHHHHHHHh-CCCCEEEEecCCHHHHHHHHHHHHhcC-ccccccccccccccccceeEeehhhhh
Confidence            3689999999997 5555655553 456699999999999999999998765 32              34778888887


Q ss_pred             ccccCCC-CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          196 EVKEKLG-EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       196 el~~dL~-~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      .+....+ .||+|.+|- .|   ....+++...+.++.||+|.+-..++
T Consensus       121 ~~~~~~~~~fDvIDiDP-fG---s~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         121 RLMAERHRYFHFIDLDP-FG---SPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             HHHHHSTTCEEEEEECC-SS---CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             hhhHhhcCcCCcccCCC-CC---CcHHHHHHHHHHhccCCEEEEEecCc
Confidence            6655444 499999995 44   45779999999999999999977544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.97  E-value=6.6e-07  Score=85.38  Aligned_cols=77  Identities=22%  Similarity=0.286  Sum_probs=57.3

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCC
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGE  203 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~  203 (535)
                      ...+.+.++++|||||||+|.+|.. |++   .+.+|++||+|+.+++.+++....    ..+++++++|+.++..+...
T Consensus        22 v~~~~~~~~d~VLEIGpG~G~LT~~-L~~---~~~~v~aIE~D~~l~~~l~~~~~~----~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          22 IKQLNLKETDTVYEIGTGKGHLTTK-LAK---ISKQVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHCCCCSSEEEEECSCCCSSCSHH-HHH---HSSEEEESSSSCSSSSSSSCTTTT----CSEEEECCSCCTTTTCCCSS
T ss_pred             HHhcCCCCCCeEEEECCCccHHHHH-HHh---hcCceeEeeecccchhhhhhhhhh----ccchhhhhhhhhccccccce
Confidence            3445568899999999999888876 556   368999999999998877655432    25899999999876544334


Q ss_pred             cceEE
Q 041205          204 YDCII  208 (535)
Q Consensus       204 FDvVf  208 (535)
                      ++.|+
T Consensus        94 ~~~vv   98 (245)
T d1yuba_          94 RYKIV   98 (245)
T ss_dssp             EEEEE
T ss_pred             eeeEe
Confidence            44444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=1.7e-06  Score=76.11  Aligned_cols=101  Identities=19%  Similarity=0.183  Sum_probs=70.1

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc-cCCCCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK-EKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~-~dL~~FD  205 (535)
                      .++.++++|+-+|+|++|..++.+|+.  .|++|+++|.+++..+.|+++    | .  ...+...+-.+.. ...+.||
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~l----G-a--~~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKM----G-A--DHYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHH----T-C--SEEEEGGGTSCHHHHSCSCEE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhcc----C-C--cEEeeccchHHHHHhhhcccc
Confidence            467899999999999999999999994  589999999999999888764    5 2  1112111111212 2234699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +|+.....+.    ...+....+.++|||++++-.
T Consensus        94 ~vi~~~~~~~----~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLT----DIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCST----TCCTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCc----cchHHHHHHHhhccceEEEec
Confidence            8886422211    112456788999999998854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.95  E-value=3.4e-06  Score=73.44  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=69.7

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc----ccCCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV----KEKLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el----~~dL~  202 (535)
                      ..++++++|+-+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +| ..   .++..+-.+.    .....
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~----~G-a~---~~i~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDDAKLELARK----LG-AS---LTVNARQEDPVEAIQRDIG   92 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TT-CS---EEEETTTSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHH--cCCccceecchhhHHHhhhc----cC-cc---ccccccchhHHHHHHHhhc
Confidence            456899999999999999999999994  47999999999999988875    45 21   1222111111    11123


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ++|.++.++..      ...++...+.++|||++++-.
T Consensus        93 g~~~~i~~~~~------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          93 GAHGVLVTAVS------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SEEEEEECCSC------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCccccccccc------chHHHHHHHHhcCCcEEEEEE
Confidence            46666655443      246788899999999998853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=4.6e-06  Score=72.08  Aligned_cols=101  Identities=20%  Similarity=0.267  Sum_probs=69.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-cccCCCCcc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKEKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~dL~~FD  205 (535)
                      .++.++++||-+|+||+|+.++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....|..+ +.....++|
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~~~r~~~~k~----~G-a~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKE----LG-ADLVVNPLKEDAAKFMKEKVGGVH   95 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TT-CSEEECTTTSCHHHHHHHHHSSEE
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCCHHHhhhhhh----cC-cceecccccchhhhhcccccCCCc
Confidence            456899999999999999999999994  67899999999999887765    45 21101110111111 111113455


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .++.++..      ...++...+.|+|||.+++-.
T Consensus        96 ~~v~~~~~------~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          96 AAVVTAVS------KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred             eEEeecCC------HHHHHHHHHHhccCCceEecc
Confidence            55555433      467889999999999998853

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.93  E-value=1.8e-06  Score=77.32  Aligned_cols=101  Identities=17%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc-ccc--CCC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME-VKE--KLG  202 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e-l~~--dL~  202 (535)
                      ..+.++++||-+|||++|+.++.+|+  ..|+ +|+++|.+++..+.|+++    | ...-|.+...+..+ +..  +-.
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak--~~Ga~~Vi~~d~~~~r~~~a~~l----G-a~~~i~~~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAK--LRGAGRIIGVGSRPICVEAAKFY----G-ATDILNYKNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSCEEEECCCHHHHHHHHHH----T-CSEEECGGGSCHHHHHHHHTTTS
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhh--cccccccccccchhhhHHHHHhh----C-ccccccccchhHHHHHHHHhhcc
Confidence            56789999999999999999999999  3565 799999999999888754    4 11111111111111 111  113


Q ss_pred             CcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          203 EYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       203 ~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .||+||-....      ...+++..+.++|||.+++-.
T Consensus        96 G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          96 GVDRVIMAGGG------SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             CEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CcceEEEccCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            59999875443      346788889999999999854

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.7e-05  Score=75.52  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             HHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          123 LIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       123 L~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +...+.+.+++.|+|||+|++.+|-.++ +   .+.+|++||+|+..++.-++.+.... ...+++++.+|+.+.  ++.
T Consensus        13 Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll-~---~~~~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~i~~D~l~~--~~~   85 (278)
T d1zq9a1          13 IIDKAALRPTDVVLEVGPGTGNMTVKLL-E---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKT--DLP   85 (278)
T ss_dssp             HHHHTCCCTTCEEEEECCTTSTTHHHHH-H---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTS--CCC
T ss_pred             HHHHhCCCCCCEEEEECCCchHHHHHHH-h---cCCcEEEEEEccchhHHHHHHHhhhc-cccchhhhHHHHhhh--hhh
Confidence            3344566789999999999999997765 4   25799999999999999999887765 457899999999754  334


Q ss_pred             CcceEE
Q 041205          203 EYDCII  208 (535)
Q Consensus       203 ~FDvVf  208 (535)
                      .++.|+
T Consensus        86 ~~~~vV   91 (278)
T d1zq9a1          86 FFDTCV   91 (278)
T ss_dssp             CCSEEE
T ss_pred             hhhhhh
Confidence            455555

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.83  E-value=5.1e-06  Score=75.73  Aligned_cols=105  Identities=18%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEE--EEcccc----ccccC
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKF--LTCDIM----EVKEK  200 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~F--i~GDA~----el~~d  200 (535)
                      ..++++++||-+||||+|+.++.+|+ +...++|+++|.+++.++.|+++    | .  ...+  ...|..    ++. .
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak-~~ga~~Vi~~d~~~~rl~~a~~~----G-a--~~~~~~~~~~~~~~i~~~t-~   91 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDLNPARLAHAKAQ----G-F--EIADLSLDTPLHEQIAALL-G   91 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHT----T-C--EEEETTSSSCHHHHHHHHH-S
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHH-hhcccceeeecccchhhHhhhhc----c-c--cEEEeCCCcCHHHHHHHHh-C
Confidence            56799999999999999999999998 45566999999999999988865    4 1  1111  011111    111 2


Q ss_pred             CCCcceEEeccccC--------C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          201 LGEYDCIILAALAG--------N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       201 L~~FDvVfiaALVg--------m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+|+||-+....        + .......++...+.++|||++++-.
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            24589998543210        0 1124678999999999999998853

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.3e-05  Score=70.10  Aligned_cols=105  Identities=21%  Similarity=0.233  Sum_probs=73.4

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      +..+. ...+.++++||-+|+|++|+.++.+|+.  .|++++.+|.+++..+.+++    +| .  ...+-..+-.....
T Consensus        20 y~al~-~~~~~~G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~~~~~~~~a~~----lG-a--d~~i~~~~~~~~~~   89 (168)
T d1uufa2          20 YSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKA----LG-A--DEVVNSRNADEMAA   89 (168)
T ss_dssp             HHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HT-C--SEEEETTCHHHHHT
T ss_pred             HHHHH-HhCCCCCCEEEEeccchHHHHHHHHhhc--ccccchhhccchhHHHHHhc----cC-C--cEEEECchhhHHHH
Confidence            34443 3567899999999999999999999994  58999999999998877664    45 2  12221122111222


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....||+||-....      ...+....+.++|||++++-.
T Consensus        90 ~~~~~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          90 HLKSFDFILNTVAA------PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTTCEEEEEECCSS------CCCHHHHHTTEEEEEEEEECC
T ss_pred             hcCCCceeeeeeec------chhHHHHHHHHhcCCEEEEec
Confidence            33569999976443      123567778999999999854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.82  E-value=8.5e-06  Score=72.60  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=71.5

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--cccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--IMEV  197 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A~el  197 (535)
                      +..+.....++++++||-+|+|++|+.++.+|+. ....+|+++|++++.++.|++    +| ...-|.+...|  ..+.
T Consensus        16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~-~G~~~Vi~~d~~~~kl~~a~~----lG-a~~~i~~~~~d~~~~~~   89 (174)
T d1p0fa2          16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKA-AGASRIIGVGTHKDKFPKAIE----LG-ATECLNPKDYDKPIYEV   89 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHH----TT-CSEEECGGGCSSCHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHH-cCCceeeccCChHHHHHHHHH----cC-CcEEEcCCCchhHHHHH
Confidence            3344444567999999999999999999999993 434689999999999998876    45 11112111222  1111


Q ss_pred             cc--CCCCcceEEeccccCChhhHHHHHHHHHhhccc-CeEEEEEc
Q 041205          198 KE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKE-GGVLLVRS  240 (535)
Q Consensus       198 ~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKP-GGvLVvRs  240 (535)
                      ..  ..+.+|+||-....      ...+......+++ +|.+++-.
T Consensus        90 ~~~~~~~G~d~vid~~g~------~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          90 ICEKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             HHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHhcCCCCcEEEEcCCC------chHHHHHHHHHHHhcCceEEEE
Confidence            11  22469999986443      4455666666655 58887743

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.78  E-value=1e-05  Score=72.36  Aligned_cols=108  Identities=22%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc--ccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD--IMEVK  198 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD--A~el~  198 (535)
                      ..+.....+.++++||-+||||+|+.++.+|+. .....|+.+|.+++..+.|+++    | ...-+.+...|  .....
T Consensus        18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~-~Ga~~Vi~~d~~~~r~~~a~~~----G-a~~~i~~~~~~~~~~~~~   91 (174)
T d1e3ia2          18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKI-AGASRIIAIDINGEKFPKAKAL----G-ATDCLNPRELDKPVQDVI   91 (174)
T ss_dssp             HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHT----T-CSEEECGGGCSSCHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-hCCceeeeeccchHHHHHHHHh----C-CCcccCCccchhhhhhhH
Confidence            334444567899999999999999999999993 4334799999999998888764    4 11111111111  01111


Q ss_pred             c--CCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          199 E--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       199 ~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                      .  .-..+|+||-....      ...++...+.++|| |++++-.
T Consensus        92 ~~~~~~G~d~vie~~G~------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          92 TELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             HHHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             hhhhcCCCcEEEEeccc------chHHHHHHHHhhcCCeEEEecC
Confidence            1  12469999976554      55789999999996 8988853

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.77  E-value=1.3e-05  Score=70.54  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=73.5

Q ss_pred             HHHHHhh-CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc---cc
Q 041205          121 GALIENT-GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI---ME  196 (535)
Q Consensus       121 ~lL~~~~-~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA---~e  196 (535)
                      ..+.+.. .+.++++||-+|+|++|+.++.+|+ +.....|+++|.+++..+.++++    | . +  .++..+-   .+
T Consensus        21 ~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~-~~g~~~vv~~~~~~~k~~~~~~~----g-a-~--~~i~~~~~~~~~   91 (172)
T d1h2ba2          21 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLK-VMTPATVIALDVKEEKLKLAERL----G-A-D--HVVDARRDPVKQ   91 (172)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HHCCCEEEEEESSHHHHHHHHHT----T-C-S--EEEETTSCHHHH
T ss_pred             HHHHHhhhccCCCCEEEEeCCChHHHHHHHHHH-hhcCcccccccchhHHHHHHhhc----c-c-c--eeecCcccHHHH
Confidence            3444433 3578999999999999999999998 34457899999999988888754    4 1 1  2222221   11


Q ss_pred             ccc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          197 VKE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       197 l~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...  ....+|+||-....      ...++...+.+++||++++-.
T Consensus        92 ~~~~~~~~g~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          92 VMELTRGRGVNVAMDFVGS------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHTTTCCEEEEEESSCC------HHHHHHGGGGEEEEEEEEECC
T ss_pred             HHHhhCCCCceEEEEecCc------chHHHHHHHHHhCCCEEEEEe
Confidence            111  22359999976443      456888999999999999853

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.69  E-value=0.0002  Score=63.45  Aligned_cols=105  Identities=16%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      .+...++.+|||.|||++++..-.+ +++.....++|+|+|+.++.           +.....++++|..... ....||
T Consensus        14 l~~~~~~~~IlDp~~G~G~fl~~~~-~~~~~~~~i~g~ei~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~fd   80 (223)
T d2ih2a1          14 LAEAPRGGRVLEPACAHGPFLRAFR-EAHGTAYRFVGVEIDPKALD-----------LPPWAEGILADFLLWE-PGEAFD   80 (223)
T ss_dssp             HCCCCTTCEEEEETCTTCHHHHHHH-HHHCSCSEEEEEESCTTTCC-----------CCTTEEEEESCGGGCC-CSSCEE
T ss_pred             hcCCCCcCEEEECCCchHHHHHHHH-HhccccceEEeeecCHHHHh-----------hcccceeeeeehhccc-cccccc
Confidence            3455788999999999877754443 43566788999999997642           2345677888876533 235699


Q ss_pred             eEEeccccCC-----------------------------hhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          206 CIILAALAGN-----------------------------EEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       206 vVfiaALVgm-----------------------------~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      +|+..--.+.                             ..-+..++.+..+.|+|||++++-.+.+
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            9886533211                             0013467789999999999988766543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.9e-05  Score=69.37  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=71.2

