Citrus Sinensis ID: 041207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEEKK
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccHHHHHHHHHHHHHHHccEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHccEEEEEEccccccccHHHHHHHHHHHHHHHHcEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
aagipkklaptigvsvdhrrknrslegLQSNVQRLKTYKAklvvfprrarkfkagdsapeeLATAtqvqgpympiaperptVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEEKK
Flexible Loop (DISEMBL)
aagipkklaptigvsvdhrrknrsleglqsnvqrlktykaklvvfprrarkfkagdsapeelatatqvqgpympiapeRPTVELVKVTQDMKsfkaydklriervnerhfgarmkkaaeaekeekk
Low Complexity Region (SEG)
AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMkkaaeaekeekk
Disordered region (IsUnstruct)
*********************************RLKTYKAKLVVFPR**********************************VELVKVTQDMKSFKAYDKLRIE***********************
Disordered Region (DISOPRED)
*AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVF********************TQVQGPYM**********************AYDKLRIERVNERHFGARMK***********
Disordered Region (DISEMBL)
AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA**************
Disordered Region (DISPRO)
**GIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRA***********ELA*****QGPYMPIAP*******VKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P41129	206	60S ribosomal protein L13	N/A	no	1.0	0.611	0.785	3e-52
P41128	206	60S ribosomal protein L13	N/A	no	1.0	0.611	0.777	2e-51
P41127	206	60S ribosomal protein L13	yes	no	0.880	0.538	0.792	6e-48
Q9FF90	206	60S ribosomal protein L13	no	no	0.833	0.509	0.809	5e-45
Q9SMT4	206	Putative 60S ribosomal pr	no	no	0.888	0.543	0.732	8e-43
P49627	202	60S ribosomal protein L13	N/A	no	0.920	0.574	0.637	1e-36
O48513	208	60S ribosomal protein L13	N/A	no	0.984	0.596	0.555	5e-30
Q90Z10	211	60S ribosomal protein L13	yes	no	0.984	0.587	0.540	8e-30
P41123	211	60S ribosomal protein L13	yes	no	0.976	0.582	0.512	3e-27
P41125	211	60S ribosomal protein L13	yes	no	0.976	0.582	0.504	3e-27

>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/126 (78%), Positives = 111/126 (88%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  E
Sbjct: 81  AAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAE 140

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG YMPI  E+  +ELVK+T +MKS  AYDK+R+ER N+RH GAR K+AA+A
Sbjct: 141 ELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGARAKRAADA 200

Query: 121 EKEEKK 126
           EKEEKK
Sbjct: 201 EKEEKK 206

Brassica napus (taxid: 3708)

>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 111/126 (88%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           +AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  E
Sbjct: 81  SAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAE 140

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG YMPI  E+   ELVK+T +MKS KA+DK+R+ER N+RH GAR K+AA+A
Sbjct: 141 ELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGARAKRAADA 200

Query: 121 EKEEKK 126
           EKEEKK
Sbjct: 201 EKEEKK 206

Brassica napus (taxid: 3708)

>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 101/111 (90%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PE
Sbjct: 81  AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
           ELA ATQVQG Y+PI  E+PT+ELVK+T +MKSFKA+DK+R+ER N+RH G
Sbjct: 141 ELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 95/105 (90%)

Query: 2   AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
           AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 62  LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVN 106
           LA ATQVQG YMPIA  +  +ELVK+T D+K+FKAYDK+R+ER N
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTN 186

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 93/112 (83%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +
Sbjct: 81  AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQ 140

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 112
           ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G 
Sbjct: 141 ELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGV 192

Arabidopsis thaliana (taxid: 3702)

>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 88/116 (75%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P 
Sbjct: 77  AAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPR 136

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKK 116
              TATQV G YMPI  E+  + L KV + MKSF AY KLR+ER NERH GARMK+
Sbjct: 137 NCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARMKR 192

Nicotiana tabacum (taxid: 4097)

>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 94/126 (74%), Gaps = 2/126 (1%)

Query: 2   AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
           AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  +
Sbjct: 83  AGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAAD 142

Query: 62  LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAE-- 119
            + A+Q +G  +P+   +P +ELVK+T DMK    Y KLRIERVN R  G R K+AA+  
Sbjct: 143 CSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMREKRAADEA 202

Query: 120 AEKEEK 125
           A+K++K
Sbjct: 203 AKKDDK 208

Chlamydomonas sp. (strain W80) (taxid: 103365)

>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 87/124 (70%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  E
Sbjct: 83  AAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEE 142

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           EL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG R K+A EA
Sbjct: 143 ELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIRAKRAKEA 202

Query: 121 EKEE 124
            +++
Sbjct: 203 AEQD 206

Danio rerio (taxid: 7955)

>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 86/123 (69%)

Query: 2   AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
           AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct: 84  AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query: 62  LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
           L  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R K+A EA 
Sbjct: 144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203

Query: 122 KEE 124
           +++
Sbjct: 204 EQD 206

Rattus norvegicus (taxid: 10116)

>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 86/123 (69%)

Query: 2   AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
           AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEE
Sbjct: 84  AGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEE 143

Query: 62  LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
           L  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG R K+A EA 
Sbjct: 144 LKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAA 203

Query: 122 KEE 124
           +++
Sbjct: 204 EQD 206

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
192912994	207	60S ribosomal protein L13E [Elaeis guine	1.0	0.608	0.849	5e-56
225449778	207	PREDICTED: 60S ribosomal protein L13-2 [	1.0	0.608	0.857	7e-56
147845490	207	hypothetical protein VITISV_025451 [Viti	1.0	0.608	0.857	9e-56
449458303	206	PREDICTED: 60S ribosomal protein L13-2-l	1.0	0.611	0.825	2e-54
217071178	207	unknown [Medicago truncatula] gi|3885082	1.0	0.608	0.833	6e-54
357511725	141	60S ribosomal protein L13 [Medicago trun	1.0	0.893	0.809	9e-54
357484613	240	60S ribosomal protein L13 [Medicago trun	1.0	0.525	0.809	1e-53
388515571	207	unknown [Medicago truncatula]	1.0	0.608	0.809	1e-53
217075518	207	unknown [Medicago truncatula]	0.992	0.603	0.824	2e-53
388519033	207	unknown [Medicago truncatula]	1.0	0.608	0.825	3e-53

>gi|192912994|gb|ACF06605.1| 60S ribosomal protein L13E [Elaeis guineensis]

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 119/126 (94%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYKAKLV+FPRRARKFKAGDSAPE
Sbjct: 82  AAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKFKAGDSAPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELATATQVQGPYMPI  E+P+VELVKVT +MKSF+AY KLR+ER+ +R  GARMKKAAEA
Sbjct: 142 ELATATQVQGPYMPIVCEKPSVELVKVTDEMKSFRAYAKLRVERMTQRQVGARMKKAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449778|ref|XP_002274000.1| PREDICTED: 60S ribosomal protein L13-2 [Vitis vinifera] gi|296085355|emb|CBI29087.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDHRRKNRSLE LQ+NVQRLKTYKAKLVVFPRRARKFKAGDSAPE
Sbjct: 82  AAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKFKAGDSAPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           EL TATQVQG YMP+  E+P VELVKVT +MKSFKAY KLR+ER+NERH G RMKKAAEA
Sbjct: 142 ELGTATQVQGQYMPVVQEKPVVELVKVTDEMKSFKAYGKLRVERMNERHVGVRMKKAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845490|emb|CAN80613.1| hypothetical protein VITISV_025451 [Vitis vinifera]

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDHRRKNRSLE LQ+NVQRLKTYKAKLVVFPRRARKFKAGDSAPE
Sbjct: 82  AAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKFKAGDSAPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           EL TATQVQG YMP+  E+P VELVKVT +MKSFKAY KLR+ER+NERH G RMKKAAEA
Sbjct: 142 ELGTATQVQGQYMPVVQEKPXVELVKVTDEMKSFKAYGKLRVERMNERHVGVRMKKAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458303|ref|XP_004146887.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] gi|449458305|ref|XP_004146888.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 2 [Cucumis sativus] gi|449513147|ref|XP_004164245.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] gi|449513151|ref|XP_004164246.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 2 [Cucumis sativus]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 117/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDHRR+NRSLE LQ+NVQRLKTYKAK+VVFPRRARKFKAGDS PE
Sbjct: 81  AAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPE 140