Q ss_pred             HHHHhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc--
Q 041205          122 ALIENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK--  198 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~--  198 (535)
                      .+.....+.++++||-+| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|..+..  
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~vi~~~~~~~~~~i~~   91 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQ----NG-AHEVFNHREVNYIDKIKK   91 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-CSEEEETTSTTHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccc--cCcccccccccccccccccc----cC-cccccccccccHHHHhhh
Confidence            344444678999999999 59999999999994  58999999999887777664    56 3221111112221111  


Q ss_pred             -cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          199 -EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       199 -~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                       .....||+||-.  +|     ...++...+.|+|||+++.-
T Consensus        92 ~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          92 YVGEKGIDIIIEM--LA-----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHCTTCEEEEEES--CH-----HHHHHHHHHHEEEEEEEEEC
T ss_pred             hhccCCceEEeec--cc-----HHHHHHHHhccCCCCEEEEE
Confidence             122459988864  22     24688889999999999885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.63  E-value=2.3e-05  Score=69.99  Aligned_cols=108  Identities=12%  Similarity=0.051  Sum_probs=69.4

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc-c-cc
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM-E-VK  198 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~-e-l~  198 (535)
                      ..+.+...+.+++.|+-+|+|++|+.++.+|+ +....+|+++|.+++.++.|+++=...     -|.....|.. + +.
T Consensus        19 ~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak-~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-----~in~~~~~~~~~~~~   92 (176)
T d1d1ta2          19 GAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCK-SAGASRIIGIDLNKDKFEKAMAVGATE-----CISPKDSTKPISEVL   92 (176)
T ss_dssp             HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHHTCSE-----EECGGGCSSCHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEECCCchhHHHHHHHH-HcCCceEEEecCcHHHHHHHHhcCCcE-----EECccccchHHHHHH
Confidence            34444456789999999999999999999999 444479999999999999998762221     1111111110 0 11


Q ss_pred             --cCCCCcceEEeccccCChhhHHHHHHHH-HhhcccCeEEEEEc
Q 041205          199 --EKLGEYDCIILAALAGNEEEKAKILGHI-RKYMKEGGVLLVRS  240 (535)
Q Consensus       199 --~dL~~FDvVfiaALVgm~edK~~VL~eL-~rvLKPGGvLVvRs  240 (535)
                        ..-.++|+|+.....      ...+... ....+++|++++-.
T Consensus        93 ~~~~g~G~d~vi~~~g~------~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          93 SEMTGNNVGYTFEVIGH------LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHHHTSCCCEEEECSCC------HHHHHHHHTTSCTTTCEEEECS
T ss_pred             HHhccccceEEEEeCCc------hHHHHHHHHHhhcCCeEEEEEE
Confidence              122469999986443      3334444 44445558888754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00024  Score=64.21  Aligned_cols=133  Identities=16%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--------C
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--------K  200 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--------d  200 (535)
                      +.++.+|+|+||+|+|+|-... ++..+...|+++|+.+-           .. + .++.|+++|..+...        .
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~-~~~~~~~~v~~vDl~~~-----------~~-i-~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVV-TQIGGKGRIIACDLLPM-----------DP-I-VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHH-HHHCTTCEEEEEESSCC-----------CC-C-TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEeccCCcceEEEE-eeccccceEEEeecccc-----------cc-c-CCceEeecccccchhhhhhhhhcc
Confidence            4789999999999999986554 43456789999998762           12 2 578999999875321        2


Q ss_pred             CCCcceEEecccc---CC-hhh-------HHHHHHHHHhhcccCeEEEEEcccccc--cccCCCCcccc-CCcEEEEEEc
Q 041205          201 LGEYDCIILAALA---GN-EEE-------KAKILGHIRKYMKEGGVLLVRSAKGAR--AFLYPVVEHEL-FDFKVLSIFH  266 (535)
Q Consensus       201 L~~FDvVfiaALV---gm-~ed-------K~~VL~eL~rvLKPGGvLVvRsa~GlR--~fLYP~Vdpdl-~GFeil~v~h  266 (535)
                      ...||+|+.|...   |. ..|       -...+.-+.+.|++||.+++.-.+|-.  .++|     .+ .-|+.+.++.
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~-----~l~~~F~~V~~~K  160 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR-----EIRSLFTKVKVRK  160 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH-----HHHHHEEEEEEEC
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHH-----HHHhhcCEEEEEC
Confidence            2469999998664   22 111       124455668899999999998766521  0111     22 3477777888


Q ss_pred             CCCc---ceeeeEEEec
Q 041205          267 PTND---VINSVVLLQL  280 (535)
Q Consensus       267 P~~e---VINSVVvARK  280 (535)
                      |...   -.-.+++++.
T Consensus       161 P~aSR~~SsE~Ylv~~g  177 (180)
T d1ej0a_         161 PDSSRARSREVYIVATG  177 (180)
T ss_dssp             CTTSCTTCCEEEEEEEE
T ss_pred             CCCcccCCceEEEEEec
Confidence            8652   2223666664

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=4.6e-05  Score=72.69  Aligned_cols=66  Identities=12%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             HHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          124 IENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       124 ~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      ...+.+.+++.|+|||+|++.+|..++ +   .+.+|++||+|+..++.-++....    .++++++.+|+.++
T Consensus        14 v~~~~~~~~d~vlEIGpG~G~LT~~Ll-~---~~~~v~aiEiD~~l~~~L~~~~~~----~~~~~ii~~D~l~~   79 (252)
T d1qyra_          14 VSAINPQKGQAMVEIGPGLAALTEPVG-E---RLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHCCCTTCCEEEECCTTTTTHHHHH-T---TCSCEEEECCCHHHHHHHHTCTTT----GGGEEEECSCGGGC
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHH-c---cCCceEEEEeccchhHHHHHHhhh----ccchhHHhhhhhhh
Confidence            344456789999999999988887654 5   468999999999999888764322    35899999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.55  E-value=9.5e-05  Score=64.06  Aligned_cols=89  Identities=12%  Similarity=0.062  Sum_probs=63.0

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.+||+|.+|.+-. .|.+   .|.+|+++|++++.++.|++    .| +-+   -...+    .......|+||++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~----~~-~~~---~~~~~----~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVE----RQ-LVD---EAGQD----LSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-SCS---EEESC----GGGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHH----hh-ccc---eeeee----cccccccccccccC
Confidence            6899999998886532 3333   68899999999998887764    34 211   11112    12335789999964


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      -.   ....++++++...++++.+++--
T Consensus        66 p~---~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 PI---QLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             CH---HHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             cH---hhhhhhhhhhhhhcccccceeec
Confidence            44   57889999999999998877543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=6.3e-05  Score=66.39  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcc
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYD  205 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FD  205 (535)
                      ..+.++++||-.| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-  +-..|..+......++|
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~~~~~~~~~~----lG-a~~~--i~~~~~~~~~~~~~g~D   93 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLA----LG-AEEA--ATYAEVPERAKAWGGLD   93 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHH----TT-CSEE--EEGGGHHHHHHHTTSEE
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhcc--cccccccccccccccccccc----cc-ccee--eehhhhhhhhhcccccc
Confidence            4678999999999 69999999999994  68999999999988777664    56 2222  22223222222335699


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +||-  .+|  +    .+....+.|+|||++++-
T Consensus        94 ~v~d--~~G--~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          94 LVLE--VRG--K----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEE--CSC--T----THHHHHTTEEEEEEEEEC
T ss_pred             cccc--ccc--h----hHHHHHHHHhcCCcEEEE
Confidence            9875  344  1    256778899999999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.47  E-value=5.7e-05  Score=72.45  Aligned_cols=89  Identities=11%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             HHHHHhhCCCCC--CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-------cCCCeEEEE
Q 041205          121 GALIENTGVAQL--KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-------IEKRMKFLT  191 (535)
Q Consensus       121 ~lL~~~~~l~~p--kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-------Ls~rI~Fi~  191 (535)
                      +.+.+.++++.+  .+|||.=+| +|.=++.+|.   .|++|++||.++....+-+..++++..       ...||++++
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaG-lG~Da~vlA~---~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~  151 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCT-TCHHHHHHHH---HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             hHHHHHhcCCCCCCCEEEECCCc-ccHHHHHHHh---CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence            455665655544  389999999 7899999998   589999999999988887776665430       124899999


Q ss_pred             ccccccccCCC-CcceEEecccc
Q 041205          192 CDIMEVKEKLG-EYDCIILAALA  213 (535)
Q Consensus       192 GDA~el~~dL~-~FDvVfiaALV  213 (535)
                      +|+.+.+.... .||+||+|-+.
T Consensus       152 ~Ds~~~L~~~~~~~DvIYlDPMF  174 (250)
T d2oyra1         152 ASSLTALTDITPRPQVVYLDPMF  174 (250)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCC
T ss_pred             CcHHHHHhccCCCCCEEEECCCC
Confidence            99988776554 59999999655

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.43  E-value=4.6e-05  Score=66.33  Aligned_cols=99  Identities=16%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             hCCCCCCEEEEEcc-CCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc------
Q 041205          127 TGVAQLKKVAFVGS-GPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE------  199 (535)
Q Consensus       127 ~~l~~pkRVLeIGS-GplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~------  199 (535)
                      ..+.++++|+-+|+ |++|+.++.+++. .....|+++|.+++..+.++++    | ..   .++..+-.+...      
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~-~g~~~V~~~~~~~~~~~~~~~~----G-a~---~~i~~~~~~~~~~~~~~~   93 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKRA----G-AD---YVINASMQDPLAEIRRIT   93 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHHH----T-CS---EEEETTTSCHHHHHHHHT
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccc-cccccccccccchhhHHHHHHc----C-Cc---eeeccCCcCHHHHHHHHh
Confidence            45689999999995 9999999988884 4447999999999998888764    5 21   122222211111      


Q ss_pred             CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ....||+||-.+..      ...++...+.++|||++++-.
T Consensus        94 ~~~~~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          94 ESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred             hcccchhhhccccc------chHHHhhhhhcccCCEEEEec
Confidence            12359988875443      567788889999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.36  E-value=6e-05  Score=68.70  Aligned_cols=101  Identities=18%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .+|.+|+-||.|-.|+.|+..|.+  -|+.|+.+|.+++.++.-.....      .++++...+-..+...+...|+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~~~l~~l~~~~~------~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcHHHHHHHHHhhc------ccceeehhhhhhHHHhhccCcEEEE
Confidence            478999999999999999999995  68999999999999876665532      3466766665555555567999999


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ++++.=...+.-+-+++.+.||||.+++=
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            98883223344566788889999988753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.35  E-value=0.00047  Score=59.48  Aligned_cols=93  Identities=16%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      ++|+.||||-+|.|-..-.++..+..+|+++|.|++..+.|++.    | .   +.-...+...  ......|+|+++.-
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~-~---~~~~~~~~~~--~~~~~~dlIila~p   71 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-I---IDEGTTSIAK--VEDFSPDFVMLSSP   71 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-S---CSEEESCGGG--GGGTCCSEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----h-c---chhhhhhhhh--hhccccccccccCC
Confidence            36999999988887554333334457999999999999888764    4 1   1111122211  12235899999766


Q ss_pred             cCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          213 AGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       213 Vgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      .   ....++++++.+.++++.+++-
T Consensus        72 ~---~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          72 V---RTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             H---HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             c---hhhhhhhhhhhccccccccccc
Confidence            5   5788899999999999876654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.28  E-value=0.00011  Score=63.87  Aligned_cols=108  Identities=18%  Similarity=0.143  Sum_probs=72.0

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEE--cccccc
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLT--CDIMEV  197 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~--GDA~el  197 (535)
                      +..+.....++++++||-+|+|++|+.++.+|+. .....|+++|.+++..+.++++    | ...-|.+..  -++.+.
T Consensus        17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~l----G-a~~~i~~~~~~~~~~~~   90 (176)
T d2fzwa2          17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKEF----G-ATECINPQDFSKPIQEV   90 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHHH----T-CSEEECGGGCSSCHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHHh----C-CcEEEeCCchhhHHHHH
Confidence            3444444567999999999999999999999994 4447899999999998888764    4 111111100  011111


Q ss_pred             cc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          198 KE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       198 ~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ..  ....+|+||-....      ...++.....+++||.+++-
T Consensus        91 ~~~~~~~g~D~vid~~G~------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          91 LIEMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHHcCCCCcEeeecCCC------HHHHHHHHHhhcCCceeEEE
Confidence            11  12469999975322      45778888899998766553

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.15  E-value=0.00026  Score=61.88  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=71.7

Q ss_pred             HHHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc---
Q 041205          120 YGALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME---  196 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e---  196 (535)
                      +..+.+...++++++||-+|+|++|.+++.+++ ...+++|+++|.+++..+.++++-...       .+...+..+   
T Consensus        17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~-~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-------~i~~~~~~~~~~   88 (176)
T d2jhfa2          17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCK-AAGAARIIGVDINKDKFAKAKEVGATE-------CVNPQDYKKPIQ   88 (176)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHH
T ss_pred             HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHH-HcCCceEEeecCcHHHHHHHHHhCCee-------EEecCCchhHHH
Confidence            344444556899999999999999999999999 455689999999999999887652211       111111111   


Q ss_pred             -cc--cCCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEEEc
Q 041205          197 -VK--EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLVRS  240 (535)
Q Consensus       197 -l~--~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVvRs  240 (535)
                       ..  ...+.+|+||-....      ...++.....+++| |++++-.
T Consensus        89 ~~~~~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          89 EVLTEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHHHHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence             11  122469999876444      35566666678776 5666644

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.02  E-value=0.00026  Score=61.49  Aligned_cols=103  Identities=16%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             HHHHHhhCCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcc-c----c
Q 041205          121 GALIENTGVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCD-I----M  195 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GD-A----~  195 (535)
                      ..+.....++++++|+-+|+|++|++++.+++ ...+..|+++|.+++..+.|++    +| ..   .++..+ -    .
T Consensus        18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~-~~g~~~Vi~~~~~~~rl~~a~~----~G-Ad---~~in~~~~~~~~~   88 (175)
T d1cdoa2          18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCH-SAGAKRIIAVDLNPDKFEKAKV----FG-AT---DFVNPNDHSEPIS   88 (175)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHH----TT-CC---EEECGGGCSSCHH
T ss_pred             HHHHHhhCCCCCCEEEEEecCCccchHHHHHH-HHhhchheeecchHHHHHHHHH----cC-Cc---EEEcCCCcchhHH
Confidence            34444456789999999999999999999988 4667799999999999988775    45 11   122111 0    0