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQGPY+PI  E+ +VELVKVT++MKSFKAYDKLR+ER N RH GAR+K+AAEA
Sbjct: 141 ELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKLRVERTNARHVGARLKRAAEA 200

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 201 EKEDKK 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071178|gb|ACJ83949.1| unknown [Medicago truncatula] gi|388508204|gb|AFK42168.1| unknown [Medicago truncatula]

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/126 (83%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDHRRKNRSLEGLQ+NVQRLKTYKAKLVVFPRRARK KAGDS PE
Sbjct: 82  AAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG Y+PI  E+PTVELVKVT +MK+FKAY KLR+ER N+RH GAR+K+AAEA
Sbjct: 142 ELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511725|ref|XP_003626151.1| 60S ribosomal protein L13 [Medicago truncatula] gi|355501166|gb|AES82369.1| 60S ribosomal protein L13 [Medicago truncatula]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           +AGIPKKLAPTIG+SVDHRRKNRSLEGLQ+NVQRLKTYKAKLVVFPRRARK KAGDS PE
Sbjct: 16  SAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPE 75

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG Y+PI  E+P+VELVK+T +MK+FKAY KLR+ER N+RH GAR+K+AAEA
Sbjct: 76  ELANATQVQGSYLPIVREKPSVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEA 135

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 136 EKEDKK 141

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484613|ref|XP_003612594.1| 60S ribosomal protein L13 [Medicago truncatula] gi|355513929|gb|AES95552.1| 60S ribosomal protein L13 [Medicago truncatula]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+S+DHRRKNRSLEGLQ+NVQRLKTYKAKLVVFPRRARK KAGDS PE
Sbjct: 115 AAGIPKKLAPTIGISIDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPE 174

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG Y+PI  E+P+VELVK+T +MK+FKAY KLR+ER N+RH GAR+K+AAEA
Sbjct: 175 ELANATQVQGSYLPIVSEKPSVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEA 234

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 235 EKEDKK 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515571|gb|AFK45847.1| unknown [Medicago truncatula]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 116/126 (92%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+S+DHRRKNRSLEGLQ+NVQRLKTYKAKLVVFPRRARK KAGDS PE
Sbjct: 82  AAGIPKKLAPTIGISIDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG Y+PI  E+P+VELVK+T +MK+FKAY KLR+ER N+RH GAR+K+AAEA
Sbjct: 142 ELANATQVQGSYLPIVSEKPSVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075518|gb|ACJ86119.1| unknown [Medicago truncatula]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/125 (82%), Positives = 115/125 (92%)

Query: 2   AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
           AGIPKKLAPTIG+SVDHRRKNRSLEGLQ+NVQRLKTYKAKL+VFPRRARK KAGDS PEE
Sbjct: 83  AGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLIVFPRRARKTKAGDSTPEE 142

Query: 62  LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAE 121
           LA ATQVQG Y+PI  E+PTVELVKVT +MK+FKAY KLR+ER N+RH GAR+K+AAEAE
Sbjct: 143 LANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAE 202

Query: 122 KEEKK 126
           KE+KK
Sbjct: 203 KEDKK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519033|gb|AFK47578.1| unknown [Medicago truncatula]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 115/126 (91%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGIPKKLAPTIG+SVDHRRKNRSLEGLQ+NVQRLKTYKAKLVVFPRRARK KAGDS PE
Sbjct: 82  AAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKTKAGDSTPE 141

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
           ELA ATQVQG Y+PI  E+PTVELVKVT +MK+ KAY KLR+ER N+RH GAR+K+AAEA
Sbjct: 142 ELANATQVQGSYLPIVREKPTVELVKVTDEMKALKAYYKLRLERTNKRHLGARLKRAAEA 201

Query: 121 EKEEKK 126
           EKE+KK
Sbjct: 202 EKEDKK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2101283	206	BBC1 "breast basic conserved 1	0.896	0.548	0.796	2.1e-45
TAIR|locus:2172863	206	AT5G23900 [Arabidopsis thalian	0.888	0.543	0.803	5e-44
TAIR|locus:2101328	206	AT3G48960 [Arabidopsis thalian	0.896	0.548	0.734	6.8e-40
ZFIN|ZDB-GENE-031007-1	211	rpl13 "ribosomal protein L13"	0.896	0.535	0.557	2.8e-27
RGD|2322065	211	LOC100360491 "60S ribosomal pr	0.888	0.530	0.526	3.6e-25
RGD|621179	211	Rpl13 "ribosomal protein L13"	0.888	0.530	0.526	3.6e-25
UNIPROTKB|P41125	211	RPL13 "60S ribosomal protein L	0.888	0.530	0.517	5.9e-25
UNIPROTKB|E2R4F5	211	RPL13 "Uncharacterized protein	0.888	0.530	0.526	5.9e-25
MGI|MGI:105922	211	Rpl13 "ribosomal protein L13"	0.888	0.530	0.526	5.9e-25
UNIPROTKB|P26373	211	RPL13 "60S ribosomal protein L	0.888	0.530	0.517	7.6e-25

TAIR|locus:2101283 BBC1 "breast basic conserved 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 90/113 (79%), Positives = 103/113 (91%)

Query:     1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
             AAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PE
Sbjct:    81 AAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPE 140

Query:    61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             ELA ATQVQG Y+PI  E+PT+ELVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:   141 ELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS;TAS

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2172863 AT5G23900 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 90/112 (80%), Positives = 100/112 (89%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEE
Sbjct:    82 AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             LA ATQVQG YMPIA  +  +ELVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:   142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2101328 AT3G48960 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 83/113 (73%), Positives = 94/113 (83%)

Query:     1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
             AAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +
Sbjct:    81 AAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQ 140

Query:    61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G R
Sbjct:   141 ELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

ZFIN|ZDB-GENE-031007-1 rpl13 "ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 63/113 (55%), Positives = 79/113 (69%)

Query:     1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
             AAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  E
Sbjct:    83 AAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEE 142

Query:    61 ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             EL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG R
Sbjct:   143 ELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

RGD|2322065 LOC100360491 "60S ribosomal protein L13-like" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct:    84 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|621179 Rpl13 "ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct:    84 AGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;NAS

UNIPROTKB|P41125 RPL13 "60S ribosomal protein L13" [Gallus gallus (taxid:9031)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/112 (51%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEE
Sbjct:    84 AGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E2R4F5 RPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct:    84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:105922 Rpl13 "ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 59/112 (52%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct:    84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P26373 RPL13 "60S ribosomal protein L13" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/112 (51%), Positives = 78/112 (69%)

Query:     2 AGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEE 61
             AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EE
Sbjct:    84 AGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEE 143

Query:    62 LATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 113
             L  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:   144 LKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P41127	RL131_ARATH	No assigned EC number	0.7927	0.8809	0.5388	yes	no
P41128	RL131_BRANA	No assigned EC number	0.7777	1.0	0.6116	N/A	no
P41129	RL132_BRANA	No assigned EC number	0.7857	1.0	0.6116	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
pfam01294	179	pfam01294, Ribosomal_L13e, Ribosomal protein L13e	2e-43
PTZ00352	212	PTZ00352, PTZ00352, 60S ribosomal protein L13; Pro	8e-24
PTZ00192	218	PTZ00192, PTZ00192, 60S ribosomal protein L13; Pro	6e-21
COG4352	113	COG4352, RPL13, Ribosomal protein L13E [Translatio	3e-07

>gnl|CDD|110307 pfam01294, Ribosomal_L13e, Ribosomal protein L13e

 Score =  140 bits (354), Expect = 2e-43
 Identities = 64/103 (62%), Positives = 83/103 (80%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAGI KK A TIG++VDHRR+NRSLEGLQ+NVQRLK Y++KL++FPR  +K +AGDS+ E
Sbjct: 77  AAGINKKFARTIGIAVDHRRRNRSLEGLQANVQRLKEYQSKLILFPRNPKKPRAGDSSAE 136