Q ss_pred             ccc--cCCCCcceEEeccccCChhhHHHHHHHHHhhcccC-eEEEE
Q 041205          196 EVK--EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEG-GVLLV  238 (535)
Q Consensus       196 el~--~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPG-GvLVv  238 (535)
                      +..  .....+|+|+-....      ...+......+++| +++++
T Consensus        89 ~~~~~~~~~G~d~vid~~G~------~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          89 QVLSKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             HHHHHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHHhhccCCcceeeeecCC------HHHHHHHHHHhhCCCcceeE
Confidence            111  112469999875443      44456666666665 55554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00022  Score=62.15  Aligned_cols=104  Identities=10%  Similarity=0.082  Sum_probs=69.9

Q ss_pred             HHHHhhCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc-
Q 041205          122 ALIENTGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE-  199 (535)
Q Consensus       122 lL~~~~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~-  199 (535)
                      .+.+...+.++++||-.| ||++|..++.+|+.  .|++|++++.+++..+.++    +.| ...-+.....|..+... 
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~----~~G-a~~vi~~~~~~~~~~v~~   88 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLS----RLG-VEYVGDSRSVDFADEILE   88 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHH----TTC-CSEEEETTCSTHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhcc--ccccceeeecccccccccc----ccc-ccccccCCccCHHHHHHH
Confidence            344445678899999988 69999999999994  5899999998887766555    556 22111111122211111 


Q ss_pred             --CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          200 --KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       200 --dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                        ...+||+||-.  +|     ...++.+.+.|+|+|+++.-
T Consensus        89 ~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          89 LTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCEEEEEec--cc-----chHHHHHHHHhcCCCEEEEE
Confidence              12459999963  33     23678888999999999884

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.96  E-value=0.0011  Score=56.93  Aligned_cols=99  Identities=21%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh--cCCcCCCeE----EEEccccccccCCCCcce
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS--DDEIEKRMK----FLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~--lG~Ls~rI~----Fi~GDA~el~~dL~~FDv  206 (535)
                      ++|.-||+|++|...-.+...  .|..|+.+|++++.++..++.-..  .+ ......    +...|.   ...+.++|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~e~~~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLTSDI---GLAVKDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEESCH---HHHHTTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhhhhh---HhHhcCCCE
Confidence            689999999988775444332  688999999999998877764211  11 001111    122222   222357999


Q ss_pred             EEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          207 IILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       207 VfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      |++.--.   .....+++++.++++++..+++-.
T Consensus        76 iii~v~~---~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          76 ILIVVPA---IHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             EEECSCG---GGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             EEEEEch---hHHHHHHHHhhhccCCCCEEEEeC
Confidence            9996333   567899999999999999877643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0003  Score=61.22  Aligned_cols=106  Identities=8%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             HHHHHhhCCCCCCEEEEEccC-CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc
Q 041205          121 GALIENTGVAQLKKVAFVGSG-PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeIGSG-plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      ..+.....+.++++||-.|.| .+|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-|.....|..+-..
T Consensus        18 ~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~----lG-a~~vi~~~~~d~~~~v~   90 (179)
T d1qora2          18 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALK----AG-AWQVINYREEDLVERLK   90 (179)
T ss_dssp             HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HT-CSEEEETTTSCHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHh----cC-CeEEEECCCCCHHHHHH
Confidence            344444567899999999554 489999999994  78999999999999888775    45 21112211222221111


Q ss_pred             ---CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          200 ---KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       200 ---dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                         .-..+|+|+-..  +  .   ..+....+.++|+|++++-.
T Consensus        91 ~~t~g~g~d~v~d~~--g--~---~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          91 EITGGKKVRVVYDSV--G--R---DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHTTTCCEEEEEECS--C--G---GGHHHHHHTEEEEEEEEECC
T ss_pred             HHhCCCCeEEEEeCc--c--H---HHHHHHHHHHhcCCeeeecc
Confidence               123589877642  2  1   25678888999999987744

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0017  Score=58.68  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC-------------CCeEEEE
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE-------------KRMKFLT  191 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls-------------~rI~Fi~  191 (535)
                      ++|.-||+|.+|.. |.++|.   .|..|+.+|+|+++++.+++.+++.       |...             .++.+. 
T Consensus         5 kkvaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             EEEEEECcCHHHHHHHHHHHh---CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-
Confidence            69999999999877 344444   6899999999999999998876532       2110             133332 


Q ss_pred             ccccccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          192 CDIMEVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       192 GDA~el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      .|.   ...+.+.|+|+=+ .....+-|.++|.++.+.++|+.+|...+.
T Consensus        81 ~d~---~~a~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          81 TDA---ASVVHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFASNTS  126 (192)
T ss_dssp             SCH---HHHTTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred             chh---Hhhhcccceehhh-cccchhHHHHHHHHHhhhcccCceeeccCc
Confidence            222   2234567888854 333357899999999999999999988764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.83  E-value=0.00027  Score=65.09  Aligned_cols=107  Identities=20%  Similarity=0.160  Sum_probs=71.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCc--C--CCeEEEEccccc---------
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEI--E--KRMKFLTCDIME---------  196 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~L--s--~rI~Fi~GDA~e---------  196 (535)
                      -+|.+|+-||.|-.|+.|+..|.+  -|+.|+.+|++++..+.-+++..+.-.+  .  ...+-..+.+.+         
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            578999999999999999999995  6899999999999988887764332100  0  000111111111         


Q ss_pred             ---cccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          197 ---VKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       197 ---l~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                         +...+.+.|+|+..+++.-...+.-+=+++.+.||||.+++=
T Consensus       105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence               112245789999998883222333467888899999988753

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.77  E-value=0.0021  Score=64.04  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=95.5

Q ss_pred             hCCCCCCEEEEEccCCChhhHHHHHhhcC-C-----------CcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc
Q 041205          127 TGVAQLKKVAFVGSGPMPLTSIILASQHM-K-----------STHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI  194 (535)
Q Consensus       127 ~~l~~pkRVLeIGSGplPlTAI~LAk~~l-~-----------Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA  194 (535)
                      +...++.+|+|-.||++|+-.-.+ ++.. .           ...+.|+|+++.++.+|+-+.--.|.-...+.+.++|.
T Consensus       158 l~~~~~~~IlDPacGsG~fL~~a~-~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~  236 (425)
T d2okca1         158 INPQMGETVCDPACGTGGFLLTAY-DYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS  236 (425)
T ss_dssp             HCCCTTCCEEETTCTTCHHHHHHH-HHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT
T ss_pred             ccCcccceeeccccccCccHHHHH-HHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCch
Confidence            344678999999999877754333 2111 0           23599999999999999988766562224567888887


Q ss_pred             cccccCCCCcceEEeccccCCh-----------------hhHHHHHHHHHhhcccCeEEEEEcccccccccCCCCc--c-
Q 041205          195 MEVKEKLGEYDCIILAALAGNE-----------------EEKAKILGHIRKYMKEGGVLLVRSAKGARAFLYPVVE--H-  254 (535)
Q Consensus       195 ~el~~dL~~FDvVfiaALVgm~-----------------edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fLYP~Vd--p-  254 (535)
                      .+. .....||+|+..--.|..                 .....++.++.+.|+|||++++--++|.  +.-....  . 
T Consensus       237 l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~--L~~~~~~~~iR  313 (425)
T d2okca1         237 LEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV--LFEAGAGETIR  313 (425)
T ss_dssp             TTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH--HHCSTHHHHHH
T ss_pred             hhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH--hhhhhhHHHHH
Confidence            642 233469999976444320                 1134699999999999998877665441  1111100  0 


Q ss_pred             -c-cCCcEEEEEEc-CCC-----cceeeeEEEecCCCCC
Q 041205          255 -E-LFDFKVLSIFH-PTN-----DVINSVVLLQLPKDPP  285 (535)
Q Consensus       255 -d-l~GFeil~v~h-P~~-----eVINSVVvARK~~~~~  285 (535)
                       . +..+.+..++. |.+     .|.-++++.+|.++..
T Consensus       314 ~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~~~  352 (425)
T d2okca1         314 KRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQPTK  352 (425)
T ss_dssp             HHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEESSCCS
T ss_pred             HHHHHhcchhHhhcCCcccccCCCCCeEEEEEECCCCCC
Confidence             0 12344444333 533     2444588888866433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.63  E-value=0.00087  Score=59.52  Aligned_cols=110  Identities=11%  Similarity=0.008  Sum_probs=72.4

Q ss_pred             HHHHHhhCCCCCCEEEEE--ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc
Q 041205          121 GALIENTGVAQLKKVAFV--GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK  198 (535)
Q Consensus       121 ~lL~~~~~l~~pkRVLeI--GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~  198 (535)
                      ..+.....+.++.+|+-+  |+|++|..++.+|+.  -|++|+++-.+++..+...+.++++| ...-|..-..|..++.
T Consensus        18 ~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~--~Ga~vI~~v~~~~~~~~~~~~~~~lG-ad~vi~~~~~~~~~~~   94 (189)
T d1gu7a2          18 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELG-ATQVITEDQNNSREFG   94 (189)
T ss_dssp             HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHT-CSEEEEHHHHHCGGGH
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhh--cCCeEEEEEecccccchHHhhhhhcc-ccEEEeccccchhHHH
Confidence            344445567888999998  678789999999994  58999998777777777777777888 3222221111211111


Q ss_pred             c--------CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          199 E--------KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~--------dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      .        .-.++|+||-.  +|     ...+....+.|+|||++++-.
T Consensus        95 ~~v~~~~~~~g~~vdvv~D~--vg-----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          95 PTIKEWIKQSGGEAKLALNC--VG-----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHHHHHHTCCEEEEEES--SC-----HHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHhhccCCceEEEEC--CC-----cchhhhhhhhhcCCcEEEEEC
Confidence            0        12358888842  33     234577789999999998743

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.41  E-value=0.0027  Score=55.70  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=71.7

Q ss_pred             HHHHHHhhCCCCCCEEEEEccC-CChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc--cc
Q 041205          120 YGALIENTGVAQLKKVAFVGSG-PMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI--ME  196 (535)
Q Consensus       120 ~~lL~~~~~l~~pkRVLeIGSG-plPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA--~e  196 (535)
                      +..+.....++++++||-.|.| .+|..++.+|+.  .|++|++++.+++..+.+++.    | .  ..-+...|-  .+
T Consensus        18 ~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~----G-a--~~vi~~~~~~~~~   88 (182)
T d1v3va2          18 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQI----G-F--DAAFNYKTVNSLE   88 (182)
T ss_dssp             HHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHT----T-C--SEEEETTSCSCHH
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHc--cCCEEEEeCCCHHHHHHHHhh----h-h--hhhcccccccHHH
Confidence            3455555677899999998884 488999999994  689999999999887766654    5 1  111222221  11


Q ss_pred             -cc--cCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          197 -VK--EKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       197 -l~--~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                       +.  .....+|+||-.  +|     .+.++...+.|+|||.+++-
T Consensus        89 ~~~~~~~~~Gvd~v~D~--vG-----~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          89 EALKKASPDGYDCYFDN--VG-----GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHHHHCTTCEEEEEES--SC-----HHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHHHhhcCCCceeEEe--cC-----chhhhhhhhhccCCCeEEee
Confidence             11  122459998863  34     24788999999999999884

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.30  E-value=0.016  Score=48.22  Aligned_cols=92  Identities=20%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvVf  208 (535)
                      ++|+-+|+|.+|........  -.|..|+.||.|++.++.++.   +.|     +.++.||+.+...    ....+|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~--~~g~~v~vid~d~~~~~~~~~---~~~-----~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EID-----ALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HCS-----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCCcceecCChhhhhhhhh---hhh-----hhhccCcccchhhhhhcChhhhhhhc
Confidence            68999999987776553322  257899999999998876543   334     4788999975322    345688777


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ....-   .+..-+...+.+.+.+..+++
T Consensus        71 ~~t~~---d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGK---EEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSC---HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCc---HHHHHHHHHHHHHcCCceEEE
Confidence            64222   455556666777888875543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.006  Score=53.89  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             HHHHHhhCCCCC--CEEEEEc-cCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccc
Q 041205          121 GALIENTGVAQL--KKVAFVG-SGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIME  196 (535)
Q Consensus       121 ~lL~~~~~l~~p--kRVLeIG-SGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~e  196 (535)
                      ..+.....+.++  +.||--| +|++|..++.+|+.  -|+ .|++++.+++....   +...+| ...-+.....|..+
T Consensus        18 ~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~--~Ga~~vi~~~~~~e~~~~---l~~~~g-ad~vi~~~~~~~~~   91 (187)
T d1vj1a2          18 IGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHL--LGCSRVVGICGTQEKCLF---LTSELG-FDAAVNYKTGNVAE   91 (187)
T ss_dssp             HHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHH--TTCSEEEEEESSHHHHHH---HHHHSC-CSEEEETTSSCHHH
T ss_pred             HHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHH--cCCcceecccchHHHHhh---hhhccc-ceEEeeccchhHHH
Confidence            344444555666  7798888 79999999999993  355 57777776655433   233445 21112222222222


Q ss_pred             ccc--CCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          197 VKE--KLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       197 l~~--dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ...  ....+|+||-.  +|     ...++...+.|+|||++++-
T Consensus        92 ~~~~~~~~GvDvv~D~--vG-----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          92 QLREACPGGVDVYFDN--VG-----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHCTTCEEEEEES--SC-----HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhccCceEEEec--CC-----chhHHHHhhhccccccEEEe
Confidence            111  12459999843  33     24688999999999999874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.56  E-value=0.016  Score=55.60  Aligned_cols=106  Identities=9%  Similarity=0.041  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      -+.+..+|+|+||||+|.|-.. |. ..+.+.|.|+|+--+--+.- ......|  .+-++|..++..... ....+|.|
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~-a~-~~~v~~V~g~~iG~d~~e~P-~~~~~~~--~ni~~~~~~~dv~~l-~~~~~D~v  136 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYC-GG-LKNVREVKGLTKGGPGHEEP-IPMSTYG--WNLVRLQSGVDVFFI-PPERCDTL  136 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHH-HT-STTEEEEEEECCCSTTSCCC-CCCCSTT--GGGEEEECSCCTTTS-CCCCCSEE
T ss_pred             CccCCCeEEEecCCCChHHHHH-Hh-hcCCCceeEEEecCccccCC-ccccccc--cccccchhhhhHHhc-CCCcCCEE
Confidence            3578889999999998888544 44 24567889998832210000 1122223  134566655532111 22459999


Q ss_pred             Eecccc--CC----hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          208 ILAALA--GN----EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       208 fiaALV--gm----~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      +.|..-  +.    .+--.++++-+.+.|+|||-+++.
T Consensus       137 lcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         137 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            998432  11    123346778888999999999884

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.54  E-value=0.021  Score=48.65  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.|||+|.+|.+-+- |.+.  .+..|..+|.+++..+.   +.++.|     +.. ..|.    ......|+||++ 
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~---l~~~~~-----~~~-~~~~----~~v~~~Div~la-   64 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRER---LEKELG-----VET-SATL----PELHSDDVLILA-   64 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHH---HHHHTC-----CEE-ESSC----CCCCTTSEEEEC-
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCCcEEEEeCChhHHHH---hhhhcc-----ccc-cccc----ccccccceEEEe-
Confidence            58999999988776432 3332  24799999999977654   333445     232 2222    234568999985 


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEcccc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRSAKG  243 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRsa~G  243 (535)
                      ..      ...+..+.+-+++.+.+++....|
T Consensus        65 vk------P~~~~~v~~~l~~~~~~viS~~ag   90 (152)
T d1yqga2          65 VK------PQDMEAACKNIRTNGALVLSVAAG   90 (152)
T ss_dssp             SC------HHHHHHHHTTCCCTTCEEEECCTT
T ss_pred             cC------HHHHHHhHHHHhhcccEEeecccC
Confidence            32      345666666677766666655444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0031  Score=53.08  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             CEEEEEccCCChhhH-HHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTS-IILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTA-I~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      |||+.||+|.+|..- ..|++   .|..|+.++++++..+.    ....+ ..... +..--..+.......+|+||+. 
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~---~G~~V~~~~r~~~~~~~----~~~~~-~~~~~-~~~~~~~~~~~~~~~~D~iii~-   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYCS----VNLVE-TDGSI-FNESLTANDPDFLATSDLLLVT-   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEEE----EEEEC-TTSCE-EEEEEEESCHHHHHTCSEEEEC-
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCceEEEEcCHHHhhh----hcccc-CCccc-cccccccchhhhhcccceEEEe-
Confidence            699999999876542 33334   67899999999863321    11122 11111 1111111122333579999996 


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      .+.  .+-+.+++.+.+.++++..++.-
T Consensus        71 vka--~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          71 LKA--WQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             SCG--GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ecc--cchHHHHHhhccccCcccEEeec
Confidence            443  46788899999999998876654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.39  E-value=0.0063  Score=54.28  Aligned_cols=101  Identities=21%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhc-------CCcC--------CCeEEEEcccc
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSD-------DEIE--------KRMKFLTCDIM  195 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~l-------G~Ls--------~rI~Fi~GDA~  195 (535)
                      =++|.-||+|.+|..-. ++|.   .|..|+.+|+|+++++.+.+.+...       |.+.        .++.+ ..+  
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~--   77 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS--   77 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS--
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccc--
Confidence            36899999999887633 4444   6899999999999999887765421       1010        11222 111  


Q ss_pred             ccccCCCCcceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          196 EVKEKLGEYDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       196 el~~dL~~FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                        ..++.+.|+|+- +...-.+-|.++|.++-+.++|+.+|...+.
T Consensus        78 --~~~~~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS  120 (186)
T d1wdka3          78 --YGDFGNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTS  120 (186)
T ss_dssp             --STTGGGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             --cccccccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccc
Confidence              123456899986 4544468999999999999999999988764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.36  E-value=0.016  Score=51.25  Aligned_cols=78  Identities=21%  Similarity=0.337  Sum_probs=50.7

Q ss_pred             CCCEEEEEccCCChhhHHH---HHh-hcCCCcEEEEEeCChhHHHHHHHH----HhhcCCcCCCeEEEE-ccccccccCC
Q 041205          131 QLKKVAFVGSGPMPLTSII---LAS-QHMKSTHFDNIDIDETANNLARRI----VSSDDEIEKRMKFLT-CDIMEVKEKL  201 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~---LAk-~~l~Ga~VtGIDIDpeAIelAR~l----i~~lG~Ls~rI~Fi~-GDA~el~~dL  201 (535)
                      |.+||..||.|..|+|...   ++. ..+.+.+++-+|+|++.++.....    +...+   ...++.. .|.   ...+
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~---~~~~i~~~td~---~eaL   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG---ADLKFEKTMNL---DDVI   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTT---CCCEEEEESCH---HHHH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcC---CCeEEEEeCCh---hhcc
Confidence            5789999999998887433   222 123457999999999977654333    33344   3445533 232   2334


Q ss_pred             CCcceEEeccccC
Q 041205          202 GEYDCIILAALAG  214 (535)
Q Consensus       202 ~~FDvVfiaALVg  214 (535)
                      .+.|+|++...+|
T Consensus        75 ~dad~Vv~~~~~g   87 (171)
T d1obba1          75 IDADFVINTAMVG   87 (171)
T ss_dssp             TTCSEEEECCCTT
T ss_pred             cCCCeEeeecccc
Confidence            6789999887764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.34  E-value=0.027  Score=50.22  Aligned_cols=101  Identities=15%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHH------------HHHhhcCCcCCCeEEEEcccccccc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLAR------------RIVSSDDEIEKRMKFLTCDIMEVKE  199 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR------------~li~~lG~Ls~rI~Fi~GDA~el~~  199 (535)
                      |+|.-||+|-+|++ |+++|+   .|-+|+|+|+|++.++.=.            +.+.+.. ...+..+ ..|..+.  
T Consensus         1 MkI~ViGlG~vGl~~a~~la~---~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~-~~~~~~~-~~~~~~~--   73 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKKA--   73 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHHH--
T ss_pred             CEEEEECCCHhHHHHHHHHHh---CCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh-ccccccc-CCCHHHH--
Confidence            68999999999987 667777   6889999999998876533            1111111 1123333 2332221  


Q ss_pred             CCCCcceEEeccccCC-------hhhHHHHHHHHH---hhcccCeEEEEEcc
Q 041205          200 KLGEYDCIILAALAGN-------EEEKAKILGHIR---KYMKEGGVLLVRSA  241 (535)
Q Consensus       200 dL~~FDvVfiaALVgm-------~edK~~VL~eL~---rvLKPGGvLVvRsa  241 (535)
                       ....|+||+.--...       ...-..+++.+.   +..++|.++++++.
T Consensus        74 -i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST  124 (202)
T d1mv8a2          74 -VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST  124 (202)
T ss_dssp             -HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred             -HhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence             234688886532210       122344555444   45568899999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.21  E-value=0.029  Score=46.13  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc----CCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE----KLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~----dL~~FDvVf  208 (535)
                      ++++-+|+|.+|....-...  ..|..|+.||.|++.++.++    ..|     ...+.||+.+...    .....|.|+
T Consensus         1 k~~iIiG~G~~G~~la~~L~--~~g~~vvvid~d~~~~~~~~----~~~-----~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELH--RMGHEVLAVDINEEKVNAYA----SYA-----THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHH--HTTCCCEEEESCHHHHHHTT----TTC-----SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCeEEEecCcHHHHHHHH----HhC-----CcceeeecccchhhhccCCccccEEE
Confidence            46788999987776553333  26889999999999988753    334     3567799875321    234688888


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++..-   .+...++-...+.+.|...+++|..
T Consensus        70 ~~~~~---~~~~~~~~~~~~~~~~~~~iiar~~   99 (134)
T d2hmva1          70 VAIGA---NIQASTLTTLLLKELDIPNIWVKAQ   99 (134)
T ss_dssp             ECCCS---CHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EEcCc---hHHhHHHHHHHHHHcCCCcEEeecc
Confidence            75433   2455555566666777778888763

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.015  Score=56.32  Aligned_cols=60  Identities=10%  Similarity=0.067  Sum_probs=47.0

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccc
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEV  197 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el  197 (535)
                      .+..|+|||.|+|.+|..++-.  ...-+|++||+|+..++.=++.+.  +   ++++++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~--~~~~~v~~iE~D~~~~~~L~~~~~--~---~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKFE--G---SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHTT--T---SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHhcc--C---CCcEEEeCchhhc
Confidence            5778999999998888777643  122489999999999988776653  2   4799999999754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.08  E-value=0.0095  Score=53.14  Aligned_cols=100  Identities=11%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             hCCCCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCC
Q 041205          127 TGVAQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGE  203 (535)
Q Consensus       127 ~~l~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~  203 (535)
                      ....++++||--| +|..|..++.+|+.  -|++|+++-.+++-.+.++++    | ...-|.. ..+..+...  ..+.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~--~Ga~Viat~~s~~k~~~~~~l----G-a~~vi~~-~~~~~~~~~~~~~~g   98 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRVL----G-AKEVLAR-EDVMAERIRPLDKQR   98 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHHT----T-CSEEEEC-C---------CCSCC
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHH--cCCceEEecCchHHHHHHHhc----c-cceeeec-chhHHHHHHHhhccC
Confidence            4456789999999 68789999999994  699999999999988888754    4 1111211 111111111  2246


Q ss_pred             cceEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          204 YDCIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       204 FDvVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ||+||-.  +|     ...+....+.|+|||++++-..
T Consensus        99 vD~vid~--vg-----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAVDP--VG-----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEEC--ST-----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             cCEEEEc--CC-----chhHHHHHHHhCCCceEEEeec
Confidence            9987753  33     2258888889999999998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.078  Score=44.65  Aligned_cols=100  Identities=7%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceE
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCI  207 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvV  207 (535)
                      -.+|+-+|+|.+|...+-...  ..|..|+.||.|++...........     ..+.++.||+.+..    ......|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~--~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEE
Confidence            458999999976665544333  2578999999999864433333222     34789999997632    134568888


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      ++...-   ....-......+.+.|+..++++..
T Consensus        76 i~~~~~---d~~n~~~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          76 LALSDN---DADNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSSC---HHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEcccc---HHHHHHHHHHHHHhCCCCceEEEEc
Confidence            875433   3455555566777889988888753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.95  E-value=0.047  Score=44.21  Aligned_cols=72  Identities=15%  Similarity=0.328  Sum_probs=50.0

Q ss_pred             CCCCCEEEEEccCCChhhHH--HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcce
Q 041205          129 VAQLKKVAFVGSGPMPLTSI--ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI--~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDv  206 (535)
                      +...++|.|||.|-.|++++  +|..   .|.+|+|.|....  ...+++. ..|     +.+..+...+.   ..+.|+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~---~G~~VsGSD~~~~--~~~~~L~-~~G-----i~v~~g~~~~~---i~~~d~   70 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN---EGYQISGSDIADG--VVTQRLA-QAG-----AKIYIGHAEEH---IEGASV   70 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH---HTCEEEEEESCCS--HHHHHHH-HTT-----CEEEESCCGGG---GTTCSE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh---CCCEEEEEeCCCC--hhhhHHH-HCC-----CeEEECCcccc---CCCCCE
Confidence            46789999999999999985  2323   6899999999753  2233343 456     46666665432   356899


Q ss_pred             EEeccccC
Q 041205          207 IILAALAG  214 (535)
Q Consensus       207 VfiaALVg  214 (535)
                      |+..+.+.
T Consensus        71 vV~S~AI~   78 (96)
T d1p3da1          71 VVVSSAIK   78 (96)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCcC
Confidence            98887774

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.04  Score=44.37  Aligned_cols=70  Identities=16%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEeccc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAAL  212 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaAL  212 (535)
                      +||.|||-|-.|+|++-..- +..|..|+|.|+.+...-  ++ +++.|     |++..+.-   ...+.+.|+|+..+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t--~~-L~~~G-----i~i~~gh~---~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERT--AY-LRKLG-----IPIFVPHS---ADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHH--HH-HHHTT-----CCEESSCC---TTSCCCCSEEEECTT
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhH--HH-HHHCC-----CeEEeeec---ccccCCCCEEEEecC
Confidence            69999999999999862211 137999999999974322  22 66777     34544432   223456899988877


Q ss_pred             cC
Q 041205          213 AG  214 (535)
Q Consensus       213 Vg  214 (535)
                      +.
T Consensus        70 I~   71 (89)
T d1j6ua1          70 VR   71 (89)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.024  Score=57.90  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=90.4

Q ss_pred             HhhCCCCCCEEEEEccCCChhhHHHHHhhc---CC--------------CcEEEEEeCChhHHHHHHHHHhhcCCcCC--
Q 041205          125 ENTGVAQLKKVAFVGSGPMPLTSIILASQH---MK--------------STHFDNIDIDETANNLARRIVSSDDEIEK--  185 (535)
Q Consensus       125 ~~~~l~~pkRVLeIGSGplPlTAI~LAk~~---l~--------------Ga~VtGIDIDpeAIelAR~li~~lG~Ls~--  185 (535)
                      .++...++.+|+|-.||++|+-.-.+ ++.   ..              ...+.|+|+++.+..+|+-+.--.| ...  
T Consensus       158 ~ll~~~~~~~i~DPacGsG~fL~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~-~~~~i  235 (524)
T d2ar0a1         158 HLLKPQPREVVQDPAAGTAGFLIEAD-RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL  235 (524)
T ss_dssp             HHHCCCTTCCEEETTCTTTHHHHHHH-HHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBG
T ss_pred             hcccCccchhhcchhhhcchhhHHHH-HHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc-ccccc
Confidence            33444678899999999877753222 211   10              1258999999999999998765545 222  


Q ss_pred             --CeEEEEccccccc-cCCCCcceEEeccccCC--------------hhhHHHHHHHHHhhcccCeEEEEEccccccccc
Q 041205          186 --RMKFLTCDIMEVK-EKLGEYDCIILAALAGN--------------EEEKAKILGHIRKYMKEGGVLLVRSAKGARAFL  248 (535)
Q Consensus       186 --rI~Fi~GDA~el~-~dL~~FDvVfiaALVgm--------------~edK~~VL~eL~rvLKPGGvLVvRsa~GlR~fL  248 (535)
                        .-.+..++..... .....||+|+..--.|.              ......++.++.+.|+|||++++--++|.   +
T Consensus       236 ~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~---L  312 (524)
T d2ar0a1         236 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV---L  312 (524)
T ss_dssp             GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---H
T ss_pred             cccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHH---h
Confidence              1234444443211 13356999997643332              01134599999999999999888766552   1


Q ss_pred             CC-CCc--c--c-cCCcEEEEEEc-CCC-----cceeeeEEEecCCC
Q 041205          249 YP-VVE--H--E-LFDFKVLSIFH-PTN-----DVINSVVLLQLPKD  283 (535)
Q Consensus       249 YP-~Vd--p--d-l~GFeil~v~h-P~~-----eVINSVVvARK~~~  283 (535)
                      +- ...  .  . +..+.+..++. |.+     .|..+++|.+|.++
T Consensus       313 f~~~~~~~iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~  359 (524)
T d2ar0a1         313 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV  359 (524)
T ss_dssp             HCCTHHHHHHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred             hhhhhhHHHHHHHHHcCCceEEEECCCCcCCCCCCCeEEEEEECCCC
Confidence            11 001  1  1 12344444332 533     35556888888653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.44  E-value=0.15  Score=43.89  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      ...+||.-||+|-+|.+..+.....-...+++-+|++++.. ..|..+-.... ......+..+|-.    ++.+.|+|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~----~~~~adivv   77 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYS----DCKDADLVV   77 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGG----GGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc-ccCCceEeeccHH----HhccccEEE
Confidence            34679999999998888544333212246899999999743 23433433222 2334566677753    346789999