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIE 103
           E+ +ATQ++GP MPIA E   VE  KVT++ KSFKA+  LR+ 
Sbjct: 137 EVKSATQLKGPVMPIAQEAKRVEARKVTKEEKSFKAFATLRLA 179

Length = 179

>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional

 Score = 90.9 bits (226), Expect = 8e-24
 Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 9/131 (6%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG----- 55
           AAG+  + A +IG++VDHRR+NRS E L  NV+RLK Y +KLV+FPR+ +K K G     
Sbjct: 80  AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGFAGIP 139

Query: 56  -DSAPEELAT---ATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
            D++ EE+             +P        +   +T++ ++F AY  LR  ++N +  G
Sbjct: 140 ADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVG 199

Query: 112 ARMKKAAEAEK 122
            + KK    EK
Sbjct: 200 KKEKKKQAKEK 210

Length = 212

>gnl|CDD|173472 PTZ00192, PTZ00192, 60S ribosomal protein L13; Provisional

 Score = 83.4 bits (206), Expect = 6e-21
 Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 16/137 (11%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAG+  + A TIG+ VD RRKN+S EG+  NVQRLKTY +KLV+FP   +K + G++  E
Sbjct: 87  AAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKVQKGEAKEE 146

Query: 61  ELATATQ---------VQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
           E+  ATQ         V G   P + E P V    V+++ +S   Y  L+      R FG
Sbjct: 147 EVKAATQDRSRFGDAAVGGVVTP-SREAPRV----VSKEERSKNVYAFLKKNHSAVRFFG 201

Query: 112 ARMKKAA--EAEKEEKK 126
            R ++AA  EA+KEEKK
Sbjct: 202 VRSRRAARKEAKKEEKK 218

Length = 218

>gnl|CDD|226798 COG4352, RPL13, Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 34/46 (73%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 46
           AAG+  + A T+G++VDHRR+NR+ E  ++ V+R+K    K++VFP
Sbjct: 68  AAGLSARKARTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP 113

Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG3295	205	consensus 60S Ribosomal protein L13 [Translation,	100.0
PTZ00352	212	60S ribosomal protein L13; Provisional	100.0
PTZ00192	218	60S ribosomal protein L13; Provisional	100.0
PF01294	179	Ribosomal_L13e: Ribosomal protein L13e; InterPro:	100.0
PRK12277	83	50S ribosomal protein L13e; Provisional	99.79
COG4352	113	RPL13 Ribosomal protein L13E [Translation, ribosom	99.67

>KOG3295 consensus 60S Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-53  Score=335.34  Aligned_cols=126  Identities=58%  Similarity=0.816  Sum_probs=123.8

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccCCCCHHHhhhhhhccCccCCCCCCCC
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERP   80 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkGDs~~ee~~~a~q~~~~v~Pi~~~~~   80 (126)
                      +|||++++|+||||||||||+|+|+|+||.||||||+|+|||||||+++++|++|||++||+++++|++|++|||.+...
T Consensus        80 ~AGi~k~~A~tiGIaVD~RRrn~s~E~lqaNvqRlKey~sklilfprk~~apkkGdSsaeel~~atq~~g~~mPi~~~~~  159 (205)
T KOG3295|consen   80 AAGISKKVARTIGIAVDHRRRNRSQEGLQANVQRLKEYKSKLILFPRKASAPKKGDSSAEELKLATQLTGPVMPIVNVYA  159 (205)
T ss_pred             HcCccHhhccceeeeecccccCccHHHHHHhHHHHHHhhcceEEeecCcCCCcCCCCcHHHHHhhhhhcCCCcCccccch
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcccccchHHHHHHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 041207           81 TVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEEKK  126 (126)
Q Consensus        81 ~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~~  126 (126)
                      .++++.+|+|++.|+||++||++|+|+||.|+|+||++|++|+|+|
T Consensus       160 ~eEa~~~t~e~k~f~Af~~lr~aRa~ar~~g~raKRa~Eaae~EkK  205 (205)
T KOG3295|consen  160 KEEARVVTDEEKNFKAFRTLRLARANARLAGIRAKRAKEAAEEEKK  205 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999865