Q ss_pred             ecccc
Q 041205          209 LAALA  213 (535)
Q Consensus       209 iaALV  213 (535)
                      +.+..
T Consensus        78 itag~   82 (146)
T d1ez4a1          78 ITAGA   82 (146)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            87655

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.07  Score=47.58  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh-------------------HHHHHHHHHhhcCCcCCCeEE
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET-------------------ANNLARRIVSSDDEIEKRMKF  189 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe-------------------AIelAR~li~~lG~Ls~rI~F  189 (535)
                      ...++||+-||+||.|+++-+.+.  ..|-+|+-+|.++.                   .++.-.+.+++.|     |+|
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la--~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g-----V~i  112 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG-----VTL  112 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT-----CEE
T ss_pred             CCCCcEEEEECccHHHHHHHHHHH--hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC-----eEE
Confidence            367899999999999999888876  37889999998762                   2333344455555     566


Q ss_pred             EEccccccccCCCCcceEEecccc
Q 041205          190 LTCDIMEVKEKLGEYDCIILAALA  213 (535)
Q Consensus       190 i~GDA~el~~dL~~FDvVfiaALV  213 (535)
                      ..+.-.+ ......||.|+++.-.
T Consensus       113 ~l~~~Vt-~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         113 KLNHTVT-ADQLQAFDETILASGI  135 (179)
T ss_dssp             EESCCCC-SSSSCCSSEEEECCCE
T ss_pred             EeCCEEc-ccccccceeEEEeecC
Confidence            5543322 1223569999997655

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.96  E-value=0.3  Score=41.40  Aligned_cols=103  Identities=18%  Similarity=0.274  Sum_probs=61.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.-||+|-+|.+..+.....-...+++-+|++++... .+..+..... +..+..+..+|..    ++.+.|+|++.+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~~~~~~~~~~~----~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDYA----DLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCGG----GGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccccccccCCcHH----HhcCCCEEEEec
Confidence            589999999888885443221223468999999987644 3333333333 3456677776643    346789999887


Q ss_pred             cc----CC-hhh----HHHHHHHHHhh---cccCeEEEEEc
Q 041205          212 LA----GN-EEE----KAKILGHIRKY---MKEGGVLLVRS  240 (535)
Q Consensus       212 LV----gm-~ed----K~~VL~eL~rv---LKPGGvLVvRs  240 (535)
                      ..    |+ ..+    -..++.++.+.   ..|++++++-+
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            66    33 112    12333333332   35778777643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.88  E-value=0.018  Score=50.74  Aligned_cols=96  Identities=11%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             CCCCEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccc-ccccc--CCCCcc
Q 041205          130 AQLKKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDI-MEVKE--KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA-~el~~--dL~~FD  205 (535)
                      .++..||--| +|..|..++.||+.  -|++|+++..+++-.+.+++    +| . +.+ +...|. .+...  .-+.+|
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~--~Ga~Viat~~s~~k~~~~~~----lG-a-d~v-i~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQ----LG-A-SEV-ISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHH----HT-C-SEE-EEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHH--cCCceEEEecCHHHHHHHHh----hc-c-cce-EeccchhchhhhcccCCCce
Confidence            4566788777 78899999999994  68999999999888777665    45 2 111 211221 11111  113599


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +|+-.  +|     ...+....+.|+|||++++-..
T Consensus        93 ~vid~--vg-----g~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          93 GAVDP--VG-----GKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             EEEES--CC-----THHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEec--Cc-----HHHHHHHHHHhccCceEEEeec
Confidence            88753  33     2467889999999999988553

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.52  E-value=0.12  Score=41.73  Aligned_cols=92  Identities=8%  Similarity=0.008  Sum_probs=58.7

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -.+++||-||.|..|...+....  ..|++|+.++.+..--  -..++ ..    .+++++.....  ..++.++|+|+.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll--~~ga~v~v~~~~~~~~--~~~~~-~~----~~i~~~~~~~~--~~dl~~~~lv~~   78 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLL--EAGARLTVNALTFIPQ--FTVWA-NE----GMLTLVEGPFD--ETLLDSCWLAIA   78 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHH--HTTBEEEEEESSCCHH--HHHHH-TT----TSCEEEESSCC--GGGGTTCSEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEeccCChH--HHHHH-hc----CCceeeccCCC--HHHhCCCcEEee
Confidence            45899999999987776655544  3689998887665421  11122 11    36788877654  345577999998


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +..-      ..+=.++++..++-|+++-
T Consensus        79 at~d------~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          79 ATDD------DTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             CCSC------HHHHHHHHHHHHHTTCEEE
T ss_pred             cCCC------HHHHHHHHHHHHHcCCEEE
Confidence            7443      2333455556666677753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.46  E-value=0.047  Score=46.77  Aligned_cols=91  Identities=21%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             CEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.+||.|.+|..-. .|++   .|-.|+++|++++..+..++    .|     .. .+.+..++.   ...|+||+. 
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~---~G~~V~~~d~~~~~~~~~~~----~~-----~~-~~~~~~e~~---~~~d~ii~~-   63 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVSDRNPEAIADVIA----AG-----AE-TASTAKAIA---EQCDVIITM-   63 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-----CE-ECSSHHHHH---HHCSEEEEC-
T ss_pred             CEEEEEehhHHHHHHHHHHHH---CCCeEEEEeCCcchhHHHHH----hh-----hh-hcccHHHHH---hCCCeEEEE-
Confidence            5899999999988743 2444   57899999999998766554    23     11 123333322   357999984 


Q ss_pred             ccCChhhHHHHH---HHHHhhcccCeEEEEEcc
Q 041205          212 LAGNEEEKAKIL---GHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       212 LVgm~edK~~VL---~eL~rvLKPGGvLVvRsa  241 (535)
                      +.. .+.-..++   ..+...++||.+++-.+.
T Consensus        64 v~~-~~~v~~v~~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          64 LPN-SPHVKEVALGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             CSS-HHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             cCC-HHHHHHHHhCCcchhhccCCCCEEEECCC
Confidence            221 13444555   457888899888776543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.40  E-value=0.3  Score=41.80  Aligned_cols=106  Identities=15%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhH-HHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETA-NNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeA-IelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +.+.||.-||+|-+|.+..+.....-...+++-+|++++. -..|..+-.........+.+..+|..    ++.+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~----~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD----DCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG----GTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH----HhccceeEE
Confidence            4678999999998887755444322234589999999875 33444444333312345666666643    456789999


Q ss_pred             eccccC----C-----h----hhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAG----N-----E----EEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVg----m-----~----edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +.+...    +     .    +-...+...+.++ .|+|++++-+
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvt  123 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT  123 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEec
Confidence            876652    2     1    1123344455544 5778777743

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.39  E-value=0.086  Score=45.68  Aligned_cols=99  Identities=13%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCEEEEEccCCChhhHH-HHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ...|-+||.|.+|..-. .|++   .|..|+++|++++.++...+.-.+..    .. .-...+.++.......|.|++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~---~G~~V~v~dr~~~~~~~l~~~~~~~~----~~-~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLANEAKGT----KV-LGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHTTTTTS----SC-EECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHhccccc----cc-cchhhhhhhhhhhcccceEEEe
Confidence            35799999999887622 2333   57899999999998875544322211    11 1111222222233457888774


Q ss_pred             cccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          211 ALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       211 ALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..-+  +.-..++..+...++||.+++--+
T Consensus        74 ~~~~--~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          74 VKAG--QAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             SCTT--HHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             cCch--HHHHHHHHHHHhccccCcEEEecC
Confidence            3322  455678899999999998776544

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.21  E-value=0.022  Score=53.93  Aligned_cols=136  Identities=14%  Similarity=0.099  Sum_probs=86.4

Q ss_pred             cccCccchhhHHhHHHH-HHHHHHhhCCCCCCEEEEE--ccCCChhhHHHHHhhcCCC----------------------
Q 041205          103 LNRFPYYENYVKLAKLE-YGALIENTGVAQLKKVAFV--GSGPMPLTSIILASQHMKS----------------------  157 (535)
Q Consensus       103 L~~FpYy~NYv~LirlE-~~lL~~~~~l~~pkRVLeI--GSGplPlTAI~LAk~~l~G----------------------  157 (535)
                      |.+-+|+.-+-.-...| +.......+-..+..++|=  |||++++=+-++|....||                      
T Consensus        21 L~~~~~~~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~  100 (249)
T d1o9ga_          21 LHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLS  100 (249)
T ss_dssp             SCCBTTBCCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTS
T ss_pred             cccCCCCCCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHH
Confidence            33445554433223333 3333333333556667774  6666666666665432221                      


Q ss_pred             --------------cEEEEEeCChhHHHHHH---HHHhhcCCcCCCeEEEEcccccccc-----CCCCcceEEeccccCC
Q 041205          158 --------------THFDNIDIDETANNLAR---RIVSSDDEIEKRMKFLTCDIMEVKE-----KLGEYDCIILAALAGN  215 (535)
Q Consensus       158 --------------a~VtGIDIDpeAIelAR---~li~~lG~Ls~rI~Fi~GDA~el~~-----dL~~FDvVfiaALVgm  215 (535)
                                    ..+.|.|+|+++++.|+   .+++..| +++.|.|.++|+.+...     ....+++|+..=-.|-
T Consensus       101 ~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Ag-l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGE  179 (249)
T d1o9ga_         101 PAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEG-GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE  179 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT-SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred             HHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcC-CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccc
Confidence                          35789999999999994   6899999 89999999999865332     2245788887644332


Q ss_pred             ---------hhhHHHHHHHHHhhcccCeEEEEE
Q 041205          216 ---------EEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       216 ---------~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                               .+.+..++..+.+++....++++-
T Consensus       180 Rl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         180 RTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             SSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cccccccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence                     245778888888888766666663

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.28  Score=42.40  Aligned_cols=78  Identities=13%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             CEEEEEccCCChhhHHHH--Hhh--cCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIIL--ASQ--HMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~L--Ak~--~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      +||..||.|..|.+....  +..  ..+..+++=+|+|++..+.+..+....-....++.. ..|-   ...+.+-|+|+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~---~~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTF---EGAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSH---HHHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCc---ccccCCCCEEE
Confidence            589999999877555432  221  134679999999999988777665553212223332 2221   23346789999


Q ss_pred             eccccC
Q 041205          209 LAALAG  214 (535)
Q Consensus       209 iaALVg  214 (535)
                      +.+.++
T Consensus        77 ita~~~   82 (162)
T d1up7a1          77 FQFRPG   82 (162)
T ss_dssp             ECCCTT
T ss_pred             EecccC
Confidence            988774

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.91  E-value=0.32  Score=41.74  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.-||+|-+|.|..+.....--..+++-+|++++.. ..+..+......+...+.+..+|-.    ++.+-|+|++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~----~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA----ALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG----GGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH----HhccccEEEEec
Confidence            68999999988888666333112245899999999864 3333343332213345666677743    346789999875


Q ss_pred             cc--------CC-----hhhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          212 LA--------GN-----EEEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       212 LV--------gm-----~edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      .+        ++     ...=..++.++.+.+   .|+|++++-+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            53        11     111235555555444   5788877754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.82  E-value=0.28  Score=42.20  Aligned_cols=94  Identities=10%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEE-eCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNI-DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI-DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      .||..||||.+|-.-+-... ..++.+|++| |.|++.   ++.+.++.+ +.....+ ..|..++..+ .+.|+|+++.
T Consensus         2 iki~iIG~G~~g~~~~~~l~-~~~~~~i~ai~d~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~ll~~-~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIH-LAPNATISGVASRSLEK---AKAFATANN-YPESTKI-HGSYESLLED-PEIDALYVPL   74 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HCTTEEEEEEECSSHHH---HHHHHHHTT-CCTTCEE-ESSHHHHHHC-TTCCEEEECC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hCCCCEEEEEEeCCccc---cccchhccc-cccceee-cCcHHHhhhc-cccceeeecc
Confidence            48999999987755333333 3578999986 888764   455556666 4444444 4566665543 4699999875


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      --      ..-++.+...|+.|--+++-
T Consensus        75 p~------~~h~~~~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          75 PT------SLHVEWAIKAAEKGKHILLE   96 (184)
T ss_dssp             CG------GGHHHHHHHHHTTTCEEEEC
T ss_pred             cc------hhhcchhhhhhhccceeecc
Confidence            43      22244555667777666654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.75  E-value=0.25  Score=43.44  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCCEEEEEccCCChhhHHHH--Hhhc--CCCcEEEEEeCChhHHHHHHH----HHhhcCCcCCCeEEE-EccccccccCC
Q 041205          131 QLKKVAFVGSGPMPLTSIIL--ASQH--MKSTHFDNIDIDETANNLARR----IVSSDDEIEKRMKFL-TCDIMEVKEKL  201 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~L--Ak~~--l~Ga~VtGIDIDpeAIelAR~----li~~lG~Ls~rI~Fi-~GDA~el~~dL  201 (535)
                      +..+|..||.|..+++.+..  ..+.  +.+.+++-+|+|++.++..-.    .....+ .  ..++. +.|-.+   .+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~d~~e---al   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA-P--DIEFAATTDPEE---AF   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC-T--TSEEEEESCHHH---HH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhC-C--CcceEecCChhh---cc
Confidence            35689999999876553322  1211  234689999999998764333    344445 2  33333 344332   33


Q ss_pred             CCcceEEeccccC
Q 041205          202 GEYDCIILAALAG  214 (535)
Q Consensus       202 ~~FDvVfiaALVg  214 (535)
                      .+.|+|++.+.++
T Consensus        76 ~~AD~Vvitag~~   88 (167)
T d1u8xx1          76 TDVDFVMAHIRVG   88 (167)
T ss_dssp             SSCSEEEECCCTT
T ss_pred             CCCCEEEECCCcC
Confidence            5789999988773

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=92.60  E-value=0.53  Score=44.74  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCC-cCCCeEEEEccccc-cccCC--CCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDE-IEKRMKFLTCDIME-VKEKL--GEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~-Ls~rI~Fi~GDA~e-l~~dL--~~FD  205 (535)
                      ...+.|+.+||| +-..+..+..  .++.++.-||. |+.++.-++++.+.|. ...+..++..|..+ +...+  .+||
T Consensus        88 ~g~~qvV~LGaG-lDTr~~Rl~~--~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d  163 (297)
T d2uyoa1          88 DGIRQFVILASG-LDSRAYRLDW--PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFD  163 (297)
T ss_dssp             TTCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred             hCCCeEEEeCcc-cCChhhhcCC--CcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCC
Confidence            456788899999 7777766632  46778877773 8999999999888762 23566778777653 11111  2233


Q ss_pred             ----eEEec-cccC-C-hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          206 ----CIILA-ALAG-N-EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       206 ----vVfia-ALVg-m-~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                          .+|+. ++.. + .++-..+|+.+.....||+.|++..
T Consensus       164 ~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         164 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                44544 3332 2 6788899999999999999999976

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.58  E-value=0.039  Score=47.26  Aligned_cols=83  Identities=13%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.+||||.+|.+-+. |.   -.+.+|+..|.+++..+   ++.++.| .  .+   ..|..++.   ...|+||++ 
T Consensus         1 MkIg~IG~G~mG~al~~~l~---~~~~~i~v~~r~~~~~~---~l~~~~g-~--~~---~~~~~~~~---~~~dvIila-   64 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLK---QTPHELIISGSSLERSK---EIAEQLA-L--PY---AMSHQDLI---DQVDLVILG-   64 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TSSCEEEEECSSHHHHH---HHHHHHT-C--CB---CSSHHHHH---HTCSEEEEC-
T ss_pred             CEEEEEeccHHHHHHHHHHH---hCCCeEEEEcChHHhHH---hhccccc-e--ee---echhhhhh---hccceeeee-
Confidence            58999999988765322 22   24678999999987654   4444556 2  11   12322222   358999985 


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEE
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLL  237 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLV  237 (535)
                      ..      ...++++.+.++++..++
T Consensus        65 vk------p~~~~~vl~~l~~~~~ii   84 (152)
T d2ahra2          65 IK------PQLFETVLKPLHFKQPII   84 (152)
T ss_dssp             SC------GGGHHHHHTTSCCCSCEE
T ss_pred             cc------hHhHHHHhhhcccceeEe
Confidence            33      234566667788877665

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.39  E-value=0.16  Score=43.54  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|-+||+|.+|..   ||+++ -.|..|+++|++++..+...+.-.... ....... ..+..++.......+.++...
T Consensus         2 MkIGvIGlG~MG~~---ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGAN---LALNIAEKGFKVAVFNRTYSKSEEFMKANASAP-FAGNLKA-FETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHH---HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTST-TGGGEEE-CSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHH---HHHHHHHCCCeEEEEECCHHHHHHHHHcCCccc-cccchhh-hhhhhHHHHhcccceEEEEee
Confidence            68999999988766   33322 257899999999998766555433222 1122221 122222233333445555432


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..+  ..-..++..+...+++|.+++--+
T Consensus        77 ~~~--~~~~~~~~~~~~~~~~~~iii~~s  103 (178)
T d1pgja2          77 QAG--AATDSTIEQLKKVFEKGDILVDTG  103 (178)
T ss_dssp             CCS--HHHHHHHHHHHHHCCTTCEEEECC
T ss_pred             cCc--chhhhhhhhhhhhccccceecccC
Confidence            222  345677889999999998886644

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.05  E-value=0.37  Score=39.32  Aligned_cols=92  Identities=10%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----cCCCCcceEE
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----EKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----~dL~~FDvVf  208 (535)
                      ++|+-+|+|..|   ..+++ .+.+..|+.||.|++..+..+    ..|     +.++.||+.+..    ......+.|+
T Consensus         1 kHivI~G~g~~g---~~l~~-~L~~~~i~vi~~d~~~~~~~~----~~~-----~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSEST---LECLR-ELRGSEVFVLAEDENVRKKVL----RSG-----ANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHH---HHHHH-TSCGGGEEEEESCTTHHHHHH----HTT-----CEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHH---HHHHH-HHcCCCCEEEEcchHHHHHHH----hcC-----ccccccccCCHHHHHHhhhhcCcEEE
Confidence            468889998543   33455 356788999999999876553    335     588999987522    1345688888


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      +...-   ....-.+-...+.+.|...++++.
T Consensus        68 ~~~~~---d~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          68 VNLES---DSETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             ECCSS---HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             Eeccc---hhhhHHHHHHHHHHCCCceEEEEE
Confidence            75433   455566667778899998888875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.25  Score=43.48  Aligned_cols=93  Identities=17%  Similarity=0.214  Sum_probs=61.8

Q ss_pred             CCCEEEEE-ccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCC--CCcceE
Q 041205          131 QLKKVAFV-GSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKL--GEYDCI  207 (535)
Q Consensus       131 ~pkRVLeI-GSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL--~~FDvV  207 (535)
                      ++.+||-. |||.+|..++.+|+.  -|++|+++..+++-.+.+++    +| . +  .++.-+-.+....+  ..+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~--~Ga~Via~~~~~~k~~~~~~----lG-a-d--~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHK--LGYQVVAVSGRESTHEYLKS----LG-A-S--RVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHH----HT-E-E--EEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHH--cCCCeEEEecchhHHHHHHh----hc-c-c--cccccccHHHHHHHHhhcCCee
Confidence            33455533 678899999999994  69999999999999777664    45 1 1  12222222222222  347877


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      + +. ++     ...+....+.|++||++++-.
T Consensus       101 v-D~-Vg-----g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         101 I-DT-VG-----DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             E-ES-SC-----HHHHHHHHHTEEEEEEEEECC
T ss_pred             E-EE-cc-----hHHHHHHHHHhccccceEeec
Confidence            5 43 43     246889999999999998854

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.73  E-value=0.17  Score=44.24  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             CEEEEEccCCChhhHHH--HHhh-c-CCCcEEEEEeCChhH--HHHHH----HHHhhcCCcCCCeEEEEccccccccCCC
Q 041205          133 KKVAFVGSGPMPLTSII--LASQ-H-MKSTHFDNIDIDETA--NNLAR----RIVSSDDEIEKRMKFLTCDIMEVKEKLG  202 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~--LAk~-~-l~Ga~VtGIDIDpeA--IelAR----~li~~lG~Ls~rI~Fi~GDA~el~~dL~  202 (535)
                      +||..||.|..+++...  ++.. . +...+++=+|++++.  .+...    ..+...+   .++++....  +....+.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~---~~~~~~~~t--d~~~al~   76 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAG---VPIEIHLTL--DRRRALD   76 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT---CCCEEEEES--CHHHHHT
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcC---CCceeeecC--CchhhcC
Confidence            58999999987765332  2221 1 224699999999865  22222    2233444   234443221  1223346


Q ss_pred             CcceEEeccccC
Q 041205          203 EYDCIILAALAG  214 (535)
Q Consensus       203 ~FDvVfiaALVg  214 (535)
                      +.|+|++.+.++
T Consensus        77 gaDvVv~ta~~~   88 (169)
T d1s6ya1          77 GADFVTTQFRVG   88 (169)
T ss_dssp             TCSEEEECCCTT
T ss_pred             CCCEEEEccccC
Confidence            789999988874

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=91.58  E-value=0.56  Score=39.43  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH-HHHhhcCCcCCCeEEE-EccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR-RIVSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR-~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfia  210 (535)
                      +||.-||.|.+|.+............+++-+|++++..+.-. .+.........+.++. ++|-    ..+.+.|+|++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~----~~~~dadvvvit   76 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY----ADTANSDIVIIT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH----HHhcCCeEEEEE
Confidence            589999999988884443332222468999999998654332 2222111012345554 3442    234678999988


Q ss_pred             ccc
Q 041205          211 ALA  213 (535)
Q Consensus       211 ALV  213 (535)
                      +.+
T Consensus        77 ag~   79 (142)
T d1guza1          77 AGL   79 (142)
T ss_dssp             CSC
T ss_pred             Eec
Confidence            764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.37  Score=44.06  Aligned_cols=104  Identities=18%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             CCEEEEE--ccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----------
Q 041205          132 LKKVAFV--GSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----------  198 (535)
Q Consensus       132 pkRVLeI--GSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----------  198 (535)
                      ++||+-|  |++-+|+. +..||+.  .|++|+..+++++..+.+.+.++..|   .++.++.+|+.+..          
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~--~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRL--FSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHH--SSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHH
Confidence            7899888  33223432 3445552  58899999999999999888888877   47899999997633          


Q ss_pred             cCCCCcceEEeccccCC-----hhhHH--------------HHHHHHHhhcccCeEEEEEc
Q 041205          199 EKLGEYDCIILAALAGN-----EEEKA--------------KILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       199 ~dL~~FDvVfiaALVgm-----~edK~--------------~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ...+..|+++..|.+..     .....              .+.+.+.+.|+++|.++.-+
T Consensus        77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            13357999997766521     11111              34566788899999877655

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.48  Score=38.32  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC--------ChhHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI--------DETANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI--------DpeAIelAR~li~~lG  181 (535)
                      .-|+||+-||.|+.|+-......+  .|.+|+-++.        |+++.+...+.+++.|
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~G   76 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG   76 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHS
T ss_pred             hCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHHCC
Confidence            457999999999877765554442  5899999997        5667777788888877

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=90.61  E-value=0.32  Score=43.69  Aligned_cols=99  Identities=10%  Similarity=0.134  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEE-EeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDN-IDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtG-IDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .++-||..||||.+|..-..-+-...++.+|++ +|++++..+   ...++.| +...-.+...|..++.. ..+.|+|+
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~---~~~~~~~-i~~~~~~~~~d~~ell~-~~~iD~V~  105 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAK---IVAAEYG-VDPRKIYDYSNFDKIAK-DPKIDAVY  105 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHH---HHHHHTT-CCGGGEECSSSGGGGGG-CTTCCEEE
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHH---HHHHhhc-cccccccccCchhhhcc-cccceeee
Confidence            345799999999655432222212356888885 499987754   4455556 33222233456555543 35799999


Q ss_pred             eccccCChhhHHHHHHHHHhhcccCeEEEEE
Q 041205          209 LAALAGNEEEKAKILGHIRKYMKEGGVLLVR  239 (535)
Q Consensus       209 iaALVgm~edK~~VL~eL~rvLKPGGvLVvR  239 (535)
                      ++....      .-.+.+.+.|+-|=-+++-
T Consensus       106 I~tp~~------~H~~~~~~al~~gk~v~~E  130 (221)
T d1h6da1         106 IILPNS------LHAEFAIRAFKAGKHVMCE  130 (221)
T ss_dssp             ECSCGG------GHHHHHHHHHHTTCEEEEC
T ss_pred             eccchh------hhhhHHHHhhhcchhhhcC
Confidence            975542      1123444556666566554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.53  E-value=0.42  Score=41.27  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             hhCCCCCCEEEEEccCCChhhHHHHHhhcCCCc-EEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCc
Q 041205          126 NTGVAQLKKVAFVGSGPMPLTSIILASQHMKST-HFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEY  204 (535)
Q Consensus       126 ~~~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga-~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~F  204 (535)
                      .++-...++||.||.|.+|........  ..|. +|+-+-.+.+   .|.++.+..|.     ..  .+..++...+..|
T Consensus        18 ~~~~l~~~~ilviGaG~~g~~v~~~L~--~~g~~~i~v~nRt~~---ka~~l~~~~~~-----~~--~~~~~~~~~l~~~   85 (159)
T d1gpja2          18 ELGSLHDKTVLVVGAGEMGKTVAKSLV--DRGVRAVLVANRTYE---RAVELARDLGG-----EA--VRFDELVDHLARS   85 (159)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHHH--HHCCSEEEEECSSHH---HHHHHHHHHTC-----EE--CCGGGHHHHHHTC
T ss_pred             HhCCcccCeEEEECCCHHHHHHHHHHH--hcCCcEEEEEcCcHH---HHHHHHHhhhc-----cc--ccchhHHHHhccC
Confidence            333357899999999976654333222  1354 6888888844   34555555551     12  2233444455689


Q ss_pred             ceEEeccccCC-hhhHHHHHHHHHhhccc-CeEEEEEc
Q 041205          205 DCIILAALAGN-EEEKAKILGHIRKYMKE-GGVLLVRS  240 (535)
Q Consensus       205 DvVfiaALVgm-~edK~~VL~eL~rvLKP-GGvLVvRs  240 (535)
                      |+||.+...+. .-.+. .++...+.-+. ...++++-
T Consensus        86 Divi~atss~~~ii~~~-~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          86 DVVVSATAAPHPVIHVD-DVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             SEEEECCSSSSCCBCHH-HHHHHHHHCSSCCCEEEEEC
T ss_pred             CEEEEecCCCCccccHh-hhHHHHHhcccCCCeEEEee
Confidence            99998754432 23343 33333332233 34677764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.51  E-value=1.3  Score=37.64  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChh---HHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDET---ANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpe---AIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .||.-|| +|.+|.+.-+....-....+++-+|++..   +-..|..+..... +..++.+..+|-.    ++.+.|+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~----~~~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYE----DTAGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGG----GGTTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHH----HhhhcCEEE
Confidence            4899999 79999887665542223457999998632   3345555555444 4456777777643    346789999


Q ss_pred             ecccc----CC-hhh----HHHHHHHHHhh---cccCeEEEEE
Q 041205          209 LAALA----GN-EEE----KAKILGHIRKY---MKEGGVLLVR  239 (535)
Q Consensus       209 iaALV----gm-~ed----K~~VL~eL~rv---LKPGGvLVvR  239 (535)
                      +.+..    || ..+    =..++.++.+.   ..|+|++++-
T Consensus        76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv  118 (142)
T d1o6za1          76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT  118 (142)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC
T ss_pred             EecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            87765    23 111    13444444433   3567877764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.37  Score=40.40  Aligned_cols=45  Identities=13%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEE--eCChhHHHHHHHH
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNI--DIDETANNLARRI  176 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGI--DIDpeAIelAR~l  176 (535)
                      -.+++||-||+|++|+..+...-  -.|++|+-|  |++++....+.+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll--~~GA~VtVvap~~~~~l~~~~~~~   57 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLM--PTGCKLTLVSPDLHKSIIPKFGKF   57 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHG--GGTCEEEEEEEEECTTHHHHHCGG
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCCCHHHHHHHHhc
Confidence            46899999999988887766654  358888888  7788887776654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.04  E-value=0.37  Score=41.00  Aligned_cols=90  Identities=17%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             CEEEEEccCCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      ++|.+||.|-+|.. +..|++   .|-.|.++|++++..+....    .|.      ..+.+..+.   ....|+|++.-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~---~g~~v~~~d~~~~~~~~~~~----~~~------~~~~~~~e~---~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK---AGYLLNVFDLVQSAVDGLVA----AGA------SAARSARDA---VQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHH----TTC------EECSSHHHH---HTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHH---CCCeEEEEECchhhhhhhhh----hhc------cccchhhhh---ccccCeeeecc
Confidence            47999999999775 233444   57899999999988765543    341      112233222   24578888742


Q ss_pred             ccCChhhHHHHHHH---HHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKILGH---IRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL~e---L~rvLKPGGvLVvRs  240 (535)
                      ..  ...-..++..   +...++||.+++--+
T Consensus        66 ~~--~~~~~~v~~~~~~~~~~l~~g~iiid~s   95 (162)
T d3cuma2          66 PA--SQHVEGLYLDDDGLLAHIAPGTLVLECS   95 (162)
T ss_dssp             SC--HHHHHHHHHSTTCHHHHSCTTCEEEECS
T ss_pred             cc--hhhHHHHHhccccccccCCCCCEEEECC
Confidence            22  1233444433   566788887765433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.86  E-value=1.9  Score=37.36  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=65.6