>PTZ00352 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.4e-50  Score=322.13  Aligned_cols=123  Identities=38%  Similarity=0.630  Sum_probs=119.1

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccC------CCCHHHhhh--hh-hccCc
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG------DSAPEELAT--AT-QVQGP   71 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkG------Ds~~ee~~~--a~-q~~~~   71 (126)
                      +|||++++|+||||+|||||+|+|+|||+.||||||+|+|+|||||++.++||||      |+++||++.  ++ |+.|.
T Consensus        80 aaGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~y~skLvlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~  159 (212)
T PTZ00352         80 AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSE  159 (212)
T ss_pred             HcCCCHHHhcccceeeccccccCcHHHHHHHHHHHHHHHHheeeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCc
Confidence            5899999999999999999999999999999999999999999999999999999      999999988  77 89999


Q ss_pred             cCCCCCCCCcccccccCcccccchHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q 041207           72 YMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKE  123 (126)
Q Consensus        72 v~Pi~~~~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~  123 (126)
                      +|||.+..+.++++.||+||++|+||.+||+||+++|++|+|+|+++++++.
T Consensus       160 vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~r~kra~~k~~~  211 (212)
T PTZ00352        160 VIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKK  211 (212)
T ss_pred             eecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999988763

>PTZ00192 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=7.5e-50  Score=318.82  Aligned_cols=119  Identities=42%  Similarity=0.623  Sum_probs=113.2

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccCCCCHHHhhhhhh---------ccCc
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ---------VQGP   71 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkGDs~~ee~~~a~q---------~~~~   71 (126)
                      +|||++++|+||||+|||||+|+|+||||.|||||++|+|+|||||++.++|||||+++||++.++|         +.|.
T Consensus        87 ~aGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk~~k~kkgds~~ee~k~a~Q~~~~~~~~~~~g~  166 (218)
T PTZ00192         87 AAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKVQKGEAKEEEVKAATQDRSRFGDAAVGGV  166 (218)
T ss_pred             HcCCCHHHhcccceeeccccccccHHHHHHHHHHHHHHHHheeeeccccCCCCCCCCCHHHHHHHHhhhcccccccccCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999         6689


Q ss_pred             cCCCCCCCCcccccccCcccccchHHHHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 041207           72 YMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEE  124 (126)
Q Consensus        72 v~Pi~~~~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~  124 (126)
                      +|||     .++++.||++|++|+||.+||+||+++|++|+|+|+|++++..+
T Consensus       167 v~Pi-----~~~~~~it~eek~~~Ay~~LR~aR~~~r~~G~r~krak~~~~~~  214 (218)
T PTZ00192        167 VTPS-----REAPRVVSKEERSKNVYAFLKKNHSAVRFFGVRSRRAARKEAKK  214 (218)
T ss_pred             cccc-----ccccccCCHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHhh
Confidence            9999     47899999999999999999999999999999999998876543

>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5e-45  Score=284.73  Aligned_cols=103  Identities=56%  Similarity=0.834  Sum_probs=66.5

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccCCCCHHHhhhhhhccCccCCCCCCCC
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERP   80 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkGDs~~ee~~~a~q~~~~v~Pi~~~~~   80 (126)
                      +|||+.++|+||||+|||||+|+|+|||+.|||||++|+|||||||++.++||+||+++||++.|+|+.|++|||.+..+
T Consensus        77 ~aGi~~~~A~tiGI~VD~RR~n~s~Esl~~Nv~RLkeY~sklilfPrk~~~~kkGdss~ee~k~a~q~~~~v~Pi~~~~~  156 (179)
T PF01294_consen   77 AAGISKKYARTIGISVDHRRKNKSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKLATQLKGPVMPIRKVKK  156 (179)
T ss_dssp             HHT--HHHHHHHTB-B-TT----SHHHHHHHHHHHHHHHHT-----SSS---TTT--TTHHHH-----HHHHS-------
T ss_pred             HcCCChHHccccCeeeccccCCccHHHHHHHHHHHHhhhhhceeecCccccccccCCCHHHHHHHHhhcCceeeecCCcC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcccccchHHHHHHHH
Q 041207           81 TVELVKVTQDMKSFKAYDKLRIE  103 (126)
Q Consensus        81 ~~~~r~it~eek~~~ay~~LR~a  103 (126)
                      .++++.||+||++|+||.+||+|
T Consensus       157 ~~~~r~it~eek~~~af~~LR~a  179 (179)
T PF01294_consen  157 KEKARAITEEEKKFSAFRTLRMA  179 (179)
T ss_dssp             ----HHHHHHHTTS-HHHHHHHH
T ss_pred             ccccccCCHHHhhhhHHHHHhcC
Confidence            99999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.