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      ..+|.-||+|.+|.|..++........+++-+|++++.. ..|..+...............+|.    .+..+.|+|++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~----~~~~~adivvit   94 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY----NVSANSKLVIIT   94 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG----GGGTTEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch----hhhccccEEEEe
Confidence            468999999999999877655222245799999997643 344455443321223444444553    234678999987


Q ss_pred             cccC----C-----hhhHHHHHHHHHhh---cccCeEEEEEc
Q 041205          211 ALAG----N-----EEEKAKILGHIRKY---MKEGGVLLVRS  240 (535)
Q Consensus       211 ALVg----m-----~edK~~VL~eL~rv---LKPGGvLVvRs  240 (535)
                      +...    +     ...-..++.++.+.   ..|+|++++-+
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            7652    2     24455666666554   35888887754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.57  E-value=0.65  Score=39.41  Aligned_cols=103  Identities=21%  Similarity=0.253  Sum_probs=57.0

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      .||.-||+|-+|.+..+.........+++-+|++++.. ..+..+..... +.....+..+|-    .++.+-|+|++.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~~~~~~----~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGDY----SDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--CG----GGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc-cCCCeeEeeCcH----HHhCCCceEEEec
Confidence            47999999988888665544223345899999999753 34444444333 334556655553    3446789999887


Q ss_pred             ccCC--hhhH-------HHHHHHHHhh---cccCeEEEEEc
Q 041205          212 LAGN--EEEK-------AKILGHIRKY---MKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm--~edK-------~~VL~eL~rv---LKPGGvLVvRs  240 (535)
                      .+..  -+..       ..++.++.+.   ..|+|++++-+
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            7632  1111       3344444332   35677766643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.44  E-value=0.25  Score=42.93  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=53.4

Q ss_pred             CCCCEEEEEccCCChhhHH-HHHhhcCCCcEEEEE-eCChhHHHHHHHHHhhcCCcCCCeEEEEcccccccc--CCCCcc
Q 041205          130 AQLKKVAFVGSGPMPLTSI-ILASQHMKSTHFDNI-DIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKE--KLGEYD  205 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI-~LAk~~l~Ga~VtGI-DIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~--dL~~FD  205 (535)
                      ++..||.-||||.+|...+ -+.+ ..+..+++++ |++++.-.  ....++.|     +.+..+...++..  +..+.|
T Consensus         2 ~kkirvaIIGaG~ig~~~~~~~l~-~~~~~el~avas~~~~~~~--~~~a~~~~-----i~~~~~~~d~l~~~~~~~~iD   73 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDLMIKVLR-NAKYLEMGAMVGIDAASDG--LARAQRMG-----VTTTYAGVEGLIKLPEFADID   73 (157)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHH-HCSSEEEEEEECSCTTCHH--HHHHHHTT-----CCEESSHHHHHHHSGGGGGEE
T ss_pred             CCCcEEEEEcCcHHHHHHHHHHHh-hCCcceEEEEEecchhccc--hhhhhhcC-----CcccccceeeeeecccccccC
Confidence            4567999999997665443 2323 3678888887 77765322  22334445     3444443333332  234689


Q ss_pred             eEEeccccCChhhHHHHHHHHHhhcccCeEEEEEcc
Q 041205          206 CIILAALAGNEEEKAKILGHIRKYMKEGGVLLVRSA  241 (535)
Q Consensus       206 vVfiaALVgm~edK~~VL~eL~rvLKPGGvLVvRsa  241 (535)
                      +||++.-.|....+..    ..+.++.|-.++-.++
T Consensus        74 iVf~ATpag~h~~~~~----~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          74 FVFDATSASAHVQNEA----LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEECSCHHHHHHHHH----HHHHHCTTCEEEECST
T ss_pred             EEEEcCCchhHHHhHH----HHHHHHcCCEEEEccc
Confidence            9998633221011222    2234566655554444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.94  E-value=0.16  Score=44.35  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=31.7

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLAR  174 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR  174 (535)
                      |||.-||.|-+|++.-..+.   .|.+|+|+|+|++.++.-+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCChhHHHHHHHHH---CCCcEEEEECCHHHHHHHh
Confidence            68999999988887655443   4789999999999887655

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.83  E-value=0.48  Score=41.27  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcc-CCChhh-HHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc---ccccCCCCc
Q 041205          130 AQLKKVAFVGS-GPMPLT-SIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM---EVKEKLGEY  204 (535)
Q Consensus       130 ~~pkRVLeIGS-GplPlT-AI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~---el~~dL~~F  204 (535)
                      -++++|+-.|. |.+|.. +..+++   .|++|+.++++++..+...+.+....    ++.+...|+.   ++....++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAG---EGAEVVLCGRKLDKAQAAADSVNKRF----KVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHH----TCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHh---hccchhhcccchHHHHHHHHHHHhcc----chhhhhhhcccHHHHHHHhcCc
Confidence            47899999995 433433 233444   68999999999999877777665533    2344555554   333344678


Q ss_pred             ceEEeccccCC
Q 041205          205 DCIILAALAGN  215 (535)
Q Consensus       205 DvVfiaALVgm  215 (535)
                      |+|+..+..++
T Consensus        94 Dilin~Ag~g~  104 (191)
T d1luaa1          94 HFVFTAGAIGL  104 (191)
T ss_dssp             SEEEECCCTTC
T ss_pred             CeeeecCcccc
Confidence            98887766554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=88.69  E-value=0.41  Score=39.86  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CCEEEEEc-cCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          132 LKKVAFVG-SGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       132 pkRVLeIG-SGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      -+||++|| .|-+|.+   ||+++ ..|..|+++|+++......                          .....|.|++
T Consensus         9 ~~kI~iIGg~G~mG~~---la~~L~~~G~~V~~~d~~~~~~~~~--------------------------~~~~~~~v~~   59 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGL---FARYLRASGYPISILDREDWAVAES--------------------------ILANADVVIV   59 (152)
T ss_dssp             CCCEEEETTTSHHHHH---HHHHHHTTTCCEEEECTTCGGGHHH--------------------------HHTTCSEEEE
T ss_pred             CCeEEEEcCCCHHHHH---HHHHHHHcCCCcEecccccccccch--------------------------hhhhcccccc
Confidence            36999999 6877665   33322 3678999999987543211                          0124566766


Q ss_pred             ccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          210 AALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       210 aALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      ...+   ..-..++.++...+++|.+++-
T Consensus        60 ~~~~---~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2          60 SVPI---NLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             CSCG---GGHHHHHHHHGGGCCTTSEEEE
T ss_pred             ccch---hhheeeeecccccccCCceEEE
Confidence            6555   5677888889998888876653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.44  E-value=2.1  Score=36.41  Aligned_cols=106  Identities=18%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHH---HHHHHHHhhcCCcCCCe--EEEEccccccccCCCCcce
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETAN---NLARRIVSSDDEIEKRM--KFLTCDIMEVKEKLGEYDC  206 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI---elAR~li~~lG~Ls~rI--~Fi~GDA~el~~dL~~FDv  206 (535)
                      +||.-|| +|.+|.|..++......-.++.-+|+++...   ..|..+.........++  .+...+-   ..++.+.|+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d---~~~l~~aDv   77 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN---LRIIDESDV   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC---GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch---HHHhccceE
Confidence            5899999 5999988666554222225899999997542   34445544222112233  3333322   234567899


Q ss_pred             EEecccc----CC-h----hhHHHHHHHHHhhc---ccCeEEEEEcc
Q 041205          207 IILAALA----GN-E----EEKAKILGHIRKYM---KEGGVLLVRSA  241 (535)
Q Consensus       207 VfiaALV----gm-~----edK~~VL~eL~rvL---KPGGvLVvRsa  241 (535)
                      |++.+..    |+ .    ..=.++++++.+.+   .|++++++-++
T Consensus        78 VVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVtNP  124 (145)
T d1hyea1          78 VIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNP  124 (145)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSS
T ss_pred             EEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEcCc
Confidence            9987665    33 1    11123334433333   47788776443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.22  E-value=1.9  Score=36.45  Aligned_cols=104  Identities=23%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHhhcCCcCCCeEEEE-ccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANN-LARRIVSSDDEIEKRMKFLT-CDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIe-lAR~li~~lG~Ls~rI~Fi~-GDA~el~~dL~~FDvVfia  210 (535)
                      +||.-||+|-.|.+.-+....-.--.+++-+|++++..+ .|..+-.....+....++.. +|.    .++.+.|+|++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~----~~~~~adiVvit   76 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY----SLLKGSEIIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH----HHhccccEEEEe
Confidence            589999999888876554331112257999999998742 23333332211234445443 343    245678999988


Q ss_pred             cccC----C-----hhhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          211 ALAG----N-----EEEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       211 ALVg----m-----~edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      +...    +     ...-..++..+.+.+   .|.|++++-+
T Consensus        77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             ccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            7652    2     122233444444433   5677776644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.11  E-value=0.57  Score=38.20  Aligned_cols=52  Identities=19%  Similarity=0.226  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC--------ChhHHHHHHHHHhhcC
Q 041205          128 GVAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI--------DETANNLARRIVSSDD  181 (535)
Q Consensus       128 ~l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI--------DpeAIelAR~li~~lG  181 (535)
                      .+..|+||+-||+|++|+-......  ..|.+|+-++.        |+++.+..++.+++.|
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~g   77 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNN   77 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhCC
Confidence            3466899999999976655443333  36899999997        7778888888888877

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=87.90  E-value=0.24  Score=42.69  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEE-EccccccccCCCCcceE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvV  207 (535)
                      .+..||.-||+|.+|.+..++... .+=++++-+|++++.. ..|..+......+....... ..+..   ..+.+-|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~-~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYE---AALTGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHH---HHHTTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchh---hhhcCCCeE
Confidence            567899999999988765543331 1225899999998643 33344332211011222222 23221   233567999


Q ss_pred             EeccccCC--------------hhhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          208 ILAALAGN--------------EEEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       208 fiaALVgm--------------~edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      ++.+.++-              ...-..++.++.+.+   .|+|++++-+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            98775521              111233444444433   4788877644

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.19  E-value=1.6  Score=37.00  Aligned_cols=78  Identities=17%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEec
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfia  210 (535)
                      |.||.-||+|-+|.+..+......-..+++-+|++++.. ..+..+-.... +.....+..++-.   .++.+-|+|++.
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~i~~~~~~---~~~~daDvVVit   76 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDP---EICRDADMVVIT   76 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCG---GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-cCCCceeecCCCH---HHhhCCcEEEEe
Confidence            679999999999988654433112345899999999764 22333333333 3344566544432   234568999988


Q ss_pred             ccc
Q 041205          211 ALA  213 (535)
Q Consensus       211 ALV  213 (535)
                      +..
T Consensus        77 aG~   79 (143)
T d1llda1          77 AGP   79 (143)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            776

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.10  E-value=0.74  Score=38.93  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             CEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHhhcCCcCCCeEEE-EccccccccCCCCcceEEec
Q 041205          133 KKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNL-ARRIVSSDDEIEKRMKFL-TCDIMEVKEKLGEYDCIILA  210 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIel-AR~li~~lG~Ls~rI~Fi-~GDA~el~~dL~~FDvVfia  210 (535)
                      ++|.-||+|-+|.+..++... -.-+.++.+|++++..+- +..+..........+++. ++|-.    +..+-|+|++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~-~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~----~~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA-KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA----DTANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG----GGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH----HhcCCCEEEEe
Confidence            589999999998885543331 123689999999876433 333322211112344444 44532    34568999987


Q ss_pred             ccc----CC-----hhhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          211 ALA----GN-----EEEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       211 ALV----gm-----~edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      +..    ++     ...-..++.++.+.+   .|.|++++-+
T Consensus        77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          77 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             CSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             eeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            755    22     122233444444433   5678777744

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.92  E-value=1.2  Score=38.12  Aligned_cols=106  Identities=19%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      |..||.-||+|-.|.|.-.++.... =.++.-+|++++.. ..|..+.........+..+...+-   ..++.+.|+|++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~---~~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT---YDDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC---GGGGTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccc---ccccCCCcEEEE
Confidence            4579999999988877655544222 25899999988653 333333322110113444443332   234467899998


Q ss_pred             ccccCC--------------hhhHHHHHHHHHhhcc---cCeEEEEEc
Q 041205          210 AALAGN--------------EEEKAKILGHIRKYMK---EGGVLLVRS  240 (535)
Q Consensus       210 aALVgm--------------~edK~~VL~eL~rvLK---PGGvLVvRs  240 (535)
                      .+.+.-              ...-..++..+.+.++   |++++++-+
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            776531              1223445566554444   888777644

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.51  E-value=1.7  Score=36.86  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CEEEEEc-cCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVG-SGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIG-SGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      +||.-|| +|.+|.+..++...-.--.+++-+|+++. -..|..+..... .. ........ .+....+.+.|+|++.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~-~~-~~~~~~~~-~~~~~~~~~aDivVita   76 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIET-RA-TVKGYLGP-EQLPDCLKGCDVVVIPA   76 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSS-SC-EEEEEESG-GGHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhh-hc-CCCeEEcC-CChHHHhCCCCEEEECC
Confidence            4899999 59999887766552112257999999874 344544433222 11 12222221 22233446789999876


Q ss_pred             cc----CC-----hh----hHHHHHHHHHhhcccCeEEEEEc
Q 041205          212 LA----GN-----EE----EKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LV----gm-----~e----dK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      ..    ||     ..    --..+...+.++ .|.|++++-+
T Consensus        77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt  117 (144)
T d1mlda1          77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (144)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence            65    22     11    223455555555 7788777744

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.99  E-value=0.27  Score=42.74  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeC--ChhHHHHHHHH--HhhcCCcCCCeEEEEccccccccCCCCcceE
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDI--DETANNLARRI--VSSDDEIEKRMKFLTCDIMEVKEKLGEYDCI  207 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDI--DpeAIelAR~l--i~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvV  207 (535)
                      |+|.-||+|++|.+--. |++   .|-.|+-+..  |++.++.-.+.  ....+.--....+...  .++.....+.|+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~---~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ad~I   75 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP--EQLEKCLENAEVV   75 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG--GGHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc--ccHHHHHhccchh
Confidence            68999999998876443 333   3556666644  55544332211  1112210011122111  1122233568999


Q ss_pred             EeccccCChhhHHHHHHHHHhhcccCeEEEE
Q 041205          208 ILAALAGNEEEKAKILGHIRKYMKEGGVLLV  238 (535)
Q Consensus       208 fiaALVgm~edK~~VL~eL~rvLKPGGvLVv  238 (535)
                      +++---   ..-..+++++.+.++++.++++
T Consensus        76 i~avps---~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGVST---DGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECSCG---GGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hcccch---hhhHHHHHhhccccccceeccc
Confidence            986333   4678899999999988755544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.86  E-value=0.87  Score=37.27  Aligned_cols=45  Identities=11%  Similarity=0.099  Sum_probs=31.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcC
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDD  181 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG  181 (535)
                      .++|+-||+|-+|.+......  -.|..|+.+|++.+..+   ++.+..+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~--~~g~~V~v~dr~~~~a~---~l~~~~~   46 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLT--DSGIKVTVACRTLESAK---KLSAGVQ   46 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHH--TTTCEEEEEESCHHHHH---HHHTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCEEEEEECChHHHH---HHHhccc
Confidence            589999999987765443222  25789999999998554   4554444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=85.66  E-value=1.2  Score=37.54  Aligned_cols=91  Identities=11%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             CEEEEEccCCChhhHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEecc
Q 041205          133 KKVAFVGSGPMPLTSII-LASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIILAA  211 (535)
Q Consensus       133 kRVLeIGSGplPlTAI~-LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfiaA  211 (535)
                      .||..||||.+|-.... ... ..++..++.+|.+++..+   .+.+..+ .. .   ...|..++..  .++|+|+++.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~-~~~~~~~~~~d~~~~~~~---~~~~~~~-~~-~---~~~~~~~ll~--~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLA-QWPDIELVLCTRNPKVLG---TLATRYR-VS-A---TCTDYRDVLQ--YGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHT-TSTTEEEEEECSCHHHHH---HHHHHTT-CC-C---CCSSTTGGGG--GCCSEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHH-hCCCcEEEEEECCHHHHH---HHHHhcc-cc-c---ccccHHHhcc--cccceecccc
Confidence            58999999955432111 112 257888899999987654   4444555 21 1   2356555543  3589999875


Q ss_pred             ccCChhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          212 LAGNEEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       212 LVgm~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -.+   .-.   +.+...++.|=-+++--
T Consensus        71 p~~---~H~---~~~~~al~~gk~V~~EK   93 (167)
T d1xeaa1          71 ATD---VHS---TLAAFFLHLGIPTFVDK   93 (167)
T ss_dssp             CGG---GHH---HHHHHHHHTTCCEEEES
T ss_pred             ccc---ccc---cccccccccccccccCC
Confidence            542   222   33334455554455543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=1.6  Score=37.19  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEEe
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCIIL  209 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVfi  209 (535)
                      .++++||-+|+|.. -.|++.|- ...|++|+-+.++.+..+.-.+.+...+    .+....-+  +  .....+|+|+.
T Consensus        16 ~~~k~vlIlGaGGa-arai~~al-~~~g~~i~I~nRt~~ka~~l~~~~~~~~----~~~~~~~~--~--~~~~~~dliIN   85 (170)
T d1nyta1          16 RPGLRILLIGAGGA-SRGVLLPL-LSLDCAVTITNRTVSRAEELAKLFAHTG----SIQALSMD--E--LEGHEFDLIIN   85 (170)
T ss_dssp             CTTCEEEEECCSHH-HHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHTGGGS----SEEECCSG--G--GTTCCCSEEEE
T ss_pred             CCCCEEEEECCcHH-HHHHHHHh-cccceEEEeccchHHHHHHHHHHHhhcc----cccccccc--c--ccccccceeec
Confidence            57899999999943 33344432 1246789999999866544333333333    23332222  1  12356999998


Q ss_pred             ccccCC
Q 041205          210 AALAGN  215 (535)
Q Consensus       210 aALVgm  215 (535)
                      ..-+||
T Consensus        86 ~Tp~G~   91 (170)
T d1nyta1          86 ATSSGI   91 (170)
T ss_dssp             CCSCGG
T ss_pred             ccccCc
Confidence            888876

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=85.08  E-value=0.31  Score=39.62  Aligned_cols=37  Identities=22%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE  167 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp  167 (535)
                      .++||+-||+|+.|+++....+++.++.+|+-||.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3789999999988887655555445677888887665

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.91  E-value=1.1  Score=39.23  Aligned_cols=46  Identities=20%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhh
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSS  179 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~  179 (535)
                      .+++.|||-=+|. |.|+ ..|.  ..|-+.+|+|+|++.++.|++.+++
T Consensus       211 ~~gd~VlDpF~GS-GTT~-~aa~--~~~R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         211 NPNDLVLDCFMGS-GTTA-IVAK--KLGRNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             CTTCEEEESSCTT-CHHH-HHHH--HTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCc-hHHH-HHHH--HcCCeEEEEeCCHHHHHHHHHHHcC
Confidence            7899999865553 3444 3444  2688999999999999999998753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.08  E-value=6.1  Score=34.07  Aligned_cols=107  Identities=12%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHH-HHHHHHHhhcCCcCCCeEEEEccccccccCCCCcceEE
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETAN-NLARRIVSSDDEIEKRMKFLTCDIMEVKEKLGEYDCII  208 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAI-elAR~li~~lG~Ls~rI~Fi~GDA~el~~dL~~FDvVf  208 (535)
                      .+..||.-||+|.+|.|..+.....-.-.+++-+|++++.. ..|..+...............+|-    .++.+.|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~----~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY----SVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG----GGGTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch----hhcccccEEE
Confidence            34579999999998888766655222335899999997654 444444432221223333334442    3456789888


Q ss_pred             ecccc----CC-h----hhHHHHHHHHHhhc---ccCeEEEEEc
Q 041205          209 LAALA----GN-E----EEKAKILGHIRKYM---KEGGVLLVRS  240 (535)
Q Consensus       209 iaALV----gm-~----edK~~VL~eL~rvL---KPGGvLVvRs  240 (535)
                      +.+..    |+ .    ..=.++++++.+.+   .|+|++++-+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            86655    23 1    11223444443333   5677777644

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.70  E-value=1  Score=36.68  Aligned_cols=50  Identities=10%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh--------hHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE--------TANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp--------eAIelAR~li~~lG  181 (535)
                      ..|++++-||.|++|+=.-.+...  .|++|+-++..+        ++.+..++.+++.|
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~G   78 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQG   78 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHhcc
Confidence            467999999999877654444342  689999998754        88899999998888

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.43  E-value=0.26  Score=43.96  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             EEEEccccccccCC--CCcceEEeccccCC-----------hhhHHHHHHHHHhhcccCeEEEEEc
Q 041205          188 KFLTCDIMEVKEKL--GEYDCIILAALAGN-----------EEEKAKILGHIRKYMKEGGVLLVRS  240 (535)
Q Consensus       188 ~Fi~GDA~el~~dL--~~FDvVfiaALVgm-----------~edK~~VL~eL~rvLKPGGvLVvRs  240 (535)
                      -|+.||..++...+  +.+|+||++---+.           ......++.++.|+|+|||.+++..
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            47889998876655  56999999854321           1224677888999999999998854

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.39  E-value=1.6  Score=34.82  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=37.0

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC--------ChhHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI--------DETANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI--------DpeAIelAR~li~~lG  181 (535)
                      .-|++|+-||+|+.|+-.-....+  .|.+|+-++.        |+++.+..++.+++.|
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~g   76 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERILPTYDSELTAPVAESLKKLG   76 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHT
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeeccccccccchhHHHHHHHHHhhc
Confidence            457999999999877655444332  5889999986        4557777778888777

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=83.33  E-value=0.29  Score=42.67  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205          129 VAQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE  167 (535)
Q Consensus       129 l~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp  167 (535)
                      ...|++|+-||+|+.|+|+-+...+  .|.+|+-+|.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            4678999999999999988775553  578999999875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.29  E-value=1.3  Score=35.37  Aligned_cols=50  Identities=8%  Similarity=0.073  Sum_probs=36.2

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh--------HHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET--------ANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe--------AIelAR~li~~lG  181 (535)
                      ..|++|+-||.|++|+-.-....  ..|.+||-++..+.        +.+...+.+++.|
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~G   77 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG   77 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCeEEEECCCccceeeeeeec--ccccEEEEEEecceecccccchhHHHHHHHHHhcC
Confidence            56799999999987765544444  26899999997654        5666666666666

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.83  E-value=2  Score=38.94  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             CCCEEEEEccCCChh---hHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---------
Q 041205          131 QLKKVAFVGSGPMPL---TSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---------  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPl---TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---------  198 (535)
                      .++.+|--|.+ .|+   .+..||+   .|++|+.+|++++.++.+.+.++..|   .++.++.+|+.+..         
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAE---EGTAIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence            46778877875 454   3455666   79999999999999999888888877   47888899987521         


Q ss_pred             -cCCCCcceEEecc
Q 041205          199 -EKLGEYDCIILAA  211 (535)
Q Consensus       199 -~dL~~FDvVfiaA  211 (535)
                       ...+..|+++..+
T Consensus        77 ~~~~g~iDilVnna   90 (260)
T d1zema1          77 VRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCCeehhhh
Confidence             1224577766443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.40  E-value=5.7  Score=31.96  Aligned_cols=57  Identities=14%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh---------hHHHHHHHHHhhcCCcCCCeEEEEcc
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE---------TANNLARRIVSSDDEIEKRMKFLTCD  193 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp---------eAIelAR~li~~lG~Ls~rI~Fi~GD  193 (535)
                      ..+++|+-||.|++|+-......  ..|.+||-||..+         ++.+..++.++..|     |+++.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~--~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g-----v~~~~~~   93 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-----ITIATGE   93 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT-----EEEEESC
T ss_pred             cCCCEEEEECChHHHHHHHHHhh--ccceEEEEEEecCcccccccchhhHHHHHHHhhcCC-----eEEEeCc
Confidence            56789999999987766544433  2588999997653         34455555555555     5665554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.31  E-value=3.6  Score=33.33  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET  168 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe  168 (535)
                      .++++|+-||.|++|+-......  ..|.+|+-||.++.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATAR--TAGVHVSLVETQPR   64 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSS
T ss_pred             hcCCeEEEECcchhHHHHHHHhh--cccceEEEEeeccc
Confidence            56899999999976664433323  25899999987654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=82.22  E-value=1  Score=38.84  Aligned_cols=84  Identities=13%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEcccc---ccccCCCCcce
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIM---EVKEKLGEYDC  206 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~---el~~dL~~FDv  206 (535)
                      -.+++|+-||||..+-+ +..+-.......++-++++++..+.+..++++.+. .-.......+..   ++...+..+|+
T Consensus        16 l~~k~vlIlGaGGaara-i~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTA-IGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CTTCEEEEECCSHHHHH-HHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-HSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCcHHHHH-HHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-hcCcceEeeecccccchhhhhcccce
Confidence            36789999999944433 33322123345899999999988888877766541 111222223322   22223356899


Q ss_pred             EEeccccCC
Q 041205          207 IILAALAGN  215 (535)
Q Consensus       207 VfiaALVgm  215 (535)
                      |+...-+||
T Consensus        94 iIN~Tp~G~  102 (182)
T d1vi2a1          94 LTNGTKVGM  102 (182)
T ss_dssp             EEECSSTTS
T ss_pred             eccccCCcc
Confidence            998877776

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.62  E-value=0.48  Score=39.81  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             CCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 041205          132 LKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDE  167 (535)
Q Consensus       132 pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDp  167 (535)
                      ++||+-||+|+-|+++-+.+.+  .|.+|+-+|.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            5899999999999988665552  688999999764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.52  E-value=1.6  Score=39.99  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             CCCEEEEEccCCChh---hHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc---------
Q 041205          131 QLKKVAFVGSGPMPL---TSIILASQHMKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK---------  198 (535)
Q Consensus       131 ~pkRVLeIGSGplPl---TAI~LAk~~l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~---------  198 (535)
                      .+++++--|++ .|+   ++..||+   .|++|+.+|++++.++.+.+.+...|.-..++.++.+|+.+..         
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSS-NGIGRSAAVIFAK---EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            36777777775 455   4555666   7999999999999998888888777623357899999987522         


Q ss_pred             -cCCCCcceEEeccc
Q 041205          199 -EKLGEYDCIILAAL  212 (535)
Q Consensus       199 -~dL~~FDvVfiaAL  212 (535)
                       ...+..|+++..+.
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence             12245787776543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=81.30  E-value=3.4  Score=33.90  Aligned_cols=50  Identities=12%  Similarity=0.173  Sum_probs=34.4

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeCChh---------HHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDIDET---------ANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDIDpe---------AIelAR~li~~lG  181 (535)
                      .++++|+-||+|++|+-......  ..|.+|+-||..+.         .-+..++.+++.|
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~--~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~G   91 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG   91 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCchHHHHHHHHHH--hhCcceeeeeecccccccccchhhhhhhhhcccccc
Confidence            56899999999987766554444  25899999997544         3344445556656

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=1.8  Score=39.28  Aligned_cols=79  Identities=10%  Similarity=-0.004  Sum_probs=54.6

Q ss_pred             CCCEEEEEccCCChhhHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHhhcCCcCCCeEEEEccccccc----------c
Q 041205          131 QLKKVAFVGSGPMPLTSIILASQH-MKSTHFDNIDIDETANNLARRIVSSDDEIEKRMKFLTCDIMEVK----------E  199 (535)
Q Consensus       131 ~pkRVLeIGSGplPlTAI~LAk~~-l~Ga~VtGIDIDpeAIelAR~li~~lG~Ls~rI~Fi~GDA~el~----------~  199 (535)
                      +++.||-.|++ .|+-.- +|+++ ..|++|+..|++++.++...+-++..| ...++.++.+|+.+..          .
T Consensus         9 k~Kv~lITGas-~GIG~a-iA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAA-VARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTT-SHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            46788888886 455432 23322 269999999999999999888888877 4567888899987521          1


Q ss_pred             CCCCcceEEeccc
Q 041205          200 KLGEYDCIILAAL  212 (535)
Q Consensus       200 dL~~FDvVfiaAL  212 (535)
                      ..+..|+++..+.
T Consensus        86 ~~g~iD~lVnnAg   98 (257)
T d1xg5a_          86 QHSGVDICINNAG   98 (257)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             hcCCCCEEEeccc
Confidence            2345776665443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.11  E-value=1.4  Score=35.80  Aligned_cols=50  Identities=10%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             CCCCEEEEEccCCChhhHHHHHhhcCCCcEEEEEeC--------ChhHHHHHHHHHhhcC
Q 041205          130 AQLKKVAFVGSGPMPLTSIILASQHMKSTHFDNIDI--------DETANNLARRIVSSDD  181 (535)
Q Consensus       130 ~~pkRVLeIGSGplPlTAI~LAk~~l~Ga~VtGIDI--------DpeAIelAR~li~~lG  181 (535)
                      .-|+||+-||+|++|+=...+..  ..|.+|+-++.        |++..+...+.+++.|
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~G   77 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG   77 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEEcCCccHHHHHHHHh--cCCcEEEEEeeccccccchhhHHHHHHHHHHHHCC
Confidence            35799999999976665444444  26899999998        5667777777777777