>PRK12277 50S ribosomal protein L13e; Provisional

Probab=99.79  E-value=2.7e-20  Score=130.34  Aligned_cols=39  Identities=44%  Similarity=0.571  Sum_probs=37.4

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcce
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV   43 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLi   43 (126)
                      +|||++++|+||||+|||||+|+|+|    ||||||+|+|+|=
T Consensus        41 aaGi~~~~ArtiGI~VD~RRrn~~~e----NVerLk~y~skL~   79 (83)
T PRK12277         41 AAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLEQLG   79 (83)
T ss_pred             HcCCCHHHhcccCeeecccccCCCHH----HHHHHHHHHHHhc
Confidence            59999999999999999999999988    9999999999984

>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.5e-17  Score=121.80  Aligned_cols=46  Identities=46%  Similarity=0.811  Sum_probs=45.2

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeec
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP   46 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfP   46 (126)
                      +||++.+.||+|||+|||||+|.++|++++||+||++|++++|+||
T Consensus        68 aAGL~~~~AR~LGI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~p  113 (113)
T COG4352          68 AAGLSARKARTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP  113 (113)
T ss_pred             HcCcCHHHHHhhCcceehhhccCCHHHHHHHHHHHHHHHhcCccCC
Confidence            5899999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3zf7_N	218	High-resolution Cryo-electron Microscopy Structure		2e-14
4a18_U	206	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-11
3u5e_L	199	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-11

>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 218

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAG+  + A TIG+ VD RRKN+S EG+  NVQRLKTY +KLV+FP   +K + GD+  E
Sbjct: 87  AAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEE 146
Query: 61  ELATATQVQGPY 72
           E+  ATQ +  Y
Sbjct: 147 EVKAATQDRSRY 158

>pdb|4A18|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 206

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG---DS 57
           AAGI    A +IG+ VDHRRKNR  E L+ N +RL  Y +KLV+FPR   K K G   D+
Sbjct: 80  AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDT 139
Query: 58  APEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
           A    A    +Q   +P+       + V    +++  K Y  +R E+ N++  G
Sbjct: 140 ADTSSAAQNALQTS-VPLPSVSKREKAVSNIAELRKKKVYRIIRQEKTNQKWDG 192

>pdb|3U5E|L Chain L, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 199

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE
Sbjct: 82  AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE 134
Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 111
             A          PIA     VE   V  + +S  A+  LR+ R  ++  G
Sbjct: 135 --AEQVLSAAATFPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	7e-32
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	1e-25
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U Length = 206

 Score =  110 bits (277), Expect = 7e-32
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG--DSA 58
           AAGI    A +IG+ VDHRRKNR  E L+ N +RL  Y +KLV+FPR   K K G  +  
Sbjct: 80  AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDT 139

Query: 59  PEELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAA 118
            +  + A       +P+       + V    +++  K Y  +R E+ N++  G R  KA 
Sbjct: 140 ADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQ 199

Query: 119 EAEKEE 124
            A + +
Sbjct: 200 AAAEPK 205

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L Length = 199

 Score = 94.4 bits (234), Expect = 1e-25
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 1   AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPE 60
           AAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +  +A      
Sbjct: 82  AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEAEQ---- 137

Query: 61  ELATATQVQGPYMPIAPERPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEA 120
                        PI   +P  ++           A+  LR+ R  ++  G R K+A E 
Sbjct: 138 -----VLSAAATFPI--AQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIREKRAREK 190

Query: 121 EKEEKK 126
            + E +
Sbjct: 191 AEAEAE 196

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 19/49 (38%)

Query: 21 KNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQ 69
          + ++L+ LQ+    LK Y               A DSAP  LA    ++
Sbjct: 18 EKQALKKLQA---SLKLY---------------ADDSAP-ALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	100.0
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	100.0

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U

Probab=100.00  E-value=1.4e-54  Score=342.99  Aligned_cols=124  Identities=35%  Similarity=0.526  Sum_probs=120.4

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccC--CCCHHHhhhhhhccCccCCCCCC
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG--DSAPEELATATQVQGPYMPIAPE   78 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkG--Ds~~ee~~~a~q~~~~v~Pi~~~   78 (126)
                      +|||++++|+||||+|||||+|+|+||||.||||||+|+|||||||++.++||||  ||++||++.|+|++|.+|||.++
T Consensus        80 ~aGi~~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sklIlFPrk~~k~kkG~~Dss~ee~k~a~q~~g~vmPi~~~  159 (206)
T 4a18_U           80 AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSV  159 (206)
T ss_dssp             HHTCCHHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCTTTTCCCTTHHHHCCCCCHHHHSCCCCC
T ss_pred             HcCCCHHHhcccCeeeccccccccHhHHHHHHHHHHHHHHheEEeeCcccccccCCCCCCHHHHHHHHHhcccccCccCc
Confidence            4899999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             CCcccccccCcccccchHHHHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 041207           79 RPTVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEE  124 (126)
Q Consensus        79 ~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~  124 (126)
                      .+.++++.||+||++|+||.+||+||+|+|++|+|+|+++++||+.
T Consensus       160 ~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~  205 (206)
T 4a18_U          160 SKREKAVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQAAAEPK  205 (206)
T ss_dssp             CCCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccccCChhhhcccHHHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999998875

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L

Probab=100.00  E-value=3.4e-49  Score=310.78  Aligned_cols=114  Identities=39%  Similarity=0.582  Sum_probs=110.4

Q ss_pred             CCCCCCCccCccCeeeccCCCCCchhhHHHHHHHHHhhhhcceeecCCccccccCCCCHHHhhhhhhccCccCCCCCCCC
Q 041207            1 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPERP   80 (126)
Q Consensus         1 aAGi~~k~ArtIGIaVD~RR~N~S~Esl~~NVqRLKeY~skLilfPrk~~kpkkGDs~~ee~~~a~q~~~~v~Pi~~~~~   80 (126)
                      +|||++++|+||||+|||||+|+|+||||.||||||+|+|||||||++.++|+||         ++|++|.+|||.++.+
T Consensus        82 ~aGi~~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sklilFPrk~~~~kkG---------atq~~g~vmPi~~~~~  152 (199)
T 3u5e_L           82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEAE---------QVLSAAATFPIAQPAT  152 (199)
T ss_dssp             HTTCCHHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHTEEECCSSSCCCCCC---------CCCCSTTTSCCCCCCC
T ss_pred             HcCCCHHHhcccCeeeccccccccHHHHHHHHHHHHHHHhheeEecccccccccc---------cccccccccccccccc
Confidence            5899999999999999999999999999999999999999999999999999999         7999999999999999


Q ss_pred             cccccccCcccccchHHHHHHHHHhhhhhhhhhhhHHHHHHHhhc
Q 041207           81 TVELVKVTQDMKSFKAYDKLRIERVNERHFGARMKKAAEAEKEEK  125 (126)
Q Consensus        81 ~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~  125 (126)
                      .++++.||+|  +|+||.+||+||+|+|++|+|+|+++++||+++
T Consensus       153 ~~~~r~it~e--~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~~  195 (199)
T 3u5e_L          153 DVEARAVQDN--GESAFRTLRLARSEKKFRGIREKRAREKAEAEA  195 (199)
T ss_dssp             SCSEECCCCC--CCCSHHHHHHHHHHHHTHHHHHHHHHHHHCCC-
T ss_pred             cccccccChh--hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence            9999999999  899999999999999999999999999998865

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00